Theria	ANCESTRAL SPECIES	30	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.b	ENSGT00940000158215	ENSGT00390000009819.a.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a	ENSGT00530000064170.e
Eutheria	ANCESTRAL SPECIES	7	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00390000009819.a.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Primates	ANCESTRAL SPECIES	9	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a.j	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a.j	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00910000146874	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.a.a.b.a #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a #15	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.a.a.b.a.a #9	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a #15	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00940000156665	ENSGT00940000157772
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.a.a.b.a.a #9	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a #15	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00940000156665	ENSGT00940000157772
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT01000000214430.a.a.a.a.a.a.c #8	ENSGT01000000214430.a.a.a.a.a.b.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.a.b.a.a.a.a #10	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.h #15	ENSGT01000000214430.a.a.a.a.a.a.d ##7	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.g #17	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00940000156665	ENSGT00940000157772
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT01000000214430.a.a.a.a.a.b.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.a.b.a.a.a.a #10	ENSGT01000000214430.a.a.a.a.a.b.a.a.b #11	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.h #15	ENSGT01000000214430.a.a.a.a.a.a.d ##7	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.g #17	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00910000147619	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000164672.b	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00950000182767.b.b.d.hb.a.a.b
Macaca	ANCESTRAL SPECIES	10	ENSGT01000000214430.a.a.a.a.a.b.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.a.b.a.a.a.a #10	ENSGT01000000214430.a.a.a.a.a.b.a.a.b #11	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.h #15	ENSGT01000000214430.a.a.a.a.a.a.d ##7	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.g #17	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00910000147619	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00950000183134.c.b.p	ENSGT00390000009366.c.a.b
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a.c #8	ENSGT01000000214430.a.a.a.a.a.b.a.a.a.b.a #9	ENSGT01000000214430.a.a.a.a.a.b.a.a.b #11	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.h #15	ENSGT01000000214430.a.a.a.a.a.a.d ##7	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.g #17	ENSGT00940000156051.mc.b #18	ENSGT00950000182991.B.yb.a #19	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00910000147619	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.a.a.a.b.b.a #33	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00390000009366.c.a.b
Rhesus	MODERN SPECIES	6	IFNB1 (ENSMMUG00000019067) #7	IFNW1 (ENSMMUG00000058193) #8	ENSMMUG00000058435 #9	IFNA10 (ENSMMUG00000058565) #10	ENSMMUG00000052729 #11	IFNA14 (ENSMMUG00000058900) #12	KLHL9 (ENSMMUG00000010959) #13	IFNA6 (ENSMMUG00000054514) #14	ENSMMUG00000055493 #15	IFNA8 (ENSMMUG00000063809) #16	IFNA13 (ENSMMUG00000051298) #17	ENSMMUG00000063104 #18	MTAP (ENSMMUG00000001137) #19	CDKN2B (ENSMMUG00000001134) #20	ENSMMUG00000065070 #21	DMRTA1 (ENSMMUG00000054138) #22	ENSMMUG00000053595 #23	ELAVL2 (ENSMMUG00000010038) #24	IZUMO3 (ENSMMUG00000059096) #25	TUSC1 (ENSMMUG00000059471) #26	ENSMMUG00000059255 #27	CAAP1 (ENSMMUG00000006073) #28	PLAA (ENSMMUG00000064752) #29	LRRC19 (ENSMMUG00000006079) #30	IFT74 (ENSMMUG00000006076) #31	TEK (ENSMMUG00000006080) #32	ENSMMUG00000053713 #33	EQTN (ENSMMUG00000061449) #34	IFNK (ENSMMUG00000064869) #35	MOB3B (ENSMMUG00000062843) #36	C9orf72 (ENSMMUG00000016508) #37
Pig-tailed macaque	MODERN SPECIES	265					ENSMNEG00000043566 #10	IFNA14 (ENSMNEG00000041515) #12	KLHL9 (ENSMNEG00000031087) #13	IFNA6 (ENSMNEG00000004784) #14	ENSMNEG00000035314 #15	ENSMNEG00000038078 #17	IFNE (ENSMNEG00000038701) ##7	MTAP (ENSMNEG00000043027) #19	CDKN2A (ENSMNEG00000044907)	CDKN2B (ENSMNEG00000041291) #20	ENSMNEG00000028735	DMRTA1 (ENSMNEG00000029016) #22	ENSMNEG00000028981	ELAVL2 (ENSMNEG00000032526) #24	IZUMO3 (ENSMNEG00000037442) #25
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a.c #8	ENSGT01000000214430.a.a.a.a.a.b.a.a.b #11	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT01000000214430.a.a.a.a.a.b.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.g #17	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00910000147619	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000164672.b	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT00390000005644 #37	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00940000156665
Olive baboon	MODERN SPECIES	4	HACD4 (ENSPANG00000025246)	IFNB1 (ENSPANG00000000084) #7	IFNW1 (ENSPANG00000046967) #8	ENSPANG00000032030 #11	IFNA14 (ENSPANG00000041833) #12	KLHL9 (ENSPANG00000025244) #13	ENSPANG00000045049	IFNA6 (ENSPANG00000048129) #14	IFNA8 (ENSPANG00000042591) #16	ENSPANG00000050899 #17	ENSPANG00000045683	MTAP (ENSPANG00000025242) #19	ENSPANG00000030138	ENSPANG00000048816 ##23	ENSPANG00000045037	DMRTA1 (ENSPANG00000029682) #22	ELAVL2 (ENSPANG00000025263) #24	ENSPANG00000050863 ##23	ENSPANG00000039181 ##23	ENSPANG00000045330 ##23	IZUMO3 (ENSPANG00000025266) #25	TUSC1 (ENSPANG00000049859) #26	ENSPANG00000039634	ENSPANG00000041329	CAAP1 (ENSPANG00000025265) #28	PLAA (ENSPANG00000025264) #29	ENSPANG00000044640 ##33	IFT74 (ENSPANG00000025276) #31	ENSPANG00000049233 ##23	LRRC19 (ENSPANG00000036052) #30	TEK (ENSPANG00000025275) #32
Cercopithecinae_d	ANCESTRAL SPECIES	172							ENSGT01000000214430.a.a.a.a.a.b.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.g #17	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00910000147619	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT00390000005644 #37	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00940000156665
Sooty mangabey	MODERN SPECIES	170									KLHL9 (ENSCATG00000015406) #13	IFNA6 (ENSCATG00000022888) #14	IFNE (ENSCATG00000042094) ##7	MTAP (ENSCATG00000041286) #19	CDKN2A (ENSCATG00000009720)	CDKN2B (ENSCATG00000036130) #20	ENSCATG00000044350	DMRTA1 (ENSCATG00000034725) #22	ENSCATG00000039863	ELAVL2 (ENSCATG00000012522) #24	IZUMO3 (ENSCATG00000042543) #25	CAAP1 (ENSCATG00000045198) #28	PLAA (ENSCATG00000019480) #29	ENSCATG00000040114	LRRC19 (ENSCATG00000034126) #30	IFT74 (ENSCATG00000033075) #31	TEK (ENSCATG00000033710) #32	EQTN (ENSCATG00000010354) #34	MOB3B (ENSCATG00000039675) #36	C9orf72 (ENSCATG00000021978) #37	ENSCATG00000036469	LINGO2 (ENSCATG00000021429)	ENSCATG00000042284
Drill	MODERN SPECIES	1731																DMRTA1 (ENSMLEG00000027732) #22	ENSMLEG00000027781 #24
Vervet Monkey	MODERN SPECIES	3	IFNB1 (ENSCSAG00000000432) #7	IFNW1 (ENSCSAG00000000433) #8	ENSCSAG00000000434 #9	ENSCSAG00000000435 #10	ENSCSAG00000000436 #10	IFNA14 (ENSCSAG00000000437) #12	IFNA6 (ENSCSAG00000000438) #14	ENSCSAG00000000439 #15	IFNA2 (ENSCSAG00000009666) ##7	IFNA8 (ENSCSAG00000009673) #16	ENSCSAG00000000440 #17	IFNE (ENSCSAG00000009680) ##7	MTAP (ENSCSAG00000009686) #19	ENSCSAG00000009696	CDKN2B (ENSCSAG00000009704) #20	DMRTA1 (ENSCSAG00000009709) #22	ELAVL2 (ENSCSAG00000009718) #24	IZUMO3 (ENSCSAG00000009727) #25	TUSC1 (ENSCSAG00000000441) #26	CAAP1 (ENSCSAG00000009734) #28	PLAA (ENSCSAG00000009742) #29	LRRC19 (ENSCSAG00000009756) #30	IFT74 (ENSCSAG00000009766) #31	TEK (ENSCSAG00000009773) #32	ENSCSAG00000000442	EQTN (ENSCSAG00000009785) #34	IFNK (ENSCSAG00000000443) #35	MOB3B (ENSCSAG00000009793) #36	C9orf72 (ENSCSAG00000009804) #37	ACTB (ENSCSAG00000000444)	LINGO2 (ENSCSAG00000000445)
Rhinopithecus	ANCESTRAL SPECIES	582									ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22
Black snub-nosed monkey	MODERN SPECIES	94										KLHL9 (ENSRBIG00000028501) #13	IFNA8 (ENSRBIG00000029844) #16	IFNE (ENSRBIG00000042935) ##7	MTAP (ENSRBIG00000039442) #19	ENSRBIG00000033170	ENSRBIG00000030222	DMRTA1 (ENSRBIG00000034841) #22
Golden snub-nosed monkey	MODERN SPECIES	2851												MTAP (ENSRROG00000004628) #19	CDKN2A (ENSRROG00000037214)	CDKN2B (ENSRROG00000037735) #20	ENSRROG00000042295	DMRTA1 (ENSRROG00000034145) #22
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.a.a.b.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.a ##7	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a #15	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00940000156665	ENSGT00940000157772
Hominidae	ANCESTRAL SPECIES	10	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.a.a.b.a.a.d.b #9	ENSGT01000000214430.a.a.a.a.a.b.a.a.d.a #9	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT01000000214430.a.a.a.a.a.b.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.a ##7	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a #15	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00940000156665	ENSGT00940000157772
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT01000000214430.a.a.a.a.a.b.a.a.d.b #9	ENSGT01000000214430.a.a.a.a.a.b.a.a.d.a #9	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT01000000214430.a.a.a.a.a.b.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.b.a #15	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.a ##7	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.a #15	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00940000156665	ENSGT00940000157772
Homo/Pan group	ANCESTRAL SPECIES	27	ENSGT01000000214430.a.a.a.a.a.b.a.a.c #9	ENSGT01000000214430.a.a.a.a.a.b.a.a.d.a.c.b #9	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT01000000214430.a.a.a.a.a.b.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.b.a #15	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.a ##7	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.a #15	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00940000156665	ENSGT00940000157772
Pan	ANCESTRAL SPECIES	26	ENSGT01000000214430.a.a.a.a.a.b.a.a.d.a.d.a #9	ENSGT01000000214430.a.a.a.a.a.b.a.a.d.a.c.b #9	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT01000000214430.a.a.a.a.a.b.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.b.b.b #14	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.a.b #15	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.a ##7	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.b.a.a.a #15	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.yb.a #19	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000153593.c.b.d.a	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00950000182767.b.b.d.hb.a.a.b	ENSGT00940000156665	ENSGT00940000157772
