Glires ANCESTRAL SPECIES 5 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT01000000215059 #25 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931 ENSGT00940000154519.g.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000175246 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Rodentia ANCESTRAL SPECIES 6 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT01000000215059 #25 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154519.g.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000175246 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Rodentia_A ANCESTRAL SPECIES 26 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT01000000215059 #25 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154931.c.a.b ENSGT00940000154519.g.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Sciuridae ANCESTRAL SPECIES 1 ENSGT00940000163682 ENSGT00940000163314 ENSGT00940000163016 ENSGT00940000162298 ENSGT00940000163102 ENSGT00940000159644 ENSGT00940000163521 ENSGT00940000161576 ENSGT00940000163165 ENSGT00940000163486 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00390000012138.a.b.t.ab ENSGT00940000156211.b #24 ENSGT01000000215059 #25 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154931.c.a.b ENSGT00940000154519.g.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 Marmotini ANCESTRAL SPECIES 121 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT01000000215059 #25 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931.c.b Marmotini_b ANCESTRAL SPECIES 234 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT01000000215059 #25 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931.c.b Arctic ground squirrel MODERN SPECIES 204 ENSUPAG00010005126 #13 ENSUPAG00010005065 #14 ENSUPAG00010004463 #15 DUSP22 (ENSUPAG00010004416) #16 IRF4 (ENSUPAG00010004398) #17 ENSUPAG00010004391 #18 EXOC2 (ENSUPAG00010004362) #19 FOXQ1 (ENSUPAG00010004342) #20 FOXF2 (ENSUPAG00010004332) #21 FOXC1 (ENSUPAG00010004330) #22 GMDS (ENSUPAG00010004323) #23 MYLK4 (ENSUPAG00010004253) #24 ENSUPAG00010004244 #25 WRNIP1 (ENSUPAG00010004233) #26 SERPINB1 (ENSUPAG00010004225) #27 Eurasian red squirrel MODERN SPECIES 16 ENSSVLG00005014208 ENSSVLG00005014265 ENSSVLG00005014308 ENSSVLG00005014343 ENSSVLG00005014389 ENSSVLG00005014442 ENSSVLG00005014463 #16 IRF4 (ENSSVLG00005014508) #17 EXOC2 (ENSSVLG00005014600) #19 HUS1B (ENSSVLG00005014653) #18 ENSSVLG00005014684 ENSSVLG00005014698 ENSSVLG00005014724 FOXQ1 (ENSSVLG00005014773) #20 FOXF2 (ENSSVLG00005014790) #21 FOXC1 (ENSSVLG00005014837) #22 GMDS (ENSSVLG00005014861) #23 ENSSVLG00005006132 MYLK4 (ENSSVLG00005006200) #24 ENSSVLG00005006323 #25 WRNIP1 (ENSSVLG00005006348) #26 SERPINB1 (ENSSVLG00005006417) #27 ENSSVLG00005006449 ENSSVLG00005006719 ENSSVLG00005007366 SERPINB6 (ENSSVLG00005007395) #14 NQO2 (ENSSVLG00005007475) RIPK1 (ENSSVLG00005007529) ENSSVLG00005007569 TUBB2A (ENSSVLG00005007615) TUBB2B (ENSSVLG00005007652) Hystricomorpha ANCESTRAL SPECIES 42 ENSGT00940000163016 ENSGT00940000162298 ENSGT00940000163102 ENSGT00940000159644.x ENSGT00940000163521 ENSGT00940000161576 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.b ENSGT00940000164849 ENSGT00940000160281 ENSGT00940000153125.B ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT01000000215059 #25 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154519.g.