Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00390000004600.b.a (Anatidae)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species	880 homologs (oldest homol.)
Bilateria	~580 Mya	397 species	878 homologs
Chordata	~550 Mya	393 species	872 homologs
Vertebrata	~550 Mya	389 species	868 homologs
Gnathostomata	~473 Mya	385 species	865 homologs (dupl. node) 854 homologs (dupl. node) 424 homologs
Euteleostomi	~420 Mya	383 species	422 homologs
Sarcopterygii	~400 Mya	253 species	258 homologs
Tetrapoda	~359 Mya	251 species	256 homologs
Amniota	~326 Mya	247 species	252 homologs
Sauria	~267 Mya	53 species	55 homologs
Archelosauria	~250 Mya	37 species	39 homologs
Archosauria	~236 Mya	27 species	29 homologs
Aves	~111 Mya	25 species	27 homologs
Neognathae	~105 Mya	23 species	25 homologs
Galloanserae	~80 Mya	9 species	11 homologs
Anatidae	~30 Mya	3 species	3 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'