Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000154994.b	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.a.b ##25	ENSGT00390000015789.c.b #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36
Glires	ANCESTRAL SPECIES	3	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000154994.b	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.a.b ##25	ENSGT00390000015789.c.b.t #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00950000183311	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35
Rodentia	ANCESTRAL SPECIES	4	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000154994.b	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.a.b ##25	ENSGT00390000015789.c.b.t #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Muroidea	ANCESTRAL SPECIES		ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.a ##25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Chinese hamster chok1gshd	MODERN SPECIES	33	Rab5c (ENSCGRG00001014226) #7	Hspb9 (ENSCGRG00001012537) #8	Kat2a (ENSCGRG00001018026) #9	Dhx58 (ENSCGRG00001010336) #10	Zfp385c (ENSCGRG00001021185) #11	Nkiras2 (ENSCGRG00001021109) #12	Dnajc7 (ENSCGRG00001022002) #13	Cnp (ENSCGRG00001019037) #14	Odad4 (ENSCGRG00001022193) #15	ENSCGRG00001020299 #16	Klhl11 (ENSCGRG00001000275) #17	Klhl10 (ENSCGRG00001017363) #18	Nt5c3b (ENSCGRG00001023229) #19	Fkbp10 (ENSCGRG00001015001) #20	P3h4 (ENSCGRG00001005342) #21	Jup (ENSCGRG00001005618) #22	Hap1 (ENSCGRG00001016906) #23	Gast (ENSCGRG00001018132) #24	ENSCGRG00001015513 #25	Krt42 (ENSCGRG00001005409) #26	Krt17 (ENSCGRG00001020336) #27	Krt16 (ENSCGRG00001015254) #28	Krt14 (ENSCGRG00001015161) #29	Krt9 (ENSCGRG00001021018) #30	Krt19 (ENSCGRG00001015028) #31	Krt15 (ENSCGRG00001012486) #32	Krt13 (ENSCGRG00001006585) #33	Krt36 (ENSCGRG00001022979) #34	Krt35 (ENSCGRG00001022383) #35	Krt32 (ENSCGRG00001019573) #36	Krt31 (ENSCGRG00001020331) #37
Golden Hamster	MODERN SPECIES	882	Kcnh4 (ENSMAUG00000021037)	Rab5c (ENSMAUG00000015005) #7	Kat2a (ENSMAUG00000019208) #9	Dhx58 (ENSMAUG00000019934) #10	Zfp385c (ENSMAUG00000020342) #11	Nkiras2 (ENSMAUG00000015264) #12	Dnajc7 (ENSMAUG00000021058) #13	Cnp (ENSMAUG00000013752) #14	Odad4 (ENSMAUG00000006166) #15	Acly (ENSMAUG00000000465) #16	Klhl11 (ENSMAUG00000017249) #17	Klhl10 (ENSMAUG00000021131) #18	Nt5c3b (ENSMAUG00000015023) #19	Fkbp10 (ENSMAUG00000014011) #20	P3h4 (ENSMAUG00000017873) #21	Jup (ENSMAUG00000015872) #22	Hap1 (ENSMAUG00000015239) #23	Gast (ENSMAUG00000016246) #24	ENSMAUG00000008970 #26	Krt17 (ENSMAUG00000015460) #27	Krt16 (ENSMAUG00000013514) #28	Krt14 (ENSMAUG00000014542) #29	Krt9 (ENSMAUG00000009863) #30	Krt19 (ENSMAUG00000001379) #31	Krt15 (ENSMAUG00000012596) #32	Krt13 (ENSMAUG00000016027) #33	Krt36 (ENSMAUG00000014666) #34	Krt35 (ENSMAUG00000013766) #35	Krt32 (ENSMAUG00000011384) #36	Krt34 (ENSMAUG00000012068)	ENSMAUG00000010414 ##37
