Root species for ENSGT00950000182941.a.a.b.e.a.b (Perciformes) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 1966 homologs (oldest homol.) |
Chordata | ~550 Mya | 393 species | 1963 homologs |
Vertebrata | ~550 Mya | 389 species | 1962 homologs |
Gnathostomata | ~473 Mya | 385 species | 1957 homologs (dupl. node) 1091 homologs (dupl. node) 1074 homologs (dupl. node) 578 homologs |
Euteleostomi | ~420 Mya | 383 species | 576 homologs |
Actinopterygii | ~386 Mya | 129 species | 324 homologs |
Neopterygii | ~314 Mya | 127 species | 322 homologs |
Osteoglossocephalai | ~267 Mya | 125 species | 320 homologs (dupl. node) 312 homologs (dupl. node) 174 homologs |
Clupeocephala | ~229 Mya | 121 species | 170 homologs (dupl. node) 145 homologs |
Euteleosteomorpha | ~206 Mya | 101 species | 119 homologs |
Acanthomorphata | ~148 Mya | 87 species | 85 homologs |
Euacanthomorphacea | ~132 Mya | 85 species | 84 homologs |
Percomorphaceae | ~128 Mya | 83 species | 82 homologs |
Percomorphaceae_B | ~128 Mya | 81 species | 80 homologs |
Percomorphaceae_C | ~128 Mya | 35 species | 34 homologs |
Eupercaria | ~110 Mya | 19 species | 20 homologs |
Eupecaria_A | ~110 Mya | 15 species | 16 homologs |
Eupecaria_B | ~110 Mya | 13 species | 14 homologs |
Perciformes | ~94 Mya | 7 species | 8 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'