Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for RPL9 (ENSTGUG00000022418) (Zebra finch)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species	1471 homologs (oldest homol.)
Bilateria	~580 Mya	397 species	1465 homologs
Chordata	~550 Mya	393 species	1461 homologs
Vertebrata	~550 Mya	389 species	1457 homologs
Gnathostomata	~473 Mya	385 species	1453 homologs
Euteleostomi	~420 Mya	383 species	1451 homologs (dupl. node) 315 homologs
Sarcopterygii	~400 Mya	253 species	144 homologs
Tetrapoda	~359 Mya	251 species	142 homologs (dupl. node) 101 homologs
Amniota	~326 Mya	247 species	100 homologs
Sauria	~267 Mya	53 species	59 homologs
Archelosauria	~250 Mya	37 species	39 homologs
Archosauria	~236 Mya	27 species	29 homologs
Aves	~111 Mya	25 species	27 homologs
Neognathae	~105 Mya	23 species	25 homologs
Neognathae_b	~105 Mya	13 species	15 homologs
Passeriformes	~65 Mya	9 species	11 homologs
Passeriformes_d	~65 Mya	7 species	9 homologs
Passeriformes_g	~42 Mya	5 species	7 homologs
Passeroidea	~35 Mya	3 species	3 homologs
Zebra finch	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'