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Root species for TSG101 (ENSCJAG00000086769) (Marmoset) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
904 homologs (oldest homol.) ![]() |
Bilateria | ![]() |
397 species ![]() |
902 homologs ![]() |
Chordata | ![]() |
393 species ![]() |
898 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
895 homologs (dupl. node) ![]() 890 homologs (dupl. node) ![]() 310 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
309 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
308 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
305 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
303 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
300 homologs ![]() |
Mammalia | ![]() |
193 species ![]() |
252 homologs ![]() |
Theria | ![]() |
191 species ![]() |
250 homologs ![]() |
Eutheria | ![]() |
181 species ![]() |
238 homologs ![]() |
Boreoeutheria | ![]() |
171 species ![]() |
229 homologs ![]() |
Euarchontoglires | ![]() |
95 species ![]() |
105 homologs ![]() |
Primates | ![]() |
47 species ![]() |
49 homologs ![]() |
Haplorrhini | ![]() |
39 species ![]() |
39 homologs ![]() |
Simiiformes | ![]() |
37 species ![]() |
37 homologs ![]() |
Platyrrhini | ![]() |
7 species ![]() |
7 homologs ![]() |
Cebidae | ![]() |
5 species ![]() |
5 homologs ![]() |
Marmoset | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'