Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for mespab (ENSSFOG00015023565) (Asian bonytongue)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species	1181 homologs (oldest homol.)
Chordata	~550 Mya	393 species	1178 homologs
Vertebrata	~550 Mya	389 species	1175 homologs
Gnathostomata	~473 Mya	385 species	1174 homologs (dupl. node) 1157 homologs (dupl. node) 787 homologs
Euteleostomi	~420 Mya	383 species	785 homologs
Actinopterygii	~386 Mya	129 species	382 homologs (dupl. node) 360 homologs (dupl. node) 170 homologs
Neopterygii	~314 Mya	127 species	168 homologs
Osteoglossocephalai	~267 Mya	125 species	164 homologs
Osteoglossiformes	~163 Mya	3 species	4 homologs
Asian bonytongue	~0 Mya	1 species	2 homologs (dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'