Euteleostomi	ANCESTRAL SPECIES	802														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22
Sarcopterygii	ANCESTRAL SPECIES	713														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22
Tetrapoda	ANCESTRAL SPECIES	176														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01060000248595.b.a.a	ENSGT00940000156265	ENSGT00940000165068	ENSGT00950000182939.a.b.a	ENSGT00390000003014	ENSGT00940000160461	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000162777	ENSGT00940000156551	ENSGT00940000160284
Amniota	ANCESTRAL SPECIES	174														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22
Mammalia	ANCESTRAL SPECIES	53	ENSGT00390000004323.a	ENSGT00390000009250	ENSGT00940000161995	ENSGT00940000163480	ENSGT00390000009978	ENSGT01060000248595.b.a.a	ENSGT00950000182939.a.b.a	ENSGT00940000160461	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000162777	ENSGT00940000156551	ENSGT00940000160284	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22
Theria	ANCESTRAL SPECIES	40												ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00950000183058.A.b #17	ENSGT00940000161500 #16	ENSGT00940000157596 #15	ENSGT00940000155717 #14	ENSGT00390000011053 #12	ENSGT00640000091497.a #11	ENSGT01050000244950.a.a.a #9	ENSGT00940000158837	ENSGT00940000154578.A.d #8	ENSGT00940000154311.a.b	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712	ENSGT00940000156797
Eutheria	ANCESTRAL SPECIES	5	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Glires	ANCESTRAL SPECIES	2	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Hystricomorpha	ANCESTRAL SPECIES	18	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000001892 #7	DTX3L (ENSHGLG00000001868) #8	ENSHGLG00000001733 #9	WDR5B (ENSHGLG00000047370) #10	FAM162A (ENSHGLG00000048091) #11	CCDC58 (ENSHGLG00000040686) #12	ENSHGLG00000045666 #13	CSTA (ENSHGLG00000050326) #14	CASR (ENSHGLG00000001536) #15	CD86 (ENSHGLG00000001437) #16	ILDR1 (ENSHGLG00000001288) #17	SLC15A2 (ENSHGLG00000001129) #18	EAF2 (ENSHGLG00000019361) #19	IQCB1 (ENSHGLG00000019300) #20	GOLGB1 (ENSHGLG00000014378) #21	HCLS1 (ENSHGLG00000019092) #22	FBXO40 (ENSHGLG00000010736) #23	ENSHGLG00000012935 #24	ENSHGLG00000043147 #25	STXBP5L (ENSHGLG00000016821) #26	ENSHGLG00000011218 #27	ENSHGLG00000048017 #28	ENSHGLG00000049436 #29	GTF2E1 (ENSHGLG00000014027) #30	RABL3 (ENSHGLG00000014491) #31	HGD (ENSHGLG00000011483) #32	ENSHGLG00000021124 #33	ENSHGLG00000039134 #34	ENSHGLG00000046072 #35	FSTL1 (ENSHGLG00000042537) #36	ENSHGLG00000016072 #37
Hystricomorpha_a	ANCESTRAL SPECIES	36	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.l.b #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Guinea pig	MODERN SPECIES	35							ENSCPOG00000026689	ENSCPOG00000033142 #14	CASR (ENSCPOG00000013000) #15	CD86 (ENSCPOG00000020973) #16	ILDR1 (ENSCPOG00000013173) #17	SLC15A2 (ENSCPOG00000006934) #18	EAF2 (ENSCPOG00000006427) #19	IQCB1 (ENSCPOG00000006419) #20	GOLGB1 (ENSCPOG00000006405) #21	HCLS1 (ENSCPOG00000006399) #22	FBXO40 (ENSCPOG00000013228) #23	ENSCPOG00000026454	STXBP5L (ENSCPOG00000008283) #26	GTF2E1 (ENSCPOG00000009651) #30	ENSCPOG00000022678	RABL3 (ENSCPOG00000009645) #31	HGD (ENSCPOG00000022275) #32	NDUFB4 (ENSCPOG00000035194) #35	FSTL1 (ENSCPOG00000033880) #36	ENSCPOG00000040381 #37	LRRC58 (ENSCPOG00000007047)	GPR156 (ENSCPOG00000020772)	GSK3B (ENSCPOG00000014311)	NR1I2 (ENSCPOG00000020161)	CFAP91 (ENSCPOG00000015496)
Hystricomorpha_b	ANCESTRAL SPECIES	32	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.l.b #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Long-tailed chinchilla	MODERN SPECIES	134	KPNA1 (ENSCLAG00000010516) #9	WDR5B (ENSCLAG00000017883) #10	FAM162A (ENSCLAG00000013224) #11	MIX23 (ENSCLAG00000011614) #12	CSTA (ENSCLAG00000012262) #14	ENSCLAG00000010972	CASR (ENSCLAG00000014611) #15	CD86 (ENSCLAG00000011396) #16	ILDR1 (ENSCLAG00000010123) #17	SLC15A2 (ENSCLAG00000014172) #18	ENSCLAG00000016737	ENSCLAG00000014988	EAF2 (ENSCLAG00000014487) #19	IQCB1 (ENSCLAG00000014748) #20	GOLGB1 (ENSCLAG00000011762) #21	HCLS1 (ENSCLAG00000013865) #22	FBXO40 (ENSCLAG00000012408) #23	POLQ (ENSCLAG00000008388) #24	STXBP5L (ENSCLAG00000008959) #26	GTF2E1 (ENSCLAG00000013201) #30	RABL3 (ENSCLAG00000010855) #31	HGD (ENSCLAG00000009244) #32	NDUFB4 (ENSCLAG00000015299) #35	FSTL1 (ENSCLAG00000009617) #36	ENSCLAG00000013373 #37	LRRC58 (ENSCLAG00000013874)	GPR156 (ENSCLAG00000011487)	GSK3B (ENSCLAG00000010847)	NR1I2 (ENSCLAG00000012141)	CFAP91 (ENSCLAG00000012737)	COX17 (ENSCLAG00000009645)
Degu	MODERN SPECIES	188	DTX3L (ENSODEG00000008507) #8	PARP9 (ENSODEG00000010249)	KPNA1 (ENSODEG00000008059) #9	ENSODEG00000019490	WDR5B (ENSODEG00000019471) #10	FAM162A (ENSODEG00000008867) #11	ENSODEG00000008197 #12	CSTA (ENSODEG00000007909) #14	CASR (ENSODEG00000009812) #15	ENSODEG00000019503	ILDR1 (ENSODEG00000007516) #17	SLC15A2 (ENSODEG00000010727) #18	EAF2 (ENSODEG00000007603) #19	IQCB1 (ENSODEG00000007907) #20	GOLGB1 (ENSODEG00000007972) #21	HCLS1 (ENSODEG00000009049) #22	ENSODEG00000008646	FBXO40 (ENSODEG00000008932) #23	POLQ (ENSODEG00000007851) #24	STXBP5L (ENSODEG00000007458) #26
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00940000164942	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b
Marmotini	ANCESTRAL SPECIES	13	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00940000164942	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b
Marmotini_b	ANCESTRAL SPECIES	36	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00940000164942	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696.`b #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b
Arctic ground squirrel	MODERN SPECIES	5	ENSUPAG00010020572	ENSUPAG00010020569	ENSUPAG00010020563 #9	WDR5B (ENSUPAG00010020556) #10	FAM162A (ENSUPAG00010020548) #11	MIX23 (ENSUPAG00010020528) #12	CSTA (ENSUPAG00010020512) #14	CASR (ENSUPAG00010020494) #15	ENSUPAG00010020488 #16	ILDR1 (ENSUPAG00010020459) #17	SLC15A2 (ENSUPAG00010020373) #18	ENSUPAG00010020361	EAF2 (ENSUPAG00010020354) #19	IQCB1 (ENSUPAG00010020333) #20	GOLGB1 (ENSUPAG00010020323) #21	HCLS1 (ENSUPAG00010020307) #22	FBXO40 (ENSUPAG00010020299) #23	POLQ (ENSUPAG00010020281) #24	STXBP5L (ENSUPAG00010020087) #26	ENSUPAG00010020082 #30	RABL3 (ENSUPAG00010020073) #31	HGD (ENSUPAG00010020051) #32	NDUFB4 (ENSUPAG00010020045) #35	FSTL1 (ENSUPAG00010020040) #36	LRRC58 (ENSUPAG00010020027)	GPR156 (ENSUPAG00010020021)	GSK3B (ENSUPAG00010020003)	NR1I2 (ENSUPAG00010019993)	CFAP91 (ENSUPAG00010019983)	POPDC2 (ENSUPAG00010019975)	PLA1A (ENSUPAG00010019964)
Squirrel	MODERN SPECIES	136	PARP14 (ENSSTOG00000019423)	DTX3L (ENSSTOG00000013445) #8	PARP9 (ENSSTOG00000013438)	KPNA1 (ENSSTOG00000026751) #9	WDR5B (ENSSTOG00000027025) #10	FAM162A (ENSSTOG00000004432) #11	MIX23 (ENSSTOG00000004419) #12	CSTA (ENSSTOG00000028515) #14	CASR (ENSSTOG00000004400) #15	ENSSTOG00000002652 #16	ILDR1 (ENSSTOG00000010082) #17	SLC15A2 (ENSSTOG00000010060) #18	EAF2 (ENSSTOG00000019911) #19	IQCB1 (ENSSTOG00000010040) #20	GOLGB1 (ENSSTOG00000010027) #21	HCLS1 (ENSSTOG00000010016) #22	FBXO40 (ENSSTOG00000021524) #23	POLQ (ENSSTOG00000009954) #24	STXBP5L (ENSSTOG00000009925) #26	GTF2E1 (ENSSTOG00000015735) #30	RABL3 (ENSSTOG00000019452) #31	HGD (ENSSTOG00000015729) #32	ENSSTOG00000020092 #35	FSTL1 (ENSSTOG00000001471) #36	LRRC58 (ENSSTOG00000022670)	GPR156 (ENSSTOG00000026101)	GSK3B (ENSSTOG00000014997)	NR1I2 (ENSSTOG00000014988)	CFAP91 (ENSSTOG00000014975)	COX17 (ENSSTOG00000032615)	POPDC2 (ENSSTOG00000023809)
Alpin marmot	MODERN SPECIES	19	DTX3L (ENSMMMG00000013433) #8	PARP9 (ENSMMMG00000013448)	KPNA1 (ENSMMMG00000013462) #9	WDR5B (ENSMMMG00000013487) #10	ENSMMMG00000013490 #11	MIX23 (ENSMMMG00000013503) #12	CSTA (ENSMMMG00000013578) #14	CASR (ENSMMMG00000013617) #15	CD86 (ENSMMMG00000013662) #16	ILDR1 (ENSMMMG00000013668) #17	SLC15A2 (ENSMMMG00000013727) #18	ENSMMMG00000013888	ENSMMMG00000013892	IQCB1 (ENSMMMG00000013895) #20	GOLGB1 (ENSMMMG00000013920) #21	HCLS1 (ENSMMMG00000013942) #22	FBXO40 (ENSMMMG00000013972) #23	POLQ (ENSMMMG00000013983) #24	STXBP5L (ENSMMMG00000014091) #26	GTF2E1 (ENSMMMG00000014676) #30	RABL3 (ENSMMMG00000014685) #31	HGD (ENSMMMG00000014696) #32	NDUFB4 (ENSMMMG00000014710) #35	FSTL1 (ENSMMMG00000014715) #36	ENSMMMG00000014738	WWTR1 (ENSMMMG00000014742)	ENSMMMG00000014753	COMMD2 (ENSMMMG00000014762)	ANKUB1 (ENSMMMG00000014769)	ENSMMMG00000014779	ENSMMMG00000014788
Eurasian red squirrel	MODERN SPECIES	1	PARP9 (ENSSVLG00005006786)	KPNA1 (ENSSVLG00005006713) #9	WDR5B (ENSSVLG00005006686) #10	ENSSVLG00005006652	FAM162A (ENSSVLG00005006569) #11	MIX23 (ENSSVLG00005006490) #12	CSTA (ENSSVLG00005006443) #14	CASR (ENSSVLG00005006344) #15	CD86 (ENSSVLG00005006311) #16	ILDR1 (ENSSVLG00005006124) #17	SLC15A2 (ENSSVLG00005005862) #18	ENSSVLG00005005791	EAF2 (ENSSVLG00005005767) #19	IQCB1 (ENSSVLG00005005618) #20	GOLGB1 (ENSSVLG00005005470) #21	HCLS1 (ENSSVLG00005005312) #22	FBXO40 (ENSSVLG00005005263) #23	ENSSVLG00005005253	ENSSVLG00005005232	POLQ (ENSSVLG00005005121) #24	STXBP5L (ENSSVLG00005004686) #26	ENSSVLG00005004540 #30	RABL3 (ENSSVLG00005014450) #31	HGD (ENSSVLG00005014290) #32	NDUFB4 (ENSSVLG00005014222) #35	FSTL1 (ENSSVLG00005013992) #36	LRRC58 (ENSSVLG00005013737)	GPR156 (ENSSVLG00005013678)	ENSSVLG00005013550	GSK3B (ENSSVLG00005013429)	NR1I2 (ENSSVLG00005013118)
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Kangaroo rat	MODERN SPECIES	364	Hspbap1 (ENSDORG00000001682)	Parp14 (ENSDORG00000000690)	Dtx3l (ENSDORG00000003173) #8	Parp9 (ENSDORG00000003171)	Kpna1 (ENSDORG00000003170) #9	Wdr5b (ENSDORG00000003169) #10	Fam162a (ENSDORG00000003168) #11	Ccdc58 (ENSDORG00000003167) #12	ENSDORG00000003164 #14	Casr (ENSDORG00000003162) #15	Ildr1 (ENSDORG00000027522) #17	Slc15a2 (ENSDORG00000001116) #18	Eaf2 (ENSDORG00000001115) #19	Iqcb1 (ENSDORG00000001113) #20	Golgb1 (ENSDORG00000002423) #21	Hcls1 (ENSDORG00000002422) #22	Fbxo40 (ENSDORG00000002421) #23	Polq (ENSDORG00000002416) #24	Stxbp5l (ENSDORG00000007287) #26	Gtf2e1 (ENSDORG00000007285) #30	ENSDORG00000007284	Hgd (ENSDORG00000014504) #32	Ndufb4 (ENSDORG00000014502) #35	Fstl1 (ENSDORG00000002235) #36	Btnl12 (ENSDORG00000029670) #37	Lrrc58 (ENSDORG00000008401)	Gpr156 (ENSDORG00000006062)	Gsk3b (ENSDORG00000023434)	Nr1i2 (ENSDORG00000003966)	Cfap91 (ENSDORG00000011559)	Popdc2 (ENSDORG00000009735)
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Lesser Egyptian jerboa	MODERN SPECIES	137		Dtx3l (ENSJJAG00000023333) #8	Parp9 (ENSJJAG00000023676)	Kpna1 (ENSJJAG00000000134) #9	Wdr5b (ENSJJAG00000000297) #10	Fam162a (ENSJJAG00000000903) #11	ENSJJAG00000003637 #12	ENSJJAG00000005528 #14	Casr (ENSJJAG00000009683) #15	ENSJJAG00000010789 #16	Ildr1 (ENSJJAG00000011606) #17	Slc15a2 (ENSJJAG00000013093) #18	ENSJJAG00000014936	Iqcb1 (ENSJJAG00000015154) #20	Golgb1 (ENSJJAG00000016394) #21	Hcls1 (ENSJJAG00000015789) #22	Fbxo40 (ENSJJAG00000016012) #23	Stxbp5l (ENSJJAG00000019547) #26	Gtf2e1 (ENSJJAG00000023373) #30	Rabl3 (ENSJJAG00000023553) #31	Hgd (ENSJJAG00000000068) #32	Ndufb4 (ENSJJAG00000000112) #35	Fstl1 (ENSJJAG00000000598) #36	Btnl12 (ENSJJAG00000003184) #37	Lrrc58 (ENSJJAG00000005130)	Gpr156 (ENSJJAG00000007798)	Gsk3b (ENSJJAG00000010506)	Nr1i2 (ENSJJAG00000011379)	Cfap91 (ENSJJAG00000012537)	Cox17 (ENSJJAG00000012774)	Popdc2 (ENSJJAG00000013185)
Muroidea	ANCESTRAL SPECIES	11	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Upper Galilee mountains blind mole rat	MODERN SPECIES	1215	Parp14 (ENSNGAG00000024058)	Dtx3l (ENSNGAG00000024127) #8	Parp9 (ENSNGAG00000013531)	Kpna1 (ENSNGAG00000019753) #9	Wdr5b (ENSNGAG00000013754) #10	Fam162a (ENSNGAG00000024111) #11	Ccdc58 (ENSNGAG00000021453) #12	ENSNGAG00000000990 #14	Casr (ENSNGAG00000015593) #15	ENSNGAG00000012890 #16	Ildr1 (ENSNGAG00000013791) #17	Slc15a2 (ENSNGAG00000020032) #18	Eaf2 (ENSNGAG00000018733) #19	Iqcb1 (ENSNGAG00000024265) #20	Golgb1 (ENSNGAG00000020167) #21	Hcls1 (ENSNGAG00000022704) #22	Fbxo40 (ENSNGAG00000004209) #23	Polq (ENSNGAG00000024216) #24	Stxbp5l (ENSNGAG00000015316) #26	Gtf2e1 (ENSNGAG00000018181) #30	Rabl3 (ENSNGAG00000001939) #31	Hgd (ENSNGAG00000021388) #32	Ndufb4 (ENSNGAG00000019446) #35	Fstl1 (ENSNGAG00000009480) #36	Btnl12 (ENSNGAG00000023554) #37	Lrrc58 (ENSNGAG00000023258)	Gpr156 (ENSNGAG00000010795)	Gsk3b (ENSNGAG00000002108)	Nr1i2 (ENSNGAG00000023122)	Cfap91 (ENSNGAG00000022679)	Cox17 (ENSNGAG00000024232)
Muroidea_A	ANCESTRAL SPECIES	17	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133.g.b #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Murinae	ANCESTRAL SPECIES	13	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717.i.a #14	ENSGT00940000155717.i.b.a.a.b.b #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133.g.b #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Mus	ANCESTRAL SPECIES	13	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717.i.a #14	ENSGT00940000155717.i.b.a.a.b.b #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133.g.b #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Mus_A	ANCESTRAL SPECIES	18	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717.i.a #14	ENSGT00940000155717.i.b.a.a.b.b #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696.x #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133.g.b #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Mus_B	ANCESTRAL SPECIES	18	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717.i.a #14	ENSGT00940000155717.i.b.a.a.b.a #14	ENSGT00940000155717.i.b.a.a.b.b #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696.x #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133.g.b #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Mus_C	ANCESTRAL SPECIES	12	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717.i.a #14	ENSGT00940000155717.i.b.a.a.b.a #14	ENSGT00940000155717.i.b.a.a.b.b #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696.x #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133.h #35	ENSGT00390000007133.g.b #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118
Steppe mouse	MODERN SPECIES	19							Casr (ENSMSIG00000016850) #15	ENSMSIG00000016961	ENSMSIG00000016968	Cd86 (ENSMSIG00000016983) #16	Ildr1 (ENSMSIG00000017015) #17	Slc15a2 (ENSMSIG00000017096) #18	Eaf2 (ENSMSIG00000017229) #19	Iqcb1 (ENSMSIG00000017244) #20	Golgb1 (ENSMSIG00000017297) #21	Hcls1 (ENSMSIG00000017414) #22	Fbxo40 (ENSMSIG00000017504) #23	Polq (ENSMSIG00000017530) #24	ENSMSIG00000017745	Stxbp5l (ENSMSIG00000017754) #26	ENSMSIG00000018266	Gtf2e1 (ENSMSIG00000018274) #30	Rabl3 (ENSMSIG00000018289) #31	ENSMSIG00000018320	Hgd (ENSMSIG00000018328) #32	ENSMSIG00000018377 #35	ENSMSIG00000018386	Fstl1 (ENSMSIG00000018393) #36	Btnl12 (ENSMSIG00000018429) #37	Lrrc58 (ENSMSIG00000018454)	Gpr156 (ENSMSIG00000018477)
spretus	MODERN SPECIES	7	Kpna1 (MGP_SPRETEiJ_G0021607) #9	Wdr5b (MGP_SPRETEiJ_G0021608) #10	Fam162a (MGP_SPRETEiJ_G0021609) #11	Ccdc58 (MGP_SPRETEiJ_G0021610) #12	MGP_SPRETEiJ_G0021611 #14	MGP_SPRETEiJ_G0021612 #14	MGP_SPRETEiJ_G0021613 #14	Stfa3 (MGP_SPRETEiJ_G0021615) #14	Casr (MGP_SPRETEiJ_G0021616) #15	Cd86 (MGP_SPRETEiJ_G0021617) #16	Ildr1 (MGP_SPRETEiJ_G0021618) #17	Slc15a2 (MGP_SPRETEiJ_G0021619) #18	Eaf2 (MGP_SPRETEiJ_G0021620) #19	Iqcb1 (MGP_SPRETEiJ_G0021621) #20	Golgb1 (MGP_SPRETEiJ_G0021622) #21	Hcls1 (MGP_SPRETEiJ_G0021623) #22	Fbxo40 (MGP_SPRETEiJ_G0021624) #23	Polq (MGP_SPRETEiJ_G0021625) #24	Stxbp5l (MGP_SPRETEiJ_G0021626) #26	Gtf2e1 (MGP_SPRETEiJ_G0021627) #30	Rabl3 (MGP_SPRETEiJ_G0021628) #31	Hgd (MGP_SPRETEiJ_G0021629) #32	Ndufb4 (MGP_SPRETEiJ_G0021630) #35	Fstl1 (MGP_SPRETEiJ_G0021631) #36	Btnl12 (MGP_SPRETEiJ_G0021632) #37	Lrrc58 (MGP_SPRETEiJ_G0021633)	Gpr156 (MGP_SPRETEiJ_G0021634)	Gsk3b (MGP_SPRETEiJ_G0021635)	Nr1i2 (MGP_SPRETEiJ_G0021636)	Cfap91 (MGP_SPRETEiJ_G0021637)	MGP_SPRETEiJ_G0021638
Mouse	MODERN SPECIES	7	Cstdc4 (ENSMUSG00000079597) #14	Csta3 (ENSMUSG00000094733) #14	Csta2 (ENSMUSG00000095620) #14	Stfa1 (ENSMUSG00000071562) #14	Cstdc6 (ENSMUSG00000079594) #14	Cstdc5 (ENSMUSG00000071561) #14	Stfa2 (ENSMUSG00000022902) #14	Stfa3 (ENSMUSG00000054905) #14	Casr (ENSMUSG00000051980) #15	Cd86 (ENSMUSG00000022901) #16	Ildr1 (ENSMUSG00000022900) #17	Slc15a2 (ENSMUSG00000022899) #18	Eaf2 (ENSMUSG00000022838) #19	Iqcb1 (ENSMUSG00000022837) #20	Golgb1 (ENSMUSG00000034243) #21	Hcls1 (ENSMUSG00000022831) #22	Fbxo40 (ENSMUSG00000047746) #23	Polq (ENSMUSG00000034206) #24	Stxbp5l (ENSMUSG00000022829) #26	Gtf2e1 (ENSMUSG00000022828) #30	Rabl3 (ENSMUSG00000022827) #31	Hgd (ENSMUSG00000022821) #32	Ndufb4 (ENSMUSG00000022820) #35	Fstl1 (ENSMUSG00000022816) #36	Btnl12 (ENSMUSG00000108763) #37	Lrrc58 (ENSMUSG00000034158)	Gpr156 (ENSMUSG00000046961)	Gsk3b (ENSMUSG00000022812)	Nr1i2 (ENSMUSG00000022809)	Cfap91 (ENSMUSG00000022805)	Cox17 (ENSMUSG00000046516)
Ryukyu mouse	MODERN SPECIES	7	Parp9 (MGP_CAROLIEiJ_G0020708)	Kpna1 (MGP_CAROLIEiJ_G0020709) #9	Wdr5b (MGP_CAROLIEiJ_G0020710) #10	Fam162a (MGP_CAROLIEiJ_G0020711) #11	Ccdc58 (MGP_CAROLIEiJ_G0020712) #12	MGP_CAROLIEiJ_G0020713 #14	MGP_CAROLIEiJ_G0020714	Stfa3 (MGP_CAROLIEiJ_G0020715) #14	Casr (MGP_CAROLIEiJ_G0020716) #15	Cd86 (MGP_CAROLIEiJ_G0020717) #16	Ildr1 (MGP_CAROLIEiJ_G0020718) #17	Slc15a2 (MGP_CAROLIEiJ_G0020719) #18	Eaf2 (MGP_CAROLIEiJ_G0020720) #19	Iqcb1 (MGP_CAROLIEiJ_G0020721) #20	Golgb1 (MGP_CAROLIEiJ_G0020722) #21	Hcls1 (MGP_CAROLIEiJ_G0020723) #22	Fbxo40 (MGP_CAROLIEiJ_G0020724) #23	Polq (MGP_CAROLIEiJ_G0020725) #24	MGP_CAROLIEiJ_G0020726 #26	MGP_CAROLIEiJ_G0020727 #30	Rabl3 (MGP_CAROLIEiJ_G0020728) #31	Hgd (MGP_CAROLIEiJ_G0020729) #32	Ndufb4 (MGP_CAROLIEiJ_G0020730) #35	Fstl1 (MGP_CAROLIEiJ_G0020731) #36	Btnl12 (MGP_CAROLIEiJ_G0020732) #37	MGP_CAROLIEiJ_G0020733	MGP_CAROLIEiJ_G0020734	Gpr156 (MGP_CAROLIEiJ_G0020735)	Gsk3b (MGP_CAROLIEiJ_G0020736)	Nr1i2 (MGP_CAROLIEiJ_G0020737)	Cfap91 (MGP_CAROLIEiJ_G0020738)
Shrew mouse	MODERN SPECIES	3	Parp14 (MGP_PahariEiJ_G0016409)	Dtx3l (MGP_PahariEiJ_G0016410) #8	MGP_PahariEiJ_G0016411	Kpna1 (MGP_PahariEiJ_G0016412) #9	Wdr5b (MGP_PahariEiJ_G0016413) #10	Fam162a (MGP_PahariEiJ_G0016414) #11	Ccdc58 (MGP_PahariEiJ_G0016415) #12	MGP_PahariEiJ_G0016416	Casr (MGP_PahariEiJ_G0016417) #15	Cd86 (MGP_PahariEiJ_G0016418) #16	Ildr1 (MGP_PahariEiJ_G0016419) #17	Slc15a2 (MGP_PahariEiJ_G0016420) #18	Eaf2 (MGP_PahariEiJ_G0016421) #19	Iqcb1 (MGP_PahariEiJ_G0016422) #20	Golgb1 (MGP_PahariEiJ_G0016423) #21	Hcls1 (MGP_PahariEiJ_G0016424) #22	Fbxo40 (MGP_PahariEiJ_G0016425) #23	Polq (MGP_PahariEiJ_G0016426) #24	Stxbp5l (MGP_PahariEiJ_G0016427) #26	Gtf2e1 (MGP_PahariEiJ_G0016428) #30	Rabl3 (MGP_PahariEiJ_G0016429) #31	Hgd (MGP_PahariEiJ_G0016430) #32	Ndufb4 (MGP_PahariEiJ_G0016431) #35	Fstl1 (MGP_PahariEiJ_G0016432) #36	Btnl12 (MGP_PahariEiJ_G0016433) #37	Lrrc58 (MGP_PahariEiJ_G0016434)	Gpr156 (MGP_PahariEiJ_G0016435)	Gsk3b (MGP_PahariEiJ_G0016436)	Nr1i2 (MGP_PahariEiJ_G0016437)	Cfap91 (MGP_PahariEiJ_G0016438)	MGP_PahariEiJ_G0016439
Rat	MODERN SPECIES	2	Stfa2 (ENSRNOG00000064199) #14	LOC120095659 (ENSRNOG00000068561) #14	Stfa2l2 (ENSRNOG00000063669) #14	Cstdc4 (ENSRNOG00000063692)	Stfa2l1 (ENSRNOG00000033929) #14	ENSRNOG00000066258 #14	LOC689230 (ENSRNOG00000068554) #14	Stfa3 (ENSRNOG00000033933) #14	Casr (ENSRNOG00000002265) #15	Cd86 (ENSRNOG00000038835) #16	Slc15a2 (ENSRNOG00000002305) #18	Ildr1 (ENSRNOG00000002289) #17	Eaf2 (ENSRNOG00000002350) #19	Iqcb1 (ENSRNOG00000038868) #20	Golgb1 (ENSRNOG00000030314) #21	Hcls1 (ENSRNOG00000038881) #22	Fbxo40 (ENSRNOG00000002459) #23	Gng10-ps1 (ENSRNOG00000070865)	Polq (ENSRNOG00000002471) #24	Stxbp5l (ENSRNOG00000002496) #26	ENSRNOG00000068521	Gtf2e1 (ENSRNOG00000026008) #30	Rabl3 (ENSRNOG00000026085) #31	Hgd (ENSRNOG00000002701) #32	Ndufb4 (ENSRNOG00000002721) #35	LOC102552404 (ENSRNOG00000068993) #37	Lrrc58 (ENSRNOG00000027151)	ENSRNOG00000064655	Fstl1 (ENSRNOG00000002746) #36	Gpr156 (ENSRNOG00000002797)	Gsk3b (ENSRNOG00000002833)
Cricetidae	ANCESTRAL SPECIES	16	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a.h #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.h #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Cricetinae	ANCESTRAL SPECIES	10	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a.h #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.h #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Chinese hamster chok1gshd	MODERN SPECIES	382	Parp14 (ENSCGRG00001006699)	ENSCGRG00001019002 #8	Parp9 (ENSCGRG00001020003)	Kpna1 (ENSCGRG00001022843) #9	ENSCGRG00001004715 #8	ENSCGRG00001002066 #11	Ccdc58 (ENSCGRG00001007596) #12	ENSCGRG00001013254 #14	Casr (ENSCGRG00001016487) #15	Cd86 (ENSCGRG00001021687) #16	Ildr1 (ENSCGRG00001002658) #17	Slc15a2 (ENSCGRG00001019056) #18	Eaf2 (ENSCGRG00001001162) #19	Iqcb1 (ENSCGRG00001004386) #20	Golgb1 (ENSCGRG00001012572) #21	Hcls1 (ENSCGRG00001024176) #22	Fbxo40 (ENSCGRG00001023973) #23	Polq (ENSCGRG00001013184) #24	Stxbp5l (ENSCGRG00001011397) #26	Gtf2e1 (ENSCGRG00001013030) #30	Rabl3 (ENSCGRG00001021537) #31	Hgd (ENSCGRG00001019124) #32	ENSCGRG00001016366 #35	Fstl1 (ENSCGRG00001019352) #36	Btnl12 (ENSCGRG00001009585) #37	Lrrc58 (ENSCGRG00001011907)	Gpr156 (ENSCGRG00001018982)	ENSCGRG00001024473	Gsk3b (ENSCGRG00001011596)	Nr1i2 (ENSCGRG00001015366)	Cfap91 (ENSCGRG00001012643)
Golden Hamster	MODERN SPECIES	645	ENSMAUG00000021258	Dtx3l (ENSMAUG00000017541) #8	Parp9 (ENSMAUG00000002664)	ENSMAUG00000020889 #9	Wdr5b (ENSMAUG00000007468) #10	Fam162a (ENSMAUG00000022254) #11	Ccdc58 (ENSMAUG00000020065) #12	ENSMAUG00000011953 #14	Casr (ENSMAUG00000007398) #15	Cd86 (ENSMAUG00000019431) #16	Ildr1 (ENSMAUG00000003496) #17	ENSMAUG00000017415 #18	Eaf2 (ENSMAUG00000019901) #19	Iqcb1 (ENSMAUG00000005080) #20	Golgb1 (ENSMAUG00000015772) #21	ENSMAUG00000014613 #22	ENSMAUG00000015080 #24	Stxbp5l (ENSMAUG00000001984) #26	Gtf2e1 (ENSMAUG00000020149) #30	Rabl3 (ENSMAUG00000013022) #31	Hgd (ENSMAUG00000016960) #32	Ndufb4 (ENSMAUG00000013448) #35	Fstl1 (ENSMAUG00000002118) #36	Btnl12 (ENSMAUG00000010510) #37	Lrrc58 (ENSMAUG00000014544)	Gpr156 (ENSMAUG00000014863)	Gsk3b (ENSMAUG00000015683)	Nr1i2 (ENSMAUG00000011479)	Cfap91 (ENSMAUG00000008338)	Cox17 (ENSMAUG00000020841)	ENSMAUG00000020930
Cricetidae_B	ANCESTRAL SPECIES	13	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a.h #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.h #35	ENSGT00390000007133.g.b #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Northern American deer mouse	MODERN SPECIES	3	Parp14 (ENSPEMG00000008286)	Dtx3l (ENSPEMG00000009226) #8	Parp9 (ENSPEMG00000010239)	Kpna1 (ENSPEMG00000018248) #9	Wdr5b (ENSPEMG00000004447) #10	ENSPEMG00000005712 #11	Ccdc58 (ENSPEMG00000017093) #12	ENSPEMG00000003391 #14	Casr (ENSPEMG00000008816) #15	Cd86 (ENSPEMG00000001872) #16	Ildr1 (ENSPEMG00000001729) #17	Slc15a2 (ENSPEMG00000018398) #18	Eaf2 (ENSPEMG00000023833) #19	Iqcb1 (ENSPEMG00000007062) #20	Golgb1 (ENSPEMG00000023907) #21	Hcls1 (ENSPEMG00000000520) #22	Fbxo40 (ENSPEMG00000010564) #23	Polq (ENSPEMG00000017429) #24	Stxbp5l (ENSPEMG00000004327) #26	Gtf2e1 (ENSPEMG00000017575) #30	Rabl3 (ENSPEMG00000016913) #31	Hgd (ENSPEMG00000011187) #32	ENSPEMG00000017143 #35	Fstl1 (ENSPEMG00000001577) #36	Btnl12 (ENSPEMG00000018750) #37	ENSPEMG00000025730	Gpr156 (ENSPEMG00000010041)	Gsk3b (ENSPEMG00000013248)	Nr1i2 (ENSPEMG00000011080)	Cfap91 (ENSPEMG00000012934)	Cox17 (ENSPEMG00000021484)
Prairie vole	MODERN SPECIES	7	Col8a1 (ENSMOCG00000012701)	Cmss1 (ENSMOCG00000021937)	Filip1l (ENSMOCG00000007107)	ENSMOCG00000013599	Tmem30c (ENSMOCG00000015756)	ENSMOCG00000001124	Tbc1d23 (ENSMOCG00000016619)	Nit2 (ENSMOCG00000018553)	Tomm70a (ENSMOCG00000021240)	ENSMOCG00000021737	Lnp1 (ENSMOCG00000013183)	ENSMOCG00000009243	Tmem45a (ENSMOCG00000010510)	Adgrg7 (ENSMOCG00000021146)	ENSMOCG00000013742	ENSMOCG00000022104 #22	Fbxo40 (ENSMOCG00000008639) #23	Polq (ENSMOCG00000016969) #24	Stxbp5l (ENSMOCG00000000855) #26	ENSMOCG00000020694 #30	Rabl3 (ENSMOCG00000015237) #31	Hgd (ENSMOCG00000002971) #32	Ndufb4 (ENSMOCG00000017175) #35	Fstl1 (ENSMOCG00000019386) #36	Btnl12 (ENSMOCG00000013857) #37	Lrrc58 (ENSMOCG00000021625)	Gpr156 (ENSMOCG00000011836)	Gsk3b (ENSMOCG00000003748)	Nr1i2 (ENSMOCG00000010007)	Cfap91 (ENSMOCG00000022057)	ENSMOCG00000015088
