Root species for ATP5F1A (ENSOARG00020025008) (Rambouillet Sheep) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | 669 homologs (oldest homol.) |
Bilateria | ~580 Mya | 397 species | 667 homologs |
Chordata | ~550 Mya | 393 species | 661 homologs |
Vertebrata | ~550 Mya | 389 species | 655 homologs |
Gnathostomata | ~473 Mya | 385 species | 649 homologs |
Euteleostomi | ~420 Mya | 383 species | 647 homologs |
Sarcopterygii | ~400 Mya | 253 species | 364 homologs |
Tetrapoda | ~359 Mya | 251 species | 362 homologs |
Amniota | ~326 Mya | 247 species | 356 homologs |
Mammalia | ~184 Mya | 193 species | 272 homologs |
Theria | ~166 Mya | 191 species | 270 homologs |
Eutheria | ~102 Mya | 181 species | 252 homologs |
Boreoeutheria | ~95 Mya | 171 species | 241 homologs |
Laurasiatheria | ~88 Mya | 75 species | 108 homologs |
Laurasiatheria_a | ~77 Mya | 71 species | 105 homologs |
Artiodactyla | ~61 Mya | 37 species | 48 homologs |
Artiodactyla_a | ~61 Mya | 33 species | 44 homologs |
Artiodactyla_b | ~61 Mya | 29 species | 40 homologs |
Pecora | ~27 Mya | 17 species | 28 homologs |
Percora_a | ~27 Mya | 15 species | 26 homologs (dupl. node) 18 homologs |
Bovidae | ~25 Mya | 13 species | 16 homologs |
Caprinae | ~9 Mya | 3 species | 6 homologs (dupl. node) 3 homologs |
Rambouillet Sheep | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'