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 ENSGT00390000004735.B.b Hystricomorpha_a ANCESTRAL SPECIES 48 ENSGT00940000162298 ENSGT00940000163102 ENSGT00940000159644.w ENSGT00940000163521 ENSGT00940000161576 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.b ENSGT00940000164849 ENSGT00940000160281 ENSGT00940000153125.C ENSGT01100000263506.a.e.a.a.a.a.b.b ENSGT01100000263474.a.b.b.f ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154519.g.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 ENSGT00390000004735.B.b ENSGT00940000155562 Hystricomorpha_b ANCESTRAL SPECIES 58 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154519.g.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 ENSGT00940000155562 ENSGT00940000154543.b Degu MODERN SPECIES 64 ENSODEG00000019469 ENSODEG00000019426 ZNF184 (ENSODEG00000008565) PRSS16 (ENSODEG00000007095) ENSODEG00000019617 ENSODEG00000019561 ENSODEG00000019618 ENSODEG00000006799 ENSODEG00000006390 ENSODEG00000007570 DUSP22 (ENSODEG00000006703) #16 IRF4 (ENSODEG00000007674) #17 ENSODEG00000019672 EXOC2 (ENSODEG00000006797) #19 FOXF2 (ENSODEG00000007607) #21 FOXC1 (ENSODEG00000006912) #22 ENSODEG00000007557 GMDS (ENSODEG00000009960) #23 MYLK4 (ENSODEG00000006897) #24 WRNIP1 (ENSODEG00000006805) #26 SERPINB1 (ENSODEG00000010241) #27 ENSODEG00000006906 ENSODEG00000006648 ENSODEG00000006244 SERPINB6 (ENSODEG00000008291) #14 NQO2 (ENSODEG00000006400) RIPK1 (ENSODEG00000007668) BPHL (ENSODEG00000008397) TUBB2A (ENSODEG00000006689) ENSODEG00000006037 ENSODEG00000006987 Naked mole-rat female MODERN SPECIES 28 ENSHGLG00000011763 ENSHGLG00000040689 ENSHGLG00000034563 ENSHGLG00000039066 ENSHGLG00000046877 HIST1H4I (ENSHGLG00000036883) ENSHGLG00000033476 ENSHGLG00000008379 #16 IRF4 (ENSHGLG00000008061) #17 EXOC2 (ENSHGLG00000008005) #19 ENSHGLG00000044630 FOXQ1 (ENSHGLG00000007951) #20 FOXF2 (ENSHGLG00000007914) #21 FOXC1 (ENSHGLG00000040750) #22 GMDS (ENSHGLG00000014454) #23 ENSHGLG00000033368 ENSHGLG00000014288 #24 ENSHGLG00000040911 #25 WRNIP1 (ENSHGLG00000014216) #26 SERPINB1 (ENSHGLG00000032738) #27 ENSHGLG00000017487 SERPINB6 (ENSHGLG00000015274) #14 ENSHGLG00000045779 RIPK1 (ENSHGLG00000008330) BPHL (ENSHGLG00000008018) ENSHGLG00000043950 TUBB2B (ENSHGLG00000007696) ENSHGLG00000007366 SLC22A23 (ENSHGLG00000007033) Rodentia_B ANCESTRAL SPECIES 8 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT01000000215059 #25 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154519.g.