Genomicus v91.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00730000110297.B (Glires)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	179 species
Bilateria	~580 Mya	177 species	1034 homologs (oldest homol. - dupl. node) 894 homologs (dupl. node) 549 homologs (dupl. node) 371 homologs (dupl. node) 188 homologs
Chordata	~550 Mya	173 species	187 homologs
Vertebrata	~550 Mya	169 species	184 homologs
Euteleostomi	~420 Mya	167 species	182 homologs
Sarcopterygii	~400 Mya	145 species	162 homologs
Tetrapoda	~359 Mya	143 species	160 homologs
Amniota	~326 Mya	141 species	158 homologs
Mammalia	~184 Mya	127 species	142 homologs
Theria	~166 Mya	125 species	138 homologs
Eutheria	~102 Mya	119 species	132 homologs
Boreoeutheria	~95 Mya	110 species	125 homologs
Euarchontoglires	~90 Mya	87 species	104 homologs
Glires	~81 Mya	43 species	45 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here