Lagomorpha	ANCESTRAL SPECIES	9	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Rabbit	MODERN SPECIES	5	KPNA1 (ENSOCUG00000002694) #9	WDR5B (ENSOCUG00000030198) #10	FAM162A (ENSOCUG00000002686) #11	ENSOCUG00000021647	MIX23 (ENSOCUG00000002682) #12	ENSOCUG00000027176	CSTA (ENSOCUG00000029025) #14	CASR (ENSOCUG00000005085) #15	CD86 (ENSOCUG00000011550) #16	ILDR1 (ENSOCUG00000011541) #17	SLC15A2 (ENSOCUG00000001853) #18	EAF2 (ENSOCUG00000007081) #19	ENSOCUG00000005913	IQCB1 (ENSOCUG00000009145) #20	GOLGB1 (ENSOCUG00000012457) #21	HCLS1 (ENSOCUG00000012449) #22	FBXO40 (ENSOCUG00000012444) #23	POLQ (ENSOCUG00000008077) #24	STXBP5L (ENSOCUG00000005835) #26	GTF2E1 (ENSOCUG00000002784) #30	HGD (ENSOCUG00000009008) #32	ENSOCUG00000029140 #35	ENSOCUG00000012731	FSTL1 (ENSOCUG00000005247) #36	ENSOCUG00000029307 #37	LRRC58 (ENSOCUG00000025190)	ENSOCUG00000026225	GPR156 (ENSOCUG00000006705)	GSK3B (ENSOCUG00000014932)	NR1I2 (ENSOCUG00000006125)	CFAP91 (ENSOCUG00000009467)
Pika	MODERN SPECIES	4230													EAF2 (ENSOPRG00000006122) #19	IQCB1 (ENSOPRG00000006109) #20	GOLGB1 (ENSOPRG00000006091) #21	HCLS1 (ENSOPRG00000006078) #22	POLQ (ENSOPRG00000006048) #24	ENSOPRG00000006016 #26
Tree shrew	MODERN SPECIES	5562										CD86 (ENSTBEG00000011199) #16	ILDR1 (ENSTBEG00000010625) #17	SLC15A2 (ENSTBEG00000009693) #18	EAF2 (ENSTBEG00000017542) #19	IQCB1 (ENSTBEG00000017231) #20	GOLGB1 (ENSTBEG00000016367) #21	HCLS1 (ENSTBEG00000015923) #22	FBXO40 (ENSTBEG00000015825) #23	ARGFX (ENSTBEG00000015401)
Primates	ANCESTRAL SPECIES	1	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Haplorrhini	ANCESTRAL SPECIES	22	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.u #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Hominidae	ANCESTRAL SPECIES	2	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.u.b #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00940000166143.A.a.b.a.b.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.u.b #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00940000166143.A.a.b.a.b.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.u.b #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Pan	ANCESTRAL SPECIES	2	ENSGT00940000166143.A.a.b.a.b.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.u.b #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Chimpanzee	MODERN SPECIES	16	ENSPTRG00000050279	DTX3L (ENSPTRG00000015295) #8	PARP9 (ENSPTRG00000015294)	KPNA1 (ENSPTRG00000015293) #9	WDR5B (ENSPTRG00000030152) #10	FAM162A (ENSPTRG00000015292) #11	MIX23 (ENSPTRG00000043778) #12	CSTA (ENSPTRG00000015290) #14	CASR (ENSPTRG00000015289) #15	CD86 (ENSPTRG00000015288) #16	ILDR1 (ENSPTRG00000015285) #17	SLC15A2 (ENSPTRG00000015284) #18	EAF2 (ENSPTRG00000015282) #19	IQCB1 (ENSPTRG00000015281) #20	GOLGB1 (ENSPTRG00000015280) #21	HCLS1 (ENSPTRG00000015279) #22	FBXO40 (ENSPTRG00000015278) #23	ARGFX (ENSPTRG00000015277)	ENSPTRG00000044655	POLQ (ENSPTRG00000015276) #24	STXBP5L (ENSPTRG00000015274) #26	GTF2E1 (ENSPTRG00000015273) #30	RABL3 (ENSPTRG00000015272) #31	HGD (ENSPTRG00000015271) #32	NDUFB4 (ENSPTRG00000015270) #35	FSTL1 (ENSPTRG00000015269) #36	LRRC58 (ENSPTRG00000015268)	GPR156 (ENSPTRG00000015267)	GSK3B (ENSPTRG00000015264)	NR1I2 (ENSPTRG00000015263)	CFAP91 (ENSPTRG00000015262)
Bonobo	MODERN SPECIES	16	ENSPPAG00000014687	DTX3L (ENSPPAG00000025871) #8	PARP9 (ENSPPAG00000043447)	KPNA1 (ENSPPAG00000038484) #9	WDR5B (ENSPPAG00000023737) #10	FAM162A (ENSPPAG00000029084) #11	MIX23 (ENSPPAG00000028374) #12	CSTA (ENSPPAG00000042804) #14	CASR (ENSPPAG00000036287) #15	CD86 (ENSPPAG00000033813) #16	ILDR1 (ENSPPAG00000042213) #17	SLC15A2 (ENSPPAG00000037252) #18	EAF2 (ENSPPAG00000042010) #19	IQCB1 (ENSPPAG00000020920) #20	GOLGB1 (ENSPPAG00000032862) #21	HCLS1 (ENSPPAG00000016859) #22	FBXO40 (ENSPPAG00000043031) #23	ARGFX (ENSPPAG00000029106)	POLQ (ENSPPAG00000027313) #24	STXBP5L (ENSPPAG00000036564) #26	GTF2E1 (ENSPPAG00000030846) #30	RABL3 (ENSPPAG00000036997) #31	HGD (ENSPPAG00000031410) #32	NDUFB4 (ENSPPAG00000027750) #35	FSTL1 (ENSPPAG00000029345) #36	LRRC58 (ENSPPAG00000026667)	GPR156 (ENSPPAG00000026940)	GSK3B (ENSPPAG00000040976)	NR1I2 (ENSPPAG00000028796)	CFAP91 (ENSPPAG00000028499)	ENSPPAG00000039098
Human	MODERN SPECIES	15	PARP15 (ENSG00000173200)	DTX3L (ENSG00000163840) #8	PARP9 (ENSG00000138496)	KPNA1 (ENSG00000114030) #9	WDR5B (ENSG00000196981) #10	FAM162A (ENSG00000114023) #11	MIX23 (ENSG00000160124) #12	CSTA (ENSG00000121552) #14	CASR (ENSG00000036828) #15	CD86 (ENSG00000114013) #16	ILDR1 (ENSG00000145103) #17	SLC15A2 (ENSG00000163406) #18	EAF2 (ENSG00000145088) #19	IQCB1 (ENSG00000173226) #20	GOLGB1 (ENSG00000173230) #21	HCLS1 (ENSG00000180353) #22	FBXO40 (ENSG00000163833) #23	ARGFX (ENSG00000186103)	POLQ (ENSG00000051341) #24	STXBP5L (ENSG00000145087) #26	GTF2E1 (ENSG00000153767) #30	RABL3 (ENSG00000144840) #31	HGD (ENSG00000113924) #32	NDUFB4 (ENSG00000065518) #35	FSTL1 (ENSG00000163430) #36	LRRC58 (ENSG00000163428)	GPR156 (ENSG00000175697)	GSK3B (ENSG00000082701)	NR1I2 (ENSG00000144852)	ENSG00000285585	CFAP91 (ENSG00000183833)
Gorilla	MODERN SPECIES	16	ENSGGOG00000039543	DTX3L (ENSGGOG00000015979) #8	PARP9 (ENSGGOG00000015971)	KPNA1 (ENSGGOG00000015957) #9	WDR5B (ENSGGOG00000003266) #10	FAM162A (ENSGGOG00000022758) #11	MIX23 (ENSGGOG00000001964) #12	CSTA (ENSGGOG00000024959) #14	CASR (ENSGGOG00000002159) #15	CD86 (ENSGGOG00000008578) #16	ILDR1 (ENSGGOG00000002958) #17	SLC15A2 (ENSGGOG00000011601) #18	EAF2 (ENSGGOG00000011594) #19	IQCB1 (ENSGGOG00000028124) #20	GOLGB1 (ENSGGOG00000010257) #21	HCLS1 (ENSGGOG00000016791) #22	FBXO40 (ENSGGOG00000016785) #23	ARGFX (ENSGGOG00000005362)	ENSGGOG00000038094	POLQ (ENSGGOG00000011565) #24	STXBP5L (ENSGGOG00000034916) #26	GTF2E1 (ENSGGOG00000022773) #30	RABL3 (ENSGGOG00000006059) #31	HGD (ENSGGOG00000009039) #32	NDUFB4 (ENSGGOG00000013923) #35	ENSGGOG00000036304	ENSGGOG00000002305 #36	LRRC58 (ENSGGOG00000006581)	GPR156 (ENSGGOG00000005597)	GSK3B (ENSGGOG00000007367)	NR1I2 (ENSGGOG00000007361)
Orangutan	MODERN SPECIES	16	PARP15 (ENSPPYG00000013480)	DTX3L (ENSPPYG00000013481) #8	PARP9 (ENSPPYG00000013482)	KPNA1 (ENSPPYG00000013483) #9	WDR5B (ENSPPYG00000013484) #10	FAM162A (ENSPPYG00000013485) #11	MIX23 (ENSPPYG00000013486) #12	CSTA (ENSPPYG00000013487) #14	CASR (ENSPPYG00000013489) #15	CD86 (ENSPPYG00000013490) #16	ILDR1 (ENSPPYG00000013491) #17	SLC15A2 (ENSPPYG00000013492) #18	EAF2 (ENSPPYG00000013493) #19	IQCB1 (ENSPPYG00000013494) #20	GOLGB1 (ENSPPYG00000029668) #21	HCLS1 (ENSPPYG00000013495) #22	FBXO40 (ENSPPYG00000013496) #23	ARGFX (ENSPPYG00000013497)	POLQ (ENSPPYG00000013498) #24	STXBP5L (ENSPPYG00000013499) #26	GTF2E1 (ENSPPYG00000013500) #30	RABL3 (ENSPPYG00000013501) #31	HGD (ENSPPYG00000013502) #32	NDUFB4 (ENSPPYG00000013503) #35	FSTL1 (ENSPPYG00000013504) #36	LRRC58 (ENSPPYG00000013505)	ENSPPYG00000037160	GPR156 (ENSPPYG00000013506)	GSK3B (ENSPPYG00000013507)	NR1I2 (ENSPPYG00000013508)	CFAP91 (ENSPPYG00000013509)
Gibbon	MODERN SPECIES	13	ENSNLEG00000035299	DTX3L (ENSNLEG00000034825) #8	PARP9 (ENSNLEG00000000303)	KPNA1 (ENSNLEG00000000296) #9	WDR5B (ENSNLEG00000018651) #10	FAM162A (ENSNLEG00000000293) #11	MIX23 (ENSNLEG00000000291) #12	CSTA (ENSNLEG00000000289) #14	CASR (ENSNLEG00000000284) #15	CD86 (ENSNLEG00000000277) #16	ILDR1 (ENSNLEG00000000266) #17	SLC15A2 (ENSNLEG00000000236) #18	EAF2 (ENSNLEG00000000228) #19	IQCB1 (ENSNLEG00000000202) #20	GOLGB1 (ENSNLEG00000000187) #21	HCLS1 (ENSNLEG00000000180) #22	FBXO40 (ENSNLEG00000000176) #23	ARGFX (ENSNLEG00000013255)	ENSNLEG00000015545	ENSNLEG00000032065	ENSNLEG00000011888	ROBO1 (ENSNLEG00000011861)	GBE1 (ENSNLEG00000011827)	ENSNLEG00000029461	CADM2 (ENSNLEG00000033517)	VGLL3 (ENSNLEG00000011790)	ENSNLEG00000028318	CHMP2B (ENSNLEG00000027188)	POU1F1 (ENSNLEG00000011761)	ENSNLEG00000033668	HTR1F (ENSNLEG00000018632)
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00940000153095.g.b.a.a.a.a	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00910000148071	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00940000161696.c.a.c	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a
Rhinopithecus	ANCESTRAL SPECIES	99	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00940000153095.g.b.a.a.a.a	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00910000148071	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00940000161696.c.a.c	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118
Golden snub-nosed monkey	MODERN SPECIES	1514	DTX3L (ENSRROG00000036307) #8	PARP9 (ENSRROG00000044224)	KPNA1 (ENSRROG00000019521) #9	WDR5B (ENSRROG00000013553) #10	FAM162A (ENSRROG00000032837) #11	MIX23 (ENSRROG00000045510) #12	CSTA (ENSRROG00000042404) #14	CASR (ENSRROG00000028094) #15	CD86 (ENSRROG00000028663) #16	ILDR1 (ENSRROG00000041988) #17	SLC15A2 (ENSRROG00000042924) #18	EAF2 (ENSRROG00000030183) #19	IQCB1 (ENSRROG00000036172) #20	ENSRROG00000017055	GOLGB1 (ENSRROG00000032348) #21	HCLS1 (ENSRROG00000042649) #22	FBXO40 (ENSRROG00000002095) #23	ARGFX (ENSRROG00000034121)	POLQ (ENSRROG00000045280) #24
Black snub-nosed monkey	MODERN SPECIES	116								CASR (ENSRBIG00000027082) #15	CD86 (ENSRBIG00000032849) #16	ILDR1 (ENSRBIG00000040069) #17	SLC15A2 (ENSRBIG00000027861) #18	EAF2 (ENSRBIG00000043640) #19	IQCB1 (ENSRBIG00000040113) #20	ENSRBIG00000037400	GOLGB1 (ENSRBIG00000037187) #21	HCLS1 (ENSRBIG00000015356) #22	ENSRBIG00000036098	FBXO40 (ENSRBIG00000040355) #23	ENSRBIG00000038038	POLQ (ENSRBIG00000023391) #24	STXBP5L (ENSRBIG00000040973) #26	ENSRBIG00000043061	GTF2E1 (ENSRBIG00000038747) #30	RABL3 (ENSRBIG00000040941) #31	HGD (ENSRBIG00000041495) #32	NDUFB4 (ENSRBIG00000042955) #35	FSTL1 (ENSRBIG00000035867) #36	LRRC58 (ENSRBIG00000001268)	ENSRBIG00000036153	GPR156 (ENSRBIG00000028090)	GSK3B (ENSRBIG00000036074)
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00940000153095.g.b.a.a.a.a	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00910000148071	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00940000161696.c.a.c	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00910000148071	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00940000161696.c.a.c	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696.s #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Pig-tailed macaque	MODERN SPECIES	453	DTX3L (ENSMNEG00000038749) #8	PARP9 (ENSMNEG00000033549)	KPNA1 (ENSMNEG00000040844) #9	WDR5B (ENSMNEG00000018966) #10	FAM162A (ENSMNEG00000036945) #11	MIX23 (ENSMNEG00000041513) #12	CSTA (ENSMNEG00000035064) #14	ENSMNEG00000038539	CASR (ENSMNEG00000035840) #15	CD86 (ENSMNEG00000031802) #16	ILDR1 (ENSMNEG00000031854) #17	SLC15A2 (ENSMNEG00000033273) #18	EAF2 (ENSMNEG00000036190) #19	IQCB1 (ENSMNEG00000039511) #20	GOLGB1 (ENSMNEG00000043119) #21	HCLS1 (ENSMNEG00000041239) #22	FBXO40 (ENSMNEG00000041676) #23	ENSMNEG00000029929	ARGFX (ENSMNEG00000031585)	POLQ (ENSMNEG00000035186) #24	STXBP5L (ENSMNEG00000032136) #26	GTF2E1 (ENSMNEG00000028897) #30	RABL3 (ENSMNEG00000043980) #31	HGD (ENSMNEG00000035035) #32	NDUFB4 (ENSMNEG00000034340) #35	ENSMNEG00000009924	FSTL1 (ENSMNEG00000040132) #36	LRRC58 (ENSMNEG00000045148)	ENSMNEG00000037258	GPR156 (ENSMNEG00000030384)	GSK3B (ENSMNEG00000026988)
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696.s #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Crab-eating macaque	MODERN SPECIES	11	ENSMFAG00000033728	PARP15 (ENSMFAG00000026206)	KPNA1 (ENSMFAG00000046020) #9	DTX3L (ENSMFAG00000031102) #8	PARP9 (ENSMFAG00000030796)	FAM162A (ENSMFAG00000031641) #11	MIX23 (ENSMFAG00000028753) #12	CSTA (ENSMFAG00000044624) #14	CASR (ENSMFAG00000039832) #15	CD86 (ENSMFAG00000001459) #16	ILDR1 (ENSMFAG00000039518) #17	SLC15A2 (ENSMFAG00000032143) #18	EAF2 (ENSMFAG00000046362) #19	IQCB1 (ENSMFAG00000025425) #20	GOLGB1 (ENSMFAG00000031026) #21	HCLS1 (ENSMFAG00000039904) #22	FBXO40 (ENSMFAG00000043265) #23	ARGFX (ENSMFAG00000002211)	POLQ (ENSMFAG00000001627) #24	STXBP5L (ENSMFAG00000002402) #26	ENSMFAG00000060129	ENSMFAG00000002539 #30	RABL3 (ENSMFAG00000031923) #31	HGD (ENSMFAG00000041993) #32	NDUFB4 (ENSMFAG00000038344) #35	FSTL1 (ENSMFAG00000036133) #36	LRRC58 (ENSMFAG00000003454)	GPR156 (ENSMFAG00000000407)	GSK3B (ENSMFAG00000002620)	NR1I2 (ENSMFAG00000041037)	CFAP91 (ENSMFAG00000024362)
Rhesus	MODERN SPECIES	11	PARP9 (ENSMMUG00000016381)	KPNA1 (ENSMMUG00000016379) #9	WDR5B (ENSMMUG00000016378) #10	FAM162A (ENSMMUG00000016377) #11	MIX23 (ENSMMUG00000047586) #12	CSTA (ENSMMUG00000056258) #14	CASR (ENSMMUG00000007886) #15	CD86 (ENSMMUG00000000912) #16	ILDR1 (ENSMMUG00000000911) #17	ENSMMUG00000065284	SLC15A2 (ENSMMUG00000001049) #18	EAF2 (ENSMMUG00000001048) #19	IQCB1 (ENSMMUG00000001045) #20	GOLGB1 (ENSMMUG00000013546) #21	ENSMMUG00000050100	HCLS1 (ENSMMUG00000013545) #22	FBXO40 (ENSMMUG00000013543) #23	POLQ (ENSMMUG00000007973) #24	STXBP5L (ENSMMUG00000011161) #26	ENSMMUG00000064431	GTF2E1 (ENSMMUG00000001596) #30	RABL3 (ENSMMUG00000001594) #31	HGD (ENSMMUG00000001593) #32	NDUFB4 (ENSMMUG00000001592) #35	ENSMMUG00000052213	FSTL1 (ENSMMUG00000002925) #36	LRRC58 (ENSMMUG00000000075)	GPR156 (ENSMMUG00000001981)	GSK3B (ENSMMUG00000001980)	NR1I2 (ENSMMUG00000001976)	CFAP91 (ENSMMUG00000000907)
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00910000148071	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00940000161696.c.a.c	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a
Olive baboon	MODERN SPECIES	11	ENSPANG00000033749	PARP15 (ENSPANG00000022333)	DTX3L (ENSPANG00000023613) #8	PARP9 (ENSPANG00000022289)	KPNA1 (ENSPANG00000023614) #9	WDR5B (ENSPANG00000015873) #10	FAM162A (ENSPANG00000019143) #11	MIX23 (ENSPANG00000007394) #12	CSTA (ENSPANG00000050465) #14	CASR (ENSPANG00000019728) #15	CD86 (ENSPANG00000019725) #16	ILDR1 (ENSPANG00000019975) #17	SLC15A2 (ENSPANG00000005241) #18	IQCB1 (ENSPANG00000008985) #20	GOLGB1 (ENSPANG00000019976) #21	HCLS1 (ENSPANG00000007786) #22	FBXO40 (ENSPANG00000007138) #23	POLQ (ENSPANG00000000759) #24	STXBP5L (ENSPANG00000005242) #26	ENSPANG00000025526	GTF2E1 (ENSPANG00000007012) #30	RABL3 (ENSPANG00000001339) #31	HGD (ENSPANG00000022365) #32	NDUFB4 (ENSPANG00000017762) #35	FSTL1 (ENSPANG00000011991) #36	LRRC58 (ENSPANG00000023829)	GPR156 (ENSPANG00000001001)	ENSPANG00000041383	GSK3B (ENSPANG00000006079)	NR1I2 (ENSPANG00000004760)	CFAP91 (ENSPANG00000009687)
Cercopithecinae_d	ANCESTRAL SPECIES	58	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00910000148218	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00910000148071	ENSGT00950000183204.a #23	ENSGT00730000111572.a.a	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00940000161696.c.a.c	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a
Drill	MODERN SPECIES	282	DTX3L (ENSMLEG00000028223) #8	PARP9 (ENSMLEG00000037849)	KPNA1 (ENSMLEG00000030179) #9	ENSMLEG00000025131	WDR5B (ENSMLEG00000027036) #10	FAM162A (ENSMLEG00000033101) #11	MIX23 (ENSMLEG00000035666) #12	CSTA (ENSMLEG00000032600) #14	CASR (ENSMLEG00000028566) #15	CD86 (ENSMLEG00000040063) #16	ILDR1 (ENSMLEG00000039139) #17	SLC15A2 (ENSMLEG00000013372) #18	EAF2 (ENSMLEG00000039716) #19	IQCB1 (ENSMLEG00000039855) #20	GOLGB1 (ENSMLEG00000035907) #21	HCLS1 (ENSMLEG00000029140) #22	ENSMLEG00000037001	FBXO40 (ENSMLEG00000029856) #23	ARGFX (ENSMLEG00000033782)	POLQ (ENSMLEG00000032728) #24	STXBP5L (ENSMLEG00000039302) #26	ENSMLEG00000042332	GTF2E1 (ENSMLEG00000029434) #30	RABL3 (ENSMLEG00000028177) #31	ENSMLEG00000038919	HGD (ENSMLEG00000021037) #32	NDUFB4 (ENSMLEG00000037981) #35
Sooty mangabey	MODERN SPECIES	149	DTX3L (ENSCATG00000038398) #8	PARP9 (ENSCATG00000033365)	ENSCATG00000038570	KPNA1 (ENSCATG00000039950) #9	WDR5B (ENSCATG00000002794) #10	FAM162A (ENSCATG00000032959) #11	MIX23 (ENSCATG00000033011) #12	CSTA (ENSCATG00000037381) #14	CASR (ENSCATG00000037595) #15	CD86 (ENSCATG00000033649) #16	ILDR1 (ENSCATG00000030468) #17	SLC15A2 (ENSCATG00000031629) #18	EAF2 (ENSCATG00000029521) #19	IQCB1 (ENSCATG00000029985) #20	GOLGB1 (ENSCATG00000029546) #21	HCLS1 (ENSCATG00000041184) #22	FBXO40 (ENSCATG00000029647) #23	ARGFX (ENSCATG00000026923)	ENSCATG00000037854	POLQ (ENSCATG00000014007) #24	STXBP5L (ENSCATG00000033294) #26	ENSCATG00000000823	GTF2E1 (ENSCATG00000015158) #30	RABL3 (ENSCATG00000032561) #31	ENSCATG00000037087	HGD (ENSCATG00000033112) #32	NDUFB4 (ENSCATG00000043235) #35	FSTL1 (ENSCATG00000042936) #36	LRRC58 (ENSCATG00000029315)	GPR156 (ENSCATG00000036077)	GSK3B (ENSCATG00000034546)
Vervet Monkey	MODERN SPECIES	14	DTX3L (ENSCSAG00000007418) #8	PARP9 (ENSCSAG00000007401)	KPNA1 (ENSCSAG00000007394) #9	WDR5B (ENSCSAG00000018716) #10	FAM162A (ENSCSAG00000007388) #11	MIX23 (ENSCSAG00000007385) #12	CSTA (ENSCSAG00000007377) #14	CASR (ENSCSAG00000007371) #15	CD86 (ENSCSAG00000007366) #16	ILDR1 (ENSCSAG00000007351) #17	SLC15A2 (ENSCSAG00000007326) #18	EAF2 (ENSCSAG00000007313) #19	IQCB1 (ENSCSAG00000007306) #20	ENSCSAG00000018717	GOLGB1 (ENSCSAG00000007292) #21	HCLS1 (ENSCSAG00000007278) #22	FBXO40 (ENSCSAG00000007268) #23	POLQ (ENSCSAG00000007239) #24	STXBP5L (ENSCSAG00000007174) #26	GTF2E1 (ENSCSAG00000007159) #30	RABL3 (ENSCSAG00000007155) #31	HGD (ENSCSAG00000007149) #32	ENSCSAG00000007142 #35	FSTL1 (ENSCSAG00000007135) #36	LRRC58 (ENSCSAG00000007132)	GPR156 (ENSCSAG00000007128)	GSK3B (ENSCSAG00000007111)	ENSCSAG00000007102	NR1I2 (ENSCSAG00000007092)	CFAP91 (ENSCSAG00000007085)	COX17 (ENSCSAG00000007074)
Platyrrhini	ANCESTRAL SPECIES	37	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Cebidae	ANCESTRAL SPECIES	35	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b
Marmoset	MODERN SPECIES	6	PARP15 (ENSCJAG00000007967)	DTX3L (ENSCJAG00000007986) #8	PARP9 (ENSCJAG00000008000)	KPNA1 (ENSCJAG00000008033) #9	WDR5B (ENSCJAG00000022130) #10	FAM162A (ENSCJAG00000008116) #11	ENSCJAG00000008132 #12	CSTA (ENSCJAG00000039985) #14	CASR (ENSCJAG00000008145) #15	CD86 (ENSCJAG00000008181) #16	ILDR1 (ENSCJAG00000008227) #17	SLC15A2 (ENSCJAG00000008258) #18	EAF2 (ENSCJAG00000008358) #19	IQCB1 (ENSCJAG00000008369) #20	GOLGB1 (ENSCJAG00000008408) #21	HCLS1 (ENSCJAG00000008451) #22	POLQ (ENSCJAG00000008508) #24	ARGFX (ENSCJAG00000008507)	STXBP5L (ENSCJAG00000008529) #26	ENSCJAG00000077120	GTF2E1 (ENSCJAG00000008605) #30	RABL3 (ENSCJAG00000008611) #31	HGD (ENSCJAG00000008626) #32	NDUFB4 (ENSCJAG00000008695) #35	FSTL1 (ENSCJAG00000008700) #36	ENSCJAG00000078663	LRRC58 (ENSCJAG00000008751)	GPR156 (ENSCJAG00000038418)	GSK3B (ENSCJAG00000008783)	NR1I2 (ENSCJAG00000008854)	CFAP91 (ENSCJAG00000008891)
Cebidae_a	ANCESTRAL SPECIES	99	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053.f #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572
Capuchin	MODERN SPECIES	387	DTX3L (ENSCCAG00000017964) #8	PARP9 (ENSCCAG00000036930)	KPNA1 (ENSCCAG00000034116) #9	WDR5B (ENSCCAG00000000075) #10	FAM162A (ENSCCAG00000026814) #11	MIX23 (ENSCCAG00000037781) #12	CSTA (ENSCCAG00000034510) #14	ENSCCAG00000024387	CASR (ENSCCAG00000029942) #15	CD86 (ENSCCAG00000022590) #16	ILDR1 (ENSCCAG00000034838) #17	SLC15A2 (ENSCCAG00000031646) #18	EAF2 (ENSCCAG00000037719) #19	IQCB1 (ENSCCAG00000020188) #20	GOLGB1 (ENSCCAG00000029327) #21	HCLS1 (ENSCCAG00000033158) #22	FBXO40 (ENSCCAG00000029163) #23	ARGFX (ENSCCAG00000037179)
Bolivian squirrel monkey	MODERN SPECIES	191	PARP15 (ENSSBOG00000019346)	DTX3L (ENSSBOG00000025291) #8	PARP9 (ENSSBOG00000024211)	KPNA1 (ENSSBOG00000027857) #9	WDR5B (ENSSBOG00000009156) #10	FAM162A (ENSSBOG00000033920) #11	MIX23 (ENSSBOG00000017668) #12	CSTA (ENSSBOG00000032240) #14	CASR (ENSSBOG00000034337) #15	CD86 (ENSSBOG00000021428) #16	ILDR1 (ENSSBOG00000029380) #17	SLC15A2 (ENSSBOG00000029048) #18	EAF2 (ENSSBOG00000030373) #19	IQCB1 (ENSSBOG00000024058) #20	GOLGB1 (ENSSBOG00000025470) #21	HCLS1 (ENSSBOG00000021050) #22	FBXO40 (ENSSBOG00000001222) #23	ARGFX (ENSSBOG00000033338)	POLQ (ENSSBOG00000031950) #24
Mas night monkey	MODERN SPECIES	763															GOLGB1 (ENSANAG00000022718) #21	HCLS1 (ENSANAG00000027389) #22	FBXO40 (ENSANAG00000020395) #23	ARGFX (ENSANAG00000021156)	POLQ (ENSANAG00000024407) #24	ENSANAG00000022191	ENSANAG00000024851
Tarsier	MODERN SPECIES	4679																HCLS1 (ENSTSYG00000012897) #22	FBXO40 (ENSTSYG00000036030) #23	POLQ (ENSTSYG00000009550) #24
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Mouse lemur	MODERN SPECIES		ENSMICG00000049115	KPNA1 (ENSMICG00000048988) #9	WDR5B (ENSMICG00000049311) #10	FAM162A (ENSMICG00000049452) #11	MIX23 (ENSMICG00000049469) #12	ENSMICG00000049409 #14	ENSMICG00000049550 #14	ENSMICG00000049119 #14	CASR (ENSMICG00000049579) #15	CD86 (ENSMICG00000049554) #16	ILDR1 (ENSMICG00000049269) #17	SLC15A2 (ENSMICG00000049070) #18	EAF2 (ENSMICG00000048552) #19	IQCB1 (ENSMICG00000049588) #20	GOLGB1 (ENSMICG00000048527) #21	HCLS1 (ENSMICG00000049096) #22	FBXO40 (ENSMICG00000049444) #23	POLQ (ENSMICG00000049493) #24	STXBP5L (ENSMICG00000049262) #26	ENSMICG00000049228	GTF2E1 (ENSMICG00000049416) #30	RABL3 (ENSMICG00000049288) #31	HGD (ENSMICG00000049553) #32	NDUFB4 (ENSMICG00000049509) #35	FSTL1 (ENSMICG00000049203) #36	LRRC58 (ENSMICG00000049536)	GPR156 (ENSMICG00000049051)	GSK3B (ENSMICG00000049060)	NR1I2 (ENSMICG00000049095)	CFAP91 (ENSMICG00000049028)	COX17 (ENSMICG00000049148)
Lemuriformes_a	ANCESTRAL SPECIES	9	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Greater bamboo lemur	MODERN SPECIES	1408			ENSPSMG00000005941	KPNA1 (ENSPSMG00000005929) #9	WDR5B (ENSPSMG00000005910) #10	FAM162A (ENSPSMG00000005906) #11	MIX23 (ENSPSMG00000005898) #12	CSTA (ENSPSMG00000005879) #14	CASR (ENSPSMG00000005858) #15	CD86 (ENSPSMG00000005812) #16	ILDR1 (ENSPSMG00000005754) #17	SLC15A2 (ENSPSMG00000005619) #18	EAF2 (ENSPSMG00000005569) #19	IQCB1 (ENSPSMG00000005549) #20	GOLGB1 (ENSPSMG00000005268) #21	HCLS1 (ENSPSMG00000005051) #22	FBXO40 (ENSPSMG00000004950) #23	POLQ (ENSPSMG00000004941) #24
Coquerels sifaka	MODERN SPECIES	51	PARP15 (ENSPCOG00000025615)	DTX3L (ENSPCOG00000014270) #8	PARP9 (ENSPCOG00000023556)	KPNA1 (ENSPCOG00000004538) #9	WDR5B (ENSPCOG00000003115) #10	FAM162A (ENSPCOG00000024148) #11	MIX23 (ENSPCOG00000026503) #12	ENSPCOG00000016710 #14	CASR (ENSPCOG00000016201) #15	CD86 (ENSPCOG00000021882) #16	ILDR1 (ENSPCOG00000013181) #17	SLC15A2 (ENSPCOG00000009645) #18	EAF2 (ENSPCOG00000027591) #19	IQCB1 (ENSPCOG00000024683) #20	GOLGB1 (ENSPCOG00000008937) #21	HCLS1 (ENSPCOG00000019776) #22	FBXO40 (ENSPCOG00000026519) #23	POLQ (ENSPCOG00000024680) #24	STXBP5L (ENSPCOG00000018919) #26	ENSPCOG00000025486	GTF2E1 (ENSPCOG00000026236) #30	RABL3 (ENSPCOG00000022230) #31	ENSPCOG00000018784	HGD (ENSPCOG00000028747) #32	NDUFB4 (ENSPCOG00000028746) #35	FSTL1 (ENSPCOG00000011818) #36	LRRC58 (ENSPCOG00000003421)	GPR156 (ENSPCOG00000025801)	ENSPCOG00000022587	GSK3B (ENSPCOG00000023535)	NR1I2 (ENSPCOG00000025084)
Bushbaby	MODERN SPECIES	204	ENSOGAG00000006235	ENSOGAG00000028654 #8	PARP9 (ENSOGAG00000001801)	KPNA1 (ENSOGAG00000003198) #9	WDR5B (ENSOGAG00000033502) #10	FAM162A (ENSOGAG00000003194) #11	MIX23 (ENSOGAG00000003190) #12	CSTA (ENSOGAG00000032747) #14	CASR (ENSOGAG00000003188) #15	CD86 (ENSOGAG00000000801) #16	ILDR1 (ENSOGAG00000000797) #17	SLC15A2 (ENSOGAG00000000794) #18	EAF2 (ENSOGAG00000000793) #19	IQCB1 (ENSOGAG00000004271) #20	GOLGB1 (ENSOGAG00000024169) #21	HCLS1 (ENSOGAG00000005785) #22	FBXO40 (ENSOGAG00000017238) #23	ENSOGAG00000002406	POLQ (ENSOGAG00000015795) #24	STXBP5L (ENSOGAG00000015785) #26	GTF2E1 (ENSOGAG00000026188) #30	RABL3 (ENSOGAG00000005961) #31	HGD (ENSOGAG00000005957) #32	NDUFB4 (ENSOGAG00000005956) #35	FSTL1 (ENSOGAG00000004636) #36	LRRC58 (ENSOGAG00000004634)	GPR156 (ENSOGAG00000006028)	GSK3B (ENSOGAG00000006019)	NR1I2 (ENSOGAG00000006017)	CFAP91 (ENSOGAG00000005048)	COX17 (ENSOGAG00000005047)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118
Eulipotyphla	ANCESTRAL SPECIES	79															ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26
Hedgehog	MODERN SPECIES	6838															GOLGB1 (ENSEEUG00000001192) #21	HCLS1 (ENSEEUG00000001183) #22	FBXO40 (ENSEEUG00000001173) #23