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000175246 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Kangaroo rat MODERN SPECIES 351 Dusp22 (ENSDORG00000007227) #16 Irf4 (ENSDORG00000014895) #17 Exoc2 (ENSDORG00000008782) #19 Foxf2 (ENSDORG00000001552) #21 Foxc1 (ENSDORG00000006796) #22 Gmds (ENSDORG00000006797) #23 Mylk4 (ENSDORG00000000510) #24 Wrnip1 (ENSDORG00000003946) #26 ENSDORG00000003777 #27 ENSDORG00000026119 #27 ENSDORG00000027278 ENSDORG00000001371 Nqo2 (ENSDORG00000010390) Ripk1 (ENSDORG00000010392) ENSDORG00000029944 ENSDORG00000011196 ENSDORG00000028660 Cdyl (ENSDORG00000002812) ENSDORG00000023689 ENSDORG00000004072 Myomorpha ANCESTRAL SPECIES 11 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT01000000215059 #25 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154519.g.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000175246 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Lesser Egyptian jerboa MODERN SPECIES 129 Dusp22 (ENSJJAG00000019867) #16 Irf4 (ENSJJAG00000019182) #17 ENSJJAG00000017878 #19 Foxf2 (ENSJJAG00000017530) #21 ENSJJAG00000015833 #22 Gmds (ENSJJAG00000015490) #23 ENSJJAG00000013456 #24 Wrnip1 (ENSJJAG00000011299) #26 ENSJJAG00000010900 #27 ENSJJAG00000017382 ENSJJAG00000015735 #14 Nqo2 (ENSJJAG00000015012) Ripk1 (ENSJJAG00000013771) Bphl (ENSJJAG00000012949) Tubb2b (ENSJJAG00000011739) Psmg4 (ENSJJAG00000011408) Slc22a23 (ENSJJAG00000005711) Pxdc1 (ENSJJAG00000012785) Prpf4b (ENSJJAG00000011217) ENSJJAG00000010338 Muroidea ANCESTRAL SPECIES 15 ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT01000000215059 #25 ENSGT00390000008538 #26 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154519.g.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000175246 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Upper Galilee mountains blind mole rat MODERN SPECIES 960 Agtr1a (ENSNGAG00000001950) Uqcrfs1 (ENSNGAG00000001109) Dusp22 (ENSNGAG00000021364) #16 Irf4 (ENSNGAG00000020771) #17 ENSNGAG00000019248 #19 ENSNGAG00000017632 Foxq1 (ENSNGAG00000011384) #20 Foxf2 (ENSNGAG00000011181) #21 ENSNGAG00000007865 #22 Gmds (ENSNGAG00000021851) #23 Mylk4 (ENSNGAG00000016589) #24 Wrnip1 (ENSNGAG00000022017) #26 ENSNGAG00000007869 #27 ENSNGAG00000020541 ENSNGAG00000018961 #14 Muroidea_A ANCESTRAL SPECIES 14 ENSGT00950000182818.A.f.b.a.b.b ENSGT00950000182818.A.f.b.a.b.a ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT00390000008538 #26 ENSGT01000000215059 #25 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154519.g.b.a #14 ENSGT00940000154519.g.b.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000175246 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 Cricetidae ANCESTRAL SPECIES 22 ENSGT00950000182818.A.f.b.a.b.b ENSGT00950000182818.A.f.b.a.b.a ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT00390000008538 #26 ENSGT01000000215059 #25 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154519.g.b.a.c.b #14 ENSGT00940000154519.g.b.a.d #14 ENSGT00940000154519.g.b.a.c.a #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000175246 ENSGT00940000154150 ENSGT00390000011804 