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Root species for ENSGT00950000183022.b.c (Cyprininae_a) | AlignView depth | PhyloView depth | |
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Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
1645 homologs (oldest homol.) ![]() |
Chordata | ![]() |
393 species ![]() |
1633 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
1625 homologs (dupl. node) ![]() 443 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
439 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
437 homologs ![]() |
Actinopterygii | ![]() |
129 species ![]() |
165 homologs ![]() |
Neopterygii | ![]() |
127 species ![]() |
163 homologs ![]() |
Osteoglossocephalai | ![]() |
125 species ![]() |
161 homologs ![]() |
Clupeocephala | ![]() |
121 species ![]() |
153 homologs ![]() |
Otomorpha | ![]() |
19 species ![]() |
22 homologs ![]() |
Otophysi | ![]() |
15 species ![]() |
18 homologs ![]() |
Cyprinoidei | ![]() |
7 species ![]() |
10 homologs ![]() |
Cyprininae | ![]() |
5 species ![]() |
8 homologs ![]() |
Cyprininae_a | ![]() |
3 species ![]() |
6 homologs (dupl. node) ![]() 3 homologs ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'