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Root species for FOXD1 (ENSABRG00000000141) (Pink-footed goose) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
|
Chordata | ![]() |
393 species ![]() |
|
Vertebrata | ![]() |
389 species ![]() |
591 homologs (oldest homol.) ![]() |
Gnathostomata | ![]() |
385 species ![]() |
588 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
587 homologs (dupl. node) ![]() 245 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
160 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
159 homologs ![]() |
Amniota | ![]() |
247 species ![]() |
158 homologs ![]() |
Sauria | ![]() |
53 species ![]() |
28 homologs ![]() |
Archelosauria | ![]() |
37 species ![]() |
12 homologs ![]() |
Archosauria | ![]() |
27 species ![]() |
9 homologs ![]() |
Aves | ![]() |
25 species ![]() |
8 homologs ![]() |
Neognathae | ![]() |
23 species ![]() |
7 homologs ![]() |
Galloanserae | ![]() |
9 species ![]() |
3 homologs ![]() |
Anatidae | ![]() |
3 species ![]() |
2 homologs ![]() |
Pink-footed goose | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'