Common shrew	MODERN SPECIES	3185															GOLGB1 (ENSSARG00000002101) #21	HCLS1 (ENSSARG00000002064) #22	FBXO40 (ENSSARG00000002057) #23	ENSSARG00000002039	POLQ (ENSSARG00000001970) #24	STXBP5L (ENSSARG00000001911) #26
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Carnivora	ANCESTRAL SPECIES	10	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Caniformia	ANCESTRAL SPECIES		ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a.m #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a.m #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00390000018829.f.b	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Ursidae	ANCESTRAL SPECIES	1	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a.m #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00390000018829.f.b	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Giant Panda	MODERN SPECIES		ENSAMEG00000004886	DTX3L (ENSAMEG00000014401) #8	PARP9 (ENSAMEG00000014386)	ENSAMEG00000026146 #9	WDR5B (ENSAMEG00000019768) #10	FAM162A (ENSAMEG00000014316) #11	MIX23 (ENSAMEG00000014299) #12	ENSAMEG00000014297 #14	CASR (ENSAMEG00000014276) #15	CD86 (ENSAMEG00000014263) #16	ILDR1 (ENSAMEG00000014245) #17	SLC15A2 (ENSAMEG00000014194) #18	EAF2 (ENSAMEG00000014180) #19	IQCB1 (ENSAMEG00000015044) #20	GOLGB1 (ENSAMEG00000015002) #21	HCLS1 (ENSAMEG00000014955) #22	FBXO40 (ENSAMEG00000014952) #23	POLQ (ENSAMEG00000014870) #24	STXBP5L (ENSAMEG00000026792) #26	GTF2E1 (ENSAMEG00000004829) #30	RABL3 (ENSAMEG00000004809) #31	HGD (ENSAMEG00000004767) #32	NDUFB4 (ENSAMEG00000027332) #35	FSTL1 (ENSAMEG00000006917) #36	LRRC58 (ENSAMEG00000006946)	GPR156 (ENSAMEG00000006958)	GSK3B (ENSAMEG00000006975)	NR1I2 (ENSAMEG00000007006)	CFAP91 (ENSAMEG00000007087)	COX17 (ENSAMEG00000029657)	POPDC2 (ENSAMEG00000007148)
Ursus	ANCESTRAL SPECIES	44	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a.m #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00390000018829.f.b	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Polar bear	MODERN SPECIES	313	ENSUMAG00000025218	DTX3L (ENSUMAG00000025219) #8	PARP9 (ENSUMAG00000025220)	KPNA1 (ENSUMAG00000025221) #9	WDR5B (ENSUMAG00000025222) #10	ENSUMAG00000025223 #11	MIX23 (ENSUMAG00000025224) #12	ENSUMAG00000025225 #14	CASR (ENSUMAG00000025226) #15	CD86 (ENSUMAG00000025229) #16	ENSUMAG00000025230	SLC15A2 (ENSUMAG00000025231) #18	EAF2 (ENSUMAG00000025232) #19	IQCB1 (ENSUMAG00000025233) #20	GOLGB1 (ENSUMAG00000025234) #21	HCLS1 (ENSUMAG00000025248) #22	FBXO40 (ENSUMAG00000025249) #23	ENSUMAG00000025250	POLQ (ENSUMAG00000025251) #24	STXBP5L (ENSUMAG00000025252) #26	GTF2E1 (ENSUMAG00000025255) #30	RABL3 (ENSUMAG00000025256) #31	HGD (ENSUMAG00000025257) #32	NDUFB4 (ENSUMAG00000025258) #35	FSTL1 (ENSUMAG00000025259) #36	LRRC58 (ENSUMAG00000025261)	GPR156 (ENSUMAG00000025262)	GSK3B (ENSUMAG00000025264)	NR1I2 (ENSUMAG00000025266)	CFAP91 (ENSUMAG00000025267)	COX17 (ENSUMAG00000025268)
Mustelinae	ANCESTRAL SPECIES	20	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a.m #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b.a #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00390000018829.f.b	ENSGT00940000158694 #24
American mink	MODERN SPECIES	620															GOLGB1 (ENSNVIG00000008197) #21	HCLS1 (ENSNVIG00000008095) #22	FBXO40 (ENSNVIG00000008079) #23	ENSNVIG00000008053	POLQ (ENSNVIG00000007713) #24
Ferret	MODERN SPECIES	176	PARP15 (ENSMPUG00000004730)	DTX3L (ENSMPUG00000004741) #8	PARP9 (ENSMPUG00000004750)	KPNA1 (ENSMPUG00000004757) #9	FAM162A (ENSMPUG00000004773) #11	WDR5B (ENSMPUG00000018896) #10	MIX23 (ENSMPUG00000004777) #12	CSTA (ENSMPUG00000004783) #14	CASR (ENSMPUG00000004798) #15	CD86 (ENSMPUG00000004803) #16	ILDR1 (ENSMPUG00000004808) #17	SLC15A2 (ENSMPUG00000004818) #18	EAF2 (ENSMPUG00000004844) #19	IQCB1 (ENSMPUG00000004852) #20	GOLGB1 (ENSMPUG00000004867) #21	HCLS1 (ENSMPUG00000004886) #22	FBXO40 (ENSMPUG00000004973) #23	POLQ (ENSMPUG00000004980) #24	TRIM42 (ENSMPUG00000004993)	ENSMPUG00000018902	CLSTN2 (ENSMPUG00000004999)
Canidae	ANCESTRAL SPECIES	35	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a.m #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Canis_lupus	ANCESTRAL SPECIES	31	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a.m #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b
Dingo	MODERN SPECIES	65	PARP15 (ENSCAFG00020005735)	DTX3L (ENSCAFG00020005740) #8	PARP9 (ENSCAFG00020005744)	KPNA1 (ENSCAFG00020005751) #9	WDR5B (ENSCAFG00020005756) #10	FAM162A (ENSCAFG00020005763) #11	MIX23 (ENSCAFG00020005773) #12	CSTA (ENSCAFG00020005785) #14	CASR (ENSCAFG00020005795) #15	CD86 (ENSCAFG00020005830) #16	ILDR1 (ENSCAFG00020005836) #17	SLC15A2 (ENSCAFG00020005845) #18	EAF2 (ENSCAFG00020005884) #19	IQCB1 (ENSCAFG00020005889) #20	GOLGB1 (ENSCAFG00020005894) #21	HCLS1 (ENSCAFG00020005905) #22	FBXO40 (ENSCAFG00020005920) #23	POLQ (ENSCAFG00020005928) #24	STXBP5L (ENSCAFG00020005993) #26	GTF2E1 (ENSCAFG00020006391) #30	RABL3 (ENSCAFG00020006397) #31	HGD (ENSCAFG00020006416) #32	NDUFB4 (ENSCAFG00020006504) #35	ENSCAFG00020006505	FSTL1 (ENSCAFG00020006511) #36	LRRC58 (ENSCAFG00020006515)	GPR156 (ENSCAFG00020006519)	GSK3B (ENSCAFG00020006540)	NR1I2 (ENSCAFG00020006550)	ENSCAFG00020006572	ENSCAFG00020006574
Dog	MODERN SPECIES	26	PARP15 (ENSCAFG00845024135)	DTX3L (ENSCAFG00845023939) #8	PARP9 (ENSCAFG00845023649)	WDR5B (ENSCAFG00845023565) #10	KPNA1 (ENSCAFG00845023382) #9	FAM162A (ENSCAFG00845023253) #11	CCDC58 (ENSCAFG00845023125) #12	CSTA (ENSCAFG00845023052) #14	CASR (ENSCAFG00845022950) #15	CD86 (ENSCAFG00845022561) #16	ILDR1 (ENSCAFG00845022373) #17	SLC15A2 (ENSCAFG00845022167) #18	EAF2 (ENSCAFG00845022054) #19	IQCB1 (ENSCAFG00845021876) #20	GOLGB1 (ENSCAFG00845021329) #21	HCLS1 (ENSCAFG00845020698) #22	FBXO40 (ENSCAFG00845020486) #23	POLQ (ENSCAFG00845020313) #24	STXBP5L (ENSCAFG00845019533) #26	GTF2E1 (ENSCAFG00845019430) #30	HGD (ENSCAFG00845018928) #32	NDUFB4 (ENSCAFG00845018723) #35	FSTL1 (ENSCAFG00845018268) #36	LRRC58 (ENSCAFG00845018072)	GPR156 (ENSCAFG00845017899)	GSK3B (ENSCAFG00845017754)	NR1I2 (ENSCAFG00845017664)	ENSCAFG00845017584	CFAP91 (ENSCAFG00845017391)	COX17 (ENSCAFG00845017310)	POPDC2 (ENSCAFG00845017206)
Red fox	MODERN SPECIES	6	DTX3L (ENSVVUG00000022529) #8	PARP9 (ENSVVUG00000022523)	KPNA1 (ENSVVUG00000022509) #9	FAM162A (ENSVVUG00000022501) #11	MIX23 (ENSVVUG00000022499) #12	CSTA (ENSVVUG00000022498) #14	CASR (ENSVVUG00000022486) #15	CD86 (ENSVVUG00000022471) #16	ILDR1 (ENSVVUG00000022466) #17	ENSVVUG00000022463	SLC15A2 (ENSVVUG00000022457) #18	ENSVVUG00000022454	EAF2 (ENSVVUG00000022448) #19	IQCB1 (ENSVVUG00000022443) #20	GOLGB1 (ENSVVUG00000022437) #21	HCLS1 (ENSVVUG00000022434) #22	ENSVVUG00000022430	FBXO40 (ENSVVUG00000022425) #23	POLQ (ENSVVUG00000022390) #24	STXBP5L (ENSVVUG00000022321) #26	GTF2E1 (ENSVVUG00000022305) #30	RABL3 (ENSVVUG00000022300) #31	ENSVVUG00000022298	HGD (ENSVVUG00000022291) #32	NDUFB4 (ENSVVUG00000022287) #35	ENSVVUG00000022285	ENSVVUG00000022282	FSTL1 (ENSVVUG00000022275) #36	LRRC58 (ENSVVUG00000022270)	GPR156 (ENSVVUG00000022267)	GSK3B (ENSVVUG00000022258)
Felidae	ANCESTRAL SPECIES	9	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Panthera	ANCESTRAL SPECIES	17	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Panthera_a	ANCESTRAL SPECIES	21	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
leopard	MODERN SPECIES	15	DTX3L (ENSPPRG00000006373) #8	PARP9 (ENSPPRG00000009678)	KPNA1 (ENSPPRG00000010308) #9	WDR5B (ENSPPRG00000018618) #10	FAM162A (ENSPPRG00000011296) #11	MIX23 (ENSPPRG00000012735) #12	CSTA (ENSPPRG00000012891) #14	CASR (ENSPPRG00000014081) #15	ENSPPRG00000015375	CD86 (ENSPPRG00000016126) #16	ILDR1 (ENSPPRG00000019114) #17	SLC15A2 (ENSPPRG00000000860) #18	EAF2 (ENSPPRG00000001483) #19	IQCB1 (ENSPPRG00000002414) #20	GOLGB1 (ENSPPRG00000003483) #21	HCLS1 (ENSPPRG00000005291) #22	FBXO40 (ENSPPRG00000005750) #23	POLQ (ENSPPRG00000007014) #24	STXBP5L (ENSPPRG00000014151) #26	GTF2E1 (ENSPPRG00000015486) #30	RABL3 (ENSPPRG00000016325) #31	HGD (ENSPPRG00000017055) #32	ENSPPRG00000017598 #35	FSTL1 (ENSPPRG00000000812) #36	LRRC58 (ENSPPRG00000000972)	GPR156 (ENSPPRG00000003852)	GSK3B (ENSPPRG00000005066)	NR1I2 (ENSPPRG00000006305)	CFAP91 (ENSPPRG00000007429)	COX17 (ENSPPRG00000007758)	POPDC2 (ENSPPRG00000008619)
lion	MODERN SPECIES	9	DTX3L (ENSPLOG00000009845) #8	PARP9 (ENSPLOG00000009942)	KPNA1 (ENSPLOG00000010094) #9	WDR5B (ENSPLOG00000010123) #10	FAM162A (ENSPLOG00000010147) #11	MIX23 (ENSPLOG00000010210) #12	CSTA (ENSPLOG00000010302) #14	CASR (ENSPLOG00000010370) #15	ENSPLOG00000010552	CD86 (ENSPLOG00000010604) #16	ILDR1 (ENSPLOG00000010775) #17	SLC15A2 (ENSPLOG00000010963) #18	EAF2 (ENSPLOG00000011045) #19	IQCB1 (ENSPLOG00000011182) #20	GOLGB1 (ENSPLOG00000011283) #21	HCLS1 (ENSPLOG00000011526) #22	FBXO40 (ENSPLOG00000011625) #23	POLQ (ENSPLOG00000011699) #24	STXBP5L (ENSPLOG00000012229) #26	GTF2E1 (ENSPLOG00000013622) #30	RABL3 (ENSPLOG00000013672) #31	ENSPLOG00000013824	HGD (ENSPLOG00000013856) #32	ENSPLOG00000014040 #35	FSTL1 (ENSPLOG00000014135) #36	LRRC58 (ENSPLOG00000014323)	GPR156 (ENSPLOG00000014357)	GSK3B (ENSPLOG00000014540)	NR1I2 (ENSPLOG00000014646)	CFAP91 (ENSPLOG00000014979)	COX17 (ENSPLOG00000015215)
Tiger	MODERN SPECIES	584	PARP15 (ENSPTIG00000011576)	DTX3L (ENSPTIG00000012095) #8	PARP9 (ENSPTIG00000012502)	KPNA1 (ENSPTIG00000013177) #9	WDR5B (ENSPTIG00000009752) #10	FAM162A (ENSPTIG00000013653) #11	MIX23 (ENSPTIG00000013929) #12	CSTA (ENSPTIG00000014105) #14	CASR (ENSPTIG00000014260) #15	CD86 (ENSPTIG00000014681) #16	ILDR1 (ENSPTIG00000015063) #17	SLC15A2 (ENSPTIG00000015276) #18	EAF2 (ENSPTIG00000015608) #19	IQCB1 (ENSPTIG00000015820) #20	GOLGB1 (ENSPTIG00000016334) #21	HCLS1 (ENSPTIG00000016695) #22	FBXO40 (ENSPTIG00000016859) #23	POLQ (ENSPTIG00000017074) #24	STXBP5L (ENSPTIG00000017356) #26	GTF2E1 (ENSPTIG00000017960) #30	RABL3 (ENSPTIG00000018021) #31	HGD (ENSPTIG00000018099) #32	NDUFB4 (ENSPTIG00000018212) #35	FSTL1 (ENSPTIG00000018305) #36	LRRC58 (ENSPTIG00000018937)	GPR156 (ENSPTIG00000018960)	GSK3B (ENSPTIG00000019009)	NR1I2 (ENSPTIG00000019087)	CFAP91 (ENSPTIG00000019203)	COX17 (ENSPTIG00000019444)	POPDC2 (ENSPTIG00000019463)
Cat	MODERN SPECIES	240	PARP15 (ENSFCAG00000000929)	DTX3L (ENSFCAG00000000928) #8	PARP9 (ENSFCAG00000000557)	KPNA1 (ENSFCAG00000042340) #9	WDR5B (ENSFCAG00000005778) #10	FAM162A (ENSFCAG00000045838) #11	MIX23 (ENSFCAG00000025006) #12	CSTA (ENSFCAG00000008718) #14	CASR (ENSFCAG00000008717) #15	CD86 (ENSFCAG00000008716) #16	ILDR1 (ENSFCAG00000008713) #17	SLC15A2 (ENSFCAG00000008709) #18	EAF2 (ENSFCAG00000018226) #19	IQCB1 (ENSFCAG00000024558) #20	GOLGB1 (ENSFCAG00000025182) #21	HCLS1 (ENSFCAG00000015524) #22	FBXO40 (ENSFCAG00000015523) #23	POLQ (ENSFCAG00000023397) #24	STXBP5L (ENSFCAG00000015517) #26	GTF2E1 (ENSFCAG00000029289) #30	RABL3 (ENSFCAG00000031879) #31	ENSFCAG00000053064	ENSFCAG00000052566	HGD (ENSFCAG00000031534) #32	NDUFB4 (ENSFCAG00000024854) #35	FSTL1 (ENSFCAG00000029075) #36	LRRC58 (ENSFCAG00000025394)	GPR156 (ENSFCAG00000010273)	GSK3B (ENSFCAG00000040420)	NR1I2 (ENSFCAG00000006092)	CFAP91 (ENSFCAG00000006090)
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Chiroptera	ANCESTRAL SPECIES	13	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717.f #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717.f #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b
Greater horseshoe bat	MODERN SPECIES	11	PARP15 (ENSRFEG00010003726)	DTX3L (ENSRFEG00010003606) #8	PARP9 (ENSRFEG00010003581)	KPNA1 (ENSRFEG00010003555) #9	WDR5B (ENSRFEG00010003535) #10	FAM162A (ENSRFEG00010003513) #11	ENSRFEG00010003469 #12	CSTA (ENSRFEG00010003427) #14	CASR (ENSRFEG00010003395) #15	CD86 (ENSRFEG00010003352) #16	ILDR1 (ENSRFEG00010003293) #17	SLC15A2 (ENSRFEG00010003208) #18	EAF2 (ENSRFEG00010003167) #19	IQCB1 (ENSRFEG00010003132) #20	GOLGB1 (ENSRFEG00010003020) #21	HCLS1 (ENSRFEG00010002892) #22	FBXO40 (ENSRFEG00010002843) #23	POLQ (ENSRFEG00010002788) #24	STXBP5L (ENSRFEG00010002716) #26	GTF2E1 (ENSRFEG00010002637) #30	RABL3 (ENSRFEG00010002592) #31	HGD (ENSRFEG00010002548) #32	ENSRFEG00010002517 #35	FSTL1 (ENSRFEG00010002472) #36	LRRC58 (ENSRFEG00010002442)	GPR156 (ENSRFEG00010002420)	GSK3B (ENSRFEG00010002338)	NR1I2 (ENSRFEG00010002273)	CFAP91 (ENSRFEG00010002249)	ENSRFEG00010002225	POPDC2 (ENSRFEG00010002211)
Microbat	MODERN SPECIES	1021	ENSMLUG00000000507 #8	PARP9 (ENSMLUG00000006438)	ENSMLUG00000007657	KPNA1 (ENSMLUG00000000950) #9	WDR5B (ENSMLUG00000000949) #10	FAM162A (ENSMLUG00000000941) #11	CSTA (ENSMLUG00000009066) #14	CASR (ENSMLUG00000009054) #15	ENSMLUG00000029244	CD86 (ENSMLUG00000015334) #16	ILDR1 (ENSMLUG00000015320) #17	SLC15A2 (ENSMLUG00000015306) #18	EAF2 (ENSMLUG00000027320) #19	IQCB1 (ENSMLUG00000015293) #20	GOLGB1 (ENSMLUG00000024533) #21	HCLS1 (ENSMLUG00000007751) #22	FBXO40 (ENSMLUG00000007745) #23	ENSMLUG00000011532	POLQ (ENSMLUG00000007687) #24	STXBP5L (ENSMLUG00000017088) #26	GTF2E1 (ENSMLUG00000008821) #30	RABL3 (ENSMLUG00000014113) #31	HGD (ENSMLUG00000014106) #32	NDUFB4 (ENSMLUG00000027951) #35	FSTL1 (ENSMLUG00000008852) #36	LRRC58 (ENSMLUG00000016088)	GPR156 (ENSMLUG00000009359)	GSK3B (ENSMLUG00000002885)	NR1I2 (ENSMLUG00000002877)	CFAP91 (ENSMLUG00000000045)	COX17 (ENSMLUG00000008085)
Megabat	MODERN SPECIES	2844															GOLGB1 (ENSPVAG00000006245) #21	HCLS1 (ENSPVAG00000006240) #22	FBXO40 (ENSPVAG00000006239) #23	ARGFX (ENSPVAG00000006237)
Equus	ANCESTRAL SPECIES	19	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00910000147904	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036.f #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Horse	MODERN SPECIES	10	PARP9 (ENSECAG00000012331)	ENSECAG00000053139	ENSECAG00000059947	KPNA1 (ENSECAG00000017694) #9	MIX23 (ENSECAG00000023743) #12	WDR5B (ENSECAG00000046836) #10	FAM162A (ENSECAG00000020415) #11	CSTA (ENSECAG00000024043) #14	CASR (ENSECAG00000024712) #15	CD86 (ENSECAG00000012128) #16	ILDR1 (ENSECAG00000014188) #17	SLC15A2 (ENSECAG00000017315) #18	EAF2 (ENSECAG00000015083) #19	IQCB1 (ENSECAG00000019106) #20	GOLGB1 (ENSECAG00000009513) #21	HCLS1 (ENSECAG00000015460) #22	FBXO40 (ENSECAG00000013546) #23	POLQ (ENSECAG00000014314) #24	STXBP5L (ENSECAG00000010725) #26	ENSECAG00000055088	ENSECAG00000057906	ENSECAG00000045072	GTF2E1 (ENSECAG00000020441) #30	RABL3 (ENSECAG00000023059) #31	ENSECAG00000040980	HGD (ENSECAG00000023083) #32	NDUFB4 (ENSECAG00000015610) #35	FSTL1 (ENSECAG00000017891) #36	ENSECAG00000028122 #37	LRRC58 (ENSECAG00000000010)	GPR156 (ENSECAG00000024669)
Donkey	MODERN SPECIES	25	ENSEASG00005032663	ENSEASG00005026341	DTX3L (ENSEASG00005016541) #8	PARP9 (ENSEASG00005016538)	KPNA1 (ENSEASG00005015533) #9	MIX23 (ENSEASG00005015468) #12	FAM162A (ENSEASG00005015469) #11	CSTA (ENSEASG00005031611) #14	CASR (ENSEASG00005015466) #15	CD86 (ENSEASG00005015465) #16	ILDR1 (ENSEASG00005015464) #17	SLC15A2 (ENSEASG00005015215) #18	EAF2 (ENSEASG00005015156) #19	IQCB1 (ENSEASG00005015142) #20	ENSEASG00005029374 #21	HCLS1 (ENSEASG00005014348) #22	FBXO40 (ENSEASG00005014328) #23	POLQ (ENSEASG00005014326) #24	STXBP5L (ENSEASG00005012678) #26	GTF2E1 (ENSEASG00005012545) #30	RABL3 (ENSEASG00005012543) #31	ENSEASG00005037141	HGD (ENSEASG00005012531) #32	NDUFB4 (ENSEASG00005033589) #35	FSTL1 (ENSEASG00005012526) #36	LRRC58 (ENSEASG00005028750)	GPR156 (ENSEASG00005012520)	GSK3B (ENSEASG00005012514)	NR1I2 (ENSEASG00005012507)	CFAP91 (ENSEASG00005012500)	COX17 (ENSEASG00005038393)
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000164270.a.b	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Cetacea	ANCESTRAL SPECIES	10	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000164270.a.b	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000154399.a.b	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT01010000228776	ENSGT00940000161118	ENSGT00390000003024
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000164270.a.b	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000154399.a.b	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT01010000228776	ENSGT00940000161118	ENSGT00390000003024
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00390000012138.a.a.j	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696.q #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT01010000228776	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00390000012138.a.a.j	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696.q #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT01010000228776	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00390000012138.a.a.j	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696.q #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT01010000228776	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Narwhal	MODERN SPECIES	297	ENSMMNG00015005518	DTX3L (ENSMMNG00015005502) #8	PARP9 (ENSMMNG00015005477)	KPNA1 (ENSMMNG00015005449) #9	WDR5B (ENSMMNG00015005437) #10	FAM162A (ENSMMNG00015005417) #11	MIX23 (ENSMMNG00015005386) #12	CSTA (ENSMMNG00015005369) #14	CASR (ENSMMNG00015005362) #15	CD86 (ENSMMNG00015005321) #16	ILDR1 (ENSMMNG00015005290) #17	SLC15A2 (ENSMMNG00015005192) #18	EAF2 (ENSMMNG00015005168) #19	IQCB1 (ENSMMNG00015005149) #20	GOLGB1 (ENSMMNG00015005080) #21	HCLS1 (ENSMMNG00015005036) #22	FBXO40 (ENSMMNG00015005024) #23	POLQ (ENSMMNG00015004975) #24	STXBP5L (ENSMMNG00015004874) #26	GTF2E1 (ENSMMNG00015004841) #30	RABL3 (ENSMMNG00015004833) #31	HGD (ENSMMNG00015004827) #32	ENSMMNG00015004823 #35	ENSMMNG00015004821	FSTL1 (ENSMMNG00015004817) #36	LRRC58 (ENSMMNG00015004813)	GPR156 (ENSMMNG00015011308)	ENSMMNG00015011288	ENSMMNG00015011274	ENSMMNG00015011267	GSK3B (ENSMMNG00015011227)
Beluga whale	MODERN SPECIES	111	ENSDLEG00000010816	DTX3L (ENSDLEG00000010794) #8	PARP9 (ENSDLEG00000010772)	KPNA1 (ENSDLEG00000010738) #9	WDR5B (ENSDLEG00000010730) #10	FAM162A (ENSDLEG00000010716) #11	CCDC58 (ENSDLEG00000010690) #12	CSTA (ENSDLEG00000010674) #14	CASR (ENSDLEG00000010648) #15	CD86 (ENSDLEG00000010604) #16	ILDR1 (ENSDLEG00000010557) #17	SLC15A2 (ENSDLEG00000010488) #18	EAF2 (ENSDLEG00000010464) #19	IQCB1 (ENSDLEG00000010437) #20	GOLGB1 (ENSDLEG00000010229) #21	HCLS1 (ENSDLEG00000010160) #22	FBXO40 (ENSDLEG00000010124) #23	POLQ (ENSDLEG00000009816) #24	STXBP5L (ENSDLEG00000009518) #26	GTF2E1 (ENSDLEG00000009415) #30	RABL3 (ENSDLEG00000009391) #31	HGD (ENSDLEG00000009358) #32	ENSDLEG00000009345 #35	FSTL1 (ENSDLEG00000009282) #36	LRRC58 (ENSDLEG00000009270)	GPR156 (ENSDLEG00000009225)	ENSDLEG00000009196	ENSDLEG00000009189	ENSDLEG00000009167	GSK3B (ENSDLEG00000009106)	ENSDLEG00000009059
Vaquita	MODERN SPECIES	15	ENSPSNG00000008285	DTX3L (ENSPSNG00000008319) #8	PARP9 (ENSPSNG00000008365)	KPNA1 (ENSPSNG00000008414) #9	ENSPSNG00000008472 #11	WDR5B (ENSPSNG00000008522) #10	MIX23 (ENSPSNG00000008563) #12	CSTA (ENSPSNG00000008625) #14	CASR (ENSPSNG00000008682) #15	CD86 (ENSPSNG00000008792) #16	ILDR1 (ENSPSNG00000008974) #17	SLC15A2 (ENSPSNG00000009269) #18	EAF2 (ENSPSNG00000009409) #19	IQCB1 (ENSPSNG00000009466) #20	GOLGB1 (ENSPSNG00000009542) #21	HCLS1 (ENSPSNG00000009720) #22	FBXO40 (ENSPSNG00000010016) #23	POLQ (ENSPSNG00000010089) #24	STXBP5L (ENSPSNG00000010549) #26	ENSPSNG00000011986 #30	RABL3 (ENSPSNG00000012142) #31	HGD (ENSPSNG00000012244) #32	ENSPSNG00000012398 #35	FSTL1 (ENSPSNG00000012493) #36	LRRC58 (ENSPSNG00000012569)	GPR156 (ENSPSNG00000012616)	GSK3B (ENSPSNG00000012811)	ENSPSNG00000012868	ENSPSNG00000012914	CFAP91 (ENSPSNG00000013123)	POPDC2 (ENSPSNG00000013229)
Dolphin	MODERN SPECIES	1476										CD86 (ENSTTRG00000011520) #16	ILDR1 (ENSTTRG00000011519) #17	SLC15A2 (ENSTTRG00000011518) #18	EAF2 (ENSTTRG00000011517) #19	IQCB1 (ENSTTRG00000011516) #20	GOLGB1 (ENSTTRG00000011515) #21	HCLS1 (ENSTTRG00000011514) #22	FBXO40 (ENSTTRG00000011513) #23
Sperm whale	MODERN SPECIES		DTX3L (ENSPCTG00005007151) #8	PARP9 (ENSPCTG00005007217)	KPNA1 (ENSPCTG00005007272) #9	WDR5B (ENSPCTG00005007311) #10	FAM162A (ENSPCTG00005007327) #11	CCDC58 (ENSPCTG00005007365) #12	CSTA (ENSPCTG00005007431) #14	ENSPCTG00005007464	CASR (ENSPCTG00005007486) #15	CD86 (ENSPCTG00005007594) #16	ILDR1 (ENSPCTG00005007804) #17	SLC15A2 (ENSPCTG00005007982) #18	EAF2 (ENSPCTG00005008161) #19	IQCB1 (ENSPCTG00005008178) #20	GOLGB1 (ENSPCTG00005008303) #21	HCLS1 (ENSPCTG00005008835) #22	FBXO40 (ENSPCTG00005009108) #23	POLQ (ENSPCTG00005009193) #24	STXBP5L (ENSPCTG00005009787) #26	GTF2E1 (ENSPCTG00005011398) #30	RABL3 (ENSPCTG00005011446) #31	HGD (ENSPCTG00005011479) #32	NDUFB4 (ENSPCTG00005011638) #35	FSTL1 (ENSPCTG00005000217) #36	LRRC58 (ENSPCTG00005000235)	ENSPCTG00005000246	GPR156 (ENSPCTG00005000273)	GSK3B (ENSPCTG00005000333)	ENSPCTG00005000356	ENSPCTG00005000375	NR1I2 (ENSPCTG00005000415)
Blue whale	MODERN SPECIES	15	ENSBMSG00010005761	DTX3L (ENSBMSG00010005778) #8	PARP9 (ENSBMSG00010005809)	KPNA1 (ENSBMSG00010005822) #9	WDR5B (ENSBMSG00010005836) #10	FAM162A (ENSBMSG00010005850) #11	MIX23 (ENSBMSG00010005871) #12	CSTA (ENSBMSG00010005884) #14	CASR (ENSBMSG00010005910) #15	CD86 (ENSBMSG00010005973) #16	ILDR1 (ENSBMSG00010006089) #17	SLC15A2 (ENSBMSG00010006152) #18	EAF2 (ENSBMSG00010006200) #19	IQCB1 (ENSBMSG00010006219) #20	GOLGB1 (ENSBMSG00010006250) #21	HCLS1 (ENSBMSG00010006290) #22	FBXO40 (ENSBMSG00010006320) #23	ENSBMSG00010006331 #24	STXBP5L (ENSBMSG00010006447) #26	GTF2E1 (ENSBMSG00010006848) #30	RABL3 (ENSBMSG00010000075) #31	HGD (ENSBMSG00010000092) #32	ENSBMSG00010000116 #35	ENSBMSG00010000135	ENSBMSG00010000140	FSTL1 (ENSBMSG00010000173) #36	LRRC58 (ENSBMSG00010000218)	ENSBMSG00010000228	GPR156 (ENSBMSG00010000240)	GSK3B (ENSBMSG00010000277)	ENSBMSG00010000330
Pecora	ANCESTRAL SPECIES	8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000164270.a.b	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507.d #18	ENSGT00940000156507.c #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Percora_a	ANCESTRAL SPECIES	7	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00990000210901	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000164270.a.b	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507.d #18	ENSGT00940000156507.c #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Bovidae	ANCESTRAL SPECIES	9	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00990000210901	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000164270.a.b	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507.d #18	ENSGT00940000156507.c #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329
Caprinae	ANCESTRAL SPECIES	8	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00990000210901	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000164270.a.b	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507.d #18	ENSGT00940000156507.c #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329.t	ENSGT00390000002563.b.a.b
Rambouillet Sheep	MODERN SPECIES		WDR5B (ENSOARG00020009162) #10	ENSOARG00020009132	FAM162A (ENSOARG00020009080) #11	MIX23 (ENSOARG00020008933) #12	CSTA (ENSOARG00020008867) #14	ENSOARG00020008856	CASR (ENSOARG00020008720) #15	CD86 (ENSOARG00020008439) #16	ILDR1 (ENSOARG00020008051) #17	ENSOARG00020004743 #18	ENSOARG00020004306 #18	EAF2 (ENSOARG00020004257) #19	ENSOARG00020004222	IQCB1 (ENSOARG00020004195) #20	GOLGB1 (ENSOARG00020004009) #21	HCLS1 (ENSOARG00020003906) #22	FBXO40 (ENSOARG00020003874) #23	ENSOARG00020003858 #8	POLQ (ENSOARG00020003708) #24	STXBP5L (ENSOARG00020002489) #26	GTF2E1 (ENSOARG00020002411) #30	RABL3 (ENSOARG00020002395) #31	HGD (ENSOARG00020002382) #32	NDUFB4 (ENSOARG00020002367) #35	FSTL1 (ENSOARG00020002313) #36	LRRC58 (ENSOARG00020002291)	GSK3B (ENSOARG00020002145)	NR1I2 (ENSOARG00020002112)	MAATS1 (ENSOARG00020002045)	ENSOARG00020002013	POPDC2 (ENSOARG00020001991)
Goat	MODERN SPECIES		PARP9 (ENSCHIG00000016137)	KPNA1 (ENSCHIG00000026483) #9	WDR5B (ENSCHIG00000015357) #10	FAM162A (ENSCHIG00000024927) #11	MIX23 (ENSCHIG00000010750) #12	CSTA (ENSCHIG00000017256) #14	CASR (ENSCHIG00000026972) #15	CD86 (ENSCHIG00000016051) #16	ILDR1 (ENSCHIG00000011737) #17	ENSCHIG00000015326 #18	ENSCHIG00000016787 #18	EAF2 (ENSCHIG00000026173) #19	ENSCHIG00000012844	IQCB1 (ENSCHIG00000020033) #20	ENSCHIG00000027245 #21	HCLS1 (ENSCHIG00000026512) #22	FBXO40 (ENSCHIG00000015913) #23	POLQ (ENSCHIG00000013841) #24	STXBP5L (ENSCHIG00000021826) #26	GTF2E1 (ENSCHIG00000010996) #30	RABL3 (ENSCHIG00000017365) #31	HGD (ENSCHIG00000026560) #32	NDUFB4 (ENSCHIG00000014038) #35	FSTL1 (ENSCHIG00000019503) #36	LRRC58 (ENSCHIG00000025792)	GPR156 (ENSCHIG00000021430)	GSK3B (ENSCHIG00000014577)	NR1I2 (ENSCHIG00000011418)	CFAP91 (ENSCHIG00000019072)	COX17 (ENSCHIG00000026140)	POPDC2 (ENSCHIG00000014963)
