Root species for Tc00.1047053507063.40 (Trypanosoma cruzi) | AlignView depth | PhyloView depth | |
---|---|---|---|
Eukaryota | ~10 Mya | 155 species | |
Trypanosomatidae | ~10 Mya | 21 species | |
Trypanosoma | ~10 Mya | 4 species | |
Trypanosoma cruzi | ~0 Mya | 1 species | 2 homologs (oldest homol. - dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'