Root species for RPL5 (ENSLLTG00000018075) (Blue-lipped sea krait) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | 1471 homologs (oldest homol.) |
Bilateria | ~580 Mya | 397 species | 1469 homologs |
Chordata | ~550 Mya | 393 species | 1465 homologs |
Vertebrata | ~550 Mya | 389 species | 1461 homologs |
Gnathostomata | ~473 Mya | 385 species | 1457 homologs |
Euteleostomi | ~420 Mya | 383 species | 1453 homologs |
Sarcopterygii | ~400 Mya | 253 species | 1133 homologs |
Tetrapoda | ~359 Mya | 251 species | 1127 homologs |
Amniota | ~326 Mya | 247 species | 1121 homologs (dupl. node) 1114 homologs (dupl. node) 966 homologs |
Sauria | ~267 Mya | 53 species | 57 homologs |
Lepidosauria | ~251 Mya | 15 species | 17 homologs |
Episquamata | ~178 Mya | 13 species | 15 homologs |
Toxicofera | ~168 Mya | 9 species | 11 homologs |
Elapidae | ~32 Mya | 7 species | 7 homologs |
Elapidae_a | ~32 Mya | 5 species | 5 homologs |
Blue-lipped sea krait | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'