Chimpanzee	MODERN SPECIES	22	IFNA21 (ENSPTRG00000048249) #9	IFNA17 (ENSPTRG00000045595) #9	IFNA14 (ENSPTRG00000044822) #12	IFNA5 (ENSPTRG00000048038) ##7	KLHL9 (ENSPTRG00000022846) #13	IFNA6 (ENSPTRG00000041238) #14	ENSPTRG00000050673 #15	IFNA2 (ENSPTRG00000020820) ##7	IFNA8 (ENSPTRG00000045477) #16	ENSPTRG00000043432 #15	IFNE (ENSPTRG00000020823) ##7	MTAP (ENSPTRG00000020825) #19	CDKN2A (ENSPTRG00000020827)	CDKN2B (ENSPTRG00000049465) #20	ENSPTRG00000043190	DMRTA1 (ENSPTRG00000050201) #22	MTRNR2L14 (ENSPTRG00000042327)	ENSPTRG00000051343	ENSPTRG00000047423	ELAVL2 (ENSPTRG00000020830) #24	IZUMO3 (ENSPTRG00000029308) #25	TUSC1 (ENSPTRG00000029307) #26	CAAP1 (ENSPTRG00000020831) #28	PLAA (ENSPTRG00000020832) #29	IFT74 (ENSPTRG00000020833) #31	LRRC19 (ENSPTRG00000020834) #30	TEK (ENSPTRG00000020835) #32	EQTN (ENSPTRG00000020836) #34	MOB3B (ENSPTRG00000020837) #36	IFNK (ENSPTRG00000020838) #35	C9orf72 (ENSPTRG00000020839) #37
Bonobo	MODERN SPECIES	22	IFNA10 (ENSPPAG00000009659) #9	IFNA7 (ENSPPAG00000033124) #9	IFNA17 (ENSPPAG00000005706) #9	IFNA14 (ENSPPAG00000006950) #12	IFNA5 (ENSPPAG00000009372) ##7	KLHL9 (ENSPPAG00000039116) #13	IFNA6 (ENSPPAG00000008243) #14	ENSPPAG00000008684 #15	IFNA2 (ENSPPAG00000021138) ##7	IFNA8 (ENSPPAG00000011307) #16	ENSPPAG00000031511 #15	IFNE (ENSPPAG00000011111) ##7	MTAP (ENSPPAG00000038109) #19	ENSPPAG00000038507	CDKN2B (ENSPPAG00000037066) #20	DMRTA1 (ENSPPAG00000031441) #22	ELAVL2 (ENSPPAG00000041539) #24	IZUMO3 (ENSPPAG00000043400) #25	ENSPPAG00000035721 #26	CAAP1 (ENSPPAG00000037255) #28	PLAA (ENSPPAG00000040082) #29	IFT74 (ENSPPAG00000000306) #31	LRRC19 (ENSPPAG00000012895) #30	TEK (ENSPPAG00000034261) #32	EQTN (ENSPPAG00000042132) #34	MOB3B (ENSPPAG00000042835) #36	C9orf72 (ENSPPAG00000028395) #37	ENSPPAG00000000049	LINGO2 (ENSPPAG00000033214)	ENSPPAG00000031228	ACO1 (ENSPPAG00000033498)
Human	MODERN SPECIES	21	IFNA10 (ENSG00000186803) #9	IFNA16 (ENSG00000147885) #9	IFNA17 (ENSG00000234829) #9	IFNA14 (ENSG00000228083) #12	IFNA5 (ENSG00000147873) ##7	KLHL9 (ENSG00000198642) #13	IFNA6 (ENSG00000120235) #14	IFNA13 (ENSG00000233816) #15	IFNA2 (ENSG00000188379) ##7	IFNA8 (ENSG00000120242) #16	IFNA1 (ENSG00000197919) #15	IFNE (ENSG00000184995) ##7	MTAP (ENSG00000099810) #19	CDKN2A (ENSG00000147889)	CDKN2B (ENSG00000147883) #20	DMRTA1 (ENSG00000176399) #22	ELAVL2 (ENSG00000107105) #24	IZUMO3 (ENSG00000205442) #25	TUSC1 (ENSG00000198680) #26	CAAP1 (ENSG00000120159) #28	PLAA (ENSG00000137055) #29	IFT74 (ENSG00000096872) #31	LRRC19 (ENSG00000184434) #30	TEK (ENSG00000120156) #32	EQTN (ENSG00000120160) #34	MOB3B (ENSG00000120162) #36	IFNK (ENSG00000147896) #35	C9orf72 (ENSG00000147894) #37	LINGO2 (ENSG00000174482)	ACO1 (ENSG00000122729)	RIGI (ENSG00000107201)
Gorilla	MODERN SPECIES	22	ENSGGOG00000040005	SLC24A2 (ENSGGOG00000016544)	MLLT3 (ENSGGOG00000004505)	FOCAD (ENSGGOG00000008191)	HACD4 (ENSGGOG00000016141)	IFNB1 (ENSGGOG00000025576) #7	IFNW1 (ENSGGOG00000012076) #8	KLHL9 (ENSGGOG00000023406) #13	IFNA1 (ENSGGOG00000038600) #15	IFNA2 (ENSGGOG00000026395) ##7	IFNA13 (ENSGGOG00000036801) #15	IFNE (ENSGGOG00000015760) ##7	MTAP (ENSGGOG00000012929) #19	CDKN2A (ENSGGOG00000024454)	CDKN2B (ENSGGOG00000042843) #20	DMRTA1 (ENSGGOG00000009094) #22	ELAVL2 (ENSGGOG00000003678) #24	IZUMO3 (ENSGGOG00000011508) #25	TUSC1 (ENSGGOG00000004137) #26	CAAP1 (ENSGGOG00000015329) #28	ENSGGOG00000016635 #29	LRRC19 (ENSGGOG00000036824) #30	IFT74 (ENSGGOG00000007259) #31	TEK (ENSGGOG00000015924) #32	EQTN (ENSGGOG00000013734) #34	MOB3B (ENSGGOG00000004602) #36	IFNK (ENSGGOG00000027413) #35	C9orf72 (ENSGGOG00000006338) #37	ENSGGOG00000036154	LINGO2 (ENSGGOG00000013148)	ENSGGOG00000006944
Orangutan	MODERN SPECIES	22	IFNA16 (ENSPPYG00000031165) #9	ENSPPYG00000035433 #9	ENSPPYG00000040684 #9	ENSPPYG00000030191 #9	IFNA14 (ENSPPYG00000032470) #12	IFNA5 (ENSPPYG00000032823) ##7	IFNA6 (ENSPPYG00000033933) #14	ENSPPYG00000035412 #15	IFNA8 (ENSPPYG00000033446) #16	ENSPPYG00000035735 #15	ENSPPYG00000035351 ##23	MTAP (ENSPPYG00000019171) #19	ENSPPYG00000030927	CDKN2A (ENSPPYG00000019169)	CDKN2B (ENSPPYG00000019168) #20	DMRTA1 (ENSPPYG00000019167) #22	ELAVL2 (ENSPPYG00000019166) #24	IZUMO3 (ENSPPYG00000038165) #25	TUSC1 (ENSPPYG00000019164) #26	CAAP1 (ENSPPYG00000025841) #28	PLAA (ENSPPYG00000019161) #29	LRRC19 (ENSPPYG00000019160) #30	IFT74 (ENSPPYG00000019159) #31	TEK (ENSPPYG00000019158) #32	EQTN (ENSPPYG00000019157) #34	IFNK (ENSPPYG00000019155) #35	MOB3B (ENSPPYG00000019156) #36	C9orf72 (ENSPPYG00000019154) #37	LINGO2 (ENSPPYG00000019153)	ACO1 (ENSPPYG00000019150)	RIGI (ENSPPYG00000019149)
Gibbon	MODERN SPECIES	23	CDC26 (ENSNLEG00000016645)	ENSNLEG00000033789	FKBP15 (ENSNLEG00000016599)	SLC31A2 (ENSNLEG00000027922)	ZFP37 (ENSNLEG00000016581)	ZNF883 (ENSNLEG00000018988)	SLC46A2 (ENSNLEG00000016574)	SNX30 (ENSNLEG00000028611)	INIP (ENSNLEG00000016554)	ENSNLEG00000016552	ENSNLEG00000031382	PTBP3 (ENSNLEG00000029589)	SUSD1 (ENSNLEG00000016452)	UGCG (ENSNLEG00000016446)	SHOC1 (ENSNLEG00000016401)	DMRTA1 (ENSNLEG00000035351) #22	ELAVL2 (ENSNLEG00000016382) #24	IZUMO3 (ENSNLEG00000016378) #25	CAAP1 (ENSNLEG00000016367) #28	PLAA (ENSNLEG00000016346) #29	ENSNLEG00000016344 #30	ENSNLEG00000016321 #31	TEK (ENSNLEG00000016282) #32	FAM205A (ENSNLEG00000016276)	TOPORS (ENSNLEG00000005371)	ENSNLEG00000030141	NDUFB6 (ENSNLEG00000005361)	TAF1L (ENSNLEG00000005354)	TMEM215 (ENSNLEG00000031457)	APTX (ENSNLEG00000032184)	ENSNLEG00000005268
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00390000009819.a.b.a.a.b.a.j	ENSGT00730000110920.b.a.b	ENSGT00910000146874	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.a #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Cebidae	ANCESTRAL SPECIES	7	ENSGT00950000182920.b.a.b.a.b.i.a	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a.j	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a	ENSGT00530000064170.e
Marmoset	MODERN SPECIES		MLLT3 (ENSCJAG00000008994)	FOCAD (ENSCJAG00000008887)	HACD4 (ENSCJAG00000008870)	IFNW1 (ENSCJAG00000044329) #8	ENSCJAG00000082610 ##7	ENSCJAG00000073103	ENSCJAG00000073023 #12	ENSCJAG00000083249 #15	KLHL9 (ENSCJAG00000022401) #13	ENSCJAG00000060785	ENSCJAG00000008021 #19	ENSCJAG00000051705	CDKN2B (ENSCJAG00000008048) #20	ENSCJAG00000058382	ENSCJAG00000022751	DMRTA1 (ENSCJAG00000008059) #22	ENSCJAG00000079951	ENSCJAG00000065871	ELAVL2 (ENSCJAG00000008064) #24	ENSCJAG00000060971	IZUMO3 (ENSCJAG00000080921) #25	TUSC1 (ENSCJAG00000043194) #26	ENSCJAG00000085985	ENSCJAG00000056845	ENSCJAG00000059870	CAAP1 (ENSCJAG00000007987) #28	PLAA (ENSCJAG00000007921) #29	ENSCJAG00000053641	ENSCJAG00000085474	IFT74 (ENSCJAG00000018308) #31	LRRC19 (ENSCJAG00000064085) #30
Cebidae_a	ANCESTRAL SPECIES	84	ENSGT00950000182920.b.a.b.a.b.i.a	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a.j	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.a.a.a.a.b.b.a.b.b #16	ENSGT01000000214430.a.a.a.a.a.b.b.a.a #12	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25
Capuchin	MODERN SPECIES	186													MTAP (ENSCCAG00000019057) #19	CDKN2A (ENSCCAG00000034154)	CDKN2B (ENSCCAG00000023972) #20	DMRTA1 (ENSCCAG00000027494) #22	ELAVL2 (ENSCCAG00000024508) #24	IZUMO3 (ENSCCAG00000037648) #25
Bolivian squirrel monkey	MODERN SPECIES	69	PLIN2 (ENSSBOG00000030779)	DENND4C (ENSSBOG00000033170)	ENSSBOG00000018471	ACER2 (ENSSBOG00000032724)	SLC24A2 (ENSSBOG00000027426)	MLLT3 (ENSSBOG00000029045)	FOCAD (ENSSBOG00000024709)	HACD4 (ENSSBOG00000004033)	ENSSBOG00000012028	IFNA14 (ENSSBOG00000033464) #12	KLHL9 (ENSSBOG00000030862) #13	ENSSBOG00000026349 #8	MTAP (ENSSBOG00000020187) #19	CDKN2A (ENSSBOG00000030194)	CDKN2B (ENSSBOG00000028011) #20	DMRTA1 (ENSSBOG00000020210) #22	ELAVL2 (ENSSBOG00000028114) #24	IZUMO3 (ENSSBOG00000031342) #25	F5 (ENSSBOG00000020664)	SLC19A2 (ENSSBOG00000022009)	CCDC181 (ENSSBOG00000036053)	BLZF1 (ENSSBOG00000033672)	NME7 (ENSSBOG00000034004)	ATP1B1 (ENSSBOG00000032878)	DPT (ENSSBOG00000024429)	ENSSBOG00000035482	TBX19 (ENSSBOG00000029923)	SFT2D2 (ENSSBOG00000031966)	TIPRL (ENSSBOG00000030225)	GPR161 (ENSSBOG00000030060)	DCAF6 (ENSSBOG00000034143)
Mas night monkey	MODERN SPECIES	835	ENSANAG00000031170	DENND4C (ENSANAG00000025263)	ACER2 (ENSANAG00000024432)	ENSANAG00000025101	SLC24A2 (ENSANAG00000029933)	MLLT3 (ENSANAG00000032095)	FOCAD (ENSANAG00000029314)	HACD4 (ENSANAG00000027847)	ENSANAG00000031381 #9	KLHL9 (ENSANAG00000033732) #13	IFNE (ENSANAG00000027745) ##7	MTAP (ENSANAG00000029387) #19	ENSANAG00000019784	CDKN2A (ENSANAG00000025540)	CDKN2B (ENSANAG00000018770) #20	DMRTA1 (ENSANAG00000021248) #22	ENSANAG00000029023	ELAVL2 (ENSANAG00000032553) #24	IZUMO3 (ENSANAG00000021921) #25	ENSANAG00000022652	ENSANAG00000022457
Tarsier	MODERN SPECIES	7025																DMRTA1 (ENSTSYG00000011375) #22
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00390000009819.a.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Lemuriformes	ANCESTRAL SPECIES	34	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.b	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00390000009819.a.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Mouse lemur	MODERN SPECIES	1	HAUS6 (ENSMICG00000033370)	PLIN2 (ENSMICG00000005214)	DENND4C (ENSMICG00000007242)	ENSMICG00000007262	ACER2 (ENSMICG00000035197)	SLC24A2 (ENSMICG00000034280)	ENSMICG00000028503	ENSMICG00000036265	MLLT3 (ENSMICG00000035047)	FOCAD (ENSMICG00000009888)	ENSMICG00000014403	KLHL9 (ENSMICG00000002688) #13	MTAP (ENSMICG00000015072) #19	CDKN2A (ENSMICG00000005835)	CDKN2B (ENSMICG00000031833) #20	DMRTA1 (ENSMICG00000046386) #22	ELAVL2 (ENSMICG00000001558) #24	IZUMO3 (ENSMICG00000011839) #25	ENSMICG00000045076	PCSK5 (ENSMICG00000014046)	ENSMICG00000002750	OSTF1 (ENSMICG00000007556)	NMRK1 (ENSMICG00000007552)	CARNMT1 (ENSMICG00000007542)	C9orf40 (ENSMICG00000028036)	TRPM6 (ENSMICG00000007514)	RORB (ENSMICG00000007512)	ANXA1 (ENSMICG00000013045)	ENSMICG00000027399	ENSMICG00000045378	ENSMICG00000007394
Lemuriformes_a	ANCESTRAL SPECIES	35	ENSGT00950000183031.B.e.b	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.b	ENSGT00940000158215	ENSGT00390000009819.a.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Greater bamboo lemur	MODERN SPECIES	12													ENSPSMG00000011554 #19	CDKN2A (ENSPSMG00000011521)	CDKN2B (ENSPSMG00000011508) #20	DMRTA1 (ENSPSMG00000011495) #22	ELAVL2 (ENSPSMG00000011481) #24	ENSPSMG00000011445	IZUMO3 (ENSPSMG00000011440) #25	TUSC1 (ENSPSMG00000011421) #26	CAAP1 (ENSPSMG00000011411) #28	PLAA (ENSPSMG00000011393) #29	LRRC19 (ENSPSMG00000011368) #30	IFT74 (ENSPSMG00000011354) #31	TEK (ENSPSMG00000011306) #32	EQTN (ENSPSMG00000011157) #34	MOB3B (ENSPSMG00000011151) #36	IFNK (ENSPSMG00000011141) #35	C9orf72 (ENSPSMG00000011129) #37	LINGO2 (ENSPSMG00000011106)	ACO1 (ENSPSMG00000011080)
