Murinae	ANCESTRAL SPECIES	9	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089 #7	ENSGT00940000156552 #8	ENSGT00530000063873.A #9	ENSGT00530000063873.B #11	ENSGT00390000000801 #12	ENSGT00950000183214.a.b.a.b #13	ENSGT00940000155270 #15	ENSGT00940000157974 #16	ENSGT00940000153514.b #17	ENSGT00950000183014.f.a.h #18	ENSGT00940000160642 #19	ENSGT00440000037606.b #20	ENSGT00940000158781 #22	ENSGT00390000015769.B #24	ENSGT00940000162403 #25	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639	ENSGT00940000159743	ENSGT00940000163272.a.b	ENSGT00940000159232.h.b	ENSGT00940000159232.h.a	ENSGT00940000156190.h	ENSGT00390000004840
Mus	ANCESTRAL SPECIES	5	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089 #7	ENSGT00940000156552 #8	ENSGT00530000063873.A #9	ENSGT00530000063873.B #11	ENSGT00390000000801 #12	ENSGT00950000183214.a.b.a.b #13	ENSGT00940000155270 #15	ENSGT00940000157974 #16	ENSGT00940000153514.b #17	ENSGT00950000183014.f.a.h #18	ENSGT00940000160642 #19	ENSGT00440000037606.b #20	ENSGT00940000158781 #22	ENSGT00390000015769.B #24	ENSGT00940000162403 #25	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639	ENSGT00940000159743	ENSGT00940000153677.u.b.b.a.a.b	ENSGT00940000163272.a.a.j	ENSGT00940000163272.a.b	ENSGT00940000159232.h.b
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089 #7	ENSGT00940000156552 #8	ENSGT00530000063873.A #9	ENSGT00530000063873.B #11	ENSGT00390000000801 #12	ENSGT00950000183214.a.b.a.b #13	ENSGT00940000155270 #15	ENSGT00940000157974 #16	ENSGT00940000153514.b #17	ENSGT00950000183014.f.a.h #18	ENSGT00940000160642 #19	ENSGT00440000037606.b #20	ENSGT00940000158781 #22	ENSGT00390000015769.B #24	ENSGT00940000162403 #25	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a.c	ENSGT00940000162639	ENSGT00940000159743	ENSGT00940000153677.u.b.b.a.a.b	ENSGT00940000163272.a.a.j	ENSGT00940000163272.a.b	ENSGT00940000159232.h.b
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089.l ##7	ENSGT00940000156552 #8	ENSGT00530000063873.A #9	ENSGT00530000063873.B #11	ENSGT00390000000801 #12	ENSGT00950000183214.a.b.a.b #13	ENSGT00940000155270 #15	ENSGT00940000157974 #16	ENSGT00940000153514.b #17	ENSGT00950000183014.f.a.h #18	ENSGT00940000160642 #19	ENSGT00440000037606.b #20	ENSGT00940000158781 #22	ENSGT00390000015769.B #24	ENSGT00940000162403 #25	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a.c	ENSGT00940000162639	ENSGT00940000159743	ENSGT00940000153677.u.b.b.a.a.b	ENSGT00940000163272.a.a.j	ENSGT00940000163272.a.b	ENSGT00940000159232.h.b
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089.l ##7	ENSGT00940000156552 #8	ENSGT00530000063873.A #9	ENSGT00530000063873.B #11	ENSGT00390000000801 #12	ENSGT00950000183214.a.b.a.b #13	ENSGT00940000155270 #15	ENSGT00940000157974 #16	ENSGT00940000153514.b #17	ENSGT00950000183014.f.a.h #18	ENSGT00940000160642 #19	ENSGT00440000037606.b #20	ENSGT00940000158781 #22	ENSGT00390000015769.B #24	ENSGT00940000162403 #25	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a.c	ENSGT00940000162639	ENSGT00940000159743	ENSGT00940000153677.u.b.b.a.a.b	ENSGT00940000163272.a.a.j	ENSGT00940000163272.a.b	ENSGT00940000159232.h.b