Bovinae	ANCESTRAL SPECIES	6	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000164270.a.b	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507.d #18	ENSGT00940000156507.c #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.ib.a.a #35	ENSGT00960000190801	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00960000192753
Bos	ANCESTRAL SPECIES	7	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT01020000230819	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507.d #18	ENSGT00940000156507.c #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.ib.a.a #35	ENSGT00960000190801	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00960000192753
Bos_a	ANCESTRAL SPECIES	5	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000164270.a.b	ENSGT01020000230819	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507.d #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.ib.a.a #35	ENSGT00960000190801	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Wild yak	MODERN SPECIES	775													EAF2 (ENSBMUG00000004560) #19	IQCB1 (ENSBMUG00000004605) #20	GOLGB1 (ENSBMUG00000004808) #21	HCLS1 (ENSBMUG00000004975) #22	FBXO40 (ENSBMUG00000004998) #23	POLQ (ENSBMUG00000005052) #24	STXBP5L (ENSBMUG00000005409) #26
Domestic yak	MODERN SPECIES		KPNA1 (ENSBGRG00000007217) #9	WDR5B (ENSBGRG00000007190) #10	ENSBGRG00000007133	ENSBGRG00000005048	FAM162A (ENSBGRG00000005022) #11	MIX23 (ENSBGRG00000004919) #12	ENSBGRG00000004879 #14	ENSBGRG00000004863	CASR (ENSBGRG00000004818) #15	CD86 (ENSBGRG00000004781) #16	ILDR1 (ENSBGRG00000004730) #17	SLC15A2 (ENSBGRG00000004479) #18	EAF2 (ENSBGRG00000004433) #19	IQCB1 (ENSBGRG00000004390) #20	GOLGB1 (ENSBGRG00000003446) #21	HCLS1 (ENSBGRG00000003280) #22	FBXO40 (ENSBGRG00000003263) #23	ENSBGRG00000003256	POLQ (ENSBGRG00000002979) #24	STXBP5L (ENSBGRG00000002895) #26	GTF2E1 (ENSBGRG00000002850) #30	RABL3 (ENSBGRG00000002799) #31	HGD (ENSBGRG00000002735) #32	ENSBGRG00000002707 #35	ENSBGRG00000002696	FSTL1 (ENSBGRG00000002621) #36	LRRC58 (ENSBGRG00000002589)	GPR156 (ENSBGRG00000002541)	GSK3B (ENSBGRG00000002466)	NR1I2 (ENSBGRG00000002432)	CFAP91 (ENSBGRG00000002380)
Bos_b	ANCESTRAL SPECIES	5	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT01020000230819	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507.d #18	ENSGT00940000156507.c #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133.ib.a.a #35	ENSGT00960000190801	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00960000192753	ENSGT00390000003024
Cow	MODERN SPECIES		PARP9 (ENSBTAG00000021791)	KPNA1 (ENSBTAG00000011143) #9	WDR5B (ENSBTAG00000054326) #10	FAM162A (ENSBTAG00000011140) #11	MIX23 (ENSBTAG00000054520) #12	CSTA (ENSBTAG00000010688) #14	ENSBTAG00000014133	CASR (ENSBTAG00000003865) #15	CD86 (ENSBTAG00000013118) #16	ILDR1 (ENSBTAG00000004705) #17	ENSBTAG00000001442 #18	ENSBTAG00000033166 #18	EAF2 (ENSBTAG00000013070) #19	IQCB1 (ENSBTAG00000013069) #20	GOLGB1 (ENSBTAG00000008862) #21	HCLS1 (ENSBTAG00000001009) #22	FBXO40 (ENSBTAG00000014508) #23	POLQ (ENSBTAG00000001920) #24	STXBP5L (ENSBTAG00000001918) #26	GTF2E1 (ENSBTAG00000016848) #30	RABL3 (ENSBTAG00000015898) #31	HGD (ENSBTAG00000015895) #32	NDUFB4 (ENSBTAG00000015892) #35	ENSBTAG00000048370	FSTL1 (ENSBTAG00000022155) #36	LRRC58 (ENSBTAG00000033170)	GPR156 (ENSBTAG00000001464)	GSK3B (ENSBTAG00000048057)	NR1I2 (ENSBTAG00000019557)	ENSBTAG00000053648	CFAP91 (ENSBTAG00000001293)
Hybrid Bos Indicus	MODERN SPECIES		WDR5B (ENSBIXG00005006775) #10	FAM162A (ENSBIXG00005010576) #11	MIX23 (ENSBIXG00005010630) #12	CSTA (ENSBIXG00005010645) #14	ENSBIXG00005010673	CASR (ENSBIXG00005010724) #15	ENSBIXG00005010732	CD86 (ENSBIXG00005010771) #16	ILDR1 (ENSBIXG00005010834) #17	ENSBIXG00005010860	ENSBIXG00005001005 #18	ENSBIXG00005006204	EAF2 (ENSBIXG00005011098) #19	IQCB1 (ENSBIXG00005000543) #20	GOLGB1 (ENSBIXG00005011387) #21	HCLS1 (ENSBIXG00005011592) #22	FBXO40 (ENSBIXG00005006109) #23	POLQ (ENSBIXG00005011744) #24	STXBP5L (ENSBIXG00005011853) #26	GTF2E1 (ENSBIXG00005011917) #30	RABL3 (ENSBIXG00005011954) #31	HGD (ENSBIXG00005007473) #32	ENSBIXG00005011993 #35	FSTL1 (ENSBIXG00005012192) #36	LRRC58 (ENSBIXG00005012232)	GPR156 (ENSBIXG00005012249)	ENSBIXG00005012259	GSK3B (ENSBIXG00005005384)	NR1I2 (ENSBIXG00005005385)	ENSBIXG00005000372	ENSBIXG00005012326
American bison	MODERN SPECIES	3132													EAF2 (ENSBBBG00000015210) #19	IQCB1 (ENSBBBG00000015247) #20	GOLGB1 (ENSBBBG00000001400) #21	HCLS1 (ENSBBBG00000001352) #22	FBXO40 (ENSBBBG00000001339) #23	POLQ (ENSBBBG00000001292) #24	STXBP5L (ENSBBBG00000015534) #26	GTF2E1 (ENSBBBG00000015570) #30	RABL3 (ENSBBBG00000000791) #31	HGD (ENSBBBG00000003893) #32	ENSBBBG00000015609 #35	ENSBBBG00000015613	FSTL1 (ENSBBBG00000003439) #36	LRRC58 (ENSBBBG00000015618)	GPR156 (ENSBBBG00000003904)	GSK3B (ENSBBBG00000003911)	NR1I2 (ENSBBBG00000015694)	ENSBBBG00000002645	ENSBBBG00000015706
Siberian musk deer	MODERN SPECIES	138	FAM162A (ENSMMSG00000015960) #11	MIX23 (ENSMMSG00000015851) #12	CSTA (ENSMMSG00000015826) #14	ENSMMSG00000015816	CASR (ENSMMSG00000015755) #15	CD86 (ENSMMSG00000015699) #16	ILDR1 (ENSMMSG00000015655) #17	ENSMMSG00000015475 #18	ENSMMSG00000015451	ENSMMSG00000015437	ENSMMSG00000015419	ENSMMSG00000015360 #18	EAF2 (ENSMMSG00000015318) #19	IQCB1 (ENSMMSG00000015271) #20	GOLGB1 (ENSMMSG00000015000) #21	HCLS1 (ENSMMSG00000014862) #22	FBXO40 (ENSMMSG00000014845) #23	POLQ (ENSMMSG00000014775) #24	STXBP5L (ENSMMSG00000013838) #26	GTF2E1 (ENSMMSG00000013738) #30	RABL3 (ENSMMSG00000013700) #31	HGD (ENSMMSG00000013668) #32	NDUFB4 (ENSMMSG00000013638) #35	FSTL1 (ENSMMSG00000013565) #36	LRRC58 (ENSMMSG00000013548)	GPR156 (ENSMMSG00000013492)	GSK3B (ENSMMSG00000013438)	NR1I2 (ENSMMSG00000013379)	CFAP91 (ENSMMSG00000013329)	COX17 (ENSMMSG00000013312)	POPDC2 (ENSMMSG00000013284)
Yarkand deer	MODERN SPECIES	10	DTX3L (ENSCHYG00000008340) #8	PARP9 (ENSCHYG00000008198)	KPNA1 (ENSCHYG00000008125) #9	WDR5B (ENSCHYG00000008111) #10	FAM162A (ENSCHYG00000008033) #11	MIX23 (ENSCHYG00000007933) #12	CSTA (ENSCHYG00000007882) #14	CASR (ENSCHYG00000007820) #15	CD86 (ENSCHYG00000007758) #16	ILDR1 (ENSCHYG00000007677) #17	SLC15A2 (ENSCHYG00000007501) #18	EAF2 (ENSCHYG00000007440) #19	ENSCHYG00000007418	IQCB1 (ENSCHYG00000007370) #20	GOLGB1 (ENSCHYG00000007048) #21	HCLS1 (ENSCHYG00000006945) #22	FBXO40 (ENSCHYG00000006909) #23	ENSCHYG00000006896	POLQ (ENSCHYG00000006699) #24	STXBP5L (ENSCHYG00000006523) #26	ENSCHYG00000006478	GTF2E1 (ENSCHYG00000006448) #30	RABL3 (ENSCHYG00000006369) #31	HGD (ENSCHYG00000006320) #32	NDUFB4 (ENSCHYG00000006263) #35	FSTL1 (ENSCHYG00000006072) #36	LRRC58 (ENSCHYG00000006018)	GPR156 (ENSCHYG00000005936)	GSK3B (ENSCHYG00000005810)	NR1I2 (ENSCHYG00000005717)	CFAP91 (ENSCHYG00000005544)
Camelidae	ANCESTRAL SPECIES		ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b
Arabian camel	MODERN SPECIES		DTX3L (ENSCDRG00005006821) #8	PARP9 (ENSCDRG00005006932)	KPNA1 (ENSCDRG00005006961) #9	WDR5B (ENSCDRG00005007033) #10	FAM162A (ENSCDRG00005007051) #11	MIX23 (ENSCDRG00005007105) #12	CSTA (ENSCDRG00005007175) #14	ENSCDRG00005007199	CASR (ENSCDRG00005007236) #15	CD86 (ENSCDRG00005007380) #16	ILDR1 (ENSCDRG00005007584) #17	SLC15A2 (ENSCDRG00005007797) #18	EAF2 (ENSCDRG00005007901) #19	IQCB1 (ENSCDRG00005008000) #20	GOLGB1 (ENSCDRG00005008124) #21	HCLS1 (ENSCDRG00005008645) #22	FBXO40 (ENSCDRG00005008889) #23	POLQ (ENSCDRG00005009042) #24	STXBP5L (ENSCDRG00005009380) #26	GTF2E1 (ENSCDRG00005009907) #30	RABL3 (ENSCDRG00005009963) #31	HGD (ENSCDRG00005010063) #32	NDUFB4 (ENSCDRG00005010214) #35	FSTL1 (ENSCDRG00005010316) #36	LRRC58 (ENSCDRG00005010565)	GPR156 (ENSCDRG00005010598)	GSK3B (ENSCDRG00005010672)	NR1I2 (ENSCDRG00005010792)	CFAP91 (ENSCDRG00005011002)	COX17 (ENSCDRG00005011051)	POPDC2 (ENSCDRG00005011064)
Alpaca	MODERN SPECIES	2934												SLC15A2 (ENSVPAG00000003786) #18	EAF2 (ENSVPAG00000003785) #19	IQCB1 (ENSVPAG00000003784) #20	GOLGB1 (ENSVPAG00000003783) #21	ENSVPAG00000003782 #22	FBXO40 (ENSVPAG00000003781) #23	ENSVPAG00000003780	POLQ (ENSVPAG00000003779) #24	STXBP5L (ENSVPAG00000003778) #26	GTF2E1 (ENSVPAG00000003777) #30	RABL3 (ENSVPAG00000003776) #31	HGD (ENSVPAG00000003775) #32	NDUFB4 (ENSVPAG00000003774) #35	FSTL1 (ENSVPAG00000003772) #36	LRRC58 (ENSVPAG00000003771)	GPR156 (ENSVPAG00000003770)	GSK3B (ENSVPAG00000003769)	CFAP91 (ENSVPAG00000003768)	COX17 (ENSVPAG00000003767)	POPDC2 (ENSVPAG00000003766)
Suina	ANCESTRAL SPECIES	1	ENSGT00940000163672	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b
Pig	MODERN SPECIES	4	KPNA1 (ENSSSCG00000028475) #9	WDR5B (ENSSSCG00000053171) #10	FAM162A (ENSSSCG00000026990) #11	MIX23 (ENSSSCG00000025107) #12	ENSSSCG00000053320 #14	ENSSSCG00000028871 #14	ENSSSCG00000037882	ENSSSCG00000029661	CASR (ENSSSCG00000011878) #15	CD86 (ENSSSCG00000011877) #16	ILDR1 (ENSSSCG00000025436) #17	SLC15A2 (ENSSSCG00000030305) #18	EAF2 (ENSSSCG00000011880) #19	IQCB1 (ENSSSCG00000011881) #20	GOLGB1 (ENSSSCG00000011882) #21	HCLS1 (ENSSSCG00000011884) #22	FBXO40 (ENSSSCG00000011885) #23	ENSSSCG00000035362	POLQ (ENSSSCG00000036613) #24	STXBP5L (ENSSSCG00000039888) #26	ENSSSCG00000055930	GTF2E1 (ENSSSCG00000063377) #30	RABL3 (ENSSSCG00000035258) #31	HGD (ENSSSCG00000021227) #32	NDUFB4 (ENSSSCG00000031913) #35	FSTL1 (ENSSSCG00000039426) #36	LRRC58 (ENSSSCG00000034616)	ENSSSCG00000059521	GPR156 (ENSSSCG00000011888)	GSK3B (ENSSSCG00000011889)	NR1I2 (ENSSSCG00000011890)
Chacoan peccary	MODERN SPECIES	944	ENSCWAG00000021574	DTX3L (ENSCWAG00000021586) #8	PARP9 (ENSCWAG00000021593)	KPNA1 (ENSCWAG00000021602) #9	WDR5B (ENSCWAG00000021606) #10	FAM162A (ENSCWAG00000021610) #11	MIX23 (ENSCWAG00000021615) #12	ENSCWAG00000021622 #14	CASR (ENSCWAG00000021630) #15	CD86 (ENSCWAG00000021646) #16	ILDR1 (ENSCWAG00000021661) #17	SLC15A2 (ENSCWAG00000021676) #18	EAF2 (ENSCWAG00000021684) #19	IQCB1 (ENSCWAG00000021689) #20	GOLGB1 (ENSCWAG00000021695) #21	ENSCWAG00000021699 #22	FBXO40 (ENSCWAG00000021700) #23	POLQ (ENSCWAG00000021704) #24	ENSCWAG00000021711	STXBP5L (ENSCWAG00000011896) #26	GTF2E1 (ENSCWAG00000014156) #30	RABL3 (ENSCWAG00000014195) #31	HGD (ENSCWAG00000014292) #32	NDUFB4 (ENSCWAG00000014423) #35	FSTL1 (ENSCWAG00000014472) #36	LRRC58 (ENSCWAG00000014577)	GPR156 (ENSCWAG00000014620)	GSK3B (ENSCWAG00000014772)	NR1I2 (ENSCWAG00000014829)	CFAP91 (ENSCWAG00000014977)	COX17 (ENSCWAG00000015015)
Atlantogenata	ANCESTRAL SPECIES	19	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Afrotheria	ANCESTRAL SPECIES	17	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Afrotheria_a	ANCESTRAL SPECIES	16	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d #8	ENSGT00940000158837	ENSGT01050000244950.a.a.a #9	ENSGT00940000154143.f #10	ENSGT00640000091497.a #11	ENSGT00390000011053 #12	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Elephant	MODERN SPECIES	261	ENSLAFG00000028871 #8	ENSLAFG00000017413 #8	PARP9 (ENSLAFG00000017406)	KPNA1 (ENSLAFG00000002804) #9	WDR5B (ENSLAFG00000016063) #10	FAM162A (ENSLAFG00000016057) #11	MIX23 (ENSLAFG00000016049) #12	CSTA (ENSLAFG00000016046) #14	CASR (ENSLAFG00000007493) #15	ENSLAFG00000010871 #16	ILDR1 (ENSLAFG00000015278) #17	SLC15A2 (ENSLAFG00000015265) #18	EAF2 (ENSLAFG00000014878) #19	IQCB1 (ENSLAFG00000014875) #20	GOLGB1 (ENSLAFG00000014857) #21	HCLS1 (ENSLAFG00000014847) #22	FBXO40 (ENSLAFG00000008444) #23	ARGFX (ENSLAFG00000027648)	POLQ (ENSLAFG00000011574) #24	ENSLAFG00000028209	STXBP5L (ENSLAFG00000005764) #26	GTF2E1 (ENSLAFG00000009912) #30	RABL3 (ENSLAFG00000003711) #31	HGD (ENSLAFG00000003707) #32	NDUFB4 (ENSLAFG00000021459) #35	FSTL1 (ENSLAFG00000017756) #36	ENSLAFG00000031210 #37	LRRC58 (ENSLAFG00000017752)	GPR156 (ENSLAFG00000013634)	GSK3B (ENSLAFG00000007833)	NR1I2 (ENSLAFG00000007829)
Hyrax	MODERN SPECIES	4674															GOLGB1 (ENSPCAG00000005295) #21	HCLS1 (ENSPCAG00000005184) #22	FBXO40 (ENSPCAG00000005148) #23
Tenrec	MODERN SPECIES	7182																HCLS1 (ENSETEG00000000660) #22
Xenarthra	ANCESTRAL SPECIES	49													ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00730000111572	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #26	ENSGT00390000016696 #30	ENSGT00390000007467 #31	ENSGT00390000004601 #32	ENSGT00390000007133 #35	ENSGT00940000157784 #36	ENSGT00940000163036 #37	ENSGT00940000156556	ENSGT00940000159755	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024
Sloth	MODERN SPECIES	6479															GOLGB1 (ENSCHOG00000011909) #21	ENSCHOG00000011892 #22
Armadillo	MODERN SPECIES	4198													EAF2 (ENSDNOG00000042536) #19	IQCB1 (ENSDNOG00000018398) #20	GOLGB1 (ENSDNOG00000044840) #21	HCLS1 (ENSDNOG00000049207) #22	FBXO40 (ENSDNOG00000048461) #23	ARGFX (ENSDNOG00000031231)	ENSDNOG00000048437	POLQ (ENSDNOG00000009810) #24	STXBP5L (ENSDNOG00000008810) #26	GTF2E1 (ENSDNOG00000046763) #30	RABL3 (ENSDNOG00000008174) #31	HGD (ENSDNOG00000023792) #32	NDUFB4 (ENSDNOG00000035843) #35	ENSDNOG00000041310	FSTL1 (ENSDNOG00000038834) #36	ENSDNOG00000033916 #37	LRRC58 (ENSDNOG00000031178)	GPR156 (ENSDNOG00000036453)	GSK3B (ENSDNOG00000006774)
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000163036 #37	ENSGT00940000157784 #36	ENSGT00390000007133 #35	ENSGT00390000004601 #32	ENSGT00390000007467 #31	ENSGT00390000016696 #30	ENSGT00950000182906.b.b #26	ENSGT00940000158694 #24	ENSGT00940000156507.f.a #18	ENSGT00940000156507.e #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00950000183058.A.b #17	ENSGT00940000161500 #16	ENSGT00940000157596 #15	ENSGT00940000155717 #14	ENSGT00390000011053 #12	ENSGT00640000091497.a #11	ENSGT01050000244950.a.a.a #9	ENSGT00940000154311.a.b.i	ENSGT00940000154578.A.d #8	ENSGT00940000154311.a.a.a.b	ENSGT00940000158837	ENSGT00940000154311.a.b.h	ENSGT00940000159893	ENSGT01030000234625.D
Opossum	DUPLICATION
Opossum	MODERN SPECIES	3	LRRC58 (ENSMODG00000018222)	ENSMODG00000041933 #37	FSTL1 (ENSMODG00000018227) #36	NDUFB4 (ENSMODG00000051610) #35	HGD (ENSMODG00000018230) #32	RABL3 (ENSMODG00000018232) #31	GTF2E1 (ENSMODG00000018233) #30	STXBP5L (ENSMODG00000018243) #26	POLQ (ENSMODG00000018252) #24	ENSMODG00000029412 #18	SLC15A2 (ENSMODG00000018269) #18	EAF2 (ENSMODG00000018271) #19	ENSMODG00000018272 #20	ENSMODG00000050649	GOLGB1 (ENSMODG00000018274) #21	ENSMODG00000037338 #22	ENSMODG00000018280 #22	FBXO40 (ENSMODG00000018286) #23	ILDR1 (ENSMODG00000018288) #17	ENSMODG00000025108 #16	CASR (ENSMODG00000018291) #15	ENSMODG00000042754 #14	ENSMODG00000042527 #14	MIX23 (ENSMODG00000018298) #12	FAM162A (ENSMODG00000018300) #11	KPNA1 (ENSMODG00000018306) #9	ENSMODG00000018308	ENSMODG00000018311 #8	ENSMODG00000048959	ENSMODG00000018313	ENSMODG00000018318
Opossum	MODERN SPECIES	3	ENSMODG00000041933 #37	FSTL1 (ENSMODG00000018227) #36	NDUFB4 (ENSMODG00000051610) #35	HGD (ENSMODG00000018230) #32	RABL3 (ENSMODG00000018232) #31	GTF2E1 (ENSMODG00000018233) #30	STXBP5L (ENSMODG00000018243) #26	POLQ (ENSMODG00000018252) #24	ENSMODG00000029412 #18	SLC15A2 (ENSMODG00000018269) #18	EAF2 (ENSMODG00000018271) #19	ENSMODG00000018272 #20	ENSMODG00000050649	GOLGB1 (ENSMODG00000018274) #21	ENSMODG00000037338 #22	ENSMODG00000018280 #22	FBXO40 (ENSMODG00000018286) #23	ILDR1 (ENSMODG00000018288) #17	ENSMODG00000025108 #16	CASR (ENSMODG00000018291) #15	ENSMODG00000042754 #14	ENSMODG00000042527 #14	MIX23 (ENSMODG00000018298) #12	FAM162A (ENSMODG00000018300) #11	KPNA1 (ENSMODG00000018306) #9	ENSMODG00000018308	ENSMODG00000018311 #8	ENSMODG00000048959	ENSMODG00000018313	ENSMODG00000018318	HSPBAP1 (ENSMODG00000018320)
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000163036 #37	ENSGT00940000157784 #36	ENSGT00390000007133 #35	ENSGT00390000004601 #32	ENSGT00390000007467 #31	ENSGT00390000016696 #30	ENSGT00950000182906.b.b #26	ENSGT00940000158694 #24	ENSGT00940000156507.e #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00950000183058.A.b #17	ENSGT00940000161500 #16	ENSGT00940000157596 #15	ENSGT00940000155717 #14	ENSGT00390000011053 #12	ENSGT00640000091497.a #11	ENSGT01050000244950.a.a.a #9	ENSGT00940000154311.a.b.i	ENSGT00940000154578.A.d.l.a #8	ENSGT00940000154311.a.a.a.b	ENSGT00940000158837	ENSGT00940000154311.a.b.h	ENSGT00940000159893	ENSGT01030000234625.D
Diprotodontia	ANCESTRAL SPECIES	23	ENSGT00940000161118	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784 #36	ENSGT00390000007133 #35	ENSGT00390000004601 #32	ENSGT00390000007467 #31	ENSGT00390000016696 #30	ENSGT00950000182906.b.b #26	ENSGT00940000158694 #24	ENSGT00940000156507.e #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00950000183058.A.b #17	ENSGT00940000161500 #16	ENSGT00940000157596 #15	ENSGT00940000155717 #14	ENSGT00390000011053 #12	ENSGT00640000091497.a #11	ENSGT01050000244950.a.a.a #9	ENSGT00940000154311.a.b.i	ENSGT00940000154578.A.d.l.a #8	ENSGT00940000158837	ENSGT00940000154311.a.b.h	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712
Diprotodontia_a	ANCESTRAL SPECIES	24	ENSGT00940000161118	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784 #36	ENSGT00390000007133 #35	ENSGT00390000004601 #32	ENSGT00390000007467 #31	ENSGT00390000016696 #30	ENSGT00950000182906.b.b #26	ENSGT00940000158694 #24	ENSGT00940000156507.e #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00950000183058.A.b #17	ENSGT00940000161500 #16	ENSGT00940000157596 #15	ENSGT00940000155717 #14	ENSGT00390000011053 #12	ENSGT00640000091497.a #11	ENSGT01050000244950.a.a.a #9	ENSGT00940000154311.a.b.i	ENSGT00940000154578.A.d.l.a #8	ENSGT00940000158837	ENSGT00940000154311.a.b.h	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712
Common wonbat	MODERN SPECIES	1139				LRRC58 (ENSVURG00010002989)	FSTL1 (ENSVURG00010003007) #36	NDUFB4 (ENSVURG00010003045) #35	HGD (ENSVURG00010003059) #32	RABL3 (ENSVURG00010003095) #31	GTF2E1 (ENSVURG00010003107) #30	STXBP5L (ENSVURG00010003246) #26	POLQ (ENSVURG00010005387) #24	SLC15A2 (ENSVURG00010005424) #18	EAF2 (ENSVURG00010005454) #19	IQCB1 (ENSVURG00010005469) #20	GOLGB1 (ENSVURG00010005530) #21	HCLS1 (ENSVURG00010005587) #22	FBXO40 (ENSVURG00010005637) #23	ILDR1 (ENSVURG00010005651) #17	ENSVURG00010005658	ENSVURG00010005663 #16	CASR (ENSVURG00010005673) #15	ENSVURG00010005690	ENSVURG00010005701 #14	ENSVURG00010005708 #14	MIX23 (ENSVURG00010005713) #12	FAM162A (ENSVURG00010005728) #11	KPNA1 (ENSVURG00010005741) #9	ENSVURG00010005770	ENSVURG00010005836 #8	ENSVURG00010005855	ENSVURG00010005867
koala	MODERN SPECIES	23	ENSPCIG00000018939	FSTL1 (ENSPCIG00000018936) #36	NDUFB4 (ENSPCIG00000018934) #35	HGD (ENSPCIG00000018926) #32	RABL3 (ENSPCIG00000018922) #31	GTF2E1 (ENSPCIG00000018918) #30	ENSPCIG00000018915	STXBP5L (ENSPCIG00000031798) #26	ENSPCIG00000028379	ENSPCIG00000004424 #18	SLC15A2 (ENSPCIG00000004444) #18	EAF2 (ENSPCIG00000004463) #19	IQCB1 (ENSPCIG00000004475) #20	ENSPCIG00000034216	GOLGB1 (ENSPCIG00000004508) #21	HCLS1 (ENSPCIG00000002239) #22	FBXO40 (ENSPCIG00000002235) #23	ILDR1 (ENSPCIG00000014527) #17	ENSPCIG00000025695 #16	CASR (ENSPCIG00000025703) #15	ENSPCIG00000025712 #14	MIX23 (ENSPCIG00000025713) #12	FAM162A (ENSPCIG00000025717) #11	KPNA1 (ENSPCIG00000025751) #9	ENSPCIG00000001736 #8	ENSPCIG00000001679	ENSPCIG00000013374	HSPBAP1 (ENSPCIG00000015608)	SLC49A4 (ENSPCIG00000015612)	SEMA5B (ENSPCIG00000015616)	PDIA5 (ENSPCIG00000006526)
Wallaby	MODERN SPECIES	8709																HCLS1 (ENSMEUG00000011876) #22
Tasmanian devil	MODERN SPECIES	2	GSK3B (ENSSHAG00000025881)	GPR156 (ENSSHAG00000025388)	LRRC58 (ENSSHAG00000025780)	ENSSHAG00000023019 #37	FSTL1 (ENSSHAG00000010151) #36	ENSSHAG00000026702 #35	HGD (ENSSHAG00000011807) #32	RABL3 (ENSSHAG00000012233) #31	GTF2E1 (ENSSHAG00000016161) #30	STXBP5L (ENSSHAG00000000906) #26	ENSSHAG00000006984 #24	ENSSHAG00000008697 #18	EAF2 (ENSSHAG00000009389) #19	IQCB1 (ENSSHAG00000028307) #20	GOLGB1 (ENSSHAG00000010403) #21	HCLS1 (ENSSHAG00000010815) #22	ENSSHAG00000011111 #23	ENSSHAG00000011527 #17	ENSSHAG00000012067 #16	CASR (ENSSHAG00000012704) #15	CSTA (ENSSHAG00000013559) #14	ENSSHAG00000021983 #12	ENSSHAG00000031890 #11	ENSSHAG00000014144 #9	ENSSHAG00000000087 #8	ENSSHAG00000032163	ENSSHAG00000011858	ENSSHAG00000006037	ENSSHAG00000022497	ENSSHAG00000013508	ENSSHAG00000030467
Sauria	ANCESTRAL SPECIES	4	ENSGT00950000182981.b.f.a.f	ENSGT01030000235325	ENSGT00940000157206	ENSGT00940000159484	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00390000013208	ENSGT00390000003224.B	ENSGT00940000160243	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000173712	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000162777.a	ENSGT00940000162777.b	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT00940000165068	ENSGT00940000156265.w	ENSGT01060000248595.b.a.a	ENSGT01030000234937.b	ENSGT00940000161995
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00950000182981.b.f.a.f	ENSGT01030000235325	ENSGT00940000157206	ENSGT00940000159484	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00390000013208	ENSGT00390000003224.B	ENSGT00940000160243	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000162777.a	ENSGT00940000162777.b	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT00940000156265.w	ENSGT01060000248595.b.a.a	ENSGT01030000234937.b	ENSGT00940000161995
Cryptodira	ANCESTRAL SPECIES	58														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162777.a	ENSGT00940000162777.b	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT00940000156265.w	ENSGT01060000248595.b.a.a	ENSGT01030000234937.b	ENSGT00940000162027	ENSGT00940000154156.d
Chinese turtle	MODERN SPECIES	888														ENSPSIG00000015183	GOLGB1 (ENSPSIG00000015160) #21	HCLS1 (ENSPSIG00000014923) #22	ENSPSIG00000001583	NME6 (ENSPSIG00000014658)	ENSPSIG00000014041	ENSPSIG00000013914
Testudinoidea	ANCESTRAL SPECIES	47														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162777.a	ENSGT00940000162777.b	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT00940000156265.w	ENSGT01060000248595.b.a.a	ENSGT01030000234937.b	ENSGT00940000161477	ENSGT00940000154156.d
Testudinidae	ANCESTRAL SPECIES	79														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162777.a	ENSGT00940000162777.b	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00940000161814.b.a.a.b.a	ENSGT00940000154156.d	ENSGT00530000064743	ENSGT00940000164784	ENSGT00730000111591
Abingdon island giant tortoise	MODERN SPECIES	2244															GOLGB1 (ENSCABG00000002642) #21	ENSCABG00000002645 #22	NME6 (ENSCABG00000002651)	ENSCABG00000002652	ENSCABG00000002653	ENSCABG00000002656	ARSA (ENSCABG00000002658)
Goode s thornscrub tortoise	MODERN SPECIES															ENSGEVG00005001829	GOLGB1 (ENSGEVG00005001745) #21	HCLS1 (ENSGEVG00005001702) #22	NME6 (ENSGEVG00005001683)	ENSGEVG00005001663	ENSGEVG00005001620	ENSGEVG00005001577	ARSA (ENSGEVG00005001554)	ENSGEVG00005001513	ENSGEVG00005001477	ENSGEVG00005001466	ENSGEVG00005001457	CHKB (ENSGEVG00005001366)	CPT1B (ENSGEVG00005001194)	ENSGEVG00005001159	ENSGEVG00005001128	ENSGEVG00005001102	GARIN1A (ENSGEVG00005001068)
Emydidae	ANCESTRAL SPECIES	66														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162777.a	ENSGT00940000162777.b	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT00940000156265.w	ENSGT01060000248595.b.a.a	ENSGT01030000234937.b	ENSGT00940000161477	ENSGT00940000154156.d
painted turtle	MODERN SPECIES	961													ENSCPBG00000011782	ENSCPBG00000011772	GOLGB1 (ENSCPBG00000011752) #21	ENSCPBG00000011738 #22	ENSCPBG00000011733	NME6 (ENSCPBG00000011730)	ENSCPBG00000011721	ENSCPBG00000011715	ENSCPBG00000011711	ARSA (ENSCPBG00000011707)
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	915																ENSTMTG00000012720 #22