Coquerels sifaka	MODERN SPECIES	1031	SAXO1 (ENSPCOG00000021103)	RRAGA (ENSPCOG00000013740)	HAUS6 (ENSPCOG00000026237)	PLIN2 (ENSPCOG00000027217)	DENND4C (ENSPCOG00000000944)	ENSPCOG00000019415	ACER2 (ENSPCOG00000019863)	SLC24A2 (ENSPCOG00000011721)	MLLT3 (ENSPCOG00000013614)	FOCAD (ENSPCOG00000017012)	HACD4 (ENSPCOG00000028043)	IFNE (ENSPCOG00000015118) ##7	MTAP (ENSPCOG00000017099) #19	CDKN2A (ENSPCOG00000025494)	CDKN2B (ENSPCOG00000027261) #20	DMRTA1 (ENSPCOG00000021875) #22
Bushbaby	MODERN SPECIES	121	FOCAD (ENSOGAG00000007818)	HACD4 (ENSOGAG00000007825)	IFNB1 (ENSOGAG00000007828) #7	ENSOGAG00000025328 #9	KLHL9 (ENSOGAG00000025932) #13	ENSOGAG00000027157 #9	ENSOGAG00000033309	ENSOGAG00000028717 #9	ENSOGAG00000030880 #9	ENSOGAG00000027191 #9	IFNE (ENSOGAG00000013610) ##7	MTAP (ENSOGAG00000007889) #19	CDKN2A (ENSOGAG00000007892)	CDKN2B (ENSOGAG00000011002) #20	ENSOGAG00000033113	DMRTA1 (ENSOGAG00000012178) #22	ELAVL2 (ENSOGAG00000016228) #24	TUSC1 (ENSOGAG00000031514) #26	CAAP1 (ENSOGAG00000005033) #28	PLAA (ENSOGAG00000006317) #29	LRRC19 (ENSOGAG00000006322) #30	IFT74 (ENSOGAG00000006320) #31	TEK (ENSOGAG00000016749) #32	ENSOGAG00000032707	EQTN (ENSOGAG00000016757) #34	MOB3B (ENSOGAG00000029287) #36	IFNK (ENSOGAG00000002205) #35	C9orf72 (ENSOGAG00000002207) #37	LINGO2 (ENSOGAG00000033126)
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00390000009819.a.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Glires	ANCESTRAL SPECIES	9	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00390000009819.a.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Rodentia	ANCESTRAL SPECIES	9	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00390000009819.a.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Muroidea	ANCESTRAL SPECIES	1	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b.p.a #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b.o #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.p.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b.p.a #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b.o #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.p.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00900000143271	ENSGT00940000159251
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00950000182920.b.a.b.a.b	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.o #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00900000143271	ENSGT00940000159251
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00950000183031.B.e.b	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.b	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b.o #9	ENSGT00940000154359.e #13	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00900000143271	ENSGT00940000159251	ENSGT00940000155417.a.b
Northern American deer mouse	MODERN SPECIES	11	ENSPEMG00000025225 #9	ENSPEMG00000030502 #9	ENSPEMG00000024802 #9	Klhl9 (ENSPEMG00000013714) #13	ENSPEMG00000030301 #9	ENSPEMG00000027437 #9	ENSPEMG00000027847 #9	ENSPEMG00000024899 #9	ENSPEMG00000026834 #9	Ifne (ENSPEMG00000029831) ##7	ENSPEMG00000007998 #19	ENSPEMG00000029915	ENSPEMG00000010842	ENSPEMG00000028835	Cdkn2b (ENSPEMG00000025789) #20	Dmrta1 (ENSPEMG00000008771) #22	Elavl2 (ENSPEMG00000014101) #24	ENSPEMG00000013102	ENSPEMG00000031412	Izumo3 (ENSPEMG00000019058) #25	Caap1 (ENSPEMG00000000545) #28	Plaa (ENSPEMG00000009992) #29	Ift74 (ENSPEMG00000017074) #31	Lrrc19 (ENSPEMG00000017681) #30	Tek (ENSPEMG00000000588) #32	Eqtn (ENSPEMG00000016567) #34	Mysm1 (ENSPEMG00000011781)	ENSPEMG00000012194	Jun (ENSPEMG00000014041)	Fggy (ENSPEMG00000007085)	ENSPEMG00000026283
Prairie vole	MODERN SPECIES	1	Focad (ENSMOCG00000016725)	Hacd4 (ENSMOCG00000009794)	ENSMOCG00000007135 #9	ENSMOCG00000003596 #9	ENSMOCG00000003333 #9	ENSMOCG00000002912 #9	ENSMOCG00000022936 #9	Klhl9 (ENSMOCG00000003966) #13	ENSMOCG00000004176 #9	ENSMOCG00000003427 #9	ENSMOCG00000004406 #9	ENSMOCG00000003644 #9	Mtap (ENSMOCG00000012400) #19	ENSMOCG00000013892	Cdkn2b (ENSMOCG00000015669) #20	Dmrta1 (ENSMOCG00000002337) #22	ENSMOCG00000004079	Elavl2 (ENSMOCG00000016960) #24	ENSMOCG00000018411	Izumo3 (ENSMOCG00000019669) #25	Tusc1 (ENSMOCG00000019464) #26	ENSMOCG00000003689	Caap1 (ENSMOCG00000012535) #28	Plaa (ENSMOCG00000017762) #29	Ift74 (ENSMOCG00000002321) #31	Lrrc19 (ENSMOCG00000008422) #30	Tek (ENSMOCG00000017310) #32	Eqtn (ENSMOCG00000018858) #34	Mysm1 (ENSMOCG00000001327)	Jun (ENSMOCG00000006483)	Fggy (ENSMOCG00000017533)
Cricetinae	ANCESTRAL SPECIES	5											ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.fb #19	ENSGT00950000182991.B.gb #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00900000143271	ENSGT00940000159251
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001007554 #9	ENSCGRG00001006905 #9	ENSCGRG00001006765 #9	ENSCGRG00001005704 #9	ENSCGRG00001009627 #9	ENSCGRG00001009477 #9	ENSCGRG00001006253 ##7	ENSCGRG00001005821 #9	ENSCGRG00001007528 #9	ENSCGRG00001005639 #9	Ifne (ENSCGRG00001006683) ##7	ENSCGRG00001020377 #19	ENSCGRG00001019783	ENSCGRG00001016483	Cdkn2b (ENSCGRG00001014610) #20	Dmrta1 (ENSCGRG00001014289) #22	ENSCGRG00001013517	ENSCGRG00001012785	Elavl2 (ENSCGRG00001024409) #24	Izumo3 (ENSCGRG00001023060) #25	ENSCGRG00001019319	Tusc1 (ENSCGRG00001012163) #26	Caap1 (ENSCGRG00001016530) #28	ENSCGRG00001008077	Plaa (ENSCGRG00001024275) #29	Lrrc19 (ENSCGRG00001023151) #30	Ift74 (ENSCGRG00001020714) #31	Tek (ENSCGRG00001018441) #32	Eqtn (ENSCGRG00001001186) #34	Mysm1 (ENSCGRG00001015762)	Jun (ENSCGRG00001011810)
Golden Hamster	MODERN SPECIES	662	Adamtsl1 (ENSMAUG00000018361)	Saxo1 (ENSMAUG00000004358)	Rraga (ENSMAUG00000003702)	ENSMAUG00000020314	Dennd4c (ENSMAUG00000002052)	ENSMAUG00000016545	Acer2 (ENSMAUG00000020667)	Slc24a2 (ENSMAUG00000016398)	Mllt3 (ENSMAUG00000021318)	Focad (ENSMAUG00000012306)	Hacd4 (ENSMAUG00000000488)	ENSMAUG00000004733 #9	Mtap (ENSMAUG00000010309) #19	Cdkn2a (ENSMAUG00000003307)	Cdkn2b (ENSMAUG00000019635) #20	Dmrta1 (ENSMAUG00000004332) #22	Elavl2 (ENSMAUG00000011955) #24	Izumo3 (ENSMAUG00000014991) #25	Tusc1 (ENSMAUG00000020941) #26	ENSMAUG00000014308 #28	Plaa (ENSMAUG00000013719) #29	Ift74 (ENSMAUG00000001215) #31	ENSMAUG00000006577 #30	Tek (ENSMAUG00000018555) #32	Eqtn (ENSMAUG00000015891) #34	Mysm1 (ENSMAUG00000014841)	ENSMAUG00000014400	Jun (ENSMAUG00000007038)	Fggy (ENSMAUG00000019211)	Hook1 (ENSMAUG00000017707)	ENSMAUG00000008711
Murinae	ANCESTRAL SPECIES	2	ENSGT00390000009819.a.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b.p.a.a #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b.p.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.p.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00900000143271	ENSGT00940000159251
Mus	ANCESTRAL SPECIES	3	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000168083	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.a.b
Mus_A	ANCESTRAL SPECIES	3	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a #9	ENSGT00860000135766	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000168083	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.a.b
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.a #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.p.a.a.b.a.a #9	ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a #9	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b	ENSGT00860000135766	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000168083	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000164376.c	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b.p.a.b.a #9	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.b	ENSGT00860000135766	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000168083	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000164376.c	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251
Steppe mouse	MODERN SPECIES	3181										Ifna4 (ENSMSIG00000015985) #9	Ifna5 (ENSMSIG00000015987) #9	Ifne (ENSMSIG00000015993) ##7	Mtap (ENSMSIG00000016003) #19	Cdkn2a (ENSMSIG00000016031)	ENSMSIG00000016052 #20	Dmrta1 (ENSMSIG00000016072) #22	ENSMSIG00000016078	Zfp352 (ENSMSIG00000016079)	Elavl2 (ENSMSIG00000016130) #24
spretus	MODERN SPECIES	13	MGP_SPRETEiJ_G0027107 #9	Pramel32 (MGP_SPRETEiJ_G0027108)	MGP_SPRETEiJ_G0027109 #9	MGP_SPRETEiJ_G0027110 #9	MGP_SPRETEiJ_G0027111 #9	MGP_SPRETEiJ_G0027112 #9	Klhl9 (MGP_SPRETEiJ_G0027113) #13	MGP_SPRETEiJ_G0027114	MGP_SPRETEiJ_G0027115 #9	MGP_SPRETEiJ_G0027116 #9	MGP_SPRETEiJ_G0027117	Ifne (MGP_SPRETEiJ_G0027118) ##7	Mtap (MGP_SPRETEiJ_G0027119) #19	Cdkn2a (MGP_SPRETEiJ_G0027120)	Cdkn2b (MGP_SPRETEiJ_G0027121) #20	Dmrta1 (MGP_SPRETEiJ_G0027122) #22	Zfp352 (MGP_SPRETEiJ_G0027123)	Elavl2 (MGP_SPRETEiJ_G0027124) #24	Izumo3 (MGP_SPRETEiJ_G0027125) #25	Tusc1 (MGP_SPRETEiJ_G0027126) #26	Caap1 (MGP_SPRETEiJ_G0027127) #28	MGP_SPRETEiJ_G0027128	Plaa (MGP_SPRETEiJ_G0027129) #29	Ift74 (MGP_SPRETEiJ_G0027130) #31	Lrrc19 (MGP_SPRETEiJ_G0027131) #30	MGP_SPRETEiJ_G0027132	Tek (MGP_SPRETEiJ_G0027133) #32	Eqtn (MGP_SPRETEiJ_G0027134) #34	Mysm1 (MGP_SPRETEiJ_G0027135)	Jun (MGP_SPRETEiJ_G0027136)	Fggy (MGP_SPRETEiJ_G0027137)
Mouse	MODERN SPECIES	13	Gm13275 (ENSMUSG00000099518) ##7	Gm13279 (ENSMUSG00000099420) ##7	Gm13285 (ENSMUSG00000095101) ##7	Gm13287 (ENSMUSG00000094648) ##7	Gm13288 (ENSMUSG00000070908) ##7	Ifna7 (ENSMUSG00000100713) #9	Ifna11 (ENSMUSG00000100549) #9	Ifna6 (ENSMUSG00000101252) #9	Ifna5 (ENSMUSG00000096682) #9	Ifna4 (ENSMUSG00000070904) #9	Ifna1 (ENSMUSG00000095498) #9	Ifne (ENSMUSG00000045364) ##7	Mtap (ENSMUSG00000062937) #19	Cdkn2a (ENSMUSG00000044303)	Cdkn2b (ENSMUSG00000073802) #20	Dmrta1 (ENSMUSG00000043753) #22	Zfp352 (ENSMUSG00000070902)	Elavl2 (ENSMUSG00000008489) #24	Izumo3 (ENSMUSG00000028533) #25	Gm12666 (ENSMUSG00000066107)	Tusc1 (ENSMUSG00000054000) #26	Caap1 (ENSMUSG00000028578) #28	Plaa (ENSMUSG00000028577) #29	Ift74 (ENSMUSG00000028576) #31	Lrrc19 (ENSMUSG00000049799) #30	Tek (ENSMUSG00000006386) #32	Eqtn (ENSMUSG00000028575) #34	Mysm1 (ENSMUSG00000062627)	Jun (ENSMUSG00000052684)	Fggy (ENSMUSG00000028573)	Hook1 (ENSMUSG00000028572)
Ryukyu mouse	MODERN SPECIES	13	MGP_CAROLIEiJ_G0026143 #9	MGP_CAROLIEiJ_G0026144 #9	Pramel32 (MGP_CAROLIEiJ_G0026145)	MGP_CAROLIEiJ_G0026146 #9	MGP_CAROLIEiJ_G0026147 #9	MGP_CAROLIEiJ_G0026148 #9	MGP_CAROLIEiJ_G0026149 #9	Klhl9 (MGP_CAROLIEiJ_G0026150) #13	MGP_CAROLIEiJ_G0026151	MGP_CAROLIEiJ_G0026152 #9	MGP_CAROLIEiJ_G0026153	Ifne (MGP_CAROLIEiJ_G0026154) ##7	Mtap (MGP_CAROLIEiJ_G0026155) #19	Cdkn2a (MGP_CAROLIEiJ_G0026156)	Cdkn2b (MGP_CAROLIEiJ_G0026157) #20	Dmrta1 (MGP_CAROLIEiJ_G0026158) #22	Elavl2 (MGP_CAROLIEiJ_G0026159) #24	Izumo3 (MGP_CAROLIEiJ_G0026160) #25	Tusc1 (MGP_CAROLIEiJ_G0026161) #26	Caap1 (MGP_CAROLIEiJ_G0026162) #28	MGP_CAROLIEiJ_G0026163	Plaa (MGP_CAROLIEiJ_G0026164) #29	MGP_CAROLIEiJ_G0026165 #31	Lrrc19 (MGP_CAROLIEiJ_G0026166) #30	Tek (MGP_CAROLIEiJ_G0026167) #32	Eqtn (MGP_CAROLIEiJ_G0026168) #34	Mysm1 (MGP_CAROLIEiJ_G0026169)	Jun (MGP_CAROLIEiJ_G0026170)	Fggy (MGP_CAROLIEiJ_G0026171)	Hook1 (MGP_CAROLIEiJ_G0026172)	Cyp2j13 (MGP_CAROLIEiJ_G0026173)
