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Root species for nodal5 (ENSXETG00000017442) (Frog) | AlignView depth | PhyloView depth | |
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Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
228 homologs (oldest homol.) ![]() |
Chordata | ![]() |
393 species ![]() |
217 homologs ![]() |
Vertebrata | ![]() |
389 species ![]() |
213 homologs ![]() |
Gnathostomata | ![]() |
385 species ![]() |
212 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
211 homologs ![]() |
Sarcopterygii | ![]() |
253 species ![]() |
210 homologs ![]() |
Tetrapoda | ![]() |
251 species ![]() |
209 homologs ![]() |
Anura | ![]() |
3 species ![]() |
6 homologs ![]() |
Frog | ![]() |
1 species ![]() |
5 homologs (dupl. node) ![]() 4 homologs (dupl. node) ![]() 3 homologs (dupl. node) ![]() 2 homologs (dupl. node) ![]() 1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'