Root species for RPLP0 (ENSCHIG00000015368) (Goat) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | 1110 homologs (oldest homol.) |
Bilateria | ~580 Mya | 397 species | 1108 homologs |
Chordata | ~550 Mya | 393 species | 1104 homologs |
Vertebrata | ~550 Mya | 389 species | 1100 homologs |
Gnathostomata | ~473 Mya | 385 species | 1094 homologs |
Euteleostomi | ~420 Mya | 383 species | 1092 homologs |
Sarcopterygii | ~400 Mya | 253 species | 933 homologs |
Tetrapoda | ~359 Mya | 251 species | 931 homologs |
Amniota | ~326 Mya | 247 species | 925 homologs (dupl. node) 726 homologs (dupl. node) 177 homologs |
Mammalia | ~184 Mya | 193 species | 171 homologs |
Theria | ~166 Mya | 191 species | 170 homologs |
Eutheria | ~102 Mya | 181 species | 164 homologs |
Boreoeutheria | ~95 Mya | 171 species | 159 homologs |
Laurasiatheria | ~88 Mya | 75 species | 68 homologs |
Laurasiatheria_a | ~77 Mya | 71 species | 67 homologs |
Artiodactyla | ~61 Mya | 37 species | 44 homologs |
Artiodactyla_a | ~61 Mya | 33 species | 43 homologs |
Artiodactyla_b | ~61 Mya | 29 species | 39 homologs |
Pecora | ~27 Mya | 17 species | 21 homologs |
Percora_a | ~27 Mya | 15 species | 19 homologs |
Bovidae | ~25 Mya | 13 species | 13 homologs |
Caprinae | ~9 Mya | 3 species | 3 homologs |
Goat | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'