Steppe mouse	MODERN SPECIES	44	ENSMSIG00000010702 #7	Raph1 (ENSMSIG00000010756) #8	Cd28 (ENSMSIG00000011356) #9	ENSMSIG00000011370 #10	Ctla4 (ENSMSIG00000011388) #11	Icos (ENSMSIG00000011424) #12	Pard3b (ENSMSIG00000011469) #13	ENSMSIG00000011764 #14	Nrp2 (ENSMSIG00000011775) #15	Ino80d (ENSMSIG00000012604) #16	Ndufs1 (ENSMSIG00000012674) #17	Eef1b2 (ENSMSIG00000012804) #18	Cmklr2 (ENSMSIG00000012880) #19	Zdbf2 (ENSMSIG00000012889) #20	ENSMSIG00000012937 #21	Adam23 (ENSMSIG00000012957) #22	ENSMSIG00000013264 #23	Gm39653 (ENSMSIG00000013270) #24	Dytn (ENSMSIG00000013289) #25
spretus	MODERN SPECIES		Carf (MGP_SPRETEiJ_G0014993)	Nbeal1 (MGP_SPRETEiJ_G0014994)	Cyp20a1 (MGP_SPRETEiJ_G0014995)	Abi2 (MGP_SPRETEiJ_G0014996) ##7	Raph1 (MGP_SPRETEiJ_G0014997) #8	Cd28 (MGP_SPRETEiJ_G0014998) #9	Ctla4 (MGP_SPRETEiJ_G0014999) #11	Icos (MGP_SPRETEiJ_G0015000) #12	Pard3b (MGP_SPRETEiJ_G0015001) #13	Nrp2 (MGP_SPRETEiJ_G0015002) #15	Ino80d (MGP_SPRETEiJ_G0015003) #16	Ndufs1 (MGP_SPRETEiJ_G0015004) #17	Eef1b2 (MGP_SPRETEiJ_G0015005) #18	Cmklr2 (MGP_SPRETEiJ_G0015006) #19	Zdbf2 (MGP_SPRETEiJ_G0015007) #20	Adam23 (MGP_SPRETEiJ_G0015008) #22	Dytn (MGP_SPRETEiJ_G0015009) #25	Mdh1b (MGP_SPRETEiJ_G0015010)	Fastkd2 (MGP_SPRETEiJ_G0015011)	MGP_SPRETEiJ_G0015012	Klf7 (MGP_SPRETEiJ_G0015013)	Creb1 (MGP_SPRETEiJ_G0015014)	Mettl21a (MGP_SPRETEiJ_G0015015)	Ccnyl1 (MGP_SPRETEiJ_G0015016)	Fzd5 (MGP_SPRETEiJ_G0015017)	Plekhm3 (MGP_SPRETEiJ_G0015018)	Akr1cl (MGP_SPRETEiJ_G0015019)	Cryge (MGP_SPRETEiJ_G0015020)	Crygd (MGP_SPRETEiJ_G0015021)	Crygc (MGP_SPRETEiJ_G0015022)	Crygb (MGP_SPRETEiJ_G0015023)
Mouse	MODERN SPECIES		Carf (ENSMUSG00000026017)	Nbeal1 (ENSMUSG00000073664)	Cyp20a1 (ENSMUSG00000049439)	Abi2 (ENSMUSG00000026782) ##7	Raph1 (ENSMUSG00000026014) #8	Cd28 (ENSMUSG00000026012) #9	Ctla4 (ENSMUSG00000026011) #11	Icos (ENSMUSG00000026009) #12	Pard3b (ENSMUSG00000052062) #13	Nrp2 (ENSMUSG00000025969) #15	Ino80d (ENSMUSG00000040865) #16	Ndufs1 (ENSMUSG00000025968) #17	Eef1b2 (ENSMUSG00000025967) #18	Cmklr2 (ENSMUSG00000046856) #19	Zdbf2 (ENSMUSG00000027520) #20	Adam23 (ENSMUSG00000025964) #22	Gm39653 (ENSMUSG00000115378) #24	Dytn (ENSMUSG00000069085) #25	Mdh1b (ENSMUSG00000025963)	Fastkd2 (ENSMUSG00000025962)	Klf7 (ENSMUSG00000025959)	Creb1 (ENSMUSG00000025958)	Mettl21a (ENSMUSG00000025956)	Ccnyl1 (ENSMUSG00000070871)	Fzd5 (ENSMUSG00000045005)	Plekhm3 (ENSMUSG00000051344)	Akr1cl (ENSMUSG00000025955)	Cryge (ENSMUSG00000070870)	Crygd (ENSMUSG00000067299)	Crygc (ENSMUSG00000025952)	Crygb (ENSMUSG00000073658)