Shrew mouse	MODERN SPECIES	19	MGP_PahariEiJ_G0028480 #9	MGP_PahariEiJ_G0028481 #9	MGP_PahariEiJ_G0028482 #9	MGP_PahariEiJ_G0028484 #9	MGP_PahariEiJ_G0028483 #9	Klhl9 (MGP_PahariEiJ_G0028485) #13	MGP_PahariEiJ_G0028486	MGP_PahariEiJ_G0028487 #9	MGP_PahariEiJ_G0028489 #9	MGP_PahariEiJ_G0028488 #9	MGP_PahariEiJ_G0028490	Ifne (MGP_PahariEiJ_G0028491) ##7	Mtap (MGP_PahariEiJ_G0028492) #19	Cdkn2a (MGP_PahariEiJ_G0028493)	Cdkn2b (MGP_PahariEiJ_G0028494) #20	Dmrta1 (MGP_PahariEiJ_G0028495) #22	Elavl2 (MGP_PahariEiJ_G0028496) #24	Izumo3 (MGP_PahariEiJ_G0028497) #25	Tusc1 (MGP_PahariEiJ_G0028498) #26	Caap1 (MGP_PahariEiJ_G0028499) #28	MGP_PahariEiJ_G0028500	Plaa (MGP_PahariEiJ_G0028501) #29	Ift74 (MGP_PahariEiJ_G0028502) #31	Lrrc19 (MGP_PahariEiJ_G0028503) #30	Tek (MGP_PahariEiJ_G0028504) #32	MGP_PahariEiJ_G0028505 #34	Mysm1 (MGP_PahariEiJ_G0028506)	Jun (MGP_PahariEiJ_G0028507)	Fggy (MGP_PahariEiJ_G0028508)	Hook1 (MGP_PahariEiJ_G0028509)	Cyp2j13 (MGP_PahariEiJ_G0028510)
Rat	MODERN SPECIES	15	LOC120103158 (ENSRNOG00000064351) #9	LOC120103159 (ENSRNOG00000069770) #9	LOC120103160 (ENSRNOG00000063583) #9	LOC120103161 (ENSRNOG00000063625) #9	LOC120103162 (ENSRNOG00000065583) #9	RGD1560539 (ENSRNOG00000066962) #9	LOC120103163 (ENSRNOG00000066857) #9	LOC120103164 (ENSRNOG00000070321) #9	LOC100911527 (ENSRNOG00000065328) #9	Ifne (ENSRNOG00000024204) ##7	LOC100362345 (ENSRNOG00000024197)	Mtap (ENSRNOG00000006615) #19	ENSRNOG00000070364	Cdkn2a (ENSRNOG00000059837)	Cdkn2b (ENSRNOG00000006735) #20	Dmrta1 (ENSRNOG00000024093) #22	Zfp352 (ENSRNOG00000033600)	Zfp353 (ENSRNOG00000050804)	Elavl2 (ENSRNOG00000006853) #24	Izumo3 (ENSRNOG00000022488) #25	AABR07049223.1 (ENSRNOG00000032516)	AABR07049228.1 (ENSRNOG00000056007)	Tusc1 (ENSRNOG00000066328) #26	Caap1 (ENSRNOG00000007299) #28	Plaa (ENSRNOG00000007753) #29	Ift74 (ENSRNOG00000008075) #31	Lrrc19 (ENSRNOG00000022225) #30	Tek (ENSRNOG00000008587) #32	Eqtn (ENSRNOG00000026323) #34	Mysm1 (ENSRNOG00000026299)	Jun (ENSRNOG00000026293)
Upper Galilee mountains blind mole rat	MODERN SPECIES	628												Klhl9 (ENSNGAG00000012889) #13	ENSNGAG00000015985 #19	ENSNGAG00000022636	Cdkn2b (ENSNGAG00000012585) #20	Dmrta1 (ENSNGAG00000023922) #22	ENSNGAG00000021866	Elavl2 (ENSNGAG00000014535) #24	ENSNGAG00000022004	Izumo3 (ENSNGAG00000013642) #25	Tusc1 (ENSNGAG00000001051) #26	Caap1 (ENSNGAG00000022127) #28	ENSNGAG00000021141	Plaa (ENSNGAG00000022466) #29	Ift74 (ENSNGAG00000005078) #31	Lrrc19 (ENSNGAG00000004826) #30	Tek (ENSNGAG00000019538) #32	Eqtn (ENSNGAG00000023403) #34	Mob3b (ENSNGAG00000023396) #36	C9orf72 (ENSNGAG00000023767) #37
Lesser Egyptian jerboa	MODERN SPECIES	66	Dennd4c (ENSJJAG00000022774)	ENSJJAG00000011871	Acer2 (ENSJJAG00000020889)	Slc24a2 (ENSJJAG00000020852)	ENSJJAG00000018542	Mllt3 (ENSJJAG00000012196)	Focad (ENSJJAG00000024309)	Hacd4 (ENSJJAG00000024303)	ENSJJAG00000024178	Klhl9 (ENSJJAG00000007691) #13	ENSJJAG00000010173 #19	ENSJJAG00000017320	Cdkn2b (ENSJJAG00000021247) #20	ENSJJAG00000009128	ENSJJAG00000009725	Dmrta1 (ENSJJAG00000015837) #22	ENSJJAG00000021773	Elavl2 (ENSJJAG00000008247) #24	Izumo3 (ENSJJAG00000017341) #25	ENSJJAG00000011332	ENSJJAG00000019508	Caap1 (ENSJJAG00000012208) #28	Plaa (ENSJJAG00000013453) #29	Lrrc19 (ENSJJAG00000022557) #30	Ift74 (ENSJJAG00000017963) #31	Tek (ENSJJAG00000019197) #32	ENSJJAG00000020051	Mob3b (ENSJJAG00000000886) #36	C9orf72 (ENSJJAG00000008608) #37	Lingo2 (ENSJJAG00000010453)	ENSJJAG00000022023
Kangaroo rat	MODERN SPECIES	372	Saxo1 (ENSDORG00000026559)	Haus6 (ENSDORG00000026577)	ENSDORG00000014197	Dennd4c (ENSDORG00000012055)	ENSDORG00000012057	Acer2 (ENSDORG00000002403)	Slc24a2 (ENSDORG00000015412)	ENSDORG00000027266	ENSDORG00000028514	Focad (ENSDORG00000006921)	Hacd4 (ENSDORG00000006925)	Klhl9 (ENSDORG00000028408) #13	Mtap (ENSDORG00000012074) #19	ENSDORG00000012075	Cdkn2b (ENSDORG00000012076) #20	Dmrta1 (ENSDORG00000015411) #22	Elavl2 (ENSDORG00000010437) #24	Izumo3 (ENSDORG00000027519) #25	ENSDORG00000005292	Tusc1 (ENSDORG00000029686) #26	Caap1 (ENSDORG00000025530) #28	Plaa (ENSDORG00000002789) #29	Ift74 (ENSDORG00000008963) #31	Lrrc19 (ENSDORG00000008965) #30	Tek (ENSDORG00000010652) #32	ENSDORG00000010654 #34	Mob3b (ENSDORG00000010444) #36	C9orf72 (ENSDORG00000006734) #37	Lingo2 (ENSDORG00000029438)
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.b	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00390000009819.a.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT00940000167452	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Hystricomorpha	ANCESTRAL SPECIES	7										ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT01100000266946	ENSGT00940000157772	ENSGT00940000153173.a
Hystricomorpha_a	ANCESTRAL SPECIES	5										ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017010 #28	ENSGT00860000136187	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a	ENSGT00530000064170.e
Hystricomorpha_b	ANCESTRAL SPECIES	11												ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a	ENSGT00530000064170.e	ENSGT01020000230598	ENSGT00390000007535
Long-tailed chinchilla	MODERN SPECIES	179													MTAP (ENSCLAG00000001731) #19	CDKN2A (ENSCLAG00000001664)	CDKN2B (ENSCLAG00000004253) #20	ENSCLAG00000004081 #22	ELAVL2 (ENSCLAG00000003388) #24	CAAP1 (ENSCLAG00000002895) #28	PLAA (ENSCLAG00000002600) #29	LRRC19 (ENSCLAG00000002476) #30	IFT74 (ENSCLAG00000002217) #31	TEK (ENSCLAG00000002200) #32	ENSCLAG00000001999 #34	ENSCLAG00000001968 #34	MOB3B (ENSCLAG00000001885) #36	C9orf72 (ENSCLAG00000001862) #37	LINGO2 (ENSCLAG00000017459)	ENSCLAG00000001658	ENSCLAG00000002806	ACO1 (ENSCLAG00000002487)	RIGI (ENSCLAG00000002351)
Degu	MODERN SPECIES	140										ENSODEG00000004090 #9	ENSODEG00000004039 #9	ENSODEG00000003787 #19	ENSODEG00000003701	CDKN2B (ENSODEG00000003617) #20	ENSODEG00000003574	DMRTA1 (ENSODEG00000003392) #22	ELAVL2 (ENSODEG00000002531) #24	ENSODEG00000002352	ENSODEG00000002277	ENSODEG00000018769	CAAP1 (ENSODEG00000002253) #28	PLAA (ENSODEG00000003249) #29	LRRC19 (ENSODEG00000003217) #30	IFT74 (ENSODEG00000003146) #31	TEK (ENSODEG00000002511) #32	MOB3B (ENSODEG00000002400) #36	C9orf72 (ENSODEG00000002381) #37	LINGO2 (ENSODEG00000018786)	ENSODEG00000018803	ENSODEG00000002236
Guinea pig	MODERN SPECIES	2		ENSCPOG00000036367 #9	ENSCPOG00000031809 #9	ENSCPOG00000037617 #9	ENSCPOG00000040424 #9	ENSCPOG00000021662 #9	ENSCPOG00000039788 #9	ENSCPOG00000036041 #9	ENSCPOG00000027262 #9	ENSCPOG00000010467 #8	ENSCPOG00000033588 #9	ENSCPOG00000010375 #8	ENSCPOG00000000825 #19	CDKN2A (ENSCPOG00000023988)	CDKN2B (ENSCPOG00000001268) #20	DMRTA1 (ENSCPOG00000036480) #22	ELAVL2 (ENSCPOG00000010472) #24	CAAP1 (ENSCPOG00000037143) #28	ENSCPOG00000032640	PLAA (ENSCPOG00000012969) #29	IFT74 (ENSCPOG00000012980) #31	LRRC19 (ENSCPOG00000012981) #30	TEK (ENSCPOG00000009907) #32	MOB3B (ENSCPOG00000009470) #36	ENSCPOG00000000866 #35	C9orf72 (ENSCPOG00000009473) #37	LINGO2 (ENSCPOG00000008899)	ENSCPOG00000040788	ENSCPOG00000033096	H2BC18 (ENSCPOG00000030049)	ENSCPOG00000037353
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000044890	ENSHGLG00000006210	ENSHGLG00000037708	ENSHGLG00000004959	ENSHGLG00000011793	ENSHGLG00000005602	ENSHGLG00000000210	ENSHGLG00000035491	ENSHGLG00000041847	ENSHGLG00000006616 #19	ENSHGLG00000020314	ENSHGLG00000008650	ENSHGLG00000034314	CDKN2B (ENSHGLG00000038311) #20	ENSHGLG00000040016	DMRTA1 (ENSHGLG00000051021) #22	ELAVL2 (ENSHGLG00000005423) #24	ENSHGLG00000047261	ENSHGLG00000001616	ENSHGLG00000020416	TUSC1 (ENSHGLG00000039095) #26	ENSHGLG00000036016	ENSHGLG00000034551 #28	PLAA (ENSHGLG00000010977) #29	LRRC19 (ENSHGLG00000040675) #30	ENSHGLG00000032796	IFT74 (ENSHGLG00000007564) #31	ENSHGLG00000037234	TEK (ENSHGLG00000017418) #32	MOB3B (ENSHGLG00000005405) #36	ENSHGLG00000020201 #35
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00950000182920.b.a.b.a.b	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078.g	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Marmotini	ANCESTRAL SPECIES	1	ENSGT01000000214430.a.b.e #7	ENSGT01000000214430.a.a.a.a.a.b.m.a #9	ENSGT01000000214430.a.b.f.a.b #7	ENSGT01000000214430.a.a.a.a.a.b.n.b.b #9	ENSGT01000000214430.a.a.a.a.a.b.n.a.a #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.m.b #9	ENSGT01000000214430.a.a.a.a.a.b.n.b.a.a #9	ENSGT01000000214430.a.b.f.a.a #7	ENSGT01000000214430.a.a.a.a.a.b.n.b.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078.g	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00960000189870	ENSGT00940000157772
Marmotini_b	ANCESTRAL SPECIES	2											ENSGT01000000214430.a.a.a.a.a.b.n.b.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00960000189870	ENSGT00940000157772
Squirrel	MODERN SPECIES	252	ENSSTOG00000024906	ACER2 (ENSSTOG00000022847)	SLC24A2 (ENSSTOG00000028358)	MLLT3 (ENSSTOG00000027195)	FOCAD (ENSSTOG00000015742)	HACD4 (ENSSTOG00000015776)	ENSSTOG00000021945 #7	ENSSTOG00000033477 #9	ENSSTOG00000027803 #7	ENSSTOG00000033711 #9	ENSSTOG00000021564 #7	ENSSTOG00000019950 #7	IFNE (ENSSTOG00000024739) ##7	MTAP (ENSSTOG00000014404) #19	CDKN2B (ENSSTOG00000008721) #20	DMRTA1 (ENSSTOG00000022459) #22
Arctic ground squirrel	MODERN SPECIES	198										ENSUPAG00010017776 #9	ENSUPAG00010017790 #9	IFNE (ENSUPAG00010017802) ##7	MTAP (ENSUPAG00010017804) #19	ENSUPAG00010017810	CDKN2B (ENSUPAG00010017817) #20	DMRTA1 (ENSUPAG00010017830) #22	ELAVL2 (ENSUPAG00010017838) #24	IZUMO3 (ENSUPAG00010017958) #25
Alpin marmot	MODERN SPECIES	30										ENSMMMG00000009657 #9	IFNE (ENSMMMG00000009652) ##7	ENSMMMG00000009642	MTAP (ENSMMMG00000009628) #19	ENSMMMG00000009612	ENSMMMG00000009596	DMRTA1 (ENSMMMG00000009543) #22	ENSMMMG00000009529	ELAVL2 (ENSMMMG00000009415) #24	IZUMO3 (ENSMMMG00000009377) #25	ENSMMMG00000009342	CAAP1 (ENSMMMG00000009307) #28	PLAA (ENSMMMG00000009283) #29	LRRC19 (ENSMMMG00000009258) #30	IFT74 (ENSMMMG00000009198) #31	TEK (ENSMMMG00000009044) #32	EQTN (ENSMMMG00000009014) #34	MOB3B (ENSMMMG00000009010) #36	C9orf72 (ENSMMMG00000008985) #37	ENSMMMG00000008980	LINGO2 (ENSMMMG00000008968)	ENSMMMG00000008959
Eurasian red squirrel	MODERN SPECIES	6	ENSSVLG00005023116 #9	ENSSVLG00005023171 #7	ENSSVLG00005023180 #9	ENSSVLG00005023193 #9	ENSSVLG00005023217 #7	ENSSVLG00005023225 #9	ENSSVLG00005023234 #9	ENSSVLG00005023243 #7	ENSSVLG00005023253 #9	ENSSVLG00005023273 #9	ENSSVLG00005023283 #9	ENSSVLG00005023288 ##7	ENSSVLG00005023302 #19	CDKN2A (ENSSVLG00005023359)	CDKN2B (ENSSVLG00005023398) #20	DMRTA1 (ENSSVLG00005023462) #22	ELAVL2 (ENSSVLG00005023496) #24	IZUMO3 (ENSSVLG00005023611) #25	TUSC1 (ENSSVLG00005023687) #26	ENSSVLG00005023697	ENSSVLG00005023705	ENSSVLG00005023720	PLAA (ENSSVLG00005023742) #29	IFT74 (ENSSVLG00005023765) #31	LRRC19 (ENSSVLG00005023797) #30	TEK (ENSSVLG00005023870) #32	ENSSVLG00005024155	ENSSVLG00005024176	MOB3B (ENSSVLG00005024202) #36	IFNK (ENSSVLG00005024213) #35	C9orf72 (ENSSVLG00005024231) #37