Cricetinae ANCESTRAL SPECIES 20 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT00390000008538 #26 ENSGT01000000215059 #25 ENSGT00940000154573 #27 ENSGT00940000154931.d.j ENSGT00940000154519.g.b.a.c.b #14 ENSGT00940000154931.d.i ENSGT00940000154519.g.b.a.c.a #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 Golden Hamster MODERN SPECIES 623 Prl5a1 (ENSMAUG00000018024) Sox4 (ENSMAUG00000001434) Cdkal1 (ENSMAUG00000020796) E2f3 (ENSMAUG00000019714) ENSMAUG00000018470 Mboat1 (ENSMAUG00000017913) Agtr1a (ENSMAUG00000017279) Uqcrfs1 (ENSMAUG00000016767) Dusp22 (ENSMAUG00000016397) #16 Irf4 (ENSMAUG00000015575) #17 Exoc2 (ENSMAUG00000015195) #19 ENSMAUG00000014057 ENSMAUG00000013208 Foxq1 (ENSMAUG00000018519) #20 Foxf2 (ENSMAUG00000012470) #21 Foxc1 (ENSMAUG00000018460) #22 Gmds (ENSMAUG00000011976) #23 Mylk4 (ENSMAUG00000011053) #24 Wrnip1 (ENSMAUG00000009914) #26 ENSMAUG00000009659 #27 ENSMAUG00000009345 ENSMAUG00000009098 #14 ENSMAUG00000008075 ENSMAUG00000001439 ENSMAUG00000001093 #14 Nqo2 (ENSMAUG00000000875) Ripk1 (ENSMAUG00000000557) Bphl (ENSMAUG00000000408) Tubb2a (ENSMAUG00000018540) ENSMAUG00000018054 Psmg4 (ENSMAUG00000017755) Chinese hamster chok1gshd MODERN SPECIES 317 ENSCGRG00001000972 Prl4a1 (ENSCGRG00001018885) Prl5a1 (ENSCGRG00001023618) Sox4 (ENSCGRG00001004088) Cdkal1 (ENSCGRG00001010740) E2f3 (ENSCGRG00001024916) Mboat1 (ENSCGRG00001025065) Agtr1a (ENSCGRG00001009515) Uqcrfs1 (ENSCGRG00001008222) Dusp22 (ENSCGRG00001010384) #16 Irf4 (ENSCGRG00001016836) #17 Exoc2 (ENSCGRG00001019674) #19 ENSCGRG00001013162 Foxq1 (ENSCGRG00001006043) #20 Foxf2 (ENSCGRG00001022972) #21 Foxc1 (ENSCGRG00001005886) #22 Gmds (ENSCGRG00001014163) #23 ENSCGRG00001020761 Mylk4 (ENSCGRG00001012998) #24 Wrnip1 (ENSCGRG00001020075) #26 ENSCGRG00001007544 #25 ENSCGRG00001000139 #27 ENSCGRG00001009851 ENSCGRG00001014514 ENSCGRG00001021359 ENSCGRG00001022043 ENSCGRG00001020665 #14 ENSCGRG00001015437 #14 Nqo2 (ENSCGRG00001004425) Ripk1 (ENSCGRG00001014419) Bphl (ENSCGRG00001014124) Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00950000182818.A.f.b.a.b.a ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT00390000008538 #26 ENSGT01000000215059 #25 ENSGT00940000154573 #27 ENSGT00940000154931.d ENSGT00940000154519.g.b.a.d #14 ENSGT00940000154519.g.b.a.c.a #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000175246 ENSGT00940000154150 ENSGT00390000011804 ENSGT00940000157354 Prairie vole MODERN SPECIES 3 Sox4 (ENSMOCG00000004505) ENSMOCG00000002429 Cdkal1 (ENSMOCG00000022160) E2f3 (ENSMOCG00000022923) Mboat1 (ENSMOCG00000004726) ENSMOCG00000019499 Uqcrfs1 (ENSMOCG00000014738) ENSMOCG00000007870 #16 Irf4 (ENSMOCG00000017633) #17 Exoc2 (ENSMOCG00000022998) #19 Hus1b (ENSMOCG00000002316) #18 ENSMOCG00000000826 Foxq1 (ENSMOCG00000005340) #20 Foxf2 (ENSMOCG00000010276) #21 ENSMOCG00000002929 Foxc1 (ENSMOCG00000006436) #22 Gmds (ENSMOCG00000018203) #23 Mylk4 (ENSMOCG00000014428) #24 ENSMOCG00000019965 Wrnip1 (ENSMOCG00000002819) #26 