Root species for ENSGT00390000001176 (Cebidae_a) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 534 species | |
Bilateria | ~580 Mya | 532 species | |
Chordata | ~550 Mya | 528 species | |
Vertebrata | ~550 Mya | 524 species | |
Gnathostomata | ~473 Mya | 520 species | |
Euteleostomi | ~420 Mya | 518 species | |
Sarcopterygii | ~400 Mya | 356 species | |
Tetrapoda | ~359 Mya | 354 species | |
Amniota | ~326 Mya | 350 species | |
Mammalia | ~184 Mya | 212 species | |
Theria | ~166 Mya | 210 species | 196 homologs (oldest homol.) |
Eutheria | ~102 Mya | 200 species | 188 homologs |
Boreoeutheria | ~95 Mya | 190 species | 178 homologs |
Euarchontoglires | ~90 Mya | 108 species | 98 homologs |
Primates | ~83 Mya | 53 species | 53 homologs |
Haplorrhini | ~57 Mya | 45 species | 45 homologs |
Simiiformes | ~45 Mya | 43 species | 43 homologs |
Platyrrhini | ~19 Mya | 7 species | 7 homologs |
Cebidae | ~19 Mya | 5 species | 5 homologs |
Cebidae_a | ~19 Mya | 3 species | 3 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'