Lagomorpha	ANCESTRAL SPECIES	23													ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Rabbit	MODERN SPECIES		KLHL9 (ENSOCUG00000008548) #13	ENSOCUG00000027561 #9	ENSOCUG00000021714 #8	ENSOCUG00000028068 #8	ENSOCUG00000036321 #8	ENSOCUG00000015666 #9	ENSOCUG00000021343 #8	IFNE (ENSOCUG00000015672) ##7	ENSOCUG00000038006	ENSOCUG00000030275	ENSOCUG00000031845	ENSOCUG00000012289 #19	ENSOCUG00000027972	CDKN2B (ENSOCUG00000012306) #20	ENSOCUG00000021134	DMRTA1 (ENSOCUG00000006069) #22	ELAVL2 (ENSOCUG00000005891) #24	ENSOCUG00000030421	IZUMO3 (ENSOCUG00000022724) #25	TUSC1 (ENSOCUG00000017580) #26	ENSOCUG00000015387	ENSOCUG00000027058	ENSOCUG00000033820	ENSOCUG00000003706	ENSOCUG00000023508	CAAP1 (ENSOCUG00000015461) #28	PLAA (ENSOCUG00000015471) #29	LRRC19 (ENSOCUG00000029228) #30	IFT74 (ENSOCUG00000001320) #31	TEK (ENSOCUG00000017666) #32	ENSOCUG00000036968
Pika	MODERN SPECIES	9366																DMRTA1 (ENSOPRG00000013060) #22
Tree shrew	MODERN SPECIES	7203																DMRTA1 (ENSTBEG00000015360) #22
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000167452	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT01100000266946	ENSGT00940000157772
Suina	ANCESTRAL SPECIES	30												ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00950000184123	ENSGT00950000183043.a.b.b.a.a.a.a.b	ENSGT00940000156540	ENSGT00940000159098	ENSGT00730000111179.b	ENSGT01030000234620.a.b.a
Pig	MODERN SPECIES		IFN-DELTA-6 (ENSSSCG00000060359) ##7	IFN-OMEGA-3 (ENSSSCG00000057864) #8	IFN-ALPHA-17 (ENSSSCG00000054285) #9	IFN-OMEGA-7 (ENSSSCG00000056734) #8	ENSSSCG00000043817	IFN-ALPHA-1 (ENSSSCG00000057273) #9	IFN-DELTA-8 (ENSSSCG00000062062) ##7	IFN-ALPHA-10 (ENSSSCG00000063314) #9	ENSSSCG00000058490 #9	ENSSSCG00000047263	ENSSSCG00000031529 #8	IFNE (ENSSSCG00000005136) ##7	MTAP (ENSSSCG00000005135) #19	CDKN2A (ENSSSCG00000005134)	CDKN2B (ENSSSCG00000034120) #20	DMRTA1 (ENSSSCG00000005131) #22	ENSSSCG00000052428	ELAVL2 (ENSSSCG00000005130) #24	IZUMO3 (ENSSSCG00000005129) #25	TUSC1 (ENSSSCG00000005128) #26	CAAP1 (ENSSSCG00000053029) #28	PLAA (ENSSSCG00000005126) #29	ENSSSCG00000045059	LRRC19 (ENSSSCG00000005125) #30	IFT74 (ENSSSCG00000005124) #31	TEK (ENSSSCG00000005122) #32	ENSSSCG00000057365	ENSSSCG00000056640	ENSSSCG00000005121	ENSSSCG00000044869	ENSSSCG00000060741
Chacoan peccary	MODERN SPECIES	784	ENSCWAG00000013149 ##7	KLHL9 (ENSCWAG00000013179) #13	ENSCWAG00000013195 #9	ENSCWAG00000013210 ##7	ENSCWAG00000013224 #9	ENSCWAG00000013290	ENSCWAG00000013303 #8	ENSCWAG00000013324 #9	ENSCWAG00000013350 #8	ENSCWAG00000013402 ##7	ENSCWAG00000013446 #8	IFNE (ENSCWAG00000013463) ##7	MTAP (ENSCWAG00000013498) #19	CDKN2A (ENSCWAG00000013543)	CDKN2B (ENSCWAG00000013670) #20	DMRTA1 (ENSCWAG00000013683) #22	ELAVL2 (ENSCWAG00000013733) #24	ENSCWAG00000013912	IZUMO3 (ENSCWAG00000013956) #25	TUSC1 (ENSCWAG00000014088) #26	CAAP1 (ENSCWAG00000014114) #28	PLAA (ENSCWAG00000014162) #29	IFT74 (ENSCWAG00000014238) #31	LRRC19 (ENSCWAG00000014294) #30	TEK (ENSCWAG00000014388) #32	ENSCWAG00000015034	ENSCWAG00000015083	KCNH5 (ENSCWAG00000015153)	RHOJ (ENSCWAG00000015319)	GPHB5 (ENSCWAG00000015356)	PPP2R5E (ENSCWAG00000015392)
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00950000185419	ENSGT00940000157772
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000155903	ENSGT01000000221453	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a.b.n #8	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b.y #9	ENSGT01000000214430.a.a.a.a.a.b.z #9	ENSGT01000000214430.a.a.a.a.a.a.b.m #8	ENSGT01000000214430.a.a.b ##7	ENSGT00940000163158.b.b.a.b	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00950000185419	ENSGT00940000154788.ib.b.b
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00940000155903	ENSGT01000000221453	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a.b.m.b #8	ENSGT01000000214430.a.a.a.a.a.b.y #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b.z #9	ENSGT01000000214430.a.a.a.a.a.a.b.m.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00940000163158.b.b.a.b	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00950000185419	ENSGT00940000154788.ib.b.b.a
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00940000155903	ENSGT01000000221453	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a.b.m.b.a.a #8	ENSGT01000000214430.a.a.a.a.a.a.b.m.b.b #8	ENSGT01000000214430.a.a.a.a.a.b.y #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b.m.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00940000163158.b.b.a.b	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00950000185419	ENSGT00940000154788.ib.b.b.a
Dolphin	MODERN SPECIES	3860																DMRTA1 (ENSTTRG00000015206) #22
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT01000000221453	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a.b.m.b.a.a #8	ENSGT01000000214430.a.a.a.a.a.a.b.m.b.b #8	ENSGT01000000214430.a.a.a.a.a.b.y #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b.m.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00940000163158.b.b.a.b	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00390000007370.j	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00950000184123	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00950000185419
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000155903	ENSGT01000000221453	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a.b.m.b.a.a #8	ENSGT01000000214430.a.a.a.a.b.k.a ##7	ENSGT01000000214430.a.a.a.a.a.b.y #9	ENSGT01000000214430.a.a.a.a.a.a.b.m.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00940000163158.b.b.a.b	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00390000007370.j	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000154788.ib.b.b.a	ENSGT00940000157772
Beluga whale	MODERN SPECIES	50	FOCAD (ENSDLEG00000020454)	HACD4 (ENSDLEG00000020669)	IFNB1 (ENSDLEG00000020677) #7	ENSDLEG00000020680 #8	ENSDLEG00000020689 #9	ENSDLEG00000020694 #9	ENSDLEG00000020697 ##7	ENSDLEG00000020704 #9	ENSDLEG00000020708 ##7	ENSDLEG00000020711 #8	IFNE (ENSDLEG00000020712) ##7	ENSDLEG00000020715	MTAP (ENSDLEG00000020720) #19	CDKN2A (ENSDLEG00000020727)	ENSDLEG00000020728	DMRTA1 (ENSDLEG00000020730) #22	ENSDLEG00000020732	ELAVL2 (ENSDLEG00000020736) #24	IZUMO3 (ENSDLEG00000020742) #25	ENSDLEG00000020744	TUSC1 (ENSDLEG00000020748) #26	ENSDLEG00000020753	CAAP1 (ENSDLEG00000020758) #28	PLAA (ENSDLEG00000020764) #29	IFT74 (ENSDLEG00000020767) #31	LRRC19 (ENSDLEG00000020775) #30	TEK (ENSDLEG00000020783) #32	MOB3B (ENSDLEG00000020809) #36	IFNK (ENSDLEG00000020813) #35	CUNH9orf72 (ENSDLEG00000020817) #37	LINGO2 (ENSDLEG00000020824)
Narwhal	MODERN SPECIES	312	IFNB1 (ENSMMNG00015016208) #7	ENSMMNG00015016113 #8	ENSMMNG00015016081 #9	ENSMMNG00015016051 #8	ENSMMNG00015016023 ##7	ENSMMNG00015015997 #9	ENSMMNG00015015976 ##7	ENSMMNG00015015959 #9	ENSMMNG00015015943 #8	IFNE (ENSMMNG00015015924) ##7	ENSMMNG00015015900	MTAP (ENSMMNG00015015858) #19	CDKN2A (ENSMMNG00015015826)	CDKN2B (ENSMMNG00015015802) #20	ENSMMNG00015015785	DMRTA1 (ENSMMNG00015015759) #22	ENSMMNG00015020828	ELAVL2 (ENSMMNG00015020789) #24	IZUMO3 (ENSMMNG00015020736) #25	ENSMMNG00015020712	TUSC1 (ENSMMNG00015020705) #26	CAAP1 (ENSMMNG00015020689) #28	PLAA (ENSMMNG00015020666) #29	LRRC19 (ENSMMNG00015020655) #30	IFT74 (ENSMMNG00015020629) #31	TEK (ENSMMNG00015020478) #32	EQTN (ENSMMNG00015020384) #34	IFNK (ENSMMNG00015020369) #35	MOB3B (ENSMMNG00015020353) #36	C9orf72 (ENSMMNG00015020313) #37	LINGO2 (ENSMMNG00015020298)
Vaquita	MODERN SPECIES	17	ENSPSNG00000001095	IFNB1 (ENSPSNG00000001113) #7	ENSPSNG00000001121 #9	ENSPSNG00000001130 ##7	ENSPSNG00000001145 #8	ENSPSNG00000001161 #8	ENSPSNG00000001176 #9	ENSPSNG00000001196 #9	ENSPSNG00000001205 #8	IFNE (ENSPSNG00000001235) ##7	ENSPSNG00000001246	MTAP (ENSPSNG00000001269) #19	CDKN2A (ENSPSNG00000001297)	CDKN2B (ENSPSNG00000001319) #20	ENSPSNG00000001333	DMRTA1 (ENSPSNG00000001426) #22	ENSPSNG00000001438	ELAVL2 (ENSPSNG00000001471) #24	IZUMO3 (ENSPSNG00000001537) #25	ENSPSNG00000001579	TUSC1 (ENSPSNG00000001586) #26	CAAP1 (ENSPSNG00000001609) #28	PLAA (ENSPSNG00000001649) #29	IFT74 (ENSPSNG00000001698) #31	LRRC19 (ENSPSNG00000001725) #30	TEK (ENSPSNG00000001842) #32	ENSPSNG00000001974	MOB3B (ENSPSNG00000001987) #36	IFNK (ENSPSNG00000002003) #35	C9orf72 (ENSPSNG00000002018) #37	LINGO2 (ENSPSNG00000002038)
Sperm whale	MODERN SPECIES	20	ENSPCTG00005015884	FOCAD (ENSPCTG00005015965)	HACD4 (ENSPCTG00005016218)	IFNB1 (ENSPCTG00005016262) #7	ENSPCTG00005016273 #8	ENSPCTG00005016288 #9	ENSPCTG00005016338 #9	ENSPCTG00005016427 #9	ENSPCTG00005016562 #9	ENSPCTG00005016584 #8	IFNE (ENSPCTG00005016639) ##7	ENSPCTG00005016658	MTAP (ENSPCTG00005016695) #19	CDKN2A (ENSPCTG00005016737)	CDKN2B (ENSPCTG00005016790) #20	DMRTA1 (ENSPCTG00005016828) #22	ELAVL2 (ENSPCTG00005016896) #24	IZUMO3 (ENSPCTG00005017059) #25	TUSC1 (ENSPCTG00005017226) #26	CAAP1 (ENSPCTG00005017264) #28	PLAA (ENSPCTG00005017333) #29	IFT74 (ENSPCTG00005017400) #31	LRRC19 (ENSPCTG00005017494) #30	TEK (ENSPCTG00005017578) #32	ENSPCTG00005018255	MOB3B (ENSPCTG00005018315) #36	IFNK (ENSPCTG00005018354) #35	C9orf72 (ENSPCTG00005018375) #37	LINGO2 (ENSPCTG00005018442)	ENSPCTG00005018459	ENSPCTG00005000498
Blue whale	MODERN SPECIES	17	ENSBMSG00010000172 ##7	ENSBMSG00010000162 #9	ENSBMSG00010000146 ##7	ENSBMSG00010000120 #8	ENSBMSG00010000101 #9	ENSBMSG00010002714 #8	ENSBMSG00010002708 #9	ENSBMSG00010002688	ENSBMSG00010002680 #9	ENSBMSG00010002675 #9	ENSBMSG00010002667 #8	IFNE (ENSBMSG00010002658) ##7	ENSBMSG00010002649	MTAP (ENSBMSG00010002632) #19	CDKN2A (ENSBMSG00010002601)	DMRTA1 (ENSBMSG00010002547) #22	ENSBMSG00010002538	ELAVL2 (ENSBMSG00010002512) #24	ENSBMSG00010002482	IZUMO3 (ENSBMSG00010002457) #25	TUSC1 (ENSBMSG00010002418) #26	CAAP1 (ENSBMSG00010002383) #28	PLAA (ENSBMSG00010002358) #29	LRRC19 (ENSBMSG00010002326) #30	IFT74 (ENSBMSG00010002307) #31	TEK (ENSBMSG00010002226) #32	ENSBMSG00010002164	MOB3B (ENSBMSG00010002146) #36	IFNK (ENSBMSG00010002135) #35	C9orf72 (ENSBMSG00010002120) #37	LINGO2 (ENSBMSG00010002102)
Pecora	ANCESTRAL SPECIES	30	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.a #8	ENSGT01000000214430.a.a.a.a.b.h ##7	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.b #8	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00950000185419
Percora_a	ANCESTRAL SPECIES	24	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b.b ##7	ENSGT01100000263642	ENSGT01000000214430.a.a.a.b.a ##7	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.a #8	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.b.h ##7	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.b #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT01100000266201	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665