ENSMOCG00000021377 #27 ENSMOCG00000000987 ENSMOCG00000016281 #14 ENSMOCG00000010614 ENSMOCG00000004352 ENSMOCG00000011182 #14 ENSMOCG00000019022 ENSMOCG00000016676 #14 ENSMOCG00000000484 #14 Nqo2 (ENSMOCG00000007454) Ripk1 (ENSMOCG00000002677) Northern American deer mouse MODERN SPECIES 18 Prl5a1 (ENSPEMG00000022650) ENSPEMG00000026740 Sox4 (ENSPEMG00000013688) Cdkal1 (ENSPEMG00000009808) E2f3 (ENSPEMG00000011070) Mboat1 (ENSPEMG00000028788) Agtr1a (ENSPEMG00000029887) Uqcrfs1 (ENSPEMG00000012221) Dusp22 (ENSPEMG00000012769) #16 Irf4 (ENSPEMG00000012922) #17 Exoc2 (ENSPEMG00000014307) #19 Hus1b (ENSPEMG00000013275) #18 ENSPEMG00000023016 Foxq1 (ENSPEMG00000029927) #20 Foxf2 (ENSPEMG00000017102) #21 Foxc1 (ENSPEMG00000025795) #22 Gmds (ENSPEMG00000018701) #23 ENSPEMG00000000084 #24 Wrnip1 (ENSPEMG00000000543) #26 ENSPEMG00000030799 #25 ENSPEMG00000003771 #27 ENSPEMG00000024282 ENSPEMG00000007226 #14 ENSPEMG00000007216 ENSPEMG00000025946 ENSPEMG00000029739 #14 ENSPEMG00000011189 ENSPEMG00000006842 #14 ENSPEMG00000030940 #14 Nqo2 (ENSPEMG00000022103) Ripk1 (ENSPEMG00000014892) Murinae ANCESTRAL SPECIES 21 ENSGT00950000182818.A.f.b.a.b.b ENSGT00950000182818.A.f.b.a.b.a ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT00390000008538 #26 ENSGT01000000215059 #25 ENSGT00940000154573.k.a #27 ENSGT00940000154573.l #27 ENSGT00940000154519.g.b.a.b #14 ENSGT00940000154931.d.o.a.a ENSGT00940000154931.d.o.a.b ENSGT00940000154573.k.b #27 ENSGT00940000154519.g.b.b #14 ENSGT00940000156563 ENSGT00940000159347 ENSGT00390000004746 ENSGT00940000154150 Mus ANCESTRAL SPECIES 18 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT00390000008538 #26 ENSGT01000000215059 #25 ENSGT00940000154573.k.a #27 ENSGT00940000154573.k.b #27 ENSGT00940000154931.d.o.a.b ENSGT00940000154519.g.b.a.b #14 ENSGT00940000154931.d.o.a.a ENSGT00940000154931.d.p ENSGT00940000154931.d.o.b ENSGT00940000154519.g.b.a.a.a.b.a #14 ENSGT00940000154519.g.b.a.a.b.a #14 ENSGT00940000154519.g.b.a.a.a.a #14 ENSGT00940000154519.g.b.b #14 Mus_A ANCESTRAL SPECIES 14 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT00390000008538 #26 ENSGT01000000215059 #25 ENSGT00940000154573.k.a #27 ENSGT00940000154573.k.b #27 ENSGT00940000154931.d.o.a.b ENSGT00940000154573.l #27 ENSGT00940000154519.g.b.a.b #14 ENSGT00940000154931.d.o.a.a ENSGT00940000154519.g.a ##14 ENSGT00940000154519.g.b.a.a.a.a #14 ENSGT00940000154519.g.b.b #14 ENSGT00940000156563 ENSGT00940000159347 Mus_B ANCESTRAL SPECIES 13 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT00390000008538 #26 ENSGT01000000215059 #25 ENSGT00940000154573.k.a #27 ENSGT00940000154573.l #27 ENSGT00940000154519.g.b.a.b #14 ENSGT00940000154931.d.o.a.a ENSGT00940000154931.d.o.a.b ENSGT00940000154573.k.b #27 ENSGT00940000154931.d.p ENSGT00940000154931.d.o.b.b ENSGT00940000154931.d.o.b.a.a ENSGT00940000154519.g.b.a.a.a.b.a #14 ENSGT00940000154519.g.b.a.a.b.a #14 Mus_C ANCESTRAL SPECIES 10 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #16 