Root species for ENSGT00390000017746 (Emydidae) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 420 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 416 homologs |
Vertebrata | ~550 Mya | 389 species | 415 homologs |
Gnathostomata | ~473 Mya | 385 species | 411 homologs |
Euteleostomi | ~420 Mya | 383 species | 409 homologs |
Sarcopterygii | ~400 Mya | 253 species | 258 homologs |
Tetrapoda | ~359 Mya | 251 species | 256 homologs |
Amniota | ~326 Mya | 247 species | 252 homologs |
Sauria | ~267 Mya | 53 species | 53 homologs |
Archelosauria | ~250 Mya | 37 species | 37 homologs |
Cryptodira | ~161 Mya | 9 species | 9 homologs |
Testudinoidea | ~80 Mya | 7 species | 7 homologs |
Emydidae | ~40 Mya | 3 species | 3 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'