Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for RPL5 (ENSMEUG00000006361) (Wallaby)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species	1470 homologs (oldest homol.)
Bilateria	~580 Mya	397 species	1468 homologs
Chordata	~550 Mya	393 species	1464 homologs
Vertebrata	~550 Mya	389 species	1460 homologs
Gnathostomata	~473 Mya	385 species	1456 homologs
Euteleostomi	~420 Mya	383 species	1452 homologs
Sarcopterygii	~400 Mya	253 species	1132 homologs
Tetrapoda	~359 Mya	251 species	1126 homologs
Amniota	~326 Mya	247 species	1120 homologs (dupl. node) 1113 homologs (dupl. node) 965 homologs
Mammalia	~184 Mya	193 species	907 homologs
Theria	~166 Mya	191 species	905 homologs
Marsupialia	~85 Mya	9 species	15 homologs (dupl. node) 9 homologs
Marsupialia_b	~85 Mya	7 species	7 homologs
Diprotodontia	~35 Mya	5 species	5 homologs
Wallaby	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'