Bovidae	ANCESTRAL SPECIES	14	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT00990000211532	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b.b ##7	ENSGT01100000263642	ENSGT01000000214430.a.a.a.b.a ##7	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.a #8	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT00940000165099	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT01100000266201	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665
Bovinae	ANCESTRAL SPECIES	39	ENSGT01000000214430.a.a.a.a.a.a.b.l.a.b #8	ENSGT01000000214430.a.a.a.a.b.g.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.b.b #8	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.a #9	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.a #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b #8	ENSGT01000000214430.a.a.a.a.a.b.ab #9	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.b #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.b #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00950000185419	ENSGT00940000158555.i.b
Bos	ANCESTRAL SPECIES	10	ENSGT01000000214430.a.a.a.a.b.g.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.b.b #8	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.a #9	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b #8	ENSGT01000000214430.a.a.a.a.a.b.ab #9	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.b #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.b #8	ENSGT00950000182991.B.z #19	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.y #19	ENSGT00940000165099	ENSGT00390000007552.f	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00550000074873.bb.b	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00950000185419
Bos_a	ANCESTRAL SPECIES	50							ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.a #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.y #19	ENSGT00940000162423 #20	ENSGT00940000154902.bb.a	ENSGT00940000154902.bb.b	ENSGT00390000007552.f	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00550000074873.bb.b	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00950000185419
Wild yak	MODERN SPECIES	114													IFNE (ENSBMUG00000011687) ##7	MTAP (ENSBMUG00000011674) #19	ENSBMUG00000011637	DMRTA1 (ENSBMUG00000011546) #22
Domestic yak	MODERN SPECIES	26	ENSBGRG00000002413 #9	KLHL9 (ENSBGRG00000002421) #13	ENSBGRG00000002434 #9	ENSBGRG00000002439 #8	ENSBGRG00000002442 #8	ENSBGRG00000002447 #8	ENSBGRG00000002456 #9	ENSBGRG00000002462 #8	ENSBGRG00000002472 #8	ENSBGRG00000002476 #8	ENSBGRG00000002505 #8	IFNE (ENSBGRG00000002520) ##7	ENSBGRG00000002533 #19	ENSBGRG00000002560 #20	ENSBGRG00000002626	DMRTA1 (ENSBGRG00000002642) #22	ELAVL2 (ENSBGRG00000002663) #24	IZUMO3 (ENSBGRG00000002804) #25	TUSC1 (ENSBGRG00000002852) #26	ENSBGRG00000000412	CAAP1 (ENSBGRG00000000429) #28	PLAA (ENSBGRG00000000455) #29	IFT74 (ENSBGRG00000000512) #31	LRRC19 (ENSBGRG00000000556) #30	TEK (ENSBGRG00000000666) #32	ENSBGRG00000001020	MOB3B (ENSBGRG00000001067) #36	ENSBGRG00000001104	C9orf72 (ENSBGRG00000001111) #37	ENSBGRG00000001152	LINGO2 (ENSBGRG00000001159)
Bos_b	ANCESTRAL SPECIES	3	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.`b.b.a.a.a #9	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.a.a.a.b.b #8	ENSGT01000000214430.a.a.a.a.a.b.`b.a.a.a #9	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b #8	ENSGT01000000214430.a.a.a.a.a.b.ab #9	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.b #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.b #8	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.z #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00390000007552.f	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT01100000263474.a.b.b.f.g.a.a.a	ENSGT00550000074873.bb.b	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00950000184123	ENSGT01000000214430.b #35	ENSGT01050000244898.a.a.a.b #36	ENSGT00390000005644 #37	ENSGT00940000156665
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005005565 #9	ENSBIXG00005025521 #8	ENSBIXG00005025546 #9	ENSBIXG00005025571 #8	ENSBIXG00005025592 #8	ENSBIXG00005025621 #8	ENSBIXG00005025672 #8	ENSBIXG00005025679 #9	ENSBIXG00005025752 #8	ENSBIXG00005007739 #8	ENSBIXG00005025926 #8	MTAP (ENSBIXG00005004427) #19	CDKN2A (ENSBIXG00005026038)	CDKN2B (ENSBIXG00005004453) #20	ENSBIXG00005007636	DMRTA1 (ENSBIXG00005026148) #22	ELAVL2 (ENSBIXG00005026326) #24	IZUMO3 (ENSBIXG00005026432) #25	TUSC1 (ENSBIXG00005004523) #26	ENSBIXG00005026478	ENSBIXG00005004531	CAAP1 (ENSBIXG00005026525) #28	ENSBIXG00005026532	PLAA (ENSBIXG00005026552) #29	LRRC19 (ENSBIXG00005026561) #30	IFT74 (ENSBIXG00005004546) #31	TEK (ENSBIXG00005026764) #32	ENSBIXG00005002481	IFNK (ENSBIXG00005004601) #35	C9orf72 (ENSBIXG00005026955) #37	LINGO2 (ENSBIXG00005026982)
Cow	MODERN SPECIES	27	IFNAG (ENSBTAG00000046443) #9	KLHL9 (ENSBTAG00000012375) #13	ENSBTAG00000055152 #9	ENSBTAG00000054099 #8	IFN-TAU (ENSBTAG00000047698) #8	ENSBTAG00000048891 #9	ENSBTAG00000054206 #8	ENSBTAG00000025928 #9	IFN-tau-c1 (ENSBTAG00000053469) #8	IFNT2 (ENSBTAG00000053027) #8	IFNT3 (ENSBTAG00000050661) #8	IFNE (ENSBTAG00000039069) ##7	ENSBTAG00000025929 #19	CDKN2A (ENSBTAG00000034220)	CDKN2B (ENSBTAG00000051567) #20	DMRTA1 (ENSBTAG00000001315) #22	ELAVL2 (ENSBTAG00000046348) #24	IZUMO3 (ENSBTAG00000023412) #25	TUSC1 (ENSBTAG00000008551) #26	ENSBTAG00000052519	ATP6V0C (ENSBTAG00000026428)	CAAP1 (ENSBTAG00000001223) #28	PLAA (ENSBTAG00000013011) #29	LRRC19 (ENSBTAG00000043983) #30	IFT74 (ENSBTAG00000019568) #31	TEK (ENSBTAG00000020148) #32	EQTN (ENSBTAG00000034391)	IFNK (ENSBTAG00000006853) #35	MOB3B (ENSBTAG00000000804) #36	C9orf72 (ENSBTAG00000010059) #37	LINGO2 (ENSBTAG00000016070)
American bison	MODERN SPECIES	3240					ENSBBBG00000018170 #8	ENSBBBG00000018163 #8	ENSBBBG00000009067 #9	ENSBBBG00000018145 #8	ENSBBBG00000006857 #8	IFNE (ENSBBBG00000018139) ##7	MTAP (ENSBBBG00000018131) #19	CDKN2A (ENSBBBG00000007436)	ENSBBBG00000018093	ENSBBBG00000018086	ENSBBBG00000004445	DMRTA1 (ENSBBBG00000018078) #22	ELAVL2 (ENSBBBG00000018068) #24	IZUMO3 (ENSBBBG00000018026) #25	TUSC1 (ENSBBBG00000008010) #26	ENSBBBG00000004430	CAAP1 (ENSBBBG00000017988) #28	PLAA (ENSBBBG00000017959) #29	IFT74 (ENSBBBG00000017924) #31	LRRC19 (ENSBBBG00000017856) #30	TEK (ENSBBBG00000008384) #32	MOB3B (ENSBBBG00000017671) #36	IFNK (ENSBBBG00000017664) #35	C9orf72 (ENSBBBG00000017654) #37	LINGO2 (ENSBBBG00000017617)	ENSBBBG00000017613	ENSBBBG00000017610
Caprinae	ANCESTRAL SPECIES	43	ENSGT01100000263642.c.b.a.b	ENSGT01000000214430.a.b.n.b #7	ENSGT01000000214430.a.a.a.b.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.a.b #8	ENSGT01000000214430.a.a.a.a.a.b.bb.a #9	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.b.b #8	ENSGT01000000214430.a.a.a.a.a.b.bb.b.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.b.h ##7	ENSGT01000000214430.a.a.a.a.a.b.bb.b.a.b #9	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT01100000266201	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01000000214430.b #35	ENSGT01050000244898.a.a.a.b #36	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Rambouillet Sheep	MODERN SPECIES	11	KLHL9 (ENSOARG00020007161) #13	IFND (ENSOARG00020007178) ##7	ENSOARG00020007193 #9	ENSOARG00020007216 #8	ENSOARG00020007263 #7	ENSOARG00020007314	ENSOARG00020007372 #8	ENSOARG00020007392 #9	IFNT6 (ENSOARG00020007406) #8	TP-1P8 (ENSOARG00020007442) #8	ENSOARG00020007481 #8	IFNE (ENSOARG00020007524) ##7	ENSOARG00020007545 #19	CDKN2A (ENSOARG00020007568)	CDKN2B (ENSOARG00020007616) #20	DMRTA1 (ENSOARG00020007643) #22	ELAVL2 (ENSOARG00020007662) #24	ENSOARG00020007723	IZUMO3 (ENSOARG00020007782) #25	TUSC1 (ENSOARG00020007925) #26	PLAA (ENSOARG00020008093) #29	IFT74 (ENSOARG00020008192) #31	LRRC19 (ENSOARG00020008306) #30	ENSOARG00020008357	TEK (ENSOARG00020008433) #32	MOB3B (ENSOARG00020008934) #36	ENSOARG00020008983	IFNK (ENSOARG00020009030) #35	C9orf72 (ENSOARG00020009060) #37	LINGO2 (ENSOARG00020009133)	ENSOARG00020009145
Goat	MODERN SPECIES	27	ENSCHIG00000012674 #8	ENSCHIG00000008290 #7	ENSCHIG00000008596	ENSCHIG00000009514 #8	ENSCHIG00000001968 #8	ENSCHIG00000005142 #8	ENSCHIG00000025046 ##7	ENSCHIG00000009474 #9	ENSCHIG00000019572 #8	ENSCHIG00000011025 #8	IFNE (ENSCHIG00000008081) ##7	MTAP (ENSCHIG00000014710) #19	ENSCHIG00000018121	CDKN2A (ENSCHIG00000025939)	CDKN2B (ENSCHIG00000025845) #20	DMRTA1 (ENSCHIG00000023134) #22	ENSCHIG00000018988	ELAVL2 (ENSCHIG00000025894) #24	ENSCHIG00000006162	IZUMO3 (ENSCHIG00000018315) #25	ENSCHIG00000003269	TUSC1 (ENSCHIG00000012670) #26	ENSCHIG00000026276	CAAP1 (ENSCHIG00000017091) #28	PLAA (ENSCHIG00000014920) #29	LRRC19 (ENSCHIG00000024759) #30	IFT74 (ENSCHIG00000009508) #31	TEK (ENSCHIG00000013962) #32	EQTN (ENSCHIG00000008768) #34	IFNK (ENSCHIG00000016395) #35	MOB3B (ENSCHIG00000011582) #36
Siberian musk deer	MODERN SPECIES	108	ENSMMSG00000000952 #9	ENSMMSG00000000940 #8	ENSMMSG00000000930 #8	ENSMMSG00000000919 #8	ENSMMSG00000000905 #9	ENSMMSG00000000898 #8	ENSMMSG00000000887 #8	ENSMMSG00000000873 #9	ENSMMSG00000000831	ENSMMSG00000000820 ##7	ENSMMSG00000000807 ##7	ENSMMSG00000000787 ##7	ENSMMSG00000000778 #8	ENSMMSG00000000758 #19	CDKN2A (ENSMMSG00000000727)	DMRTA1 (ENSMMSG00000000694) #22	ENSMMSG00000000683	ELAVL2 (ENSMMSG00000000635) #24	ENSMMSG00000000596	IZUMO3 (ENSMMSG00000000550) #25	TUSC1 (ENSMMSG00000000526) #26	ENSMMSG00000000515	CAAP1 (ENSMMSG00000000493) #28	PLAA (ENSMMSG00000000462) #29	LRRC19 (ENSMMSG00000000437) #30	IFT74 (ENSMMSG00000000361) #31	TEK (ENSMMSG00000000195) #32	ENSMMSG00000000118	ENSMMSG00000000106 #35	MOB3B (ENSMMSG00000000088) #36	C9orf72 (ENSMMSG00000000067) #37
Yarkand deer	MODERN SPECIES	21	MLLT3 (ENSCHYG00000014130)	FOCAD (ENSCHYG00000023701)	HACD4 (ENSCHYG00000023620)	ENSCHYG00000023601 #7	ENSCHYG00000023588 ##7	ENSCHYG00000023573 #7	ENSCHYG00000023566 #8	ENSCHYG00000023495 #8	ENSCHYG00000023454 #8	KLHL9 (ENSCHYG00000023441) #13	ENSCHYG00000023424 #8	IFNE (ENSCHYG00000023410) ##7	ENSCHYG00000023395	ENSCHYG00000023368 #19	ENSCHYG00000023337 #20	DMRTA1 (ENSCHYG00000023312) #22	ELAVL2 (ENSCHYG00000023207) #24	ENSCHYG00000023179	ENSCHYG00000023157	IZUMO3 (ENSCHYG00000023052) #25	ENSCHYG00000023030	TUSC1 (ENSCHYG00000023011) #26	ENSCHYG00000022983	CAAP1 (ENSCHYG00000022921) #28	PLAA (ENSCHYG00000022781) #29	LRRC19 (ENSCHYG00000022730) #30	IFT74 (ENSCHYG00000022499) #31	TEK (ENSCHYG00000021500) #32	ENSCHYG00000021324	C9orf72 (ENSCHYG00000021206) #37	LINGO2 (ENSCHYG00000021182)
Camelidae	ANCESTRAL SPECIES	104										ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665
