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Root species for ENSGT00530000063723.a.c (Oncorhynchus) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
756 homologs (oldest homol.) ![]() |
Bilateria | ![]() |
397 species ![]() |
754 homologs ![]() |
Chordata | ![]() |
393 species ![]() |
750 homologs (dupl. node) ![]() 399 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
398 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
395 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
393 homologs ![]() |
Actinopterygii | ![]() |
129 species ![]() |
143 homologs ![]() |
Neopterygii | ![]() |
127 species ![]() |
141 homologs ![]() |
Osteoglossocephalai | ![]() |
125 species ![]() |
139 homologs ![]() |
Clupeocephala | ![]() |
121 species ![]() |
135 homologs ![]() |
Euteleosteomorpha | ![]() |
101 species ![]() |
109 homologs ![]() |
Protacanthopterygii | ![]() |
13 species ![]() |
21 homologs ![]() |
Salmoninae | ![]() |
11 species ![]() |
19 homologs (dupl. node) ![]() 11 homologs ![]() |
Salmoninae_a | ![]() |
9 species ![]() |
9 homologs ![]() |
Oncorhynchus | ![]() |
5 species ![]() |
5 homologs ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'