ENSGT00940000159059 #17 ENSGT00390000010872 #19 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #24 ENSGT00390000008538 #26 ENSGT01000000215059 #25 ENSGT00940000154573.k.a #27 ENSGT00940000154573.l #27 ENSGT00940000154519.g.b.a.b #14 ENSGT00940000154931.d.o.a.a ENSGT00940000154931.d.o.a.b ENSGT00940000154573.k.b #27 ENSGT00940000154931.d.p ENSGT00940000154931.d.o.b.b ENSGT00940000154931.d.o.b.a.b ENSGT00940000154931.d.o.b.a.a ENSGT00940000154519.g.b.a.a.a.b.a #14 Steppe mouse MODERN SPECIES 2907 Foxq1 (ENSMSIG00000012808) #20 Foxf2 (ENSMSIG00000012814) #21 Foxc1 (ENSMSIG00000012835) #22 Gmds (ENSMSIG00000012840) #23 ENSMSIG00000012867 #24 Wrnip1 (ENSMSIG00000012927) #26 ENSMSIG00000012960 #25 Serpinb1a (ENSMSIG00000012962) #27 Serpinb1c (ENSMSIG00000012970) #27 Serpinb6b (ENSMSIG00000012982) #14 Serpinb9 (ENSMSIG00000013005) Serpinb9b (ENSMSIG00000013028) Serpinb1b (ENSMSIG00000013045) #27 Serpinb9c (ENSMSIG00000013069) Serpinb9d (ENSMSIG00000013119) spretus MODERN SPECIES 4 Prl5a1 (MGP_SPRETEiJ_G0019254) Sox4 (MGP_SPRETEiJ_G0019255) Cdkal1 (MGP_SPRETEiJ_G0019256) E2f3 (MGP_SPRETEiJ_G0019257) Mboat1 (MGP_SPRETEiJ_G0019258) Agtr1a (MGP_SPRETEiJ_G0019259) Uqcrfs1 (MGP_SPRETEiJ_G0019260) Dusp22 (MGP_SPRETEiJ_G0019261) #16 Irf4 (MGP_SPRETEiJ_G0019262) #17 Exoc2 (MGP_SPRETEiJ_G0019263) #19 Hus1b (MGP_SPRETEiJ_G0019264) #18 MGP_SPRETEiJ_G0019265 MGP_SPRETEiJ_G0019266 Foxq1 (MGP_SPRETEiJ_G0019267) #20 Foxf2 (MGP_SPRETEiJ_G0019268) #21 Foxc1 (MGP_SPRETEiJ_G0019269) #22 Gmds (MGP_SPRETEiJ_G0019270) #23 MGP_SPRETEiJ_G0019271 #24 Wrnip1 (MGP_SPRETEiJ_G0019272) #26 MGP_SPRETEiJ_G0019273 #25 MGP_SPRETEiJ_G0019274 #27 MGP_SPRETEiJ_G0019275 #27 Serpinb6b (MGP_SPRETEiJ_G0019276) #14 Serpinb9 (MGP_SPRETEiJ_G0019277) MGP_SPRETEiJ_G0019278 Serpinb9c (MGP_SPRETEiJ_G0019279) MGP_SPRETEiJ_G0019280 MGP_SPRETEiJ_G0019281 MGP_SPRETEiJ_G0019282 MGP_SPRETEiJ_G0019283 MGP_SPRETEiJ_G0019284 Mouse MODERN SPECIES 4 Prl2c1 (ENSMUSG00000062551) Prl4a1 (ENSMUSG00000005891) Prl5a1 (ENSMUSG00000017064) Sox4 (ENSMUSG00000076431) Cdkal1 (ENSMUSG00000006191) E2f3 (ENSMUSG00000016477) Mboat1 (ENSMUSG00000038732) Agtr1a (ENSMUSG00000049115) Uqcrfs1 (ENSMUSG00000038462) Dusp22 (ENSMUSG00000069255) #16 Irf4 (ENSMUSG00000021356) #17 Exoc2 (ENSMUSG00000021357) #19 Hus1b (ENSMUSG00000076430) #18 Foxq1 (ENSMUSG00000038415) #20 Foxf2 (ENSMUSG00000038402) #21 Foxc1 (ENSMUSG00000050295) #22 Gmds (ENSMUSG00000038372) #23 Mylk4 (ENSMUSG00000044951) #24 Wrnip1 (ENSMUSG00000021400) #26 Serpinb1a (ENSMUSG00000044734) #27 Serpinb1c (ENSMUSG00000079049) #27 Serpinb6b (ENSMUSG00000042842) #14 Serpinb9 (ENSMUSG00000045827) Serpinb9b (ENSMUSG00000021403) Serpinb1b (ENSMUSG00000051029) #27 Serpinb9c (ENSMUSG00000021404) Serpinb9d (ENSMUSG00000054266) Serpinb9e (ENSMUSG00000062342) Serpinb9f (ENSMUSG00000038327) Serpinb9h (ENSMUSG00000071452) Serpinb9g (ENSMUSG00000057726) Ryukyu mouse MODERN SPECIES 4 Prl5a1 (MGP_CAROLIEiJ_G0018385) Sox4 (MGP_CAROLIEiJ_G0018386) Cdkal1 (MGP_CAROLIEiJ_G0018387) E2f3 (MGP_CAROLIEiJ_G0018388) Mboat1 (MGP_CAROLIEiJ_G0018389) Agtr1a (MGP_CAROLIEiJ_G0018390) Uqcrfs1 (MGP_CAROLIEiJ_G0018391) Dusp22 (MGP_CAROLIEiJ_G0018392) #16 Irf4 (MGP_CAROLIEiJ_G0018393) #17 Exoc2 (MGP_CAROLIEiJ_G0018394) #19 Hus1b (MGP_CAROLIEiJ_G0018395) #18 MGP_CAROLIEiJ_G0018396 MGP_CAROLIEiJ_G0018397 Foxq1 (MGP_CAROLIEiJ_G0018398) #20 Foxf2 (MGP_CAROLIEiJ_G0018399) #21 Foxc1 (MGP_CAROLIEiJ_G0018400) #22 Gmds (MGP_CAROLIEiJ_G0018401) #23 MGP_CAROLIEiJ_G0018402 #24 Wrnip1 (MGP_CAROLIEiJ_G0018403) #26 MGP_CAROLIEiJ_G0018404 #25 Serpinb1a (MGP_CAROLIEiJ_G0018405) #27 MGP_CAROLIEiJ_G0018406 #27 Serpinb6b (MGP_CAROLIEiJ_G0018407) #14 Serpinb9 (MGP_CAROLIEiJ_G0018408) MGP_CAROLIEiJ_G0018409 MGP_CAROLIEiJ_G0018410 MGP_CAROLIEiJ_G0018411 MGP_CAROLIEiJ_G0018412 ##14 Serpinb6c (MGP_CAROLIEiJ_G0018413) #14 Serpinb6a (MGP_CAROLIEiJ_G0018414) #14 Nqo2 (MGP_CAROLIEiJ_G0018415) Shrew mouse MODERN SPECIES 7 Prl4a1 (MGP_PahariEiJ_G0019449) Prl5a1 (MGP_PahariEiJ_G0019450) Sox4 (MGP_PahariEiJ_G0019451) Cdkal1 (MGP_PahariEiJ_G0019452) E2f3 (MGP_PahariEiJ_G0019453) Mboat1 (MGP_PahariEiJ_G0019454) Agtr1a (MGP_PahariEiJ_G0019455) Uqcrfs1 (MGP_PahariEiJ_G0019456) Dusp22 (MGP_PahariEiJ_G0019457) #16 Irf4 (MGP_PahariEiJ_G0019458) #17 Exoc2 (MGP_PahariEiJ_G0019459) #19 Hus1b (MGP_PahariEiJ_G0019460) #18 MGP_PahariEiJ_G0019461 Foxq1 (MGP_PahariEiJ_G0019462) #20 Foxf2 (MGP_PahariEiJ_G0019463) #21 Foxc1 (MGP_PahariEiJ_G0019464) #22 Gmds (MGP_PahariEiJ_G0019465) #23 MGP_PahariEiJ_G0019466 #24 Wrnip1 (MGP_PahariEiJ_G0019467) #26 MGP_PahariEiJ_G0019468 #25 Serpinb1a (MGP_PahariEiJ_G0019469) #27 MGP_PahariEiJ_G0019470 #27 Serpinb6b (MGP_PahariEiJ_G0019471) #14 Serpinb9 (MGP_PahariEiJ_G0019472) Serpinb9c (MGP_PahariEiJ_G0019473) MGP_PahariEiJ_G0019474 MGP_PahariEiJ_G0019475 MGP_PahariEiJ_G0019476 MGP_PahariEiJ_G0019477 Serpinb6d (MGP_PahariEiJ_G0019478) #14 Serpinb6e (MGP_PahariEiJ_G0019479) #14 Rat MODERN SPECIES 8 Sox4 (ENSRNOG00000065643) ENSRNOG00000065771 Cdkal1 (ENSRNOG00000018381) RGD1561310 (ENSRNOG00000062739) ENSRNOG00000062512 E2f3 (ENSRNOG00000029273) Mboat1 (ENSRNOG00000027125) Agtr1a (ENSRNOG00000018346) ENSRNOG00000070855 Uqcrfs1 (ENSRNOG00000018281) Dusp22 (ENSRNOG00000056376) #16 Irf4 (ENSRNOG00000061070) #17 Exoc2 (ENSRNOG00000060266) #19 Foxq1 (ENSRNOG00000062314) #20 Foxf2 (ENSRNOG00000063796) #21 Foxc1 (ENSRNOG00000070919) #22 Gmds (ENSRNOG00000017605) #23 Mylk4 (ENSRNOG00000070083) #24 ENSRNOG00000063699 #25 Wrnip1 (ENSRNOG00000017040) #26 Serpinb1a (ENSRNOG00000016581) #27 Serpinb6b (ENSRNOG00000016420) #14 Serpinb9 (ENSRNOG00000033772) RGD1562844 (ENSRNOG00000048576) Serpinb1b (ENSRNOG00000034229) #27 Serpinb9d (ENSRNOG00000022139) Serpinb6e (ENSRNOG00000070025) #14 RGD1564786 (ENSRNOG00000063990) #14 Nqo2 (ENSRNOG00000017820) Serpinb6a (ENSRNOG00000017962) #14 Ripk1 (ENSRNOG00000017787) Lagomorpha ANCESTRAL SPECIES ENSGT00940000162303.b #22 Pika MODERN SPECIES 10366 ENSOPRG00000014675 #22