Genomicus v98.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00940000153567.b.b.b.b (Ovalentaria_A)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	373 species
Bilateria	~580 Mya	371 species
Chordata	~550 Mya	367 species
Vertebrata	~550 Mya	363 species	941 homologs (oldest homol.)
Gnathostomata	~473 Mya	359 species	934 homologs (dupl. node) 688 homologs (dupl. node) 563 homologs (dupl. node) 297 homologs
Euteleostomi	~420 Mya	357 species	293 homologs
Actinopterigyii	~386 Mya	115 species	35 homologs
Neopterygii	~314 Mya	113 species	31 homologs (dupl. node) 29 homologs
Osteoglossocephalai	~267 Mya	111 species	27 homologs
Clupeocephala	~229 Mya	107 species	26 homologs
Euteleosteomorpha	~206 Mya	93 species	25 homologs
Acanthomorphata	~148 Mya	89 species	24 homologs
Percomorphaceae	~128 Mya	87 species	23 homologs
Percomorphaceae_A	~128 Mya	85 species	22 homologs
Percomorphaceae_B	~128 Mya	83 species	21 homologs
Ovalentaria	~128 Mya	69 species	20 homologs
Ovalentaria_A	~111 Mya	52 species	15 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here