Genomicus v110.01 Title
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DYOGEN group

web-code version: 2021-08-15
database version: 110.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for ATN1 (ENSMNEG00000037346) (Pig-tailed macaque) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 399 species
Bilateria Bilateria ~580 Mya 397 species 974 homologs (oldest homol.)
Chordata Chordata ~550 Mya 393 species 970 homologs (dupl. node)
821 homologs (dupl. node)
254 homologs
Vertebrata Vertebrata ~550 Mya 389 species 250 homologs
Gnathostomata Gnathostomata ~473 Mya 385 species 249 homologs
Euteleostomi Euteleostomi ~420 Mya 383 species 248 homologs
Sarcopterygii Sarcopterygii ~400 Mya 253 species 247 homologs
Tetrapoda Tetrapoda ~359 Mya 251 species 245 homologs
Amniota Amniota ~326 Mya 247 species 241 homologs
Mammalia Mammalia ~184 Mya 193 species 187 homologs
Theria Theria ~166 Mya 191 species 185 homologs
Eutheria Eutheria ~102 Mya 181 species 176 homologs
Boreoeutheria Boreoeutheria ~95 Mya 171 species 167 homologs
Euarchontoglires Euarchontoglires ~90 Mya 95 species 94 homologs
Primates Primates ~83 Mya 47 species 45 homologs
Haplorrhini Haplorrhini ~57 Mya 39 species 37 homologs
Simiiformes Simiiformes ~45 Mya 37 species 36 homologs
Catarrhini Catarrhini ~30 Mya 29 species 28 homologs
Cercopithecidae Cercopithecidae ~19 Mya 17 species 17 homologs
Cercopithecinae Cercopithecinae ~13 Mya 13 species 13 homologs
Cercopithecinae_a Cercopithecinae_a ~13 Mya 11 species 11 homologs
Macaca Macaca ~5 Mya 5 species 5 homologs
Pig-tailed macaque Pig-tailed macaque ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'