Three-toed box turtle	MODERN SPECIES	105												ENSTMTG00000011997	GOLGB1 (ENSTMTG00000012067) #21	ENSTMTG00000012167	ENSTMTG00000012212	ENSTMTG00000012228 #22	ENSTMTG00000012252	ENSTMTG00000012274	ARSA (ENSTMTG00000012340)	ENSTMTG00000012378	SHANK3 (ENSTMTG00000012397)	MAPK8IP2 (ENSTMTG00000012530)	CPT1B (ENSTMTG00000012766)	ENSTMTG00000012803	ENSTMTG00000012816	GARIN1B (ENSTMTG00000012845)	IMPDH1 (ENSTMTG00000012969)	ENSTMTG00000013026	PRRT4 (ENSTMTG00000013033)	ENSTMTG00000013043	RBM28 (ENSTMTG00000013082)
Archosauria	ANCESTRAL SPECIES	4	ENSGT00390000006835	ENSGT00640000091917	ENSGT00400000022095.a	ENSGT00950000182981.b.f.a.f	ENSGT00940000157206	ENSGT00940000159484	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000153588.a.b	ENSGT00390000013208	ENSGT00940000165748	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000162777.a	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00940000161995	ENSGT00390000009250	ENSGT00390000004323.a	ENSGT00390000014443
Aves	ANCESTRAL SPECIES	1	ENSGT00390000006835	ENSGT00640000091917	ENSGT00400000022095.a	ENSGT00950000182981.b.f.a.f	ENSGT00940000157206	ENSGT00940000159484	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000153588.a.b	ENSGT00390000013208	ENSGT00940000165748	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000162777.a	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT00940000161995	ENSGT00390000009250	ENSGT00390000004323.a	ENSGT00390000014443
African ostrich	MODERN SPECIES	246														ENSSCUG00000003313	GOLGB1 (ENSSCUG00000003315) #21	HCLS1 (ENSSCUG00000003316) #22	ENSSCUG00000003317	ENSSCUG00000003318	ENSSCUG00000003319	ARSA (ENSSCUG00000003320)	ENSSCUG00000003324	SHANK3 (ENSSCUG00000003332)
Neognathae	ANCESTRAL SPECIES	3														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162430	ENSGT00960000189403	ENSGT00940000157610	ENSGT00940000162777.a	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT01030000234937.b	ENSGT00940000161995	ENSGT00390000009250
Galloanserae	ANCESTRAL SPECIES	3														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000162777.a	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00950000182939.a.b.a	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000161709	ENSGT00940000165441	ENSGT00940000156878	ENSGT00940000153772.A
Phasianidae	ANCESTRAL SPECIES													ENSGT00940000164342	ENSGT00940000162705.a.b.g	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000162777.a.j	ENSGT00940000157610	ENSGT00940000162777.a.i	ENSGT00940000153561.b.b	ENSGT00940000161709	ENSGT00940000165441	ENSGT00940000153772.A	ENSGT00390000005529.b	ENSGT00390000009899.b	ENSGT00940000155263	ENSGT00940000154380.a
Japanese quail	MODERN SPECIES											ENSCJPG00005000042	ENSCJPG00005000168	ENSCJPG00005000202	ENSCJPG00005000211	ENSCJPG00005000221	GOLGB1 (ENSCJPG00005000232) #21	HCLS1 (ENSCJPG00005000240) #22	ENSCJPG00005000246	NME6 (ENSCJPG00005000256)	ENSCJPG00005000259	ENSCJPG00005000266	ARSA (ENSCJPG00005000274)	ENSCJPG00005000277	ENSCJPG00005000295	ENSCJPG00005000305	ENSCJPG00005000310	ENSCJPG00005000311	ENSCJPG00005000316	GCC1 (ENSCJPG00005000323)	DENND6B (ENSCJPG00005000338)	PPP6R2 (ENSCJPG00005000356)	SBF1 (ENSCJPG00005000380)
Phasianidae_b	ANCESTRAL SPECIES	53											ENSGT00940000164342	ENSGT00940000162705.a.b.g.a.a.b	ENSGT00940000162705.a.b.g.a.a.a	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000162777.a.j	ENSGT00940000157610	ENSGT00940000162777.a.i	ENSGT00940000153561.b.b
Chicken	MODERN SPECIES		ENSGALG00010007137	ENSGALG00010007160	ENSGALG00010007182	ENSGALG00010007165	ENSGALG00010007320	ENSGALG00010007230	ENSGALG00010007339	ENSGALG00010007115	ENSGALG00010007387	ENSGALG00010007398	TYMP (ENSGALG00010007400)	ENSGALG00010007287	ENSGALG00010007369	ENSGALG00010007405	GOLGB1 (ENSGALG00010007895) #21	HCLS1 (ENSGALG00010007408) #22	ENSGALG00010007415	NME6 (ENSGALG00010007418)	RABL2A (ENSGALG00010007419)	ACR (ENSGALG00010007422)	ARSA (ENSGALG00010007425)	ENSGALG00010007427	SHANK3 (ENSGALG00010007457)	ENSGALG00010007589	ENSGALG00010007591	ENSGALG00010007592	ENSGALG00010006267	ENSGALG00010006271	ARF5 (ENSGALG00010006288)	GCC1 (ENSGALG00010006300)	DENND6B (ENSGALG00010006327)
Turkey	MODERN SPECIES																	ENSMGAG00000002363 #22	ENSMGAG00000002430 #21	ENSMGAG00000002502	ENSMGAG00000002539	ENSMGAG00000018785	ENSMGAG00000002418	ENSMGAG00000010314	ENSMGAG00000021159	ENSMGAG00000017867	ENSMGAG00000009123	ENSMGAG00000023014	ENSMGAG00000018967	ENSMGAG00000018015	ENSMGAG00000002460	ENSMGAG00000005344	ENSMGAG00000001104
Anatidae	ANCESTRAL SPECIES	107														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263570.B	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162777.a	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00950000182939.a.b.a
Pink-footed goose	MODERN SPECIES	310														ENSABRG00000001019	GOLGB1 (ENSABRG00000000911) #21	HCLS1 (ENSABRG00000000781) #22	ENSABRG00000000691	NME6 (ENSABRG00000000686)	ENSABRG00000000365	ARSA (ENSABRG00000000320)	SHANK3 (ENSABRG00000014396)	MAPK8IP2 (ENSABRG00000014376)	CHKB (ENSABRG00000014289)
Duck	MODERN SPECIES	350																HCLS1 (ENSAPLG00000009127) #22	ENSAPLG00000001752	ENSAPLG00000030034	ENSAPLG00000020610
Neognathae_b	ANCESTRAL SPECIES	2														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162777.a	ENSGT00940000162430	ENSGT00960000189403	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT01030000234937.b	ENSGT00940000161995	ENSGT00390000009250
Neognathae_c	ANCESTRAL SPECIES															ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263570.B	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162777.a	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT01020000230860	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT01030000234937.b	ENSGT00940000161995	ENSGT00390000009250	ENSGT00390000004323.a
Golden eagle	MODERN SPECIES	21	CPT1B (ENSACCG00020004256)	CHKB (ENSACCG00020004186)	ENSACCG00020004114	ENSACCG00020004106	MAPK8IP2 (ENSACCG00020004094)	SHANK3 (ENSACCG00020004002)	ENSACCG00020003848	ENSACCG00020003822	ARSA (ENSACCG00020003814)	ENSACCG00020003789	ENSACCG00020003768	NME6 (ENSACCG00020003754)	ENSACCG00020003740	ENSACCG00020003732	GOLGB1 (ENSACCG00020003713) #21	HCLS1 (ENSACCG00020003688) #22
Kakapo	MODERN SPECIES	32												NAA20 (ENSSHBG00005013717)	ENSSHBG00005013727	GOLGB1 (ENSSHBG00005013735) #21	ENSSHBG00005013750	HCLS1 (ENSSHBG00005013832) #22	ENSSHBG00005013857	NME6 (ENSSHBG00005013866)	ENSSHBG00005013872	ARSA (ENSSHBG00005013876)	ENSSHBG00005013888	MAPK8IP2 (ENSSHBG00005013898)	SHANK3 (ENSSHBG00005013916)	ENSSHBG00005013940	ENSSHBG00005013972	ENSSHBG00005013987	CPT1B (ENSSHBG00005014019)	CHKB (ENSSHBG00005014040)	ODF3B (ENSSHBG00005014046)	SCO2 (ENSSHBG00005014057)	NCAPH2 (ENSSHBG00005014062)
Passeriformes	ANCESTRAL SPECIES	52														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162777.a.b.b.a	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00390000013208	ENSGT00940000153588.a.b	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.c	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00510000047270	ENSGT00940000159260
Great tit	MODERN SPECIES	278												ENSPMJG00000000928	ENSPMJG00000000944	ENSPMJG00000000952	GOLGB1 (ENSPMJG00000000970) #21	HCLS1 (ENSPMJG00000000982) #22	OR10P1 (ENSPMJG00000000994)	NME6 (ENSPMJG00000001027)	ENSPMJG00000001048	ENSPMJG00000001059	ATP6V1F (ENSPMJG00000001066)	ENSPMJG00000001069	ENSPMJG00000001073	OPN1SW (ENSPMJG00000001095)	CALU (ENSPMJG00000001098)	IRF5 (ENSPMJG00000001099)
Passeriformes_d	ANCESTRAL SPECIES	48														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162777.a.b.b.a	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00390000013208	ENSGT00940000153588.a.b	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.c	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00510000047270	ENSGT00940000159260
Flycatcher	MODERN SPECIES	226													ENSFALG00000010561	ENSFALG00000010562	ENSFALG00000010568 #21	ENSFALG00000023997 #22	ENSFALG00000010574	ENSFALG00000024306	ENSFALG00000024055	ENSFALG00000028534	ENSFALG00000010581	ENSFALG00000025089	ENSFALG00000010598	ATP6V1F (ENSFALG00000023295)	ENSFALG00000027211	ENSFALG00000010616	OPN1SW (ENSFALG00000010652)	CALU (ENSFALG00000010657)	ENSFALG00000027095	ENSFALG00000010667
Passeriformes_g	ANCESTRAL SPECIES	61														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162777.a.b.b.a	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00390000013208	ENSGT00940000153588.a.b	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.c	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00510000047270	ENSGT00940000159260
Passeroidea	ANCESTRAL SPECIES	64														ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162777.a.b.b.a	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00390000013208	ENSGT00940000153588.a.b	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.c	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00510000047270	ENSGT00940000159260
Zebra finch	MODERN SPECIES	72							ENSTGUG00000026944	ENSTGUG00000026707	ENSTGUG00000026101	ENSTGUG00000022869	ENSTGUG00000027747	ENSTGUG00000022849	ENSTGUG00000019562	ENSTGUG00000026659	GOLGB1 (ENSTGUG00000029414) #21	HCLS1 (ENSTGUG00000015985) #22	OR10P1 (ENSTGUG00000016018)	NME6 (ENSTGUG00000016027)	ENSTGUG00000024637	ENSTGUG00000028652	ATP6V1F (ENSTGUG00000028137)	ENSTGUG00000016061	OPN1SW (ENSTGUG00000025790)	ENSTGUG00000027720	ENSTGUG00000019852	ENSTGUG00000021573	IMPDH1 (ENSTGUG00000029733)	ENSTGUG00000028384	RBM28 (ENSTGUG00000021871)	LEP (ENSTGUG00000022426)	ENSTGUG00000026385
Common canary	MODERN SPECIES	47	MEST (ENSSCAG00000012327)	ENSSCAG00000012319	CEP41 (ENSSCAG00000012313)	ENSSCAG00000012292	CPA2 (ENSSCAG00000012282)	TMEM209 (ENSSCAG00000012279)	KLHDC10 (ENSSCAG00000012276)	ENSSCAG00000012274	TNPO3 (ENSSCAG00000012270)	IRF5 (ENSSCAG00000012264)	CALU (ENSSCAG00000012259)	FLNC (ENSSCAG00000009377)	ENSSCAG00000008726	ENSSCAG00000008720	GOLGB1 (ENSSCAG00000008694) #21	HCLS1 (ENSSCAG00000008669) #22	ENSSCAG00000008651	ENSSCAG00000008646	ENSSCAG00000008616	NRF1 (ENSSCAG00000008598)	ENSSCAG00000008594	STRIP2 (ENSSCAG00000008298)	AHCYL2 (ENSSCAG00000007658)
Medium ground finch	MODERN SPECIES	374														ENSGFOG00000014345	GOLGB1 (ENSGFOG00000014343) #21	HCLS1 (ENSGFOG00000014339) #22	ENSGFOG00000014335	ENSGFOG00000014328	ENSGFOG00000014323	ENSGFOG00000014320	FLNC (ENSGFOG00000012489)	OPN1SW (ENSGFOG00000012265)	CALU (ENSGFOG00000012260)	ENSGFOG00000012257	TNPO3 (ENSGFOG00000012244)
Lepidosauria	ANCESTRAL SPECIES	95									ENSGT00940000161995.s	ENSGT00390000009250	ENSGT00390000014443	ENSGT00530000063702.a	ENSGT00390000016211	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263570.B.c.b	ENSGT00940000160284	ENSGT00940000156551	ENSGT00940000162430	ENSGT00940000162777.a	ENSGT00940000162777.b	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a	ENSGT01030000234937.b	ENSGT00730000111591	ENSGT00550000074976
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000157206	ENSGT00940000159484	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00390000013208	ENSGT00390000003224.B	ENSGT00390000014443	ENSGT00530000063702.a	ENSGT00390000016211	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000173712	ENSGT00940000156551	ENSGT00940000162777.a.l	ENSGT00940000162430.a.a	ENSGT00960000189403.b	ENSGT00940000162777.a.k.a.a.a	ENSGT00940000162430.a.b	ENSGT00940000162777.a.k.b	ENSGT00940000162777.b	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a
Toxicofera	ANCESTRAL SPECIES	32	ENSGT00950000182981.b.f.a.f	ENSGT00950000182981.b.f.a.e.a	ENSGT00940000157206	ENSGT00940000159484	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00390000013208	ENSGT00390000003224.B	ENSGT00530000063702.a	ENSGT00390000016211	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000173712	ENSGT00940000156551	ENSGT00940000162777.a.l	ENSGT00940000162430.a.a	ENSGT00940000162777.a.k.a.a.b	ENSGT00940000162777.a.k.a.a.a	ENSGT00940000162430.a.b	ENSGT00940000162777.a.k.b	ENSGT00940000162777.b	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a	ENSGT01060000248595.b.a.a
Lizard	MODERN SPECIES	1812																ENSACAG00000006894 #22
Elapidae	ANCESTRAL SPECIES	33	ENSGT00950000182981.b.f.a.e.a	ENSGT00940000157206	ENSGT00940000159484	ENSGT00530000063347.B	ENSGT00940000159926.a	ENSGT01010000222360.E.c.k	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.c.l	ENSGT00940000153588.a.b	ENSGT00390000013208	ENSGT00390000003224.B	ENSGT00950000182946.cb	ENSGT00530000063702.a	ENSGT00390000016211	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000173712	ENSGT00940000156551	ENSGT00940000162777.a.l	ENSGT00940000162430.a.a	ENSGT00940000162777.a.k.a.a.b	ENSGT00940000162777.a.k.a.a.a	ENSGT00940000162430.a.b	ENSGT00940000162777.b.b	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461.b	ENSGT00940000171666	ENSGT00940000160461.a	ENSGT00390000003014	ENSGT00950000182939.a.b.a
Indian cobra	MODERN SPECIES	6	ENSNNAG00000008012	ENSNNAG00000008061	FLNC (ENSNNAG00000008778)	ATP6V1F (ENSNNAG00000017974)	ATP6V1FNB (ENSNNAG00000017978)	ENSNNAG00000017983	ENSNNAG00000017990	ENSNNAG00000017994	ENSNNAG00000017998	ENSNNAG00000018003	ENSNNAG00000018011	ENSNNAG00000018013	ENSNNAG00000018017	MIOX (ENSNNAG00000018018)	GOLGB1 (ENSNNAG00000018020) #21	ENSNNAG00000018022 #22	ENSNNAG00000018026	ENSNNAG00000018029	ENSNNAG00000018033	ENSNNAG00000018037	ENSNNAG00000018040	ENSNNAG00000018042	ENSNNAG00000018045	ENSNNAG00000018049	ENSNNAG00000018053	ENSNNAG00000018057	ENSNNAG00000018060	ENSNNAG00000018065	ENSNNAG00000018068	ENSNNAG00000018072	ENSNNAG00000018076
Elapidae_a	ANCESTRAL SPECIES	394															ENSGT00940000178303	ENSGT00940000158997 #22
Blue-lipped sea krait	MODERN SPECIES	7782																ENSLLTG00000016652 #22
Acanthophiinae	ANCESTRAL SPECIES	364															ENSGT00940000178303	ENSGT00940000158997 #22
Eastern brown snake	MODERN SPECIES	594															ENSPTXG00000015892	ENSPTXG00000015891 #22
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	860																ENSNSUG00000005310 #22
Mainland tiger snake	MODERN SPECIES	858																ENSNSUG00000005307 #22
Laterata	ANCESTRAL SPECIES	55										ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00530000063702.a	ENSGT00390000016211	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01100000263561.A.j.a.b	ENSGT00960000189467	ENSGT00940000156551	ENSGT00940000162430.b	ENSGT00940000162430.a.a	ENSGT00960000189403.b	ENSGT00940000162777.a.k.a.a.a	ENSGT00940000162430.a.b	ENSGT00940000162777.a.k.b	ENSGT00940000162777.b	ENSGT00940000157610	ENSGT00940000153561.b.b	ENSGT00940000160461	ENSGT00390000003014	ENSGT00950000182939.a.b.a
Common wall lizard	MODERN SPECIES	1	SND1 (ENSPMRG00000012798)	PAX4 (ENSPMRG00000012791)	FSCN3 (ENSPMRG00000012785)	ENSPMRG00000012783	GCC1 (ENSPMRG00000012775)	ENSPMRG00000012771	ENSPMRG00000012760	ENSPMRG00000014707	SCO2 (ENSPMRG00000014699)	NCAPH2 (ENSPMRG00000014678)	LMF2 (ENSPMRG00000014663)	MIOX (ENSPMRG00000014646)	ENSPMRG00000014631	ENSPMRG00000014625	GOLGB1 (ENSPMRG00000014613) #21	HCLS1 (ENSPMRG00000014602) #22	ENSPMRG00000014595	ENSPMRG00000014585	ENSPMRG00000014578	ENSPMRG00000014574	ENSPMRG00000014571	ENSPMRG00000014566	ENSPMRG00000014562	ENSPMRG00000014557	ENSPMRG00000014549	ENSPMRG00000014542	ENSPMRG00000014539	CPT1B (ENSPMRG00000014532)	ENSPMRG00000014528	ENSPMRG00000014527	CHKB (ENSPMRG00000014521)
Argentine black and white tegu	MODERN SPECIES	6	ENSSMRG00000013578	ENSSMRG00000013580	ENSSMRG00000013581	ENSSMRG00000013583	ENSSMRG00000013584	ENSSMRG00000013585	TYMP (ENSSMRG00000013622)	ENSSMRG00000013623	ENSSMRG00000013624	SCO2 (ENSSMRG00000013625)	NCAPH2 (ENSSMRG00000013626)	LMF2 (ENSSMRG00000013630)	MIOX (ENSSMRG00000013633)	ENSSMRG00000013634	GOLGB1 (ENSSMRG00000013635) #21	HCLS1 (ENSSMRG00000013636) #22
tuatara	MODERN SPECIES	437	ATP6V1FNB (ENSSPUG00000007269)	ATP6V1F (ENSSPUG00000007261)	FLNC (ENSSPUG00000007046)	ENSSPUG00000006999	OPN1SW (ENSSPUG00000006986)	CALU (ENSSPUG00000006976)	ODF3B (ENSSPUG00000006965)	TYMP (ENSSPUG00000006955)	ENSSPUG00000006950	NCAPH2 (ENSSPUG00000006882)	MIOX (ENSSPUG00000006856)	LMF2 (ENSSPUG00000006837)	ENSSPUG00000006751	ENSSPUG00000006737 #21	ENSSPUG00000006730 #21	ENSSPUG00000006718 #22	ENSSPUG00000006710
Anura	ANCESTRAL SPECIES	5	ENSGT00390000011159	ENSGT00940000153731.a.b	ENSGT00390000013422	ENSGT00940000156738	ENSGT01100000265994	ENSGT00390000013049	ENSGT00940000155357	ENSGT00940000158708.b	ENSGT00940000158487	ENSGT00940000158484	ENSGT01100000263505.b.b.b.a.a.b	ENSGT00390000017365.b.a	ENSGT01030000235651	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000154447	ENSGT00940000161011.j	ENSGT01060000248595.b.a.a	ENSGT00950000182939.a.b.a	ENSGT00390000003014	ENSGT00940000160461	ENSGT00940000153561.b.b	ENSGT00940000157610	ENSGT00940000162777.e	ENSGT00940000162777.f	ENSGT00940000156551	ENSGT00940000160284	ENSGT00940000161995	ENSGT00390000009250	ENSGT00390000004323.a
Leishan spiny toad	MODERN SPECIES	6	CHRNA3 (ENSLLEG00000009388)	ENSLLEG00000009474	ENSLLEG00000009635	ENSLLEG00000010087	ENSLLEG00000010228	ENSLLEG00000010250	HMGCL (ENSLLEG00000010271)	ENSLLEG00000010404	ENSLLEG00000010472	ENSLLEG00000010519	ENSLLEG00000010671	ENSLLEG00000010725	ENSLLEG00000010870	GOLGB1 (ENSLLEG00000011139) #21	ENSLLEG00000011241	ENSLLEG00000011312 #22	ENSLLEG00000011602	CPT1B (ENSLLEG00000011652)	ENSLLEG00000011906	CHKB (ENSLLEG00000012091)	ENSLLEG00000012215	ENSLLEG00000012259	ENSLLEG00000012294	ENSLLEG00000012339	MAPK8IP2 (ENSLLEG00000012499)	SHANK3 (ENSLLEG00000012581)	ENSLLEG00000012832	ENSLLEG00000012852	ENSLLEG00000012870	ENSLLEG00000012946	ENSLLEG00000004165
Frog	MODERN SPECIES	3	isl2 (ENSXETG00000015323)	etfa (ENSXETG00000015322)	TMEM266 (ENSXETG00000033832)	ENSXETG00000044253	ENSXETG00000043936	fbxo22 (ENSXETG00000030542)	ube2q2 (ENSXETG00000015330)	chrnb4 (ENSXETG00000033968)	ENSXETG00000031723	hmgcl (ENSXETG00000015336)	ENSXETG00000040596	tcaf1 (ENSXETG00000029983)	guca1al (ENSXETG00000015376)	golgb1 (ENSXETG00000033340) #21	ENSXETG00000047176	hcls1 (ENSXETG00000015412) #22	reg1b (ENSXETG00000033573)	reg4 (ENSXETG00000033383)	cpt1b (ENSXETG00000015426)	chkb (ENSXETG00000031132)	ENSXETG00000040953	mapk8ip2 (ENSXETG00000015685)	shank3 (ENSXETG00000015689)	arsa.2 (ENSXETG00000033466)	rabl2b (ENSXETG00000015712)	nme6 (ENSXETG00000015714)	odf3 (ENSXETG00000015719)	tymp (ENSXETG00000015724)	ENSXETG00000049228	ncaph2 (ENSXETG00000023090)	lmf2 (ENSXETG00000023089)
Coelacanth	MODERN SPECIES	1885								ENSLACG00000010469	MAPK8IP2 (ENSLACG00000010022)	ENSLACG00000009399	CHKB (ENSLACG00000008527)	ENSLACG00000008182	CPT1B (ENSLACG00000007127)	guca1a (ENSLACG00000006769)	GOLGB1 (ENSLACG00000005017) #21	hcls1 (ENSLACG00000003364) #22
Actinopterygii	ANCESTRAL SPECIES	315						ENSGT00940000164657	ENSGT00390000017006	ENSGT00530000063554.a	ENSGT00940000154795	ENSGT00940000157862	ENSGT00990000203541.a.a.a.b	ENSGT00390000009380	ENSGT00580000081623	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT01020000230394.e.a.a.a
Neopterygii	ANCESTRAL SPECIES	305						ENSGT00940000164657	ENSGT00390000017006	ENSGT00530000063554.a	ENSGT00940000154795	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.b	ENSGT00390000009380	ENSGT00580000081623	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22
Spotted gar	MODERN SPECIES	674	trabd (ENSLOCG00000015501)	selenoo1 (ENSLOCG00000015499)	mapk12b (ENSLOCG00000015496)	szl (ENSLOCG00000015495)	rint1 (ENSLOCG00000015491)	pus7 (ENSLOCG00000015489)	SRPK2 (ENSLOCG00000015487)	KMT2E (ENSLOCG00000015484)	ENSLOCG00000017899	lhfpl3 (ENSLOCG00000015483)	orc5 (ENSLOCG00000015480)	ENSLOCG00000015479	RELN (ENSLOCG00000015474)	guca1a (ENSLOCG00000015471)	ENSLOCG00000015469 #21	hcls1 (ENSLOCG00000015467) #22	plxnb2b (ENSLOCG00000015461)	TUBGCP6 (ENSLOCG00000015459)	appl2 (ENSLOCG00000015456)	NUAK1 (ENSLOCG00000015451)	ENSLOCG00000015449	slc25a3b (ENSLOCG00000015447)	ENSLOCG00000015446	ENSLOCG00000015433	llph (ENSLOCG00000015432)	PLCZ1 (ENSLOCG00000015427)	ENSLOCG00000015426	plekha5 (ENSLOCG00000015422)	aebp2 (ENSLOCG00000015421)	ENSLOCG00000015420	PDE3A (ENSLOCG00000015415)
Osteoglossocephalai	ANCESTRAL SPECIES	225	ENSGT00940000157821.h.a	ENSGT00940000160821	ENSGT00940000163946	ENSGT00940000155180.b.b	ENSGT00940000157821.g	ENSGT00940000155180.b.a	ENSGT00940000158039	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00580000081623	ENSGT00940000177161	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344
Osteoglossiformes	ANCESTRAL SPECIES	194	ENSGT00950000183113.b.b.c.b.m	ENSGT00390000010825.b	ENSGT00940000160161.e.a.p	ENSGT00940000159401.d.a	ENSGT00940000153414.A	ENSGT00390000010229	ENSGT00940000160821	ENSGT00940000163946	ENSGT00940000155180.b.a	ENSGT00940000158039.e.a	ENSGT00940000157862.y.a	ENSGT00990000203541.a.a.a.a.a	ENSGT00580000081623.r	ENSGT00940000164333.a	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000159982	ENSGT00940000155728.q	ENSGT00940000156628.f	ENSGT01080000257336.b.e.b.a.a.b	ENSGT00390000011863.d.a.a	ENSGT01050000244841.A.b.b.a	ENSGT00390000011239.i	ENSGT00940000158160.k	ENSGT00940000153456.b.a.ib	ENSGT00940000164338	ENSGT00940000158612.f
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	11	ENSSFOG00015025064	GALNT8 (ENSSFOG00015028233)	ndufa9a (ENSSFOG00015010313)	DYRK4 (ENSSFOG00015010360)	zgc:77158 (ENSSFOG00015010400)	FGF6 (ENSSFOG00015024620)	CCND2 (ENSSFOG00015010442)	ENSSFOG00015010455	KDM7A (ENSSFOG00015010477)	ndufb2 (ENSSFOG00015010495)	ENSSFOG00015010526	lhfpl3 (ENSSFOG00015032051)	RELN (ENSSFOG00015010632)	ENSSFOG00015010821	guca1a (ENSSFOG00015010833)	hcls1 (ENSSFOG00015010854) #22	ENSSFOG00015010907	plekha5 (ENSSFOG00015010964)	AEBP2 (ENSSFOG00015011046)	PDE3A (ENSSFOG00015011079)	bcap29 (ENSSFOG00015011117)	gpr22a (ENSSFOG00015011145)	hbp1 (ENSSFOG00015011155)	PRKAR2B (ENSSFOG00015011189)	NAMPT (ENSSFOG00015011238)	ENSSFOG00015026070	ENSSFOG00015011283	znf800a (ENSSFOG00015011351)	GRM8 (ENSSFOG00015006290)	ENSSFOG00015011426	pot1 (ENSSFOG00015011445)
Asian bonytongue	MODERN SPECIES	13	ribc2 (ENSSFOG00015005121)	DYRK4 (ENSSFOG00015005126)	rad51ap1 (ENSSFOG00015005160)	zgc:154077 (ENSSFOG00015005184)	zgc:77158 (ENSSFOG00015031741)	FGF6 (ENSSFOG00015005238)	fgf23 (ENSSFOG00015005246)	tigara (ENSSFOG00015030062)	ccnd2a (ENSSFOG00015026526)	KDM7A (ENSSFOG00015005277)	ENSSFOG00015005303	lhfpl3 (ENSSFOG00015005355)	RELN (ENSSFOG00015005375)	ENSSFOG00015005548	ENSSFOG00015005637 #21	ENSSFOG00015005657 #22	llph (ENSSFOG00015005684)	plekha5 (ENSSFOG00015005726)	aebp2 (ENSSFOG00015005825)	PDE3A (ENSSFOG00015005853)	slco1c1 (ENSSFOG00015005898)	BCAP29 (ENSSFOG00015005923)	dus4l (ENSSFOG00015005943)	COG5 (ENSSFOG00015005970)	ENSSFOG00015006042	PRKAR2B (ENSSFOG00015006059)	pik3cg (ENSSFOG00015006087)	NAMPT (ENSSFOG00015006148)	SYPL1 (ENSSFOG00015027879)	ENSSFOG00015006200	ATXN7L1 (ENSSFOG00015006213)
P. kingsleyae	MODERN SPECIES	219	atp6v1e1b (ENSPKIG00000023959)	GALNT8 (ENSPKIG00000023993)	ndufa9a (ENSPKIG00000024032)	DYRK4 (ENSPKIG00000025621)	ENSPKIG00000025651	FGF6 (ENSPKIG00000000003)	ccnd2b (ENSPKIG00000000012)	KDM7A (ENSPKIG00000000021)	ndufb2 (ENSPKIG00000000032)	ENSPKIG00000000038	lhfpl3 (ENSPKIG00000000046)	orc5 (ENSPKIG00000000068)	RELN (ENSPKIG00000000116)	ENSPKIG00000000152	guca1a (ENSPKIG00000000161)	hcls1 (ENSPKIG00000000171) #22	ENSPKIG00000000195	plekha5 (ENSPKIG00000000232)	ENSPKIG00000000252	ENSPKIG00000000259	ENSPKIG00000000269	ENSPKIG00000000276	PDE3A (ENSPKIG00000000302)	slco1c1 (ENSPKIG00000000348)	bcap29 (ENSPKIG00000000395)	gpr22a (ENSPKIG00000000422)
Clupeocephala	ANCESTRAL SPECIES	188									ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.k.a	ENSGT00940000156120.a	ENSGT00390000000406	ENSGT00940000155394.i.a	ENSGT00940000158014	ENSGT00940000171263	ENSGT00510000047886.b	ENSGT00940000157713	ENSGT00940000154980
Euteleosteomorpha	ANCESTRAL SPECIES	30	ENSGT00940000153567.b.a.a	ENSGT00940000158940.b	ENSGT00940000153567.a.a.b.a	ENSGT00940000155057.vb.b	ENSGT00940000155057.wb	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00990000204681	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l	ENSGT00940000156120.a	ENSGT00390000000406	ENSGT00940000155394.i.a	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899	ENSGT00940000154709.a.a	ENSGT00940000155455.g
