Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for CKB (ENSMMMG00000004465) (Alpin marmot)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species	2408 homologs (oldest homol. - dupl. node) 1400 homologs
Chordata	~550 Mya	393 species	1383 homologs
Vertebrata	~550 Mya	389 species	1373 homologs (dupl. node) 1257 homologs (dupl. node) 627 homologs
Gnathostomata	~473 Mya	385 species	624 homologs
Euteleostomi	~420 Mya	383 species	622 homologs
Sarcopterygii	~400 Mya	253 species	288 homologs
Tetrapoda	~359 Mya	251 species	286 homologs
Amniota	~326 Mya	247 species	278 homologs
Mammalia	~184 Mya	193 species	220 homologs
Theria	~166 Mya	191 species	218 homologs
Eutheria	~102 Mya	181 species	202 homologs
Boreoeutheria	~95 Mya	171 species	196 homologs
Euarchontoglires	~90 Mya	95 species	109 homologs
Euarchontoglires_A	~90 Mya	47 species	51 homologs
Glires	~81 Mya	45 species	49 homologs
Rodentia	~80 Mya	41 species	43 homologs
Rodentia_A	~80 Mya	15 species	18 homologs
Sciuridae	~34 Mya	7 species	9 homologs
Marmotini	~7 Mya	5 species	5 homologs
Alpin marmot	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'