Ryukyu mouse	MODERN SPECIES		Carf (MGP_CAROLIEiJ_G0014186)	Nbeal1 (MGP_CAROLIEiJ_G0014187)	Cyp20a1 (MGP_CAROLIEiJ_G0014188)	Abi2 (MGP_CAROLIEiJ_G0014189) #7	Raph1 (MGP_CAROLIEiJ_G0014190) #8	Cd28 (MGP_CAROLIEiJ_G0014191) #9	Ctla4 (MGP_CAROLIEiJ_G0014192) #11	Icos (MGP_CAROLIEiJ_G0014193) #12	Pard3b (MGP_CAROLIEiJ_G0014194) #13	Nrp2 (MGP_CAROLIEiJ_G0014195) #15	Ino80d (MGP_CAROLIEiJ_G0014196) #16	Ndufs1 (MGP_CAROLIEiJ_G0014197) #17	Eef1b2 (MGP_CAROLIEiJ_G0014198) #18	Cmklr2 (MGP_CAROLIEiJ_G0014199) #19	Zdbf2 (MGP_CAROLIEiJ_G0014200) #20	Adam23 (MGP_CAROLIEiJ_G0014201) #22	Dytn (MGP_CAROLIEiJ_G0014202) #25	Mdh1b (MGP_CAROLIEiJ_G0014203)	Fastkd2 (MGP_CAROLIEiJ_G0014204)	MGP_CAROLIEiJ_G0014205	Klf7 (MGP_CAROLIEiJ_G0014206)	Creb1 (MGP_CAROLIEiJ_G0014207)	Mettl21a (MGP_CAROLIEiJ_G0014208)	Ccnyl1 (MGP_CAROLIEiJ_G0014209)	Fzd5 (MGP_CAROLIEiJ_G0014210)	Plekhm3 (MGP_CAROLIEiJ_G0014211)	Akr1cl (MGP_CAROLIEiJ_G0014212)	Cryge (MGP_CAROLIEiJ_G0014213)	Crygd (MGP_CAROLIEiJ_G0014214)	Crygc (MGP_CAROLIEiJ_G0014215)	Crygb (MGP_CAROLIEiJ_G0014216)
Shrew mouse	MODERN SPECIES	18	Carf (MGP_PahariEiJ_G0027424)	MGP_PahariEiJ_G0027425	Cyp20a1 (MGP_PahariEiJ_G0027426)	Abi2 (MGP_PahariEiJ_G0027427) #7	Raph1 (MGP_PahariEiJ_G0027428) #8	Cd28 (MGP_PahariEiJ_G0027429) #9	Ctla4 (MGP_PahariEiJ_G0027430) #11	MGP_PahariEiJ_G0027431 #12	Pard3b (MGP_PahariEiJ_G0027432) #13	Nrp2 (MGP_PahariEiJ_G0027433) #15	Ino80d (MGP_PahariEiJ_G0027434) #16	MGP_PahariEiJ_G0027435 #17	Eef1b2 (MGP_PahariEiJ_G0027436) #18	Cmklr2 (MGP_PahariEiJ_G0027437) #19	Zdbf2 (MGP_PahariEiJ_G0027438) #20	Adam23 (MGP_PahariEiJ_G0027439) #22	Dytn (MGP_PahariEiJ_G0027440) #25	Mdh1b (MGP_PahariEiJ_G0027441)	Fastkd2 (MGP_PahariEiJ_G0027442)	MGP_PahariEiJ_G0027443	Klf7 (MGP_PahariEiJ_G0027444)	Creb1 (MGP_PahariEiJ_G0027445)	Mettl21a (MGP_PahariEiJ_G0027446)	Ccnyl1 (MGP_PahariEiJ_G0027447)	Fzd5 (MGP_PahariEiJ_G0027448)	Plekhm3 (MGP_PahariEiJ_G0027449)	Akr1cl (MGP_PahariEiJ_G0027450)	MGP_PahariEiJ_G0027451	Crygd (MGP_PahariEiJ_G0027452)	Crygc (MGP_PahariEiJ_G0027453)	Crygb (MGP_PahariEiJ_G0027454)
Rat	MODERN SPECIES	19	Nbeal1 (ENSRNOG00000021525)	Cyp20a1 (ENSRNOG00000017631)	Abi2 (ENSRNOG00000017707) #7	Raph1 (ENSRNOG00000014722) #8	Cd28 (ENSRNOG00000010283) #9	Ctla4 (ENSRNOG00000054129) #11	Icos (ENSRNOG00000046196) #12	Pard3b (ENSRNOG00000024345) #13	Nrp2 (ENSRNOG00000031232) #15	Rpl37-ps5 (ENSRNOG00000033803)	Ino80d (ENSRNOG00000024272) #16	Ndufs1 (ENSRNOG00000011849) #17	Eef1b2 (ENSRNOG00000024186) #18	Cmklr2 (ENSRNOG00000045532) #19	Zdbf2 (ENSRNOG00000024114) #20	Adam23 (ENSRNOG00000012424) #22	Fam237a (ENSRNOG00000054699) #24	Dytn (ENSRNOG00000042181) #25	Mdh1b (ENSRNOG00000012891)	ENSRNOG00000063009	Fastkd2 (ENSRNOG00000023923)	ENSRNOG00000063607	Klf7 (ENSRNOG00000046242)	LOC103690545 (ENSRNOG00000064370)	Creb1 (ENSRNOG00000013412)	Mettl21a (ENSRNOG00000014212)	Ccnyl1 (ENSRNOG00000023807)	Fzd5 (ENSRNOG00000014678)	Plekhm3 (ENSRNOG00000023760)	Cryga (ENSRNOG00000014790)	Crygd (ENSRNOG00000032219)