Root species for ENSGT00940000154208.d.c (Characiphysae) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 279 species | |
Bilateria | ~580 Mya | 277 species | 618 homologs (oldest homol.) |
Chordata | ~550 Mya | 273 species | 612 homologs |
Vertebrata | ~550 Mya | 269 species | 611 homologs |
Euteleostomi | ~420 Mya | 265 species | 608 homologs (dupl. node) 248 homologs |
Neopterygii | ~314 Mya | 95 species | 100 homologs |
Osteoglossocephalai | ~267 Mya | 93 species | 98 homologs (dupl. node) 87 homologs |
Clupeocephala | ~229 Mya | 89 species | 86 homologs |
Otophysi | ~152 Mya | 7 species | 6 homologs |
Characiphysae | ~150 Mya | 5 species | 5 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'