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Root species for YES1 (ENSPTRG00000009824) (Chimpanzee) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
|
Chordata | ![]() |
393 species ![]() |
|
Vertebrata | ![]() |
389 species ![]() |
600 homologs (oldest homol.) ![]() |
Gnathostomata | ![]() |
385 species ![]() |
597 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
595 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
302 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
300 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
296 homologs ![]() |
Mammalia | ![]() |
193 species ![]() |
236 homologs ![]() |
Theria | ![]() |
191 species ![]() |
234 homologs ![]() |
Eutheria | ![]() |
181 species ![]() |
218 homologs ![]() |
Boreoeutheria | ![]() |
171 species ![]() |
210 homologs ![]() |
Euarchontoglires | ![]() |
95 species ![]() |
132 homologs ![]() |
Primates | ![]() |
47 species ![]() |
68 homologs ![]() |
Haplorrhini | ![]() |
39 species ![]() |
60 homologs ![]() |
Simiiformes | ![]() |
37 species ![]() |
58 homologs ![]() |
Catarrhini | ![]() |
29 species ![]() |
48 homologs ![]() |
Hominoidea | ![]() |
11 species ![]() |
14 homologs ![]() |
Hominidae | ![]() |
9 species ![]() |
12 homologs ![]() |
Homo/Pan/Gorilla group | ![]() |
7 species ![]() |
10 homologs ![]() |
Homo/Pan group | ![]() |
5 species ![]() |
8 homologs ![]() |
Pan | ![]() |
3 species ![]() |
6 homologs ![]() |
Chimpanzee | ![]() |
1 species ![]() |
2 homologs (dupl. node) ![]() 1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'