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.b.a.a	ENSGT00940000155057.vb.a	ENSGT00390000006367.c.w	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00400000022326.b.a.a
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1175													ENSGT00390000009380.e.b	ENSGT00940000164333.f	ENSGT00730000111007.a.a.k.a #21	ENSGT00940000158997.e.a #22
Huchen	MODERN SPECIES	1665												lhfpl3 (ENSHHUG00000046388)	orc5 (ENSHHUG00000046392)	guca1a (ENSHHUG00000046412)	GOLGB1 (ENSHHUG00000046420) #21	hcls1 (ENSHHUG00000046446) #22	llph (ENSHHUG00000046512)	ppfia2 (ENSHHUG00000046516)
Salmoninae_a	ANCESTRAL SPECIES	261													ENSGT00390000009380.e.b	ENSGT00940000164333.f	ENSGT00730000111007.a.a.k.a #21	ENSGT00940000158997.e.a #22	ENSGT00940000165344.c
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	81	ENSGT00940000159379.b	ENSGT00940000153372.A.f.e	ENSGT00940000153567.a.a.b.a.b.c	ENSGT00940000155057.vb.a.b	ENSGT01070000254248.a	ENSGT00390000006367.c.w.a.a	ENSGT00530000063113.A.q.h	ENSGT00940000158039.h.s	ENSGT00390000004044.g	ENSGT00940000157862.s.a	ENSGT00990000203541.a.a.a.a.a.i	ENSGT00390000009380.e.b	ENSGT00940000164333.f	ENSGT00730000111007.a.a.k.a #21	ENSGT00940000158997.e.a.b #22	ENSGT00940000158997.e.a.a #22	ENSGT00940000165344.d	ENSGT01050000244900.a.a.a.a.b.bb.g	ENSGT00940000157479.c	ENSGT00940000153222.a.a.cb	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a.f	ENSGT00390000013067.l.j	ENSGT00940000154709.a.a.e	ENSGT00940000158899.i.a	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000153962.b.e.b	ENSGT00940000155394.i.a.f.a	ENSGT00390000000406.i.a	ENSGT00940000164178.h.a.a.a	ENSGT00940000156120.a.h
River trout	MODERN SPECIES	38	SEMA3C (ENSSTUG00000036366)	cd36 (ENSSTUG00000036284)	ENSSTUG00000036226	ENSSTUG00000036218	ENSSTUG00000036130	si:dkey-97m3.1 (ENSSTUG00000036097)	ergic2 (ENSSTUG00000036014)	ENSSTUG00000035894	ndufb2 (ENSSTUG00000035879)	ENSSTUG00000035873	ENSSTUG00000035865	lhfpl3 (ENSSTUG00000035854)	orc5 (ENSSTUG00000035808)	guca1a (ENSSTUG00000035796)	ENSSTUG00000035760 #21	hcls1 (ENSSTUG00000035213) #22	llph (ENSSTUG00000035187)	ppfia2 (ENSSTUG00000032738)	ACSS3 (ENSSTUG00000032599)	lin7a (ENSSTUG00000032580)	myf5 (ENSSTUG00000032573)	myf6 (ENSSTUG00000032558)	rps16 (ENSSTUG00000032534)	ENSSTUG00000032519	tnnt2c (ENSSTUG00000032501)	syt10 (ENSSTUG00000032485)	ENSSTUG00000032479	ENSSTUG00000031897	cyb5r3 (ENSSTUG00000030947)	syt1a (ENSSTUG00000030907)	pawr (ENSSTUG00000030899)
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000104865	ENSSSAG00000007415	ENSSSAG00000007372	ENSSSAG00000007344	ENSSSAG00000007190	ENSSSAG00000109934	ENSSSAG00000007177	ENSSSAG00000006955	NDUB2 (ENSSSAG00000006908)	ENSSSAG00000006913	ENSSSAG00000002335	lhfpl3 (ENSSSAG00000064408)	orc5 (ENSSSAG00000006811)	guca1a (ENSSSAG00000121021)	ENSSSAG00000006792 #21	hcls1 (ENSSSAG00000064251) #22	llph (ENSSSAG00000006778)	ENSSSAG00000006772	ppfia2 (ENSSSAG00000006415)	ENSSSAG00000092189	acss3 (ENSSSAG00000006095)	myf5 (ENSSSAG00000059922)	myf6 (ENSSSAG00000066608)	ENSSSAG00000066580	ENSSSAG00000089629	ENSSSAG00000113707	ENSSSAG00000095543	ENSSSAG00000083937	ENSSSAG00000059732	ENSSSAG00000059420	ENSSSAG00000059333
Salmo	ANCESTRAL SPECIES	81	ENSGT00940000154479.a.a.b.d.a	ENSGT00940000159379.b	ENSGT00940000153372.A.f.e	ENSGT00940000153567.a.a.b.a.b.c	ENSGT00940000155057.vb.a.b	ENSGT01070000254248.a	ENSGT00390000006367.c.w.a.a	ENSGT00530000063113.A.q.h	ENSGT00940000158039.h.s	ENSGT00390000004044.g	ENSGT00940000157862.s.a	ENSGT00990000203541.a.a.a.a.a.i	ENSGT00390000009380.e.b	ENSGT00940000164333.f	ENSGT00730000111007.a.a.k.a #21	ENSGT00940000158997.e.a.b #22	ENSGT00940000158997.e.a.a #22	ENSGT00940000165344.d	ENSGT01050000244900.a.a.a.a.b.bb.g	ENSGT00940000157479.c	ENSGT00940000153222.a.a.cb	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a.f	ENSGT00390000013067.l.j	ENSGT00940000154709.a.a.e	ENSGT00940000158899.i.a	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000153962.b.e.b	ENSGT00940000155394.i.a.f.a	ENSGT00390000000406.i.a	ENSGT00940000164178.h.a.a.a
River trout	MODERN SPECIES	34	ENSSTUG00000023071	ENSSTUG00000023310	ENSSTUG00000023318	ENSSTUG00000023322	ENSSTUG00000023340	si:dkey-97m3.1 (ENSSTUG00000023370)	ENSSTUG00000023379	ENSSTUG00000023386	KDM7A (ENSSTUG00000023394)	ndufb2 (ENSSTUG00000023507)	ENSSTUG00000023522	lhfpl3 (ENSSTUG00000023639)	orc5 (ENSSTUG00000023660)	guca1a (ENSSTUG00000023885)	ENSSTUG00000023891 #21	hcls1 (ENSSTUG00000023940) #22	llph (ENSSTUG00000024017)	ppfia2 (ENSSTUG00000024089)	ACSS3 (ENSSTUG00000025813)	ENSSTUG00000026102	lin7a (ENSSTUG00000026114)	myf5 (ENSSTUG00000026178)	myf6 (ENSSTUG00000026265)	rps16 (ENSSTUG00000026299)	tnnt2c (ENSSTUG00000026330)	syt10 (ENSSTUG00000026383)	ENSSTUG00000026446	cyb5r3 (ENSSTUG00000027246)	syt1a (ENSSTUG00000027446)	pawr (ENSSTUG00000027495)	ENSSTUG00000027503
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000158997.e.a #22
Oncorhynchus_a	ANCESTRAL SPECIES	31					ENSGT00940000155057.vb.a.b	ENSGT00390000006367.c.w.b	ENSGT00530000063113.A.q.g.d	ENSGT00940000158039.h.u	ENSGT00390000004044.h	ENSGT00940000157862.v	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00390000009380.e.b	ENSGT00940000164333.f	ENSGT00730000111007.a.a.l.b #21	ENSGT00940000158997.e.b.a #22	ENSGT00940000158997.e.a #22	ENSGT00940000165344.d.b	ENSGT01050000244900.a.a.a.a.b.bb.i.a	ENSGT00940000157479.c	ENSGT00940000153222.a.a.cb	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a.c	ENSGT00390000013067.l.j	ENSGT00940000154709.a.a.e	ENSGT00940000158899.i.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000153962.b.e.b	ENSGT00940000155394.i.a.f	ENSGT00390000000406.i.a	ENSGT00940000164178.h.a.a.a	ENSGT00940000156120.a.h
Chinook salmon	MODERN SPECIES	8	ENSOTSG00005034181	ENSOTSG00005034179	ENSOTSG00005034178	ptn (ENSOTSG00005034174)	chrm2a (ENSOTSG00005034173)	mtpn (ENSOTSG00005034171)	si:dkey-97m3.1 (ENSOTSG00005034164)	ergic2 (ENSOTSG00005034161)	KDM7A (ENSOTSG00005034158)	ndufb2 (ENSOTSG00005034155)	ENSOTSG00005034153	lhfpl3 (ENSOTSG00005034151)	orc5 (ENSOTSG00005034150)	guca1a (ENSOTSG00005034149)	ENSOTSG00005020017 #21	hcls1 (ENSOTSG00005020015) #22	ENSOTSG00005020014	llph (ENSOTSG00005020013)	ENSOTSG00005020012	ppfia2 (ENSOTSG00005020005)	ACSS3 (ENSOTSG00005018688)	lin7a (ENSOTSG00005018677)	myf5 (ENSOTSG00005018671)	myf6 (ENSOTSG00005018667)	rps16 (ENSOTSG00005018664)	tnnt2c (ENSOTSG00005018663)	syt10 (ENSOTSG00005018655)	ENSOTSG00005011764	cyb5r3 (ENSOTSG00005010535)	syt1a (ENSOTSG00005010532)	pawr (ENSOTSG00005010530)
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00940000155057.vb.b	ENSGT00940000155057.wb.g	ENSGT00940000155057.vb.a.b	ENSGT00390000006367.c.w	ENSGT00530000063113.A.q.g	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380.e.a	ENSGT00940000164333.e	ENSGT00730000111007.a.a.k.b #21	ENSGT00940000158997.f #22	ENSGT00940000165344.c	ENSGT00730000111007.a.a.l #21	ENSGT00940000158997.e.b #22	ENSGT00940000165344.d	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479.d	ENSGT00940000157479.c	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a.e	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l.j	ENSGT00390000013067.l.i	ENSGT00940000154709.a.a.e	ENSGT00940000158899.i.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000153962.b.e.b	ENSGT00940000155394.i.a.f
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00940000154479.a.a.b.d.b	ENSGT00940000159379.a.b	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.a.b.c	ENSGT00940000155057.vb.a.a	ENSGT00390000006367.c.w.a	ENSGT00530000063113.A.q.g	ENSGT00940000158039.h	ENSGT00390000004044.g	ENSGT00940000157862	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380.e.a	ENSGT00940000164333.e	ENSGT00730000111007.a.a.l #21	ENSGT00940000158997.e.b #22	ENSGT00940000165344.d	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479.d	ENSGT00940000153222.a.a.bb	ENSGT00950000182959.a.a.e	ENSGT00390000013067.l.i	ENSGT00940000164822.eb	ENSGT00940000154709.a.a.f	ENSGT00940000158899.i.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT01050000244951.a.b.a.b.b.g	ENSGT00940000153962.b.e.a	ENSGT00390000000406.i.b	ENSGT00940000164178.h.a.a.b	ENSGT00940000156120.a.g
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000159379.b	ENSGT00940000153372.A.f.g	ENSGT00940000153567.a.a.b.a.b.d	ENSGT00940000155057.vb.b	ENSGT00940000155057.wb.g	ENSGT00940000155057.vb.a.b	ENSGT00390000006367.c.w.b	ENSGT00530000063113.A.q.h	ENSGT00940000158039.h.u	ENSGT00390000004044.h	ENSGT00940000157862.v	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00390000009380.e.b	ENSGT00940000164333.f	ENSGT00730000111007.a.a.l.b #21	ENSGT00940000158997.e.b.a #22	ENSGT00940000165344.d.b	ENSGT01050000244900.a.a.a.a.b.bb.i.a	ENSGT00940000157479.c	ENSGT00940000153222.a.a.cb	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a.c	ENSGT00390000013067.l.j	ENSGT00940000154709.a.a.e	ENSGT00940000158899.i.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000153962.b.e.b	ENSGT00940000155394.i.a.f	ENSGT00390000000406.i.a	ENSGT00940000164178.h.a.a.a	ENSGT00940000156120.a.h
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000013242	ENSOMYG00000048006	ENSOMYG00000068180	ENSOMYG00000057562	ENSOMYG00000013116	ENSOMYG00000013071	ENSOMYG00000013061	ENSOMYG00000013055	ENSOMYG00000013028	ndufb2 (ENSOMYG00000013001)	ENSOMYG00000012992	lhfpl3 (ENSOMYG00000012982)	orc5 (ENSOMYG00000012964)	guca1a (ENSOMYG00000012949)	ENSOMYG00000012933 #21	hcls1 (ENSOMYG00000012684) #22	llph (ENSOMYG00000012619)	ppfia2 (ENSOMYG00000010771)	ACSS3 (ENSOMYG00000009811)	lin7a (ENSOMYG00000009534)	myf5 (ENSOMYG00000009433)	myf6 (ENSOMYG00000009391)	ENSOMYG00000009357	ENSOMYG00000009249	ENSOMYG00000009238	ENSOMYG00000068663	ENSOMYG00000063310	ENSOMYG00000009103	ENSOMYG00000008300	ENSOMYG00000053625	ENSOMYG00000007440
Oncorhynchus_a	ANCESTRAL SPECIES	31						ENSGT00940000155057.vb.a.b	ENSGT00390000006367.c.w.b	ENSGT00530000063113.A.q.g.d	ENSGT00940000158039.h.u	ENSGT00390000004044.h	ENSGT00940000157862.v	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00390000009380.e.b	ENSGT00940000164333.f	ENSGT00730000111007.a.a.l.b #21	ENSGT00940000158997.e.b.a #22	ENSGT00940000158997.e.a #22	ENSGT00940000165344.d.b	ENSGT01050000244900.a.a.a.a.b.bb.i.a	ENSGT00940000157479.c	ENSGT00940000153222.a.a.cb	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a.c	ENSGT00390000013067.l.j	ENSGT00940000154709.a.a.e	ENSGT00940000158899.i.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000153962.b.e.b	ENSGT00940000155394.i.a.f	ENSGT00390000000406.i.a	ENSGT00940000164178.h.a.a.a
Coho salmon	MODERN SPECIES	10	CD36 (ENSOKIG00005036810)	ENSOKIG00005037003	ENSOKIG00005037093	ENSOKIG00005037104	ENSOKIG00005037110	ENSOKIG00005037128	ENSOKIG00005037135	ERGIC2 (ENSOKIG00005037145)	KDM7A (ENSOKIG00005037241)	ndufb2 (ENSOKIG00005037334)	ENSOKIG00005037359	lhfpl3 (ENSOKIG00005037430)	orc5 (ENSOKIG00005037458)	guca1a (ENSOKIG00005037538)	ENSOKIG00005037557 #21	hcls1 (ENSOKIG00005037631) #22	llph (ENSOKIG00005037949)	ppfia2 (ENSOKIG00005038115)	ACSS3 (ENSOKIG00005042154)	lin7a (ENSOKIG00005042387)	myf5 (ENSOKIG00005042418)	myf6 (ENSOKIG00005042479)	rps16 (ENSOKIG00005042520)	tnnt2c (ENSOKIG00005042597)	syt10 (ENSOKIG00005042620)	ENSOKIG00005042681	CYB5R3 (ENSOKIG00005043270)	SYT1 (ENSOKIG00005044230)	pawr (ENSOKIG00005044327)	ENSOKIG00005044330	PPP1R12A (ENSOKIG00005044359)
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000154479.a.a.b.c.a	ENSGT00940000159379.a.b	ENSGT00940000153372.A.f.h	ENSGT00940000153567.a.a.b.a.b.c	ENSGT00940000155057.vb.a.a	ENSGT00390000006367.c.w.a	ENSGT00530000063113.A.q.g	ENSGT00940000158039.h.v	ENSGT00390000004044.g	ENSGT00940000157862.u.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00990000203541.a.a.a.a.a.l	ENSGT00390000009380.e.a	ENSGT00940000164333.e	ENSGT00730000111007.a.a.l.a #21	ENSGT00940000158997.e.b.b #22	ENSGT00940000165344.d.a	ENSGT01050000244900.a.a.a.a.b.bb.i.b	ENSGT00940000153222.a.a.bb	ENSGT00950000182959.a.a.e	ENSGT00950000182959.a.b.b.a.d	ENSGT00390000013067.l.i	ENSGT00940000164822.eb	ENSGT00940000154709.a.a.f	ENSGT00940000158899.i.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT01050000244951.a.b.a.b.b.g	ENSGT00940000153962.b.e.a	ENSGT00390000000406.i.b	ENSGT00940000164178.h.a.a.b	ENSGT00940000156120.a.g
Oncorhynchus_a	ANCESTRAL SPECIES	64	ENSGT00940000155057.vb.b	ENSGT00940000159379.a.b	ENSGT00940000153372.A.f.h	ENSGT00940000153567.a.a.b.a.b.c	ENSGT00940000155057.vb.a.a	ENSGT00390000006367.c.w.a	ENSGT00530000063113.A.q.g.c	ENSGT00940000158039.h.v	ENSGT00390000004044.g	ENSGT00940000157862.u.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00990000203541.a.a.a.a.a.l	ENSGT00390000009380.e.a	ENSGT00940000164333.e	ENSGT00730000111007.a.a.l.a #21	ENSGT00940000158997.e.b.b #22	ENSGT00940000165344.d.a	ENSGT01050000244900.a.a.a.a.b.bb.i.b	ENSGT00940000153222.a.a.bb	ENSGT00950000182959.a.a.e	ENSGT00950000182959.a.b.b.a.d	ENSGT00390000013067.l.i	ENSGT00940000164822.eb	ENSGT00940000154709.a.a.f	ENSGT00940000158899.i.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT01050000244951.a.b.a.b.b.g	ENSGT00940000153962.b.e.a	ENSGT00390000000406.i.b	ENSGT00940000164178.h.a.a.b	ENSGT00940000156120.a.g
Coho salmon	MODERN SPECIES	29	ENSOKIG00005005421	ENSOKIG00005005454	ENSOKIG00005005561	ENSOKIG00005005584	ENSOKIG00005005591	si:dkey-97m3.1 (ENSOKIG00005005611)	ERGIC2 (ENSOKIG00005005657)	ENSOKIG00005005773	ndufb2 (ENSOKIG00005005858)	ENSOKIG00005005876	ENSOKIG00005005890	LHFPL3 (ENSOKIG00005005900)	orc5 (ENSOKIG00005005916)	guca1a (ENSOKIG00005006054)	ENSOKIG00005006075 #21	hcls1 (ENSOKIG00005006199) #22	llph (ENSOKIG00005007027)	ppfia2 (ENSOKIG00005007307)	lin7a (ENSOKIG00005010877)	myf5 (ENSOKIG00005010902)	myf6 (ENSOKIG00005010942)	RPS16 (ENSOKIG00005010963)	ENSOKIG00005010986	ENSOKIG00005010999	ENSOKIG00005011022	ENSOKIG00005011026	ENSOKIG00005011037	ENSOKIG00005011075	cyb5r3 (ENSOKIG00005011252)	syt1a (ENSOKIG00005012455)	PAWR (ENSOKIG00005012477)
Chinook salmon	MODERN SPECIES	3015																hcls1 (ENSOTSG00005036781) #22	ENSOTSG00005036810	llph (ENSOTSG00005036811)	ppfia2 (ENSOTSG00005036817)	ENSOTSG00005041326
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000012470	ENSOMYG00000013343	ENSOMYG00000013372	ENSOMYG00000075212	ENSOMYG00000013383	ENSOMYG00000024866	ENSOMYG00000013418	ndufb2 (ENSOMYG00000013505)	ENSOMYG00000013553	ENSOMYG00000013624	ENSOMYG00000074943	lhfpl3 (ENSOMYG00000013630)	orc5 (ENSOMYG00000077068)	ENSOMYG00000013697 #21	guca1a (ENSOMYG00000013888)	hcls1 (ENSOMYG00000013975) #22	llph (ENSOMYG00000013636)	ppfia2 (ENSOMYG00000014291)	ENSOMYG00000004734	ENSOMYG00000050420	lin7a (ENSOMYG00000014904)	Myf5 (ENSOMYG00000014917)	ENSOMYG00000074848	myf6 (ENSOMYG00000014934)	ENSOMYG00000014948	ENSOMYG00000014963	ENSOMYG00000014972	ENSOMYG00000014985	ENSOMYG00000014997	ENSOMYG00000015082	ENSOMYG00000015363
Salmo	ANCESTRAL SPECIES	25	ENSGT00940000159379.a.b	ENSGT00940000153372.A.f.f	ENSGT00940000155057.vb.a.a	ENSGT00390000006367.c.w.a.b	ENSGT00530000063113.A.q.g	ENSGT00390000004044.h	ENSGT00940000157862.t	ENSGT01040000240385.A.a.b.b.f	ENSGT00940000158039.h.t	ENSGT00940000157862.s.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00990000203541.a.a.a.a.a.j	ENSGT00390000009380.e.a	ENSGT00940000164333.e	ENSGT00730000111007.a.a.k.b #21	ENSGT00940000158997.e.b #22	ENSGT00940000165344.c	ENSGT01050000244900.a.a.a.a.b.bb.h	ENSGT00940000157479.d	ENSGT00940000153222.a.a.bb	ENSGT00950000182959.a.a.e	ENSGT00950000182959.a.b.b.a.e	ENSGT00390000013067.l.i	ENSGT00940000164822.eb.a	ENSGT00940000154709.a.a.f	ENSGT00940000158899.i.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT01050000244951.a.b.a.b.b.g	ENSGT00940000153962.b.e.a	ENSGT00940000155394.i.a.f.b	ENSGT00390000000406.i.b
Atlantic salmon	MODERN SPECIES	26	cd36 (ENSSSAG00000005358)	ENSSSAG00000005572	ENSSSAG00000076602	ENSSSAG00000111612	ENSSSAG00000003150	ENSSSAG00000002786	ENSSSAG00000002755	ENSSSAG00000096353	ndufb2 (ENSSSAG00000116958)	ENSSSAG00000069201	ENSSSAG00000064417	lhfpl3 (ENSSSAG00000082371)	orc5 (ENSSSAG00000064371)	guca1a (ENSSSAG00000085222)	ENSSSAG00000064357 #21	hcls1 (ENSSSAG00000005879) #22	llph (ENSSSAG00000064235)	ppfia2 (ENSSSAG00000060373)	ACSS3 (ENSSSAG00000060026)	lin7a (ENSSSAG00000086615)	myf5 (ENSSSAG00000006004)	myf6 (ENSSSAG00000059887)	ENSSSAG00000109892	ENSSSAG00000059832	ENSSSAG00000090411	ENSSSAG00000059802	ENSSSAG00000059783	ENSSSAG00000050368	ENSSSAG00000049921	ENSSSAG00000120466	ENSSSAG00000092375
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00940000159379.a.b	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.a.b	ENSGT00940000155057.vb.b	ENSGT00940000155057.wb.g	ENSGT00940000155057.vb.a.b	ENSGT00390000006367.c.w	ENSGT00530000063113.A.q.g	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380.e.a	ENSGT00940000164333.e	ENSGT00730000111007.a.a.k.b #21	ENSGT00940000158997.f #22	ENSGT00940000165344.c	ENSGT00730000111007.a.a.l #21	ENSGT00940000158997.e.b #22	ENSGT00940000165344.d	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479.d	ENSGT00940000157479.c	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a.e	ENSGT00950000182959.a.a.f	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l.j	ENSGT00390000013067.l.i	ENSGT00940000154709.a.a.e	ENSGT00940000158899.i.b
Huchen	MODERN SPECIES	2246											ENSHHUG00000042149	lhfpl3 (ENSHHUG00000042145)	orc5 (ENSHHUG00000042101)	guca1a (ENSHHUG00000042046)	GOLGB1 (ENSHHUG00000042022) #21	hcls1 (ENSHHUG00000041981) #22	llph (ENSHHUG00000041953)
Northern pike	MODERN SPECIES	22	ENSELUG00000001038	ENSELUG00000002174	ENSELUG00000002172	ENSELUG00000002178	si:dkey-97m3.1 (ENSELUG00000002190)	ergic2 (ENSELUG00000002211)	KDM7A (ENSELUG00000002230)	ndufb2 (ENSELUG00000002225)	ENSELUG00000002258	ENSELUG00000026586	ENSELUG00000028784	lhfpl3 (ENSELUG00000002269)	orc5 (ENSELUG00000002281)	guca1a (ENSELUG00000002288)	ENSELUG00000002315 #21	hcls1 (ENSELUG00000002347) #22	llph (ENSELUG00000026094)	ppfia2 (ENSELUG00000002421)	ACSS3 (ENSELUG00000002474)	lin7a (ENSELUG00000002488)	myf5 (ENSELUG00000002500)	rps16 (ENSELUG00000002505)	tnnt2c (ENSELUG00000002535)	syt10 (ENSELUG00000002545)	ENSELUG00000002578	cyb5r3 (ENSELUG00000001118)	syt1a (ENSELUG00000002624)	pawr (ENSELUG00000002637)	ppp1r12a (ENSELUG00000002794)	ENSELUG00000002871	kitlgb (ENSELUG00000002894)
Acanthomorphata	ANCESTRAL SPECIES	47	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.b.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Cod	MODERN SPECIES	10	ENSGMOG00000026907	ENSGMOG00000030091	ENSGMOG00000023445	ENSGMOG00000034952	ENSGMOG00000002845	ENSGMOG00000036347	ENSGMOG00000003186	ENSGMOG00000003210	ENSGMOG00000003233	ndufb2 (ENSGMOG00000003273)	ENSGMOG00000003289	lhfpl3 (ENSGMOG00000011324)	orc5 (ENSGMOG00000003309)	guca1a (ENSGMOG00000018859)	ENSGMOG00000032187 #21	hcls1 (ENSGMOG00000003402) #22	llph (ENSGMOG00000028944)	ENSGMOG00000003447	ENSGMOG00000003468	CCND2 (ENSGMOG00000015454)	ENSGMOG00000035923	ENSGMOG00000031407	FGF6 (ENSGMOG00000005194)	ENSGMOG00000015400	ENSGMOG00000009463	ENSGMOG00000031410	ENSGMOG00000032912	ENSGMOG00000031184	ENSGMOG00000009429	MCAT (ENSGMOG00000009417)	ttll1 (ENSGMOG00000009406)
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Pinecone sodierfish	MODERN SPECIES	15	ENSMMDG00005023040	SEMA3C (ENSMMDG00005023044)	cd36 (ENSMMDG00005023059)	ENSMMDG00005023078	ENSMMDG00005023082	ENSMMDG00005023092	si:dkey-97m3.1 (ENSMMDG00005023122)	ergic2 (ENSMMDG00005023132)	KDM7A (ENSMMDG00005023196)	ndufb2 (ENSMMDG00005023204)	ENSMMDG00005023210	lhfpl3 (ENSMMDG00005023221)	orc5 (ENSMMDG00005023222)	guca1a (ENSMMDG00005023233)	ENSMMDG00005023234 #21	hcls1 (ENSMMDG00005023238) #22	llph (ENSMMDG00005023246)	pex26 (ENSMMDG00005023248)	ENSMMDG00005023251	ccnd2b (ENSMMDG00005023255)	tigarb (ENSMMDG00005023257)	fgf23 (ENSMMDG00005023262)	fgf6b (ENSMMDG00005023283)	rad51ap1 (ENSMMDG00005023284)	GALNT8 (ENSMMDG00005023287)	ADA2 (ENSMMDG00005014512)	atp6v1e1b (ENSMMDG00005014514)	ENSMMDG00005014519	spic (ENSMMDG00005014520)	mybpc1 (ENSMMDG00005014521)	chpt1 (ENSMMDG00005014530)
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Tiger tail seahorse	MODERN SPECIES	433	ppfia2 (ENSHCOG00000017898)	ACSS3 (ENSHCOG00000017835)	lin7a (ENSHCOG00000017797)	myf5 (ENSHCOG00000017783)	myf6 (ENSHCOG00000017768)	rps16 (ENSHCOG00000017762)	ppp1r12a (ENSHCOG00000017732)	pawr (ENSHCOG00000017688)	syt1a (ENSHCOG00000017684)	cyb5r3 (ENSHCOG00000017648)	ENSHCOG00000017619	lhfpl3 (ENSHCOG00000017594)	orc5 (ENSHCOG00000017584)	guca1a (ENSHCOG00000000480)	ENSHCOG00000017542 #21	hcls1 (ENSHCOG00000017538) #22	pex26 (ENSHCOG00000017529)	llph (ENSHCOG00000017511)	ccnd2b (ENSHCOG00000017500)	fgf23 (ENSHCOG00000017488)	FGF6 (ENSHCOG00000017469)	ENSHCOG00000017415	KDM5A (ENSHCOG00000017403)	SLC6A13 (ENSHCOG00000017332)	USP15 (ENSHCOG00000017324)	ENSHCOG00000017268	pim3 (ENSHCOG00000017204)	ENSHCOG00000017193	ENSHCOG00000017182	ENSHCOG00000017171	RSBN1L (ENSHCOG00000017157)
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.wb	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.d	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Oryzias	ANCESTRAL SPECIES	20	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.d	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a.i	ENSGT00940000160161.e.a.j	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.d	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a.i	ENSGT00940000160161.e.a.j	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a
Indian medaka	MODERN SPECIES	2	SEMA3C (ENSOMEG00000004303)	cd36 (ENSOMEG00000004403)	ENSOMEG00000004446	ENSOMEG00000004456	ENSOMEG00000004468	si:dkey-97m3.1 (ENSOMEG00000004500)	ergic2 (ENSOMEG00000004563)	KDM7A (ENSOMEG00000004584)	ENSOMEG00000004598	ndufb2 (ENSOMEG00000004605)	ENSOMEG00000004627	lhfpl3 (ENSOMEG00000004637)	orc5 (ENSOMEG00000004687)	guca1a (ENSOMEG00000004702)	ENSOMEG00000004733 #21	hcls1 (ENSOMEG00000004765) #22	llph (ENSOMEG00000004780)	ENSOMEG00000004794	ENSOMEG00000004813	ccnd2b (ENSOMEG00000004828)	tigarb (ENSOMEG00000004846)	fgf23 (ENSOMEG00000004863)	fgf6b (ENSOMEG00000004874)	rad51ap1 (ENSOMEG00000004896)	GALNT8 (ENSOMEG00000004913)	GALNT8 (ENSOMEG00000004928)	ADA2 (ENSOMEG00000004937)	atp6v1e1b (ENSOMEG00000004969)	ENSOMEG00000004981	spic (ENSOMEG00000005008)	ENSOMEG00000005027
Javanese ricefish	MODERN SPECIES	15	rpl18a (ENSOJAG00000020726)	SEMA3C (ENSOJAG00000020832)	cd36 (ENSOJAG00000021242)	ENSOJAG00000021299	ENSOJAG00000021379	ENSOJAG00000021540	si:dkey-97m3.1 (ENSOJAG00000021550)	ergic2 (ENSOJAG00000021598)	KDM7A (ENSOJAG00000021647)	ndufb2 (ENSOJAG00000021680)	ENSOJAG00000021688	lhfpl3 (ENSOJAG00000021705)	orc5 (ENSOJAG00000021719)	guca1a (ENSOJAG00000021865)	ENSOJAG00000021872 #21	hcls1 (ENSOJAG00000021881) #22	llph (ENSOJAG00000021927)	ENSOJAG00000021932	ENSOJAG00000021943	ccnd2b (ENSOJAG00000021955)	tigarb (ENSOJAG00000021965)	fgf23 (ENSOJAG00000021977)	fgf6b (ENSOJAG00000021978)	rad51ap1 (ENSOJAG00000021986)	GALNT8 (ENSOJAG00000022020)	GALNT8 (ENSOJAG00000022045)	ADA2 (ENSOJAG00000022064)	atp6v1e1b (ENSOJAG00000022078)	ENSOJAG00000022094	spic (ENSOJAG00000022098)	ENSOJAG00000022100
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.d	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a.i	ENSGT00940000160161.e.a.j	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	51	chrm2a (ENSOSIG00000005373)	ENSOSIG00000005369	SEMA3C (ENSOSIG00000005314)	cd36 (ENSOSIG00000005295)	ENSOSIG00000005228	ENSOSIG00000005174	si:dkey-97m3.1 (ENSOSIG00000005054)	ergic2 (ENSOSIG00000005036)	KDM7A (ENSOSIG00000004985)	ndufb2 (ENSOSIG00000004974)	KMT2E (ENSOSIG00000004952)	lhfpl3 (ENSOSIG00000004923)	orc5 (ENSOSIG00000001193)	guca1a (ENSOSIG00000001187)	ENSOSIG00000001183 #21	hcls1 (ENSOSIG00000001178) #22	llph (ENSOSIG00000001175)	ENSOSIG00000001172	ENSOSIG00000001170	ccnd2b (ENSOSIG00000001169)	fgf23 (ENSOSIG00000001167)	fgf6b (ENSOSIG00000001166)	rad51ap1 (ENSOSIG00000001165)	ENSOSIG00000001157	ADA2 (ENSOSIG00000001155)	atp6v1e1b (ENSOSIG00000001152)	spic (ENSOSIG00000001147)	ENSOSIG00000001145	chpt1 (ENSOSIG00000000153)	gnptab (ENSOSIG00000000122)	dram1 (ENSOSIG00000000069)
