Root species for ENSGT00390000003477 (Osteoglossocephalai) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | 423 homologs (oldest homol.) |
Bilateria | ~580 Mya | 397 species | 421 homologs |
Chordata | ~550 Mya | 393 species | 417 homologs |
Vertebrata | ~550 Mya | 389 species | 413 homologs |
Gnathostomata | ~473 Mya | 385 species | 409 homologs |
Euteleostomi | ~420 Mya | 383 species | 407 homologs |
Actinopterygii | ~386 Mya | 129 species | 137 homologs |
Neopterygii | ~314 Mya | 127 species | 135 homologs |
Osteoglossocephalai | ~267 Mya | 125 species | 133 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'