Arabian camel	MODERN SPECIES	30	IFNB1 (ENSCDRG00005001381) #7	ENSCDRG00005001391 ##7	ENSCDRG00005001399 #8	ENSCDRG00005001408 #8	ENSCDRG00005001419 ##7	ENSCDRG00005001435 #8	ENSCDRG00005001540 #13	ENSCDRG00005001560	ENSCDRG00005001572 #9	ENSCDRG00005001595 #9	ENSCDRG00005001609 #8	IFNE (ENSCDRG00005001617) ##7	ENSCDRG00005001627 #19	ENSCDRG00005001648	CDKN2B (ENSCDRG00005001668) #20	DMRTA1 (ENSCDRG00005001683) #22	ENSCDRG00005001690	ELAVL2 (ENSCDRG00005001709) #24	IZUMO3 (ENSCDRG00005001756) #25	ENSCDRG00005001804	CAAP1 (ENSCDRG00005001831) #28	PLAA (ENSCDRG00005001853) #29	IFT74 (ENSCDRG00005001917) #31	LRRC19 (ENSCDRG00005001952) #30	TEK (ENSCDRG00005001992) #32	ENSCDRG00005002128 #34	MOB3B (ENSCDRG00005002177) #36	IFNK (ENSCDRG00005002184) #35	C9orf72 (ENSCDRG00005002198) #37	LINGO2 (ENSCDRG00005002218)	ENSCDRG00005002221
Alpaca	MODERN SPECIES	5674																DMRTA1 (ENSVPAG00000009303) #22
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000167452	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Carnivora	ANCESTRAL SPECIES	18	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000167452	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Caniformia	ANCESTRAL SPECIES	16	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000167452	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Caniformia_b	ANCESTRAL SPECIES	12	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000167452	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00390000009268.y.b
Ursidae	ANCESTRAL SPECIES	6	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b.nb.b #9	ENSGT01000000214430.a.a.a.a.a.b.nb.a #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.ob #9	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00390000009268.y.b
Ursus	ANCESTRAL SPECIES	58											ENSGT01000000214430.a.a.a.a.a.b.nb.b.c.a #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a	ENSGT00530000064170.e	ENSGT00390000007535.f
American black bear	MODERN SPECIES	7902																DMRTA1 (ENSUAMG00000009085) #22
Polar bear	MODERN SPECIES	191												ENSUMAG00000005557 #9	IFNE (ENSUMAG00000005586) ##7	MTAP (ENSUMAG00000005601) #19	CDKN2B (ENSUMAG00000005604) #20	DMRTA1 (ENSUMAG00000005623) #22	ELAVL2 (ENSUMAG00000005644) #24	IZUMO3 (ENSUMAG00000005720) #25	ENSUMAG00000005731	CAAP1 (ENSUMAG00000005736) #28	PLAA (ENSUMAG00000005741) #29	IFT74 (ENSUMAG00000005746) #31	LRRC19 (ENSUMAG00000005751) #30	TEK (ENSUMAG00000005756) #32	MOB3B (ENSUMAG00000005779) #36	IFNK (ENSUMAG00000005782) #35	C9orf72 (ENSUMAG00000005785) #37	LINGO2 (ENSUMAG00000005792)	ENSUMAG00000005799	ACO1 (ENSUMAG00000005807)	RIGI (ENSUMAG00000005813)
Giant Panda	MODERN SPECIES	17	FOCAD (ENSAMEG00000002988)	HACD4 (ENSAMEG00000003020)	ENSAMEG00000026360	IFNB1 (ENSAMEG00000020237) #7	ENSAMEG00000003028 ##7	ENSAMEG00000027172 #9	ENSAMEG00000020238 #9	KLHL9 (ENSAMEG00000020249) #13	ENSAMEG00000020239 ##7	ENSAMEG00000030690 #9	ENSAMEG00000028633 #9	MTAP (ENSAMEG00000007509) #19	ENSAMEG00000019101	CDKN2B (ENSAMEG00000007545) #20	ENSAMEG00000009154	DMRTA1 (ENSAMEG00000007553) #22	ELAVL2 (ENSAMEG00000007555) #24	IZUMO3 (ENSAMEG00000007571) #25	TUSC1 (ENSAMEG00000023759) #26	CAAP1 (ENSAMEG00000005485) #28	PLAA (ENSAMEG00000005498) #29	IFT74 (ENSAMEG00000005542) #31	LRRC19 (ENSAMEG00000005554) #30	TEK (ENSAMEG00000001724) #32	ENSAMEG00000001808	ENSAMEG00000001815 #34	MOB3B (ENSAMEG00000001822) #36	IFNK (ENSAMEG00000018552) #35	C9orf72 (ENSAMEG00000001825) #37	LINGO2 (ENSAMEG00000019218)	ENSAMEG00000026262
Mustelinae	ANCESTRAL SPECIES	98	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b.pb.a.b.b.b #9	ENSGT01000000214430.a.a.a.a.a.b.pb.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b.qb #9	ENSGT01000000214430.a.a.a.a.a.b.pb.a.b.a.b #9	ENSGT01000000214430.a.a.a.a.a.b.pb.a.b.a.a.a #9	ENSGT01000000214430.a.a.a.a.a.b.pb.a.a #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000167452	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665
American mink	MODERN SPECIES	117	ENSNVIG00000012786	ENSNVIG00000012773	FOCAD (ENSNVIG00000012579)	HACD4 (ENSNVIG00000012558)	IFNB1 (ENSNVIG00000012557) #7	ENSNVIG00000012545 ##7	ENSNVIG00000012526 #9	ENSNVIG00000012512 #9	ENSNVIG00000012495 #9	ENSNVIG00000012477 #9	KLHL9 (ENSNVIG00000012468) #13	ENSNVIG00000012457 #9	ENSNVIG00000012437 #9	MTAP (ENSNVIG00000012386) #19	CDKN2B (ENSNVIG00000012369) #20	DMRTA1 (ENSNVIG00000012357) #22	ELAV2 (ENSNVIG00000012261) #24	IZUMO3 (ENSNVIG00000012191) #25	TUSC1 (ENSNVIG00000012160) #26	CAAP1 (ENSNVIG00000012140) #28	PLAA (ENSNVIG00000012114) #29	LRRC19 (ENSNVIG00000012104) #30	IFT74 (ENSNVIG00000012021) #31	TEK (ENSNVIG00000011869) #32	ENSNVIG00000011848	IFNK (ENSNVIG00000011839) #35	MOB3B (ENSNVIG00000011823) #36	CI072 (ENSNVIG00000011758) #37	LINGO2 (ENSNVIG00000011739)
Ferret	MODERN SPECIES	244	ENSMPUG00000019506 #9	IFNG (ENSMPUG00000019499) #9	ENSMPUG00000019818 #9	ENSMPUG00000019816 #9	ENSMPUG00000019811 #9	ENSMPUG00000019808 #9	ENSMPUG00000019804 #9	ENSMPUG00000019803 #9	ENSMPUG00000019801 #9	ENSMPUG00000019798 #9	IFNE (ENSMPUG00000015977) ##7	MTAP (ENSMPUG00000015976) #19	CDKN2A (ENSMPUG00000015974)	ENSMPUG00000015973	CDKN2B (ENSMPUG00000015971) #20	DMRTA1 (ENSMPUG00000015969) #22	ENSMPUG00000019796	ELAVL2 (ENSMPUG00000015967) #24	IZUMO3 (ENSMPUG00000015965) #25	ENSMPUG00000015963	CAAP1 (ENSMPUG00000015951) #28	PLAA (ENSMPUG00000015945) #29	LRRC19 (ENSMPUG00000015943) #30	IFT74 (ENSMPUG00000015939) #31	TEK (ENSMPUG00000015934) #32	EQTN (ENSMPUG00000015926) #34	MOB3B (ENSMPUG00000015925) #36	IFNK (ENSMPUG00000019794) #35	C9orf72 (ENSMPUG00000015924) #37	ENSMPUG00000015923	ENSMPUG00000019791
Canidae	ANCESTRAL SPECIES	9	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b.mb.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.mb.a #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Canis_lupus	ANCESTRAL SPECIES	15	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b.mb.a.b.a.a.b.b.b.b #9	ENSGT01000000214430.a.a.a.a.a.b.mb.a.b.a.a.b.b.b.a.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Dog	MODERN SPECIES	2	MLLT3 (ENSCAFG00845014820)	FOCAD (ENSCAFG00845015191)	HACD4 (ENSCAFG00845016235)	IFNB1 (ENSCAFG00845016293) #7	ENSCAFG00845016327 ##7	IFNA5 (ENSCAFG00845016367) #9	ENSCAFG00845016397 #9	ENSCAFG00845015906 #9	ENSCAFG00845016083 #9	ENSCAFG00845016109 #9	ENSCAFG00845016139 #9	ENSCAFG00845016171 #9	IFNA7 (ENSCAFG00845016199) #9	MTAP (ENSCAFG00845016288) #19	CDKN2B (ENSCAFG00845016466) #20	DMRTA1 (ENSCAFG00845016666) #22	ENSCAFG00845016700	ELAVL2 (ENSCAFG00845016769) #24	ENSCAFG00845016853	ENSCAFG00845016912	IZUMO3 (ENSCAFG00845017047) #25	ENSCAFG00845017168	TUSC1 (ENSCAFG00845017215) #26	CAAP1 (ENSCAFG00845017294) #28	PLAA (ENSCAFG00845017393) #29	IFT74 (ENSCAFG00845017634) #31	LRRC19 (ENSCAFG00845017872) #30	TEK (ENSCAFG00845018055) #32	ENSCAFG00845018372	ENSCAFG00845018629 #34	MOB3B (ENSCAFG00845018684) #36
Dingo	MODERN SPECIES	366	HACD4 (ENSCAFG00020013722)	ENSCAFG00020013733 #9	ENSCAFG00020013742 #9	ENSCAFG00020013743 #9	ENSCAFG00020013747 #9	ENSCAFG00020013748 #9	KLHL9 (ENSCAFG00020013752) #13	ENSCAFG00020013757 #9	ENSCAFG00020013761 #9	ENSCAFG00020013769 #9	ENSCAFG00020013776 #9	IFNE (ENSCAFG00020013779) ##7	MTAP (ENSCAFG00020013792) #19	ENSCAFG00020013796	CDKN2B (ENSCAFG00020013797) #20	DMRTA1 (ENSCAFG00020013824) #22	ELAVL2 (ENSCAFG00020013836) #24	ENSCAFG00020014371	IZUMO3 (ENSCAFG00020014376) #25	TUSC1 (ENSCAFG00020014387) #26	CAAP1 (ENSCAFG00020014399) #28	PLAA (ENSCAFG00020014401) #29	IFT74 (ENSCAFG00020014404) #31	LRRC19 (ENSCAFG00020014406) #30	TEK (ENSCAFG00020014418) #32	MOB3B (ENSCAFG00020014499) #36	IFNK (ENSCAFG00020014500) #35	C9orf72 (ENSCAFG00020014504) #37	LINGO2 (ENSCAFG00020014541)	ENSCAFG00020014544	ACO1 (ENSCAFG00020014553)
Red fox	MODERN SPECIES	269							KLHL9 (ENSVVUG00000008000) #13	ENSVVUG00000008014 #9	ENSVVUG00000008019 #9	ENSVVUG00000008026 #9	ENSVVUG00000008029 #9	IFNE (ENSVVUG00000008031) ##7	ENSVVUG00000008036 #19	ENSVVUG00000008043	ENSVVUG00000008048	ENSVVUG00000008072 #22
Felidae	ANCESTRAL SPECIES	16	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.b.jb.b #9	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00390000012138.a.a.i.a.a	ENSGT00390000008732.a.a.c.b.a	ENSGT00940000156823.e #24	ENSGT00950000183152.A.v	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37
Panthera	ANCESTRAL SPECIES	11	ENSGT00940000158215	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.a.a.a.b.jb.b #9	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00390000012138.a.a.i.a.a	ENSGT00390000008732.a.a.c.b.a	ENSGT00940000156823.e #24	ENSGT00950000183152.A.v	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37
Tiger	MODERN SPECIES	588	RPS6 (ENSPTIG00000009901)	ACER2 (ENSPTIG00000009123)	SLC24A2 (ENSPTIG00000006232)	ENSPTIG00000019938	ENSPTIG00000006649	ENSPTIG00000019535	FOCAD (ENSPTIG00000016961)	HACD4 (ENSPTIG00000016456)	IFNB1 (ENSPTIG00000006556) #7	ENSPTIG00000015362 #8	ENSPTIG00000012484 #9	ENSPTIG00000006494	IFNE (ENSPTIG00000006483) ##7	MTAP (ENSPTIG00000010060) #19	ENSPTIG00000009528	DMRTA1 (ENSPTIG00000008302) #22	ELAVL2 (ENSPTIG00000005627) #24	ENSPTIG00000006398	IZUMO3 (ENSPTIG00000021039) #25	CAAP1 (ENSPTIG00000020860) #28	PLAA (ENSPTIG00000019644) #29	LRRC19 (ENSPTIG00000019449) #30	IFT74 (ENSPTIG00000018434) #31	TEK (ENSPTIG00000010193) #32	ENSPTIG00000008460 #34	MOB3B (ENSPTIG00000008390) #36
Panthera_a	ANCESTRAL SPECIES	10												ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00390000012138.a.a.i.a.a	ENSGT00390000008732.a.a.c.b.a	ENSGT00940000156823.e #24	ENSGT00950000183152.A.v	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37
lion	MODERN SPECIES	13	ENSPLOG00000005809	IL33 (ENSPLOG00000005762)	TPD52L3 (ENSPLOG00000005730)	UHRF2 (ENSPLOG00000005717)	GLDC (ENSPLOG00000005598)	KDM4C (ENSPLOG00000005468)	DMAC1 (ENSPLOG00000005410)	PTPRD (ENSPLOG00000022133)	TYRP1 (ENSPLOG00000021962)	LURAP1L (ENSPLOG00000021948)	MPDZ (ENSPLOG00000021010)	ENSPLOG00000020743 #8	IFNE (ENSPLOG00000020717) ##7	MTAP (ENSPLOG00000020698) #19	CDKN2B (ENSPLOG00000020634) #20	DMRTA1 (ENSPLOG00000020604) #22	ENSPLOG00000020597	ENSPLOG00000020585	ELAVL2 (ENSPLOG00000020522) #24	ENSPLOG00000020502	IZUMO3 (ENSPLOG00000020427) #25	TUSC1 (ENSPLOG00000020292) #26	CAAP1 (ENSPLOG00000020232) #28	PLAA (ENSPLOG00000020119) #29	LRRC19 (ENSPLOG00000020088) #30	IFT74 (ENSPLOG00000020064) #31	TEK (ENSPLOG00000019607) #32	MOB3B (ENSPLOG00000019495) #36	IFNK (ENSPLOG00000019484) #35	C9orf72 (ENSPLOG00000019440) #37	LINGO2 (ENSPLOG00000019417)
leopard	MODERN SPECIES	133											IFNE (ENSPPRG00000012513) ##7	MTAP (ENSPPRG00000019253) #19	ENSPPRG00000019225	ENSPPRG00000018980	CDKN2B (ENSPPRG00000018675) #20	DMRTA1 (ENSPPRG00000018624) #22	ENSPPRG00000012506	ENSPPRG00000012498	ELAVL2 (ENSPPRG00000018510) #24	ENSPPRG00000012485	IZUMO3 (ENSPPRG00000017890) #25	TUSC1 (ENSPPRG00000012467) #26
