GenomicusPlants v49.01

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for Prudul26B015610 (prunus.dulcis)	AlignView depth	PhyloView depth
eukaryota	158 species
archaeplastida	148 species
viridiplantae	142 species
streptophyta	138 species	169 homologs (oldest homol.)
embryophyta	136 species	165 homologs (dupl. node) 157 homologs
magnoliophyta	133 species	154 homologs
mesangiospermae	131 species	153 homologs
pentapetalae	74 species	88 homologs
rosids	57 species	65 homologs
fabids	35 species	37 homologs
NoName6	31 species	33 homologs
NoName5	17 species	17 homologs
rosales	11 species	11 homologs
NoName4	9 species	9 homologs
amygdaloideae	7 species	7 homologs
amygdaleae	5 species	5 homologs
NoName3	3 species	3 homologs
prunus.dulcis	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'