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Root species for TCAF1 (ENSRROG00000043188) (Golden snub-nosed monkey) | AlignView depth | PhyloView depth | |
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Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
|
Chordata | ![]() |
393 species ![]() |
|
Vertebrata | ![]() |
389 species ![]() |
1015 homologs (oldest homol.) ![]() |
Gnathostomata | ![]() |
385 species ![]() |
1010 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
1009 homologs (dupl. node) ![]() 937 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
584 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
583 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
570 homologs ![]() |
Mammalia | ![]() |
193 species ![]() |
464 homologs ![]() |
Theria | ![]() |
191 species ![]() |
458 homologs ![]() |
Eutheria | ![]() |
181 species ![]() |
438 homologs (dupl. node) ![]() 173 homologs ![]() |
Boreoeutheria | ![]() |
171 species ![]() |
165 homologs ![]() |
Euarchontoglires | ![]() |
95 species ![]() |
94 homologs ![]() |
Primates | ![]() |
47 species ![]() |
47 homologs ![]() |
Haplorrhini | ![]() |
39 species ![]() |
39 homologs ![]() |
Simiiformes | ![]() |
37 species ![]() |
37 homologs ![]() |
Catarrhini | ![]() |
29 species ![]() |
29 homologs ![]() |
Cercopithecidae | ![]() |
17 species ![]() |
17 homologs ![]() |
Rhinopithecus | ![]() |
3 species ![]() |
3 homologs ![]() |
Golden snub-nosed monkey | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'