Cat	MODERN SPECIES	244	SLC24A2 (ENSFCAG00000010086)	ENSFCAG00000048731	MLLT3 (ENSFCAG00000023293)	FOCAD (ENSFCAG00000004596)	ENSFCAG00000049870	HACD4 (ENSFCAG00000031990)	IFNB1 (ENSFCAG00000004604) #7	ENSFCAG00000023458 ##7	KLHL9 (ENSFCAG00000012623) #13	IFNA13 (ENSFCAG00000045072) #9	IFNA7 (ENSFCAG00000046651) #9	IFNW12 (ENSFCAG00000044935) #8	MTAP (ENSFCAG00000038221) #19	CDKN2A (ENSFCAG00000022826)	ENSFCAG00000038878	DMRTA1 (ENSFCAG00000014743) #22	ENSFCAG00000040447	ENSFCAG00000040593	ELAVL2 (ENSFCAG00000011976) #24	ENSFCAG00000025255	IZUMO3 (ENSFCAG00000015750) #25	CAAP1 (ENSFCAG00000022307) #28	PLAA (ENSFCAG00000023980) #29	IFT74 (ENSFCAG00000026070) #31	LRRC19 (ENSFCAG00000025095) #30	TEK (ENSFCAG00000002830) #32	MOB3B (ENSFCAG00000012089) #36	EQTN (ENSFCAG00000040310) #34	C9orf72 (ENSFCAG00000001914) #37	LINGO2 (ENSFCAG00000007073)	ENSFCAG00000048601
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.a.a #8	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.r #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Equus	ANCESTRAL SPECIES	37	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b.q #7	ENSGT01000000214430.a.a.a.b ##7	ENSGT01000000214430.a.b.r #7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a.a.b.a #8	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.a.a.a.a #8	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.r.b #19	ENSGT00950000182991.B.r.a #19	ENSGT00950000182991.B.q #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT00950000184123	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Horse	MODERN SPECIES	15	HACD4 (ENSECAG00000000343)	IF1DA2 (ENSECAG00000057166) #7	IF1CA1 (ENSECAG00000040808) ##7	IF1CA2 (ENSECAG00000042982) ##7	ENSECAG00000047150 #7	KLHL9 (ENSECAG00000005817) #13	IFN-OMEGA2 (ENSECAG00000036561) #8	ENSECAG00000031604 #9	ENSECAG00000054830 #8	IFNE (ENSECAG00000004315) ##7	ENSECAG00000037786	ENSECAG00000033009 #19	ENSECAG00000040430 #19	ENSECAG00000060049 #19	CDKN2A (ENSECAG00000018552)	DMRTA1 (ENSECAG00000019138) #22	ELAVL2 (ENSECAG00000020142) #24	IZUMO3 (ENSECAG00000014102) #25	ENSECAG00000047777	CAAP1 (ENSECAG00000018209) #28	PLAA (ENSECAG00000020120) #29	IFT74 (ENSECAG00000021030) #31	LRRC19 (ENSECAG00000016547) #30	TEK (ENSECAG00000016566) #32	ENSECAG00000030328	EQTN (ENSECAG00000021018)	MOB3B (ENSECAG00000021621) #36	IFNK (ENSECAG00000021633) #35	C9orf72 (ENSECAG00000022028) #37	ENSECAG00000046957	ENSECAG00000043521
Donkey	MODERN SPECIES	15	ENSEASG00005025577 #8	ENSEASG00005031204 #8	ENSEASG00005038467 ##7	ENSEASG00005027754 #9	ENSEASG00005022439 ##7	ENSEASG00005028745 #9	ENSEASG00005029456 #9	ENSEASG00005032209 #8	ENSEASG00005022446 ##7	ENSEASG00005030405 #19	ENSEASG00005029169 #19	ENSEASG00005025758 #19	ENSEASG00005033213	CDKN2A (ENSEASG00005004708)	CDKN2B (ENSEASG00005029765) #20	DMRTA1 (ENSEASG00005036106) #22	ELAVL2 (ENSEASG00005004697) #24	IZUMO3 (ENSEASG00005031755) #25	CAAP1 (ENSEASG00005004687) #28	PLAA (ENSEASG00005004682) #29	LRRC19 (ENSEASG00005004679) #30	IFT74 (ENSEASG00005004662) #31	ENSEASG00005004648 #32	IFNK (ENSEASG00005004640) #35	MOB3B (ENSEASG00005004638) #36	C9orf72 (ENSEASG00005004632) #37	ENSEASG00005029524	LINGO2 (ENSEASG00005004629)	ACO1 (ENSEASG00005004602)	TOPORS (ENSEASG00005004584)	RIGI (ENSEASG00005004589)
Chiroptera	ANCESTRAL SPECIES	40	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.r #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772
Microchiroptera	ANCESTRAL SPECIES	36	ENSGT00390000009819.a.b.a.a.b.a	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.a.a.a.b #8	ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT00940000154359.e #13	ENSGT01000000214430.a.a.b ##7	ENSGT00950000182991.B.r #19	ENSGT00940000163078	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000154367.b.o.b
Greater horseshoe bat	MODERN SPECIES	3	ENSRFEG00010007907 #8	ENSRFEG00010007861 ##7	KLHL9 (ENSRFEG00010007851) #13	ENSRFEG00010007820	ENSRFEG00010007732 #8	ENSRFEG00010007711 ##7	ENSRFEG00010007636 #9	ENSRFEG00010007618 ##7	ENSRFEG00010007545 #9	ENSRFEG00010007530 ##7	IFNE (ENSRFEG00010007517) ##7	ENSRFEG00010007503	MTAP (ENSRFEG00010007485) #19	CDKN2A (ENSRFEG00010007449)	CDKN2B (ENSRFEG00010007418) #20	DMRTA1 (ENSRFEG00010007378) #22	ENSRFEG00010007353	ELAVL2 (ENSRFEG00010007282) #24	IZUMO3 (ENSRFEG00010007098) #25	TUSC1 (ENSRFEG00010007065) #26	CAAP1 (ENSRFEG00010007004) #28	PLAA (ENSRFEG00010006913) #29	LRRC19 (ENSRFEG00010006861) #30	IFT74 (ENSRFEG00010006800) #31	TEK (ENSRFEG00010006469) #32	MOB3B (ENSRFEG00010019145) #36	IFNK (ENSRFEG00010019129) #35	C9orf72 (ENSRFEG00010019054) #37	LINGO2 (ENSRFEG00010019029)	ACO1 (ENSRFEG00010018977)	ENSRFEG00010018955
Microbat	MODERN SPECIES	1208																DMRTA1 (ENSMLUG00000013312) #22	ELAVL2 (ENSMLUG00000014210) #24	ENSMLUG00000028570
Megabat	MODERN SPECIES	7001																DMRTA1 (ENSPVAG00000011810) #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000160640 #22
Common shrew	MODERN SPECIES	11504																ENSSARG00000007336 #22
Hedgehog	MODERN SPECIES	12429																DMRTA1 (ENSEEUG00000010425) #22
Atlantogenata	ANCESTRAL SPECIES	12											ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00390000007109 #31	ENSGT00940000161278 #30	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Afrotheria	ANCESTRAL SPECIES												ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a	ENSGT00530000064170.e	ENSGT00390000007535
Afrotheria_a	ANCESTRAL SPECIES												ENSGT01000000214430.a.a.a.a.a.b #9	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017601 #25	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00390000010786 #34	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a
Elephant	MODERN SPECIES	472	SLC24A2 (ENSLAFG00000017523)	MLLT3 (ENSLAFG00000002042)	FOCAD (ENSLAFG00000011670)	HACD4 (ENSLAFG00000011684)	IFNB1 (ENSLAFG00000031186) #7	ENSLAFG00000032702 ##7	ENSLAFG00000026307 #8	ENSLAFG00000032074 #9	ENSLAFG00000029104 #9	ENSLAFG00000030457 #9	ENSLAFG00000027976 #9	ENSLAFG00000031123 #8	MTAP (ENSLAFG00000009552) #19	ENSLAFG00000009554	CDKN2B (ENSLAFG00000022894) #20	DMRTA1 (ENSLAFG00000013860) #22	ELAVL2 (ENSLAFG00000009938) #24	ENSLAFG00000026655	IZUMO3 (ENSLAFG00000006472) #25	TUSC1 (ENSLAFG00000013180) #26	CAAP1 (ENSLAFG00000010933) #28	ENSLAFG00000010935 #29	LRRC19 (ENSLAFG00000009391) #30	IFT74 (ENSLAFG00000012358) #31	TEK (ENSLAFG00000009659) #32	EQTN (ENSLAFG00000008794) #34	MOB3B (ENSLAFG00000008800) #36	IFNK (ENSLAFG00000004739) #35	C9orf72 (ENSLAFG00000008980) #37	LINGO2 (ENSLAFG00000007957)	ENSLAFG00000028487
Hyrax	MODERN SPECIES	8181																ENSPCAG00000015491 #22
Tenrec	MODERN SPECIES	6919																ENSETEG00000010470 #22
Xenarthra	ANCESTRAL SPECIES	915											ENSGT01000000214430.a.a.a.a.b ##7	ENSGT01000000214430.a.a.a.a.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000165099	ENSGT00940000162423 #20	ENSGT00940000160640 #22
Armadillo	MODERN SPECIES	1325	FAM83C (ENSDNOG00000034661)	UQCC1 (ENSDNOG00000044074)	ENSDNOG00000048961 #8	ENSDNOG00000049315 ##7	ENSDNOG00000035377 #8	ENSDNOG00000031846 ##7	ENSDNOG00000041724 ##7	ENSDNOG00000047176 #8	ENSDNOG00000040346 #8	ENSDNOG00000049760 ##7	ENSDNOG00000031518 ##7	ENSDNOG00000043902 #8	MTAP (ENSDNOG00000008670) #19	ENSDNOG00000011307	CDKN2B (ENSDNOG00000000334) #20	DMRTA1 (ENSDNOG00000036462) #22	ENSDNOG00000045256
Sloth	MODERN SPECIES	8519																DMRTA1 (ENSCHOG00000000826) #22
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00950000182910.a.b	ENSGT00940000160714	ENSGT00940000156806	ENSGT00940000153558.b	ENSGT00940000155007	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.a.b #7	ENSGT01000000214430.a.a.a.c.b #8	ENSGT01000000214430.a.a.a.c.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000165099	ENSGT00940000162423.a #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT00940000165347	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a	ENSGT00530000064170.e
Marsupialia_b	ANCESTRAL SPECIES	18													ENSGT01000000214430.a.a.a.c.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000162423.a #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000013920 #26	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a	ENSGT00530000064170.e	ENSGT01020000230598
Diprotodontia	ANCESTRAL SPECIES	75													ENSGT01000000214430.a.a.a.c.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000162423.a #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a	ENSGT00530000064170.e	ENSGT01020000230598	ENSGT00390000007535
Diprotodontia_a	ANCESTRAL SPECIES	52	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a	ENSGT00950000182913.B	ENSGT00940000164186.a	ENSGT00390000005897	ENSGT00940000158196	ENSGT00940000159053	ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT01000000214430.a.a.a.c.a.a.a #8	ENSGT00950000182991.B #19	ENSGT00940000162423.a #20	ENSGT00940000160640 #22	ENSGT00940000156823.e #24	ENSGT00390000017010 #28	ENSGT00550000074944 #29	ENSGT00940000161278 #30	ENSGT00390000007109 #31	ENSGT00940000158840 #32	ENSGT01050000244898.a.a.a.b #36	ENSGT01000000214430.b #35	ENSGT00390000005644 #37	ENSGT00940000156665	ENSGT00940000157772	ENSGT00940000153173.a	ENSGT00530000064170.e	ENSGT01020000230598	ENSGT00390000007535
koala	MODERN SPECIES	298					ENSPCIG00000010226	ROR2 (ENSPCIG00000010230)	ENSPCIG00000037332	ENSPCIG00000030719 #8	ENSPCIG00000031736 #8	ENSPCIG00000031290 #8	MTAP (ENSPCIG00000011680) #19	ENSPCIG00000011682	ENSPCIG00000011683 #20	ENSPCIG00000011685 #20	ENSPCIG00000011686	DMRTA1 (ENSPCIG00000033586) #22
Common wonbat	MODERN SPECIES	1066	MCC (ENSVURG00010006942)	DIRAS2 (ENSVURG00010006925)	SYK (ENSVURG00010006902)	AUH (ENSVURG00010006880)	NFIL3 (ENSVURG00010006871)	ROR2 (ENSVURG00010006863)	ENSVURG00010006858	ENSVURG00010006835	ENSVURG00010006802 #8	ENSVURG00010006786 #8	ENSVURG00010006769 #8	MTAP (ENSVURG00010006757) #19	ENSVURG00010006754	ENSVURG00010006749	CDKN2B (ENSVURG00010006741) #20	DMRTA1 (ENSVURG00010006734) #22	ELAVL2 (ENSVURG00010006699) #24	ENSVURG00010006681	ENSVURG00010006661	ENSVURG00010006647	ENSVURG00010006632 #26	ENSVURG00010006621	ENSVURG00010006602	CAAP1 (ENSVURG00010006584) #28	PLAA (ENSVURG00010006575) #29	LRRC19 (ENSVURG00010006571) #30	IFT74 (ENSVURG00010006558) #31	TEK (ENSVURG00010006447) #32	ENSVURG00010006427 #35	MOB3B (ENSVURG00010006420) #36	C9orf72 (ENSVURG00010006400) #37
Wallaby	MODERN SPECIES	8454																ENSMEUG00000008505 #22
Opossum	MODERN SPECIES	5	ENSMODG00000039561	ENSMODG00000038835	FOCAD (ENSMODG00000003634)	HACD4 (ENSMODG00000003655)	ifn1 (ENSMODG00000025165) #7	ENSMODG00000003667 #8	ifn7 (ENSMODG00000038103) #8	ifn4 (ENSMODG00000049005) #8	ENSMODG00000045309 #8	ENSMODG00000003707 #8	ENSMODG00000042661 #8	ifn2 (ENSMODG00000042457) #8	MTAP (ENSMODG00000003781) #19	CDKN2A (ENSMODG00000003820)	CDKN2B (ENSMODG00000040122) #20	DMRTA1 (ENSMODG00000003829) #22	ENSMODG00000003880	ELAVL2 (ENSMODG00000003936) #24	ENSMODG00000047560 ##27	ENSMODG00000028074	ENSMODG00000045961	ENSMODG00000048618 ##27	ENSMODG00000028960 ##27	TUSC1 (ENSMODG00000004001) #26	ENSMODG00000038345 ##27	PLAA (ENSMODG00000004155) #29	IFT74 (ENSMODG00000004236) #31	LRRC19 (ENSMODG00000004246) #30	TEK (ENSMODG00000004269) #32	ENSMODG00000004305	MOB3B (ENSMODG00000004294) #36