Chinese medaka	MODERN SPECIES	52	chrm2a (ENSOSIG00000021926)	ENSOSIG00000021920	ENSOSIG00000021442	cd36 (ENSOSIG00000021399)	ENSOSIG00000021381	ENSOSIG00000021252	si:dkey-97m3.1 (ENSOSIG00000021193)	ergic2 (ENSOSIG00000021149)	KDM7A (ENSOSIG00000021128)	ndufb2 (ENSOSIG00000021113)	KMT2E (ENSOSIG00000021102)	lhfpl3 (ENSOSIG00000021092)	orc5 (ENSOSIG00000020956)	guca1a (ENSOSIG00000020926)	ENSOSIG00000020925 #21	hcls1 (ENSOSIG00000020920) #22	llph (ENSOSIG00000020916)	ENSOSIG00000020914	ENSOSIG00000020908	ccnd2b (ENSOSIG00000020905)	tigarb (ENSOSIG00000020901)	fgf23 (ENSOSIG00000020897)	rad51ap1 (ENSOSIG00000020890)	ENSOSIG00000020886	ADA2 (ENSOSIG00000020880)	atp6v1e1b (ENSOSIG00000020873)	ENSOSIG00000020860	spic (ENSOSIG00000020853)	ENSOSIG00000020844	chpt1 (ENSOSIG00000020799)	gnptab (ENSOSIG00000020780)
Japanese Medaka HdrR	MODERN SPECIES	15	ENSORLG00000029110	SEMA3C (ENSORLG00000016082)	cd36 (ENSORLG00000016066)	ENSORLG00000016048	ENSORLG00000029794	ENSORLG00000016025	si:dkey-97m3.1 (ENSORLG00000015996)	ENSORLG00000015969	ENSORLG00000015953	ndufb2 (ENSORLG00000015944)	KMT2E (ENSORLG00000015936)	lhfpl3 (ENSORLG00000015917)	orc5 (ENSORLG00000015908)	guca1a (ENSORLG00000015886)	ENSORLG00000015877 #21	hcls1 (ENSORLG00000015871) #22	llph (ENSORLG00000028141)	ENSORLG00000015851	ENSORLG00000015847	ccnd2b (ENSORLG00000015840)	tigarb (ENSORLG00000015830)	fgf23 (ENSORLG00000015823)	fgf6b (ENSORLG00000030652)	rad51ap1 (ENSORLG00000015813)	GALNT8 (ENSORLG00000015811)	ENSORLG00000022351	ENSORLG00000015798	atp6v1e1b (ENSORLG00000015787)	ENSORLG00000022679	spic (ENSORLG00000023569)	ENSORLG00000015776
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.d	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.d	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00440000039984.b	ENSGT00940000158420	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000161860	ENSGT00940000158576.a.a	ENSGT00940000164299.b.a	ENSGT00940000160758	ENSGT00940000161105
NAME_4	ANCESTRAL SPECIES	171						ENSGT00940000155057.wb.rc.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00440000039984.b	ENSGT00940000158420	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000161860	ENSGT00940000158576.a.a	ENSGT00940000164299.b.a	ENSGT00940000158576.b	ENSGT00940000160758
Mummichog	MODERN SPECIES	540						si:dkey-97m3.1 (ENSFHEG00000006958)	ergic2 (ENSFHEG00000006924)	KDM7A (ENSFHEG00000006893)	ndufb2 (ENSFHEG00000006864)	ENSFHEG00000006851	ENSFHEG00000006843	lhfpl3 (ENSFHEG00000006833)	orc5 (ENSFHEG00000006803)	guca1a (ENSFHEG00000006769)	ENSFHEG00000006752 #21	hcls1 (ENSFHEG00000006732) #22	llph (ENSFHEG00000006709)	ENSFHEG00000006697	ENSFHEG00000006688	zgc:194209 (ENSFHEG00000006657)	gnsa (ENSFHEG00000006629)	ENSFHEG00000006561	ENSFHEG00000006557	ENSFHEG00000006529	ENSFHEG00000006522	ENSFHEG00000006508	ENSFHEG00000006355
Sheepshead minnow	MODERN SPECIES	693					ENSCVAG00000019458	ENSCVAG00000019475	si:dkey-97m3.1 (ENSCVAG00000019501)	ergic2 (ENSCVAG00000019508)	KDM7A (ENSCVAG00000019522)	ndufb2 (ENSCVAG00000019545)	KMT2E (ENSCVAG00000019830)	lhfpl3 (ENSCVAG00000019858)	orc5 (ENSCVAG00000019947)	guca1a (ENSCVAG00000019981)	ENSCVAG00000019993 #21	hcls1 (ENSCVAG00000020005) #22	llph (ENSCVAG00000020013)	pex26 (ENSCVAG00000020022)	ENSCVAG00000020038	zgc:194209 (ENSCVAG00000020061)
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.d	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00440000039984.b	ENSGT00940000158420	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000161860	ENSGT00940000158576.a.a	ENSGT00940000164299.b.a	ENSGT00940000160758	ENSGT00940000161105
Poecilia	ANCESTRAL SPECIES	29	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.d	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00440000039984.b	ENSGT00940000158420	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000161860	ENSGT00940000158576.a.a	ENSGT00940000164299.b.a	ENSGT00940000160758	ENSGT00940000156124.d
NAME_6	ANCESTRAL SPECIES	55	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.d	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00440000039984.b	ENSGT00940000158420	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000161860	ENSGT00940000158576.a.a	ENSGT00940000164299.b.a	ENSGT00940000160758	ENSGT00940000156124.d
Amazon molly	MODERN SPECIES	320	ENSPFOG00000016861	SEMA3C (ENSPFOG00000016799)	cd36 (ENSPFOG00000016729)	ENSPFOG00000016689	ENSPFOG00000016591	si:dkey-97m3.1 (ENSPFOG00000016487)	ergic2 (ENSPFOG00000016432)	KDM7A (ENSPFOG00000016338)	ndufb2 (ENSPFOG00000016333)	ENSPFOG00000016278	lhfpl3 (ENSPFOG00000016266)	orc5 (ENSPFOG00000016227)	guca1a (ENSPFOG00000016218)	ENSPFOG00000016139 #21	ENSPFOG00000023403	hcls1 (ENSPFOG00000024334) #22	llph (ENSPFOG00000016134)	ENSPFOG00000016119	ENSPFOG00000016100	zgc:194209 (ENSPFOG00000023542)	gnsa (ENSPFOG00000016021)	dennd6b (ENSPFOG00000015866)	gcc1 (ENSPFOG00000015840)	arf5 (ENSPFOG00000015817)	lamtor4 (ENSPFOG00000015816)	atp6v1f (ENSPFOG00000015815)	KCNA5 (ENSPFOG00000015813)	KCNA1 (ENSPFOG00000020847)	ENSPFOG00000020846	ARHGAP8 (ENSPFOG00000015803)	ARHGAP8 (ENSPFOG00000015678)
Sailfin molly	MODERN SPECIES	903							si:dkey-97m3.1 (ENSPLAG00000015404)	ergic2 (ENSPLAG00000015463)	KDM7A (ENSPLAG00000015471)	ndufb2 (ENSPLAG00000015487)	ENSPLAG00000015543	lhfpl3 (ENSPLAG00000015559)	orc5 (ENSPLAG00000015619)	guca1a (ENSPLAG00000015643)	ENSPLAG00000015649 #21	hcls1 (ENSPLAG00000015657) #22	llph (ENSPLAG00000015667)	ENSPLAG00000015675	ENSPLAG00000015690	zgc:194209 (ENSPLAG00000015699)	ENSPLAG00000015734
Guppy	MODERN SPECIES	454	ENSPREG00000022313	SEMA3C (ENSPREG00000022300)	cd36 (ENSPREG00000022234)	ENSPREG00000022201	ENSPREG00000022187	si:dkey-97m3.1 (ENSPREG00000022178)	ergic2 (ENSPREG00000022170)	KDM7A (ENSPREG00000022163)	ENSPREG00000022156	ndufb2 (ENSPREG00000022148)	ENSPREG00000022133	lhfpl3 (ENSPREG00000022128)	orc5 (ENSPREG00000022114)	guca1a (ENSPREG00000022105)	ENSPREG00000022080 #21	hcls1 (ENSPREG00000022029) #22	llph (ENSPREG00000022008)	ENSPREG00000021997	zgc:194209 (ENSPREG00000021988)	napepld (ENSPREG00000021978)	plxnb2a.1 (ENSPREG00000021937)	mdm2 (ENSPREG00000021916)	ENSPREG00000021907	slc35e3 (ENSPREG00000021891)	UPF2 (ENSPREG00000021880)	ENSPREG00000021872	rab3ip (ENSPREG00000021855)	TMEM19 (ENSPREG00000021838)	kics2 (ENSPREG00000021830)	srgap1b (ENSPREG00000021815)	AVPR1A (ENSPREG00000021802)
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a
Turquoise killifish	MODERN SPECIES	1610	ENSNFUG00015010292	KLHL10 (ENSNFUG00015010248)	ENSNFUG00015010242	ENSNFUG00015009156	FAR2 (ENSNFUG00015008942)	ergic2 (ENSNFUG00015006465)	ENSNFUG00015006429	KDM7A (ENSNFUG00015006317)	ndufb2 (ENSNFUG00015006305)	ENSNFUG00015006181	lhfpl3 (ENSNFUG00015006146)	BX927253.1 (ENSNFUG00015006141)	orc5 (ENSNFUG00015006122)	guca1a (ENSNFUG00015006119)	ENSNFUG00015006113	hcls1 (ENSNFUG00015006102) #22	LLPH (ENSNFUG00015006094)	pex26 (ENSNFUG00015006078)	ENSNFUG00015006066	ENSNFUG00015006063	CCND2B (ENSNFUG00015006054)	tigarb (ENSNFUG00015006043)	fgf23 (ENSNFUG00015006025)	fgf6b (ENSNFUG00015006006)	GALNT8 (ENSNFUG00015005978)	ADA2 (ENSNFUG00015005968)	atp6v1e1b (ENSNFUG00015005953)	spic (ENSNFUG00015005937)	ENSNFUG00015005927	mybpc1 (ENSNFUG00015005654)	chpt1 (ENSNFUG00015005553)
Mangrove rivulus	MODERN SPECIES	19	ENSKMAG00000011574	SEMA3C (ENSKMAG00000011493)	cd36 (ENSKMAG00000011439)	ENSKMAG00000011408	ENSKMAG00000011380	ENSKMAG00000011221	si:dkey-97m3.1 (ENSKMAG00000011176)	ergic2 (ENSKMAG00000011143)	KDM7A (ENSKMAG00000011120)	ndufb2 (ENSKMAG00000011103)	ENSKMAG00000011084	lhfpl3 (ENSKMAG00000011069)	orc5 (ENSKMAG00000011005)	guca1a (ENSKMAG00000011055)	ENSKMAG00000010966 #21	hcls1 (ENSKMAG00000010930) #22	llph (ENSKMAG00000010914)	PEX26 (ENSKMAG00000010907)	ENSKMAG00000010895	ccnd2b (ENSKMAG00000010871)	tigarb (ENSKMAG00000010863)	fgf23 (ENSKMAG00000010819)	fgf6b (ENSKMAG00000010762)	rad51ap1 (ENSKMAG00000010739)	GALNT8 (ENSKMAG00000010618)	ADA2 (ENSKMAG00000010554)	atp6v1e1b (ENSKMAG00000010516)	spic (ENSKMAG00000010487)	ENSKMAG00000010471	mybpc1 (ENSKMAG00000010418)	chpt1 (ENSKMAG00000010383)
Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.wb.uc	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Nile tilapia	MODERN SPECIES	8	ENSONIG00000000091	ENSONIG00000032377	ENSONIG00000038166	ENSONIG00000029185	ENSONIG00000000092	si:dkey-97m3.1 (ENSONIG00000000094)	ergic2 (ENSONIG00000000095)	ENSONIG00000034239	KDM7A (ENSONIG00000000096)	ndufb2 (ENSONIG00000031694)	ENSONIG00000000097	lhfpl3 (ENSONIG00000041134)	orc5 (ENSONIG00000000099)	guca1a (ENSONIG00000000008)	GOLGB1 (ENSONIG00000039238) #21	hcls1 (ENSONIG00000000010) #22	llph (ENSONIG00000000011)	pex26 (ENSONIG00000000012)	ENSONIG00000000013	ccnd2b (ENSONIG00000036432)	ENSONIG00000028964	tigarb (ENSONIG00000000015)	fgf23 (ENSONIG00000000016)	FGF6 (ENSONIG00000035736)	rad51ap1 (ENSONIG00000034788)	GALNT8 (ENSONIG00000000018)	ADA2 (ENSONIG00000000020)	atp6v1e1b (ENSONIG00000000021)	ENSONIG00000029892	spic (ENSONIG00000000031)	ENSONIG00000031554
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000158254
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q.a.a	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000158254
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q.b	ENSGT00530000063113.A.q.a.a	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000158254
Zebra mbuna	MODERN SPECIES	1099	mtpn (ENSMZEG00005002563)	ENSMZEG00005002580	SEMA3C (ENSMZEG00005002601)	cd36 (ENSMZEG00005002663)	ENSMZEG00005002699	ENSMZEG00005002728	si:dkey-97m3.1 (ENSMZEG00005002848)	ergic2 (ENSMZEG00005002888)	KDM7A (ENSMZEG00005002933)	ndufb2 (ENSMZEG00005002948)	KMT2E (ENSMZEG00005002977)	lhfpl3 (ENSMZEG00005003090)	orc5 (ENSMZEG00005003116)	guca1a (ENSMZEG00005003182)	GOLGB1 (ENSMZEG00005003226) #21	hcls1 (ENSMZEG00005003253) #22	llph (ENSMZEG00005003273)	ENSMZEG00005003287	ENSMZEG00005003294	ccnd2b (ENSMZEG00005003304)	tigarb (ENSMZEG00005003326)	fgf23 (ENSMZEG00005003332)	fgf6b (ENSMZEG00005003354)	rad51ap1 (ENSMZEG00005003373)	GALNT8 (ENSMZEG00005003410)	ADA2 (ENSMZEG00005003421)	atp6v1e1b (ENSMZEG00005003431)	ENSMZEG00005003441	ENSMZEG00005003446	spic (ENSMZEG00005003465)	mybpc1 (ENSMZEG00005003483)
Eastern happy	MODERN SPECIES	8	ENSACLG00000019382	si:dkey-97m3.1 (ENSACLG00000019640)	ergic2 (ENSACLG00000019693)	kdm7aa (ENSACLG00000019716)	ENSACLG00000019777	ergic2 (ENSACLG00000019780)	ENSACLG00000019796	ENSACLG00000019803	ndufb2 (ENSACLG00000019812)	KMT2E (ENSACLG00000019838)	lhfpl3 (ENSACLG00000019974)	ENSACLG00000019987	orc5 (ENSACLG00000020008)	guca1a (ENSACLG00000020083)	GOLGB1 (ENSACLG00000020110) #21	hcls1 (ENSACLG00000020129) #22	llph (ENSACLG00000020156)	ENSACLG00000020180	ENSACLG00000020205	ccnd2b (ENSACLG00000020230)	tigarb (ENSACLG00000020276)	fgf23 (ENSACLG00000020286)	fgf6b (ENSACLG00000020303)	rad51ap1 (ENSACLG00000020321)	GALNT8 (ENSACLG00000020347)	ADA2 (ENSACLG00000020373)	atp6v1e1b (ENSACLG00000020410)	spic (ENSACLG00000020444)	mybpc1 (ENSACLG00000020482)	chpt1 (ENSACLG00000020935)	gnptab (ENSACLG00000021005)
Lyretail cichlid	MODERN SPECIES	291	ENSNBRG00000010278	SEMA3C (ENSNBRG00000010236)	cd36 (ENSNBRG00000010055)	ENSNBRG00000010018	ENSNBRG00000009973	si:dkey-97m3.1 (ENSNBRG00000009940)	ergic2 (ENSNBRG00000009914)	KDM7A (ENSNBRG00000009905)	ENSNBRG00000009889	ndufb2 (ENSNBRG00000009881)	KMT2E (ENSNBRG00000009780)	lhfpl3 (ENSNBRG00000009749)	orc5 (ENSNBRG00000009720)	guca1a (ENSNBRG00000009705)	ENSNBRG00000009693 #21	hcls1 (ENSNBRG00000009634) #22	llph (ENSNBRG00000009616)	ENSNBRG00000009605	ENSNBRG00000009583	ccnd2b (ENSNBRG00000009560)	tigarb (ENSNBRG00000009544)	fgf23 (ENSNBRG00000009529)	fgf6b (ENSNBRG00000009517)	rad51ap1 (ENSNBRG00000009488)	GALNT8 (ENSNBRG00000009324)	ADA2 (ENSNBRG00000009273)	atp6v1e1b (ENSNBRG00000009246)	ENSNBRG00000009237	spic (ENSNBRG00000009212)	ENSNBRG00000009204	mybpc1 (ENSNBRG00000009045)
Midas cichlid	MODERN SPECIES	922	mtpn (ENSACIG00000002946)	ENSACIG00000002934	SEMA3C (ENSACIG00000002892)	cd36 (ENSACIG00000002859)	ENSACIG00000002842	ENSACIG00000002792	si:dkey-97m3.1 (ENSACIG00000002765)	ergic2 (ENSACIG00000002734)	KDM7A (ENSACIG00000002694)	ndufb2 (ENSACIG00000002589)	KMT2E (ENSACIG00000002476)	lhfpl3 (ENSACIG00000002449)	orc5 (ENSACIG00000002396)	guca1a (ENSACIG00000002362)	ENSACIG00000002311 #21	hcls1 (ENSACIG00000002215) #22	llph (ENSACIG00000002203)	ENSACIG00000002165	ENSACIG00000002143	ccnd2b (ENSACIG00000002133)	ENSACIG00000002129	DIRAS1 (ENSACIG00000002089)	ENSACIG00000002081	APC2 (ENSACIG00000002016)	ENSACIG00000001990	reep6 (ENSACIG00000001973)	sgta (ENSACIG00000001872)	SLC39A3 (ENSACIG00000001847)	ENSACIG00000001815	zgc:113223 (ENSACIG00000001796)	ENSACIG00000001724
Pomacentridae	ANCESTRAL SPECIES	59	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.c.a	ENSGT00940000155057.wb.uc	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b
Pomacentridae_A	ANCESTRAL SPECIES	58	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.c.a	ENSGT00940000155057.wb.uc	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b
Amphiprion	ANCESTRAL SPECIES	19	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.vb.b.c.a	ENSGT00940000155057.wb.uc	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00940000165713	ENSGT00390000017324	ENSGT00940000158969	ENSGT00390000002793
Clown anemonefish	MODERN SPECIES	2458													orc5 (ENSAOCG00000021066)	guca1a (ENSAOCG00000021102)	GOLGB1 (ENSAOCG00000021127) #21	hcls1 (ENSAOCG00000021146) #22	llph (ENSAOCG00000021163)	ENSAOCG00000021176	ENSAOCG00000021208	ccnd2b (ENSAOCG00000021229)	tigarb (ENSAOCG00000001556)	fgf23 (ENSAOCG00000021308)	fgf6b (ENSAOCG00000021324)	rad51ap1 (ENSAOCG00000002806)	GALNT8 (ENSAOCG00000021682)
Orange clownfish	MODERN SPECIES	13	SEMA3C (ENSAPEG00000020577)	cd36 (ENSAPEG00000020487)	ENSAPEG00000020443	ENSAPEG00000020421	ENSAPEG00000020393	ENSAPEG00000020320	si:dkey-97m3.1 (ENSAPEG00000020276)	ergic2 (ENSAPEG00000020238)	KDM7A (ENSAPEG00000020214)	ndufb2 (ENSAPEG00000020187)	ENSAPEG00000020070	lhfpl3 (ENSAPEG00000020040)	orc5 (ENSAPEG00000019968)	guca1a (ENSAPEG00000019937)	ENSAPEG00000019907 #21	hcls1 (ENSAPEG00000019883) #22	llph (ENSAPEG00000019869)	ENSAPEG00000019818	ENSAPEG00000019780	ccnd2b (ENSAPEG00000019764)	tigarb (ENSAPEG00000019748)	fgf23 (ENSAPEG00000019692)	fgf6b (ENSAPEG00000019675)	ENSAPEG00000019649	GALNT8 (ENSAPEG00000019630)	ADA2 (ENSAPEG00000019592)	atp6v1e1b (ENSAPEG00000019536)	mrpl42 (ENSAPEG00000019516)	pwp1 (ENSAPEG00000019466)	ANO6 (ENSAPEG00000019397)	ints13 (ENSAPEG00000019316)
Spiny chromis	MODERN SPECIES	1295															ENSAPOG00000005817 #21	hcls1 (ENSAPOG00000005854) #22	llph (ENSAPOG00000005836)	PEX26 (ENSAPOG00000005858)	ENSAPOG00000005872	ccnd2b (ENSAPOG00000005895)	tigarb (ENSAPOG00000005905)	fgf23 (ENSAPOG00000005970)	fgf6b (ENSAPOG00000005978)	rad51ap1 (ENSAPOG00000006028)	GALNT8 (ENSAPOG00000006242)
Bicolor damselfish	MODERN SPECIES	526												LHFPL3 (ENSSPAG00000019399)	orc5 (ENSSPAG00000019426)	guca1a (ENSSPAG00000019465)	ENSSPAG00000019479 #21	hcls1 (ENSSPAG00000019505) #22	llph (ENSSPAG00000019547)	ENSSPAG00000019560	ENSSPAG00000019564	ccnd2b (ENSSPAG00000019580)	tigarb (ENSSPAG00000019599)	fgf23 (ENSSPAG00000019608)	fgf6b (ENSSPAG00000019649)	rad51ap1 (ENSSPAG00000019667)	GALNT8 (ENSSPAG00000019691)	ADA2 (ENSSPAG00000019706)	atp6v1e1b (ENSSPAG00000019723)	UBE2N (ENSSPAG00000019748)	nudt4b (ENSSPAG00000019764)	pkp2 (ENSSPAG00000019791)	rassf8b (ENSSPAG00000019811)
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.wb	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Carangaria	ANCESTRAL SPECIES	22	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000175357	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Tongue sole	MODERN SPECIES	18	cluap1 (ENSCSEG00000007414)	SEMA3C (ENSCSEG00000007345)	cd36 (ENSCSEG00000007300)	ENSCSEG00000007290	ENSCSEG00000007199	si:dkey-97m3.1 (ENSCSEG00000007156)	ergic2 (ENSCSEG00000007130)	KDM7A (ENSCSEG00000007113)	ndufb2 (ENSCSEG00000007103)	ENSCSEG00000007101	ENSCSEG00000007081	lhfpl3 (ENSCSEG00000007070)	orc5 (ENSCSEG00000007054)	guca1a (ENSCSEG00000007034)	ENSCSEG00000007022 #21	hcls1 (ENSCSEG00000007005) #22	pex26 (ENSCSEG00000007001)	llph (ENSCSEG00000006991)	ENSCSEG00000006980	ccnd2b (ENSCSEG00000006945)	tigarb (ENSCSEG00000006923)	fgf23 (ENSCSEG00000006918)	fgf6b (ENSCSEG00000006910)	rad51ap1 (ENSCSEG00000006902)	ADA2 (ENSCSEG00000006894)	atp6v1e1b (ENSCSEG00000006883)	spic (ENSCSEG00000006869)	ENSCSEG00000006866	mybpc1 (ENSCSEG00000006852)	chpt1 (ENSCSEG00000006843)	gnptab (ENSCSEG00000006807)
Turbot	MODERN SPECIES	11	ENSSMAG00000004262	ENSSMAG00000004196	ENSSMAG00000004165	ENSSMAG00000004142	ENSSMAG00000004087	ENSSMAG00000001342	ENSSMAG00000004028	ENSSMAG00000004068	ENSSMAG00000004000	ndufb2 (ENSSMAG00000021735)	ENSSMAG00000003962	lhfpl3 (ENSSMAG00000033348)	orc5 (ENSSMAG00000003873)	guca1a (ENSSMAG00000003848)	ENSSMAG00000003830 #21	hcls1 (ENSSMAG00000003807) #22	llph (ENSSMAG00000003817)	ENSSMAG00000003764	ENSSMAG00000003743	CCND2 (ENSSMAG00000022611)	ENSSMAG00000003719	ENSSMAG00000030424	FGF6 (ENSSMAG00000003698)	ENSSMAG00000004816	ENSSMAG00000004790	ENSSMAG00000004776	atp6v1e1b (ENSSMAG00000003634)	spic (ENSSMAG00000032704)	ENSSMAG00000037230	mybpc1 (ENSSMAG00000003578)	chpt1 (ENSSMAG00000003564)
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	182	ENSLCAG00010002787	SEMA3C (ENSLCAG00010002862)	cd36 (ENSLCAG00010003153)	ENSLCAG00010003167	ENSLCAG00010003210	si:dkey-97m3.1 (ENSLCAG00010003223)	ergic2 (ENSLCAG00010003236)	KDM7A (ENSLCAG00010003250)	ndufb2 (ENSLCAG00010003270)	ENSLCAG00010003283	lhfpl3 (ENSLCAG00010003293)	orc5 (ENSLCAG00010003300)	guca1a (ENSLCAG00010003308)	GOLGB1 (ENSLCAG00010003312) #21	ENSLCAG00010003317 #22	ENSLCAG00010003319 #22	ENSLCAG00010003321	llph (ENSLCAG00010003324)	ENSLCAG00010003325	ccnd2b (ENSLCAG00010003329)	tigarb (ENSLCAG00010003332)	fgf23 (ENSLCAG00010003337)	fgf6b (ENSLCAG00010003340)
Barramundi perch	MODERN SPECIES	182	mtpn (ENSLCAG00010002786)	ENSLCAG00010002787	SEMA3C (ENSLCAG00010002862)	cd36 (ENSLCAG00010003153)	ENSLCAG00010003167	ENSLCAG00010003210	si:dkey-97m3.1 (ENSLCAG00010003223)	ergic2 (ENSLCAG00010003236)	KDM7A (ENSLCAG00010003250)	ndufb2 (ENSLCAG00010003270)	ENSLCAG00010003283	lhfpl3 (ENSLCAG00010003293)	orc5 (ENSLCAG00010003300)	guca1a (ENSLCAG00010003308)	GOLGB1 (ENSLCAG00010003312) #21	ENSLCAG00010003317 #22	ENSLCAG00010003319 #22	ENSLCAG00010003321	llph (ENSLCAG00010003324)	ENSLCAG00010003325	ccnd2b (ENSLCAG00010003329)	tigarb (ENSLCAG00010003332)	fgf23 (ENSLCAG00010003337)	fgf6b (ENSLCAG00010003340)
Seriola	ANCESTRAL SPECIES	9	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a
Yellowtail amberjack	MODERN SPECIES	2908	ENSSLDG00000018412	SEMA3C (ENSSLDG00000018375)	cd36 (ENSSLDG00000018357)	ENSSLDG00000018323	ENSSLDG00000018277	si:dkey-97m3.1 (ENSSLDG00000018239)	ergic2 (ENSSLDG00000018213)	KDM7A (ENSSLDG00000018185)	ENSSLDG00000018167	ndufb2 (ENSSLDG00000018020)	KMT2E (ENSSLDG00000017928)	lhfpl3 (ENSSLDG00000017902)	orc5 (ENSSLDG00000017832)	guca1a (ENSSLDG00000017794)	GOLGB1 (ENSSLDG00000017757) #21	hcls1 (ENSSLDG00000017728) #22	llph (ENSSLDG00000017708)	pex26 (ENSSLDG00000017694)	ENSSLDG00000017665	ccnd2b (ENSSLDG00000017648)	tigarb (ENSSLDG00000017630)	fgf23 (ENSSLDG00000017616)	fgf6b (ENSSLDG00000017604)	rad51ap1 (ENSSLDG00000017564)	GALNT8 (ENSSLDG00000017417)
Greater amberjack	MODERN SPECIES	60	ENSSDUG00000018905	ENSSDUG00000018914	SEMA3C (ENSSDUG00000018932)	cd36 (ENSSDUG00000018969)	ENSSDUG00000018995	ENSSDUG00000019042	si:dkey-97m3.1 (ENSSDUG00000019227)	ergic2 (ENSSDUG00000019274)	KDM7A (ENSSDUG00000019300)	ndufb2 (ENSSDUG00000019319)	KMT2E (ENSSDUG00000019339)	lhfpl3 (ENSSDUG00000019450)	orc5 (ENSSDUG00000019466)	guca1a (ENSSDUG00000019506)	ENSSDUG00000019520 #21	hcls1 (ENSSDUG00000019528) #22	llph (ENSSDUG00000019552)	pex26 (ENSSDUG00000019558)	ENSSDUG00000019569	ccnd2b (ENSSDUG00000000100)	tigarb (ENSSDUG00000000151)	fgf23 (ENSSDUG00000000184)	fgf6b (ENSSDUG00000000201)	rad51ap1 (ENSSDUG00000000222)	GALNT8 (ENSSDUG00000000286)	ADA2 (ENSSDUG00000000494)	atp6v1e1b (ENSSDUG00000000530)	spic (ENSSDUG00000000538)	ENSSDUG00000000543	mybpc1 (ENSSDUG00000000563)	chpt1 (ENSSDUG00000000642)
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Zig-zag eel	MODERN SPECIES	15	ENSMAMG00000014753	ENSMAMG00000014716	ENSMAMG00000014241	ENSMAMG00000014171	ENSMAMG00000026964	ENSMAMG00000014032	ENSMAMG00000013983	ENSMAMG00000013916	ENSMAMG00000013897	ndufb2 (ENSMAMG00000025833)	ENSMAMG00000013691	lhfpl3 (ENSMAMG00000013670)	orc5 (ENSMAMG00000013596)	guca1a (ENSMAMG00000013567)	ENSMAMG00000013536 #21	hcls1 (ENSMAMG00000013423) #22	llph (ENSMAMG00000028588)	ENSMAMG00000013400	ENSMAMG00000013390	CCND2 (ENSMAMG00000013383)	ENSMAMG00000013365	ENSMAMG00000013352	FGF6 (ENSMAMG00000028148)	rad51ap1 (ENSMAMG00000013332)	ENSMAMG00000013101	ENSMAMG00000013065	atp6v1e1b (ENSMAMG00000013022)	spic (ENSMAMG00000012999)	ENSMAMG00000012991	mybpc1 (ENSMAMG00000012896)	chpt1 (ENSMAMG00000012846)
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Siamese fighting fish	MODERN SPECIES	20	mtpn (ENSBSLG00000001816)	ENSBSLG00000001821	SEMA3C (ENSBSLG00000001883)	cd36 (ENSBSLG00000002013)	ENSBSLG00000002026	ENSBSLG00000002726	si:dkey-97m3.1 (ENSBSLG00000003669)	ergic2 (ENSBSLG00000003712)	KDM7A (ENSBSLG00000003854)	ndufb2 (ENSBSLG00000004008)	ENSBSLG00000004042	lhfpl3 (ENSBSLG00000004092)	orc5 (ENSBSLG00000004118)	guca1a (ENSBSLG00000004278)	ENSBSLG00000004755 #21	hcls1 (ENSBSLG00000004867) #22	llph (ENSBSLG00000005579)	pex26 (ENSBSLG00000005594)	ccnd2b (ENSBSLG00000005701)	tigarb (ENSBSLG00000005718)	fgf23 (ENSBSLG00000005731)	fgf6b (ENSBSLG00000005740)	ndufa12 (ENSBSLG00000005750)	fgd6 (ENSBSLG00000005771)	vezt (ENSBSLG00000005881)	metap2b (ENSBSLG00000005901)	usp44 (ENSBSLG00000005978)	NTN4 (ENSBSLG00000005981)	amdhd1 (ENSBSLG00000005996)	tspan9b (ENSBSLG00000006012)	elapor2b (ENSBSLG00000006020)
Climbing perch	MODERN SPECIES	14	mtpn (ENSATEG00000020989)	ENSATEG00000020979	ENSATEG00000020923	ENSATEG00000020746	ENSATEG00000020696	ENSATEG00000020650	ENSATEG00000020576	ENSATEG00000020540	ENSATEG00000020515	ndufb2 (ENSATEG00000020496)	ENSATEG00000020339	lhfpl3 (ENSATEG00000020307)	orc5 (ENSATEG00000020261)	guca1a (ENSATEG00000020239)	ENSATEG00000020107 #21	hcls1 (ENSATEG00000020058) #22	llph (ENSATEG00000025373)	ENSATEG00000020015	ENSATEG00000019997	CCND2 (ENSATEG00000019979)	ENSATEG00000019958	FGF23 (ENSATEG00000019951)	FGF6 (ENSATEG00000028445)	rad51ap1 (ENSATEG00000019934)	ENSATEG00000028213	ENSATEG00000019918	atp6v1e1b (ENSATEG00000019906)	ENSATEG00000019900	spic (ENSATEG00000019894)	mybpc1 (ENSATEG00000019825)	chpt1 (ENSATEG00000025233)
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.wb	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00730000112347	ENSGT00940000158804	ENSGT00940000166093	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00390000018424	ENSGT00940000155083.b.a.b	ENSGT00390000010221	ENSGT00940000157779	ENSGT00940000156003.l.b	ENSGT00530000063205.B	ENSGT00940000157275.a	ENSGT00390000005848	ENSGT00940000156334.a.b	ENSGT00390000003290	ENSGT00940000155016	ENSGT00940000160526	ENSGT00940000156615.a
Fugu	MODERN SPECIES	9	ENSTRUG00000015891	ENSTRUG00000029244	TULP3 (ENSTRUG00000015873)	rhno1 (ENSTRUG00000022380)	foxm1 (ENSTRUG00000015839)	ENSTRUG00000015747	ergic2 (ENSTRUG00000015717)	KDM7A (ENSTRUG00000015683)	ndufb2 (ENSTRUG00000015668)	ENSTRUG00000015634	lhfpl3 (ENSTRUG00000015627)	orc5 (ENSTRUG00000015583)	guca1a (ENSTRUG00000015564)	GOLGB1 (ENSTRUG00000021250) #21	llph (ENSTRUG00000015435)	hcls1 (ENSTRUG00000015442) #22	ENSTRUG00000015418	ENSTRUG00000015414	CD9 (ENSTRUG00000015400)	tmem243b (ENSTRUG00000015397)	dclre1c (ENSTRUG00000015371)	ENSTRUG00000015177	eri1 (ENSTRUG00000029584)	TMCC3 (ENSTRUG00000015134)	ndufa12 (ENSTRUG00000015119)	fgd6 (ENSTRUG00000022013)	vezt (ENSTRUG00000015078)	metap2b (ENSTRUG00000015010)	usp44 (ENSTRUG00000021755)	ntn4 (ENSTRUG00000014966)	ENSTRUG00000014956
