Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00390000016956 #7	ENSGT00940000157731 #8	ENSGT00970000193372.b #9	ENSGT00390000010895 #10	ENSGT00390000013776 #11	ENSGT00940000155954.a #12	ENSGT01030000234582.e.a #13	ENSGT00530000063489.a #14	ENSGT00940000159500 #15	ENSGT00940000166595.a	ENSGT00940000156504 #16	ENSGT00940000156948.f #17	ENSGT00940000159765 #19	ENSGT00940000158471 #20	ENSGT00390000005935 #21	ENSGT00940000156702.b #22	ENSGT00390000016940.c.b #23	ENSGT01050000244857.B.b #24	ENSGT00940000159052 #25	ENSGT00940000157018 #26	ENSGT00940000161126 #27	ENSGT00940000155522 #28	ENSGT00390000003164 #29	ENSGT00390000008124	ENSGT00940000154095.b.b #30	ENSGT00940000160220 #31	ENSGT00950000183165.a #32	ENSGT00550000075037 #33	ENSGT00950000182942.a.b #34	ENSGT00390000005911 #35	ENSGT00390000014839.b #36
Hystricomorpha_a	ANCESTRAL SPECIES	32	ENSGT00940000158424	ENSGT00390000016956 #7	ENSGT00940000157731 #8	ENSGT00970000193372.b #9	ENSGT00390000010895 #10	ENSGT00390000013776 #11	ENSGT00940000155954.a #12	ENSGT01030000234582.e.a #13	ENSGT00530000063489.a #14	ENSGT00940000159500 #15	ENSGT00940000156504 #16	ENSGT00940000156948.f #17	ENSGT00940000159765 #19	ENSGT00940000158471 #20	ENSGT00390000005935 #21	ENSGT00940000156702.b #22	ENSGT00390000016940.c.b #23	ENSGT01050000244857.B.b #24	ENSGT00940000159052 #25	ENSGT00940000157018 #26	ENSGT00940000161126 #27	ENSGT00940000155522 #28	ENSGT00390000003164 #29	ENSGT00390000008124	ENSGT00940000154095.b.b #30	ENSGT00940000160220 #31	ENSGT00950000183165.a #32	ENSGT00550000075037 #33	ENSGT00950000182942.a.b #34	ENSGT00390000005911 #35	ENSGT00390000014839.b #36
Guinea pig	MODERN SPECIES	89	MRPL44 (ENSCPOG00000026825) #7	WDFY1 (ENSCPOG00000033757) #8	AP1S3 (ENSCPOG00000040002) #9	SCG2 (ENSCPOG00000009801) #10	KCNE4 (ENSCPOG00000039960) #11	ACSL3 (ENSCPOG00000004250) #12	MOGAT1 (ENSCPOG00000013573) #13	FARSB (ENSCPOG00000013109) #14	SGPP2 (ENSCPOG00000002109) #15	PAX3 (ENSCPOG00000006276) #16	EPHA4 (ENSCPOG00000011048) #17	ENSCPOG00000026421 #18	SLC4A3 (ENSCPOG00000012401) #19	STK11IP (ENSCPOG00000023776) #20	INHA (ENSCPOG00000004459) #21	OBSL1 (ENSCPOG00000009420) #22	ENSCPOG00000034600 #23	CHPF (ENSCPOG00000024521) #24	ASIC4 (ENSCPOG00000021247) #25	GMPPA (ENSCPOG00000002466) #26	ENSCPOG00000002460 #27	DES (ENSCPOG00000002458) #28	DNPEP (ENSCPOG00000002790) #29	PTPRN (ENSCPOG00000004612) #30	DNAJB2 (ENSCPOG00000004607) #31	TUBA4A (ENSCPOG00000037151) #32	STK16 (ENSCPOG00000004600) #33	GLB1L (ENSCPOG00000004595) #34	ANKZF1 (ENSCPOG00000004593) #35	ATG9A (ENSCPOG00000025686) #36	ABCB6 (ENSCPOG00000004587) #37
Hystricomorpha_b	ANCESTRAL SPECIES	28	ENSGT00940000158424	ENSGT00390000016956 #7	ENSGT00940000157731 #8	ENSGT00970000193372.b #9	ENSGT00390000010895 #10	ENSGT00390000013776 #11	ENSGT00940000155954.a #12	ENSGT01030000234582.e.a #13	ENSGT00530000063489.a #14	ENSGT00940000159500 #15	ENSGT00940000156504 #16	ENSGT00940000156948.f #17	ENSGT00940000159765 #19	ENSGT00940000158471 #20	ENSGT00390000005935 #21	ENSGT00940000156702.b #22	ENSGT00390000016940.c.b #23	ENSGT01050000244857.B.b #24	ENSGT00940000159052 #25	ENSGT00940000157018 #26	ENSGT00940000161126 #27	ENSGT00940000155522 #28	ENSGT00390000003164 #29	ENSGT00390000008124	ENSGT00940000154095.b.b #30	ENSGT00940000160220 #31	ENSGT00950000183165.a #32	ENSGT00550000075037 #33	ENSGT00950000182942.a.b #34	ENSGT00390000005911 #35	ENSGT00390000014839.b #36
