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Root species for ENSGT00940000155503.b (Carangaria_A) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
399 species ![]() |
|
Bilateria | ![]() |
397 species ![]() |
|
Chordata | ![]() |
393 species ![]() |
|
Vertebrata | ![]() |
389 species ![]() |
604 homologs (oldest homol.) ![]() |
Gnathostomata | ![]() |
385 species ![]() |
597 homologs ![]() |
Euteleostomi | ![]() |
383 species ![]() |
595 homologs ![]() |
Actinopterygii | ![]() |
129 species ![]() |
316 homologs ![]() |
Neopterygii | ![]() |
127 species ![]() |
314 homologs ![]() |
Osteoglossocephalai | ![]() |
125 species ![]() |
312 homologs (dupl. node) ![]() 148 homologs ![]() |
Clupeocephala | ![]() |
121 species ![]() |
147 homologs ![]() |
Euteleosteomorpha | ![]() |
101 species ![]() |
121 homologs ![]() |
Acanthomorphata | ![]() |
87 species ![]() |
93 homologs ![]() |
Euacanthomorphacea | ![]() |
85 species ![]() |
91 homologs ![]() |
Percomorphaceae | ![]() |
83 species ![]() |
90 homologs ![]() |
Percomorphaceae_B | ![]() |
81 species ![]() |
89 homologs ![]() |
Percomorphaceae_C | ![]() |
35 species ![]() |
34 homologs ![]() |
Percomorphaceae_D | ![]() |
15 species ![]() |
14 homologs ![]() |
Carangaria | ![]() |
9 species ![]() |
9 homologs ![]() |
Carangaria_A | ![]() |
5 species ![]() |
5 homologs ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'