Tetraodon	MODERN SPECIES	11	SEMA3C (ENSTNIG00000011399)	ENSTNIG00000011398	chrm2a (ENSTNIG00000011397)	ptn (ENSTNIG00000011396)	ENSTNIG00000002223	foxm1 (ENSTNIG00000011394)	ENSTNIG00000011393	ergic2 (ENSTNIG00000011392)	kdm7aa (ENSTNIG00000011391)	ndufb2 (ENSTNIG00000011390)	ENSTNIG00000011389	lhfpl3 (ENSTNIG00000002889)	orc5 (ENSTNIG00000002888)	guca1a (ENSTNIG00000002887)	ENSTNIG00000012690 #21	hcls1 (ENSTNIG00000012689) #22	llph (ENSTNIG00000012688)	pex26 (ENSTNIG00000012687)	ENSTNIG00000012686	CD9 (ENSTNIG00000012685)	tmem243b (ENSTNIG00000012684)	dclre1c (ENSTNIG00000012683)	ENSTNIG00000012682	ENSTNIG00000012681	eri1 (ENSTNIG00000012680)	TMCC3 (ENSTNIG00000012679)	ndufa12 (ENSTNIG00000012678)	fgd6 (ENSTNIG00000012677)	vezt (ENSTNIG00000012676)	metap2b (ENSTNIG00000012675)	usp44 (ENSTNIG00000012674)
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.wb	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Ballan wrasse	MODERN SPECIES	511						ENSLBEG00000019248	si:dkey-97m3.1 (ENSLBEG00000019329)	ergic2 (ENSLBEG00000019395)	KDM7A (ENSLBEG00000019455)	ndufb2 (ENSLBEG00000019473)	KMT2E (ENSLBEG00000019523)	lhfpl3 (ENSLBEG00000019671)	orc5 (ENSLBEG00000019688)	guca1a (ENSLBEG00000019736)	ENSLBEG00000019766 #21	hcls1 (ENSLBEG00000019857) #22	llph (ENSLBEG00000019914)	pex26 (ENSLBEG00000019939)	ENSLBEG00000020001
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.wb	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.wb	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.wb	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Large yellow croaker	MODERN SPECIES	491	mtpn (ENSLCRG00005014985)	ENSLCRG00005014984	SEMA3C (ENSLCRG00005014524)	cd36 (ENSLCRG00005014415)	ENSLCRG00005014393	ENSLCRG00005014380	si:dkey-97m3.1 (ENSLCRG00005014371)	ergic2 (ENSLCRG00005014367)	KDM7A (ENSLCRG00005014362)	ndufb2 (ENSLCRG00005014358)	ENSLCRG00005014356	lhfpl3 (ENSLCRG00005014355)	orc5 (ENSLCRG00005013958)	guca1a (ENSLCRG00005013956)	ENSLCRG00005013953 #21	hcls1 (ENSLCRG00005013931) #22	llph (ENSLCRG00005013930)	ENSLCRG00005013929	ENSLCRG00005013928	ccnd2b (ENSLCRG00005013927)	tigarb (ENSLCRG00005013926)	fgf23 (ENSLCRG00005013925)	fgf6b (ENSLCRG00005013924)	rad51ap1 (ENSLCRG00005013923)	GALNT8 (ENSLCRG00005013804)	ADA2 (ENSLCRG00005013793)	atp6v1e1b (ENSLCRG00005013754)	ENSLCRG00005013752	spic (ENSLCRG00005013751)	ENSLCRG00005013750	mybpc1 (ENSLCRG00005010856)
European seabass	MODERN SPECIES	23	ENSDLAG00005026666	ENSDLAG00005020518	CD36 (ENSDLAG00005020211)	ENSDLAG00005020099	ENSDLAG00005019967	ENSDLAG00005019924	ENSDLAG00005019896	ENSDLAG00005019826	ndufb2 (ENSDLAG00005019817)	ENSDLAG00005019803	lhfpl3 (ENSDLAG00005034517)	orc5 (ENSDLAG00005019467)	guca1a (ENSDLAG00005019461)	ENSDLAG00005019454 #21	llph (ENSDLAG00005019388)	hcls1 (ENSDLAG00005019394) #22	ENSDLAG00005030871	CCND2 (ENSDLAG00005019377)	ENSDLAG00005026534	FGF23 (ENSDLAG00005019370)	FGF6 (ENSDLAG00005030019)	rad51ap1 (ENSDLAG00005019357)	ENSDLAG00005019342	ENSDLAG00005019333	spic (ENSDLAG00005019316)	ENSDLAG00005019314	mybpc1 (ENSDLAG00005015940)	chpt1 (ENSDLAG00005015692)	dram1 (ENSDLAG00005015685)	gnptab (ENSDLAG00005015505)	ENSDLAG00005015488
Gilthead seabream	MODERN SPECIES	5	mtpn (ENSSAUG00010017461)	ENSSAUG00010017457	SEMA3C (ENSSAUG00010014028)	cd36 (ENSSAUG00010013560)	ENSSAUG00010013548	ENSSAUG00010013530	si:dkey-97m3.1 (ENSSAUG00010013511)	ergic2 (ENSSAUG00010013507)	KDM7A (ENSSAUG00010013500)	NDUFB2 (ENSSAUG00010013498)	ENSSAUG00010013476	lhfpl3 (ENSSAUG00010013469)	orc5 (ENSSAUG00010013291)	guca1a (ENSSAUG00010013290)	ENSSAUG00010013289 #21	hcls1 (ENSSAUG00010013105) #22	llph (ENSSAUG00010013104)	ENSSAUG00010013102	ENSSAUG00010013101	ccnd2b (ENSSAUG00010013100)	tigarb (ENSSAUG00010013098)	fgf23 (ENSSAUG00010013096)	fgf6b (ENSSAUG00010013095)	rad51ap1 (ENSSAUG00010013093)	GALNT8 (ENSSAUG00010012997)	ADA2 (ENSSAUG00010012988)	atp6v1e1b (ENSSAUG00010012955)	spic (ENSSAUG00010012948)	ENSSAUG00010012945	mybpc1 (ENSSAUG00010012703)	chpt1 (ENSSAUG00010012670)
Perciformes	ANCESTRAL SPECIES	18	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.wb	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.wb	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Stickleback	MODERN SPECIES	3	ENSGACG00000019955	SEMA3C (ENSGACG00000019956)	cd36 (ENSGACG00000019957)	ENSGACG00000019962	ENSGACG00000019967	si:dkey-97m3.1 (ENSGACG00000019970)	ergic2 (ENSGACG00000019973)	KDM7A (ENSGACG00000019975)	ndufb2 (ENSGACG00000019977)	ENSGACG00000019979	lhfpl3 (ENSGACG00000019981)	orc5 (ENSGACG00000019984)	guca1a (ENSGACG00000019986)	ENSGACG00000019987 #21	ENSGACG00000019988	hcls1 (ENSGACG00000019990) #22	llph (ENSGACG00000019992)	ENSGACG00000019993	ppfia2 (ENSGACG00000019995)	ACSS3 (ENSGACG00000019999)	lin7a (ENSGACG00000020007)	myf6 (ENSGACG00000020008)	rps16 (ENSGACG00000020009)	ppp1r12a (ENSGACG00000020012)	pawr (ENSGACG00000020015)	syt1a (ENSGACG00000020017)	cyb5r3 (ENSGACG00000020019)	ENSGACG00000020026	syt10 (ENSGACG00000020031)	tnnt2c (ENSGACG00000020034)	ENSGACG00000020036
Lumpfish	MODERN SPECIES	15	mtpn (ENSCLMG00005022629)	ENSCLMG00005022627	SEMA3C (ENSCLMG00005022619)	cd36 (ENSCLMG00005022530)	ENSCLMG00005022529	ENSCLMG00005022408	si:dkey-97m3.1 (ENSCLMG00005022392)	ERGIC2 (ENSCLMG00005022391)	KDM7A (ENSCLMG00005022389)	ENSCLMG00005022387	ENSCLMG00005022381	lhfpl3 (ENSCLMG00005022376)	orc5 (ENSCLMG00005022358)	guca1a (ENSCLMG00005022355)	ENSCLMG00005022353 #21	hcls1 (ENSCLMG00005022338) #22	llph (ENSCLMG00005022334)	pex26 (ENSCLMG00005022333)	ENSCLMG00005022332	ccnd2b (ENSCLMG00005022331)	tigarb (ENSCLMG00005022330)	fgf23 (ENSCLMG00005022329)	fgf6b (ENSCLMG00005022328)	rad51ap1 (ENSCLMG00005022326)	prdm4 (ENSCLMG00005022325)	tmem209 (ENSCLMG00005022309)	ahcyl2b (ENSCLMG00005022214)	STRIP2 (ENSCLMG00005021625)	ENSCLMG00005021620	DHX57 (ENSCLMG00005021617)	SMKR1 (ENSCLMG00005021614)
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a	ENSGT00940000155057.wb	ENSGT00390000006367.c	ENSGT00530000063113.A.q	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00510000049725	ENSGT00940000165907	ENSGT00940000155180.b.b	ENSGT00940000163946.a	ENSGT00940000160821	ENSGT00940000157821.h.a	ENSGT00940000153414.A	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254
Channel bull blenny	MODERN SPECIES	15	SEMA3C (ENSCGOG00000012145)	cd36 (ENSCGOG00000012920)	ENSCGOG00000013774	ENSCGOG00000014221	si:dkey-97m3.1 (ENSCGOG00000015397)	ergic2 (ENSCGOG00000015826)	KDM7A (ENSCGOG00000015914)	ndufb2 (ENSCGOG00000015977)	ENSCGOG00000015984	ENSCGOG00000016363	lhfpl3 (ENSCGOG00000016364)	orc5 (ENSCGOG00000016369)	guca1a (ENSCGOG00000016456)	ENSCGOG00000016474 #21	llph (ENSCGOG00000016482)	hcls1 (ENSCGOG00000016488) #22	pex26 (ENSCGOG00000016580)	ENSCGOG00000016581	ccnd2b (ENSCGOG00000016583)	tigarb (ENSCGOG00000016586)	fgf23 (ENSCGOG00000016589)	fgf6b (ENSCGOG00000016593)	rad51ap1 (ENSCGOG00000016595)	GALNT8 (ENSCGOG00000016599)	atp6v1e1b (ENSCGOG00000016619)	ENSCGOG00000016908	spic (ENSCGOG00000016911)	ENSCGOG00000016917	mybpc1 (ENSCGOG00000016919)	chpt1 (ENSCGOG00000016948)	gnptab (ENSCGOG00000017075)
Pike perch	MODERN SPECIES	28	ENSSLUG00000014772	SEMA3C (ENSSLUG00000014875)	cd36 (ENSSLUG00000017091)	ENSSLUG00000017106	ENSSLUG00000017122	ENSSLUG00000017164	si:dkey-97m3.1 (ENSSLUG00000017614)	ergic2 (ENSSLUG00000017637)	KDM7A (ENSSLUG00000017653)	ndufb2 (ENSSLUG00000017681)	KMT2E (ENSSLUG00000017688)	lhfpl3 (ENSSLUG00000017694)	orc5 (ENSSLUG00000017729)	guca1a (ENSSLUG00000018011)	ENSSLUG00000018017 #21	hcls1 (ENSSLUG00000018043) #22	llph (ENSSLUG00000018139)	pex26 (ENSSLUG00000018143)	ENSSLUG00000018146	ccnd2b (ENSSLUG00000018150)	tigarb (ENSSLUG00000018156)	fgf23 (ENSSLUG00000018159)	fgf6b (ENSSLUG00000018163)	rad51ap1 (ENSSLUG00000018171)	GALNT8 (ENSSLUG00000018206)	ADA2 (ENSSLUG00000018400)	atp6v1e1b (ENSSLUG00000018403)	spic (ENSSLUG00000018413)	ENSSLUG00000018418	mybpc1 (ENSSLUG00000018517)	chpt1 (ENSSLUG00000020879)
Otomorpha	ANCESTRAL SPECIES	204									ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.k.a	ENSGT00940000156120.a	ENSGT00390000000406	ENSGT00940000155394.i.a	ENSGT00940000158014	ENSGT00510000047886.b	ENSGT00940000157713	ENSGT00940000154980	ENSGT00530000063074.b.b
Clupeiformes	ANCESTRAL SPECIES	62	ENSGT00390000002615	ENSGT01100000263888	ENSGT00940000158990	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00950000182937.B.b	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00940000159750	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT00940000172289	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.k.a	ENSGT00940000156120.a	ENSGT00390000000406	ENSGT00940000155394.i.a	ENSGT00940000158014	ENSGT00510000047886.b	ENSGT00940000157713	ENSGT00940000154980
Atlantic herring	MODERN SPECIES	7	ENSCHAG00000011521	ENSCHAG00000011529	lrp6 (ENSCHAG00000011581)	dusp16 (ENSCHAG00000013968)	crebl2 (ENSCHAG00000013974)	gpr19 (ENSCHAG00000013997)	tbk1 (ENSCHAG00000014015)	eps8a (ENSCHAG00000014301)	PTPRO (ENSCHAG00000014426)	si:cabz01085950.1 (ENSCHAG00000015370)	ENSCHAG00000015395	lhfpl3 (ENSCHAG00000017020)	orc5 (ENSCHAG00000017056)	guca1a (ENSCHAG00000017174)	ENSCHAG00000017197 #21	hcls1 (ENSCHAG00000017216) #22	llph (ENSCHAG00000017286)	ENSCHAG00000017301	ENSCHAG00000017306	plxnb2a.1 (ENSCHAG00000017316)	ENSCHAG00000018199	ENSCHAG00000018216	abcc9 (ENSCHAG00000018288)	kcnj8 (ENSCHAG00000018873)	cmasa (ENSCHAG00000018948)	shisal1a (ENSCHAG00000019055)	ENSCHAG00000019064	smfn (ENSCHAG00000019135)	ARF5 (ENSCHAG00000019154)	gcc1 (ENSCHAG00000019231)	ENSCHAG00000019252
Denticle herring	MODERN SPECIES	6	ENSDCDG00000033431	lrp6 (ENSDCDG00000033133)	dusp16 (ENSDCDG00000033106)	crebl2 (ENSDCDG00000033102)	gpr19 (ENSDCDG00000033104)	tbk1 (ENSDCDG00000033079)	eps8a (ENSDCDG00000032073)	PTPRO (ENSDCDG00000030969)	si:cabz01085950.1 (ENSDCDG00000030919)	ENSDCDG00000030792	DNAH6 (ENSDCDG00000030470)	lhfpl3 (ENSDCDG00000030443)	orc5 (ENSDCDG00000030439)	guca1a (ENSDCDG00000030436)	ENSDCDG00000030434 #21	hcls1 (ENSDCDG00000030354) #22	llph (ENSDCDG00000030344)	ENSDCDG00000030343	ppfia2 (ENSDCDG00000027692)	ACSS3 (ENSDCDG00000027609)	lin7a (ENSDCDG00000027602)	myf5 (ENSDCDG00000027600)	myf6 (ENSDCDG00000027598)	rps16 (ENSDCDG00000027593)	ppp1r12a (ENSDCDG00000027584)	pawr (ENSDCDG00000027583)	ENSDCDG00000027582	syt1a (ENSDCDG00000027575)	nav3 (ENSDCDG00000026354)	ENSDCDG00000026331	ENSDCDG00000026328
Otophysi	ANCESTRAL SPECIES	40	ENSGT00940000158580	ENSGT00940000155878	ENSGT00530000063539.b	ENSGT00730000111164	ENSGT00390000012080	ENSGT00940000153567.a.a.b.b.a	ENSGT00940000153372.A.f	ENSGT00940000159379	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l	ENSGT00940000156120.a	ENSGT00390000000406	ENSGT00940000155394.i.a	ENSGT00940000158014	ENSGT00510000047886.b	ENSGT00940000157713	ENSGT00940000154980	ENSGT00530000063074.b.b
Cyprinoidei	ANCESTRAL SPECIES	67	ENSGT00940000155878	ENSGT00530000063539.b	ENSGT00730000111164	ENSGT00940000155057.wb.f	ENSGT00390000012080	ENSGT00940000153567.a.a.b.b.a	ENSGT00940000153372.A.f	ENSGT00940000159379	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l	ENSGT00940000156120.a	ENSGT00390000000406	ENSGT00940000155394.i.a	ENSGT00940000158014	ENSGT00510000047886.b.ib
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	481	ENSGT00530000063539.b.oc	ENSGT00730000111164.m	ENSGT00940000155057.wb.f.l.a	ENSGT00390000012080.b	ENSGT00940000153567.a.a.b.b.a.b	ENSGT00940000153372.A.f.l	ENSGT00940000159379.e	ENSGT00940000158039.h.a	ENSGT00390000004044.a	ENSGT00940000157862.j	ENSGT00990000203541.a.a.a.a.a.e.b	ENSGT00990000203541.a.a.a.a.a.f	ENSGT00390000009380.b	ENSGT00940000164333.c	ENSGT00730000111007.a.a.j #21	ENSGT00940000158997.k.a #22	ENSGT00940000165344.f	ENSGT01050000244900.a.a.a.a.b.bb.n	ENSGT00940000157479.i	ENSGT00940000153222.a.a.z	ENSGT00950000182959.a.a.b	ENSGT00950000182959.a.b.b.a.i
Cyprininae_a	ANCESTRAL SPECIES	290	ENSGT00730000111164.m	ENSGT00940000155057.wb.f.k	ENSGT00940000155057.wb.f.l.a	ENSGT00390000012080.b	ENSGT00940000153567.a.a.b.b.a.b	ENSGT00940000153372.A.f.l	ENSGT00940000159379.e	ENSGT00940000158039.h.a	ENSGT00390000004044.a	ENSGT00940000157862.j	ENSGT00990000203541.a.a.a.a.a.e.b	ENSGT00990000203541.a.a.a.a.a.f	ENSGT00390000009380.b	ENSGT00940000164333.c	ENSGT00730000111007.a.a.j #21	ENSGT00940000158997.k.a #22	ENSGT00940000165344.f	ENSGT01050000244900.a.a.a.a.b.bb.n	ENSGT00940000157479.i	ENSGT00940000153222.a.a.z	ENSGT00950000182959.a.b.b.a.j.a	ENSGT00390000013067.l	ENSGT00940000156120.a.i	ENSGT00390000000406.k	ENSGT00940000155394.i.a.a	ENSGT00940000158014.m	ENSGT01100000263571.i.a.a.b.b	ENSGT00390000002793.d	ENSGT00950000182839.B.a.a.k.a	ENSGT00390000017990.a	ENSGT00940000156127.t
Common carp reference	MODERN SPECIES	8	ENSCCRG00000039999	ENSCCRG00000079405	ENSCCRG00000039994	mdm2 (ENSCCRG00000043637)	magi2a (ENSCCRG00000064233)	nup107 (ENSCCRG00000033870)	gnai1 (ENSCCRG00000078709)	cd36 (ENSCCRG00000035158)	ENSCCRG00000039382	ENSCCRG00000048750	ENSCCRG00000048741	ENSCCRG00000039272	lhfpl3 (ENSCCRG00000060847)	guca1a (ENSCCRG00000059884)	ENSCCRG00000072639 #21	hcls1 (ENSCCRG00000071219) #22	llph (ENSCCRG00000071942)	ppfia2 (ENSCCRG00000077057)	ENSCCRG00000079907	ACSS3 (ENSCCRG00000070205)	lin7a (ENSCCRG00000002318)	myf6 (ENSCCRG00000002310)	rps16 (ENSCCRG00000071173)	ppp1r12a (ENSCCRG00000017869)	pawr (ENSCCRG00000074321)	syt1a (ENSCCRG00000012658)	nav3 (ENSCCRG00000004716)	ENSCCRG00000018894	ENSCCRG00000073152	ENSCCRG00000055385	ENSCCRG00000059987
Goldfish	MODERN SPECIES	33	ENSCARG00000013472	ENSCARG00000013469	mdm2 (ENSCARG00000013438)	slc35e3 (ENSCARG00000013424)	magi2a (ENSCARG00000010141)	nup107 (ENSCARG00000008124)	gnai1 (ENSCARG00000007987)	cd36 (ENSCARG00000007905)	ENSCARG00000007293	KDM7A (ENSCARG00000007170)	ndufb2 (ENSCARG00000007160)	ENSCARG00000007049	lhfpl3 (ENSCARG00000007005)	guca1a (ENSCARG00000006988)	ENSCARG00000006951 #21	hcls1 (ENSCARG00000006919) #22	ppfia2 (ENSCARG00000004948)	ACSS3 (ENSCARG00000004730)	ENSCARG00000004704	TRHDE (ENSCARG00000004659)	cpm (ENSCARG00000004630)	usp6nl (ENSCARG00000004449)	ENSCARG00000004427	celf2 (ENSCARG00000002651)	ENSCARG00000002524	gata3 (ENSCARG00000002514)	taf3 (ENSCARG00000002505)	atp5f1c (ENSCARG00000002491)	kin (ENSCARG00000002460)	itih2 (ENSCARG00000001622)	ITIH5 (ENSCARG00000001507)
Cyprininae	ANCESTRAL SPECIES	94	ENSGT00940000155878.f.a	ENSGT00530000063539.b.nc	ENSGT00730000111164.n	ENSGT00940000155057.wb.f.l.b	ENSGT00390000012080.a	ENSGT00940000153567.a.a.b.b.a.a	ENSGT00940000153372.A.f.k	ENSGT00940000159379.f	ENSGT00940000158039.h.b	ENSGT00390000004044.b	ENSGT00940000157862.i	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00390000009380.a	ENSGT00940000164333.d	ENSGT00730000111007.a.a.i #21	ENSGT00940000158997.k.b #22	ENSGT00940000165344.e	ENSGT01050000244900.a.a.a.a.b.bb.m.b	ENSGT00940000157479.j	ENSGT00940000153222.a.a.y	ENSGT00950000182959.a.a.a	ENSGT00950000182959.a.b.b.a.j	ENSGT00390000013067.l	ENSGT00940000156120.a.i	ENSGT00390000000406.k	ENSGT00940000155394.i.a.a	ENSGT00940000158014.m	ENSGT00510000047886.b.ib.a	ENSGT00390000002793.d	ENSGT00950000182839.B.a.a.k.a	ENSGT00390000017990.a
Goldfish	MODERN SPECIES	21	TRHDE (ENSCARG00000013157)	mdm2 (ENSCARG00000013140)	slc35e3 (ENSCARG00000013136)	ENSCARG00000013134	magi2a (ENSCARG00000012323)	gnai1 (ENSCARG00000012213)	cd36 (ENSCARG00000012095)	SEMA3C (ENSCARG00000011766)	KDM7A (ENSCARG00000011660)	ndufb2 (ENSCARG00000011648)	ENSCARG00000011636	lhfpl3 (ENSCARG00000011623)	orc5 (ENSCARG00000011442)	guca1a (ENSCARG00000011420)	GOLGB1 (ENSCARG00000011371) #21	hcls1 (ENSCARG00000011091) #22	llph (ENSCARG00000011062)	ppfia2 (ENSCARG00000008457)	ACSS3 (ENSCARG00000007733)	lin7a (ENSCARG00000007657)	myf5 (ENSCARG00000007648)	myf6 (ENSCARG00000007640)	RPS16 (ENSCARG00000007629)	ppp1r12a (ENSCARG00000007240)	pawr (ENSCARG00000007222)	syt1a (ENSCARG00000007182)	bcat1 (ENSCARG00000007169)	lrmp (ENSCARG00000007098)	dnai7 (ENSCARG00000007038)	sox5 (ENSCARG00000004446)	ETNK1 (ENSCARG00000004230)
Cyprininae_a	ANCESTRAL SPECIES	174	ENSGT00940000155878.f.a	ENSGT00530000063539.b.nc	ENSGT00730000111164.n	ENSGT00940000155057.wb.f.l.b	ENSGT00390000012080.a	ENSGT00940000153567.a.a.b.b.a.a	ENSGT00940000153372.A.f.k	ENSGT00940000159379.f	ENSGT00940000158039.h.b	ENSGT00390000004044.b	ENSGT00940000157862.i	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00390000009380.a	ENSGT00940000164333.d	ENSGT00730000111007.a.a.i #21	ENSGT00940000158997.k.b #22	ENSGT00940000165344.e	ENSGT01050000244900.a.a.a.a.b.bb.m.b	ENSGT00940000157479.j	ENSGT00940000153222.a.a.y	ENSGT00950000182959.a.a.b	ENSGT00950000182959.a.b.b.a.i	ENSGT00950000182959.a.a.a	ENSGT00950000182959.a.b.b.a.j.b	ENSGT00940000156120.a.j	ENSGT00390000000406.l	ENSGT00940000155394.i.a.b	ENSGT00940000158014.n
Common carp reference	MODERN SPECIES	36	ENSCCRG00000016835	mdm2 (ENSCCRG00000022032)	slc35e3 (ENSCCRG00000016880)	magi2a (ENSCCRG00000035406)	nup107 (ENSCCRG00000077501)	cd36 (ENSCCRG00000010508)	gnai1 (ENSCCRG00000033760)	ENSCCRG00000033639	ENSCCRG00000035796	ndufb2 (ENSCCRG00000072248)	ENSCCRG00000039177	orc5 (ENSCCRG00000001236)	lhfpl3 (ENSCCRG00000058495)	guca1a (ENSCCRG00000070485)	ENSCCRG00000001214 #21	hcls1 (ENSCCRG00000001201) #22	llph (ENSCCRG00000057054)	ppfia2 (ENSCCRG00000070855)	ACSS3 (ENSCCRG00000072702)	lin7a (ENSCCRG00000070932)	ENSCCRG00000002290	myf5 (ENSCCRG00000031947)	myf6 (ENSCCRG00000052812)	ENSCCRG00000031955	ppp1r12a (ENSCCRG00000031966)	pawr (ENSCCRG00000017856)	syt1a (ENSCCRG00000060462)	nav3 (ENSCCRG00000003878)	ENSCCRG00000075007	ENSCCRG00000082448	ENSCCRG00000003610
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000158997.l #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000158997.l #22
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	3676																ENSSGRG00000002816 #22
Golden-line barbel	MODERN SPECIES	1061												ENSSGRG00000016045	DOK7 (ENSSGRG00000016047)	ENSSGRG00000016053	ENSSGRG00000016054	hcls1 (ENSSGRG00000016058) #22	ENSSGRG00000016059
Zebrafish	MODERN SPECIES	19	TRHDE (ENSDARG00000109358)	mdm2 (ENSDARG00000033443)	slc35e3 (ENSDARG00000045493)	magi2a (ENSDARG00000021590)	nup107 (ENSDARG00000016010)	gnai1 (ENSDARG00000021647)	cd36 (ENSDARG00000032639)	SEMA3C (ENSDARG00000034300)	kdm7aa (ENSDARG00000018111)	ndufb2 (ENSDARG00000045490)	KMT2E (ENSDARG00000007523)	lhfpl3 (ENSDARG00000021595)	orc5 (ENSDARG00000021579)	guca1a (ENSDARG00000010454)	ENSDARG00000061951 #21	hcls1 (ENSDARG00000012729) #22	llph (ENSDARG00000055360)	ppfia2 (ENSDARG00000013000)	ACSS3 (ENSDARG00000032218)	lin7a (ENSDARG00000013414)	myf5 (ENSDARG00000007277)	myf6 (ENSDARG00000029830)	rps16 (ENSDARG00000045487)	ppp1r12a (ENSDARG00000010784)	pawr (ENSDARG00000045486)	syt1a (ENSDARG00000030614)	nav3 (ENSDARG00000005476)	ENSDARG00000090277	ENSDARG00000090038	ENSDARG00000114678	ENSDARG00000055245
Characiphysae	ANCESTRAL SPECIES	67	ENSGT00940000155878.j	ENSGT00530000063539.b	ENSGT00730000111164	ENSGT00390000012080	ENSGT00940000153567.a.a.b.b.a	ENSGT00940000153372.A.f	ENSGT00940000159379	ENSGT00940000158039.h	ENSGT00990000204681	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l	ENSGT00940000156120.a.l	ENSGT00390000000406	ENSGT00940000155394.i.a	ENSGT00940000158014	ENSGT00940000154980	ENSGT00530000063074.b.b	ENSGT00940000156622	ENSGT00940000153362.a
Channel catfish	MODERN SPECIES	10	SEMA3C (ENSIPUG00000024327)	ENSIPUG00000024237	ENSIPUG00000024236	ENSIPUG00000024234	ENSIPUG00000024233	ENSIPUG00000024232	ENSIPUG00000024230	ENSIPUG00000024229	KDM7A (ENSIPUG00000024226)	ndufb2 (ENSIPUG00000024224)	ENSIPUG00000024222	lhfpl3 (ENSIPUG00000024221)	orc5 (ENSIPUG00000024220)	guca1a (ENSIPUG00000024219)	ENSIPUG00000024218 #21	hcls1 (ENSIPUG00000024217) #22	ENSIPUG00000024216	ENSIPUG00000024215	ENSIPUG00000024213	ENSIPUG00000024212	ENSIPUG00000024211	ENSIPUG00000024210	ENSIPUG00000024209	ENSIPUG00000024208	ENSIPUG00000024207	ENSIPUG00000024206	ENSIPUG00000024174	slc26a5 (ENSIPUG00000024171)	psmc2 (ENSIPUG00000024168)	prdm4 (ENSIPUG00000024162)	akr1b1.2 (ENSIPUG00000024151)
Characiphysae_b	ANCESTRAL SPECIES	161	ENSGT00940000158580	ENSGT00940000155878.j	ENSGT00530000063539.b	ENSGT00730000111164	ENSGT00390000012080	ENSGT00940000153567.a.a.b.b.a	ENSGT00940000153372.A.f	ENSGT00940000159379	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l	ENSGT00940000156120.a.l	ENSGT00390000000406	ENSGT00940000155394.i.a	ENSGT00940000158014
Electric eel	MODERN SPECIES	24	mdm2 (ENSEEEG00000024537)	slc35e3 (ENSEEEG00000024536)	nup107 (ENSEEEG00000024527)	ENSEEEG00000024526	magi2a (ENSEEEG00000024524)	gnai1 (ENSEEEG00000024520)	cd36 (ENSEEEG00000024515)	SEMA3C (ENSEEEG00000024506)	KDM7A (ENSEEEG00000024481)	ndufb2 (ENSEEEG00000024480)	ENSEEEG00000024476	lhfpl3 (ENSEEEG00000024474)	orc5 (ENSEEEG00000024470)	guca1a (ENSEEEG00000024468)	ENSEEEG00000024467 #21	hcls1 (ENSEEEG00000024466) #22	llph (ENSEEEG00000024465)	ppfia2 (ENSEEEG00000024464)	ACSS3 (ENSEEEG00000024463)	lin7a (ENSEEEG00000024462)	ENSEEEG00000024461	SRGAP3 (ENSEEEG00000024459)	rad18 (ENSEEEG00000024458)	oxtra (ENSEEEG00000024457)	cav3 (ENSEEEG00000024456)	ENSEEEG00000024455	ENSEEEG00000024453	parp3 (ENSEEEG00000024451)	GRM2 (ENSEEEG00000024450)	tex264a (ENSEEEG00000024449)	fancd2 (ENSEEEG00000024447)
Characoidei	ANCESTRAL SPECIES	182	ENSGT00940000158580	ENSGT00940000155878.j	ENSGT00530000063539.b	ENSGT00730000111164	ENSGT00390000012080	ENSGT00940000153567.a.a.b.b.a	ENSGT00940000153372.A.f	ENSGT00940000159379	ENSGT00940000158039.h	ENSGT00390000004044	ENSGT00940000157862	ENSGT00990000203541.a.a.a.a.a	ENSGT00390000009380	ENSGT00940000164333	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00940000165344	ENSGT01050000244900.a.a.a.a.b.bb	ENSGT00940000157479	ENSGT00940000153222.a.a	ENSGT00950000182959.a.a	ENSGT00950000182959.a.b.b.a	ENSGT00390000013067.l	ENSGT00940000156120.a.l	ENSGT00390000000406	ENSGT00940000155394.i.a	ENSGT00940000158014
Mexicana tetra	MODERN SPECIES	22	alyref (ENSAMXG00000007359)	arhgdia (ENSAMXG00000007366)	cdr2l (ENSAMXG00000007372)	cd36 (ENSAMXG00000006720)	SEMA3C (ENSAMXG00000006459)	ENSAMXG00000041110	KDM7A (ENSAMXG00000006392)	ndufb2 (ENSAMXG00000006366)	ENSAMXG00000037828	ENSAMXG00000031350	lhfpl3 (ENSAMXG00000032533)	ENSAMXG00000037520	orc5 (ENSAMXG00000006161)	guca1a (ENSAMXG00000006082)	ENSAMXG00000006063 #21	hcls1 (ENSAMXG00000006045) #22	llph (ENSAMXG00000030053)	ppfia2 (ENSAMXG00000006001)	LIN7B (ENSAMXG00000035915)	myf5 (ENSAMXG00000000428)	myf6 (ENSAMXG00000000425)	rps16 (ENSAMXG00000033866)	ppp1r12a (ENSAMXG00000000386)	pawr (ENSAMXG00000039462)	syt1a (ENSAMXG00000000351)	ENSAMXG00000036051	nav3 (ENSAMXG00000016811)	ENSAMXG00000036999	ENSAMXG00000039430	ENSAMXG00000036395	ENSAMXG00000030619
Red-bellied piranha	MODERN SPECIES	131	mdm2 (ENSPNAG00000009335)	slc35e3 (ENSPNAG00000009355)	nup107 (ENSPNAG00000009424)	magi2a (ENSPNAG00000009557)	gnai1 (ENSPNAG00000009611)	cd36 (ENSPNAG00000009647)	SEMA3C (ENSPNAG00000009750)	ENSPNAG00000009767	KDM7A (ENSPNAG00000009787)	ndufb2 (ENSPNAG00000009809)	KMT2E (ENSPNAG00000010029)	lhfpl3 (ENSPNAG00000010077)	orc5 (ENSPNAG00000010113)	guca1a (ENSPNAG00000010135)	GOLGB1 (ENSPNAG00000010210) #21	hcls1 (ENSPNAG00000010278) #22	llph (ENSPNAG00000010300)
Reedfish	MODERN SPECIES		slc25a3b (ENSECRG00000001704)	ENSECRG00000001746	ENSECRG00000001770	ENSECRG00000001786	ENSECRG00000001802	szl (ENSECRG00000001811)	rint1 (ENSECRG00000001829)	pus7 (ENSECRG00000001862)	SRPK2 (ENSECRG00000001945)	KMT2E (ENSECRG00000002060)	lhfpl3 (ENSECRG00000002129)	orc5 (ENSECRG00000002151)	RELN (ENSECRG00000002239)	ENSECRG00000002448	guca1a (ENSECRG00000002460)	hcls1 (ENSECRG00000002493) #22	plxnb2b (ENSECRG00000002524)	ENSECRG00000002551	ENSECRG00000002564	panx2 (ENSECRG00000002577)	MOV10L1 (ENSECRG00000002596)	ENSECRG00000002631	mlc1 (ENSECRG00000002652)	osgep (ENSECRG00000002682)	apex1 (ENSECRG00000002702)	ENSECRG00000002713	TUBGCP6 (ENSECRG00000002726)	trabd (ENSECRG00000002747)	ENSECRG00000002758	ENSECRG00000002765	shisal1a (ENSECRG00000002773)