Long-tailed chinchilla	MODERN SPECIES	160	MRPL44 (ENSCLAG00000013842) #7	WDFY1 (ENSCLAG00000008029) #8	AP1S3 (ENSCLAG00000014092) #9	SCG2 (ENSCLAG00000017835) #10	KCNE4 (ENSCLAG00000010941) #11	ACSL3 (ENSCLAG00000016025) #12	ENSCLAG00000012328	MOGAT1 (ENSCLAG00000009613) #13	FARSB (ENSCLAG00000011954) #14	SGPP2 (ENSCLAG00000013450) #15	PAX3 (ENSCLAG00000013641) #16	EPHA4 (ENSCLAG00000007092) #17	SLC4A3 (ENSCLAG00000007516) #19	STK11IP (ENSCLAG00000011170) #20	INHA (ENSCLAG00000008900) #21	OBSL1 (ENSCLAG00000015313) #22	TMEM198 (ENSCLAG00000016019) #23	CHPF (ENSCLAG00000007193) #24	ASIC4 (ENSCLAG00000008013) #25	GMPPA (ENSCLAG00000007588) #26	SPEG (ENSCLAG00000008508) #27	DES (ENSCLAG00000013621) #28	DNPEP (ENSCLAG00000009422) #29	ENSCLAG00000007704	PTPRN (ENSCLAG00000009207) #30	DNAJB2 (ENSCLAG00000014535) #31	TUBA4A (ENSCLAG00000011603) #32	STK16 (ENSCLAG00000010421) #33	GLB1L (ENSCLAG00000007592) #34	ANKZF1 (ENSCLAG00000008961) #35	ATG9A (ENSCLAG00000008533) #36
Degu	MODERN SPECIES	137	ENSODEG00000005931	SCG2 (ENSODEG00000005187) #10	ENSODEG00000005263 #11	ACSL3 (ENSODEG00000005596) #12	MOGAT1 (ENSODEG00000007108) #13	ENSODEG00000019468	FARSB (ENSODEG00000005451) #14	SGPP2 (ENSODEG00000005491) #15	PAX3 (ENSODEG00000007145) #16	ENSODEG00000007595	EPHA4 (ENSODEG00000007794) #17	ENSODEG00000019432	SLC4A3 (ENSODEG00000008058) #19	STK11IP (ENSODEG00000006046) #20	INHA (ENSODEG00000006794) #21	OBSL1 (ENSODEG00000007087) #22	TMEM198 (ENSODEG00000006314) #23	CHPF (ENSODEG00000006369) #24	ASIC4 (ENSODEG00000008072) #25	ENSODEG00000007610 #26	ENSODEG00000005456 #27	DES (ENSODEG00000005722) #28	DNPEP (ENSODEG00000007870) #29	ENSODEG00000006500	ENSODEG00000019355	PTPRN (ENSODEG00000006545) #30	DNAJB2 (ENSODEG00000006729) #31	TUBA4A (ENSODEG00000007381) #32	STK16 (ENSODEG00000006054) #33	GLB1L (ENSODEG00000006656) #34	ENSODEG00000006309 #35
Naked mole-rat female	MODERN SPECIES	17	AP1S3 (ENSHGLG00000047492) #9	SCG2 (ENSHGLG00000021137) #10	KCNE4 (ENSHGLG00000046993) #11	ENSHGLG00000015953 #12	FARSB (ENSHGLG00000015965) #14	SGPP2 (ENSHGLG00000041213) #15	ENSHGLG00000032427	PAX3 (ENSHGLG00000017244) #16	ENSHGLG00000047135	ENSHGLG00000018932 #17	ENSHGLG00000037518	ENSHGLG00000046904	SLC4A3 (ENSHGLG00000015552) #19	STK11IP (ENSHGLG00000009647) #20	ENSHGLG00000015725 #21	OBSL1 (ENSHGLG00000018303) #22	TMEM198 (ENSHGLG00000015474) #23	CHPF (ENSHGLG00000041025) #24	ASIC4 (ENSHGLG00000018373) #25	GMPPA (ENSHGLG00000014929) #26	ENSHGLG00000032408	SPEG (ENSHGLG00000014231) #27	DES (ENSHGLG00000009885) #28	DNPEP (ENSHGLG00000016589) #29	ENSHGLG00000013131	PTPRN (ENSHGLG00000005174) #30	DNAJB2 (ENSHGLG00000009929) #31	ENSHGLG00000040743	TUBA4A (ENSHGLG00000010691) #32	STK16 (ENSHGLG00000042503) #33	GLB1L (ENSHGLG00000017098) #34