Genomicus v110.01 Title
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DYOGEN group

web-code version: 2021-08-15
database version: 110.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for G6PD (ENSOARG00020019292) (Rambouillet Sheep) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 399 species 965 homologs (oldest homol.)
Bilateria Bilateria ~580 Mya 397 species 963 homologs (dupl. node)
558 homologs
Chordata Chordata ~550 Mya 393 species 551 homologs
Vertebrata Vertebrata ~550 Mya 389 species 547 homologs
Gnathostomata Gnathostomata ~473 Mya 385 species 543 homologs
Euteleostomi Euteleostomi ~420 Mya 383 species 542 homologs
Sarcopterygii Sarcopterygii ~400 Mya 253 species 263 homologs
Tetrapoda Tetrapoda ~359 Mya 251 species 261 homologs
Amniota Amniota ~326 Mya 247 species 257 homologs
Mammalia Mammalia ~184 Mya 193 species 211 homologs
Theria Theria ~166 Mya 191 species 209 homologs
Eutheria Eutheria ~102 Mya 181 species 199 homologs
Boreoeutheria Boreoeutheria ~95 Mya 171 species 190 homologs
Laurasiatheria Laurasiatheria ~88 Mya 75 species 75 homologs
Laurasiatheria_a Laurasiatheria_a ~77 Mya 71 species 71 homologs
Artiodactyla Artiodactyla ~61 Mya 37 species 38 homologs
Artiodactyla_a Artiodactyla_a ~61 Mya 33 species 34 homologs
Artiodactyla_b Artiodactyla_b ~61 Mya 29 species 30 homologs
Pecora Pecora ~27 Mya 17 species 16 homologs
Percora_a Percora_a ~27 Mya 15 species 14 homologs
Bovidae Bovidae ~25 Mya 13 species 12 homologs
Caprinae Caprinae ~9 Mya 3 species 3 homologs
Rambouillet Sheep Rambouillet Sheep ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'