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Northern American deer mouse	MODERN SPECIES	21	Rab5c (ENSPEMG00000017971) #7	Hspb9 (ENSPEMG00000017059) #8	Kat2a (ENSPEMG00000017221) #9	Dhx58 (ENSPEMG00000018681) #10	Zfp385c (ENSPEMG00000018609) #11	Nkiras2 (ENSPEMG00000030424) #12	Dnajc7 (ENSPEMG00000009887) #13	Cnp (ENSPEMG00000011807) #14	Odad4 (ENSPEMG00000004971) #15	Acly (ENSPEMG00000006656) #16	Klhl11 (ENSPEMG00000026157) #17	Klhl10 (ENSPEMG00000016939) #18	Nt5c3b (ENSPEMG00000016608) #19	Fkbp10 (ENSPEMG00000015119) #20	P3h4 (ENSPEMG00000003895) #21	Jup (ENSPEMG00000011596) #22	Hap1 (ENSPEMG00000012716) #23	Gast (ENSPEMG00000011428) #24	ENSPEMG00000015694 #25	Krt42 (ENSPEMG00000012473) #26	Krt17 (ENSPEMG00000018467) #27	Krt16 (ENSPEMG00000010768) #28	Krt14 (ENSPEMG00000018789) #29	Krt9 (ENSPEMG00000008176) #30	Krt19 (ENSPEMG00000006832) #31	Krt15 (ENSPEMG00000017616) #32	Krt13 (ENSPEMG00000018368) #33	Krt36 (ENSPEMG00000013117) #34	Krt35 (ENSPEMG00000002875) #35	Krt32 (ENSPEMG00000018356) #36	Krt31 (ENSPEMG00000006083) #37
Prairie vole	MODERN SPECIES	114													Nt5c3b (ENSMOCG00000012904) #19	Fkbp10 (ENSMOCG00000020969) #20	P3h4 (ENSMOCG00000020222) #21	Jup (ENSMOCG00000013988) #22	Hap1 (ENSMOCG00000018599) #23	Gast (ENSMOCG00000015714) #24	Eif1 (ENSMOCG00000013986) ##25	Krt42 (ENSMOCG00000020707) #26	Krt17 (ENSMOCG00000007079) #27	Krt16 (ENSMOCG00000002310) #28	Krt14 (ENSMOCG00000012751) #29	Krt9 (ENSMOCG00000007293) #30	Krt19 (ENSMOCG00000015107) #31	Krt15 (ENSMOCG00000014586) #32	Krt13 (ENSMOCG00000010928) #33	ENSMOCG00000006876	Krt36 (ENSMOCG00000018894) #34	Krt35 (ENSMOCG00000011239) #35	Krt32 (ENSMOCG00000000760) #36
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Mus	ANCESTRAL SPECIES	2	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Mouse	MODERN SPECIES	2	Rab5c (ENSMUSG00000019173) #7	Hspb9 (ENSMUSG00000017832) #8	Kat2a (ENSMUSG00000020918) #9	Dhx58 (ENSMUSG00000017830) #10	Zfp385c (ENSMUSG00000014198) #11	Nkiras2 (ENSMUSG00000017837) #12	Dnajc7 (ENSMUSG00000014195) #13	Cnp (ENSMUSG00000006782) #14	Odad4 (ENSMUSG00000006784) #15	Acly (ENSMUSG00000020917) #16	Klhl11 (ENSMUSG00000048732) #17	Klhl10 (ENSMUSG00000001558) #18	Nt5c3b (ENSMUSG00000017176) #19	Fkbp10 (ENSMUSG00000001555) #20	P3h4 (ENSMUSG00000006931) #21	Jup (ENSMUSG00000001552) #22	Hap1 (ENSMUSG00000006930) #23	Gast (ENSMUSG00000017165) #24	Eif1 (ENSMUSG00000035530) ##25	Krt42 (ENSMUSG00000053654) #26	Krt17 (ENSMUSG00000035557) #27	Krt16 (ENSMUSG00000053797) #28	Krt14 (ENSMUSG00000045545) #29	Krt9 (ENSMUSG00000051617) #30	Krt19 (ENSMUSG00000020911) #31	Krt15 (ENSMUSG00000054146) #32	Krt13 (ENSMUSG00000044041) #33	Krt36 (ENSMUSG00000020916) #34	Krt35 (ENSMUSG00000048013) #35	Krt32 (ENSMUSG00000046095) #36	Krt31 (ENSMUSG00000048981) #37
Mus_C	ANCESTRAL SPECIES	21	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.b.t.c.b.a #25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b.c #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.a.b #37
Steppe mouse	MODERN SPECIES	2508						ENSMSIG00000000293 #13	ENSMSIG00000000383	Cnp (ENSMSIG00000000414) #14	Odad4 (ENSMSIG00000000453) #15	Acly (ENSMSIG00000000565) #16	Klhl11 (ENSMSIG00000000730) #17	Klhl10 (ENSMSIG00000000753) #18	Nt5c3b (ENSMSIG00000000807) #19	Fkbp10 (ENSMSIG00000000865) #20	P3h4 (ENSMSIG00000000942) #21	Jup (ENSMSIG00000001000) #22	Hap1 (ENSMSIG00000001037) #23	Gast (ENSMSIG00000001061) #24	ENSMSIG00000001075 #25	Krt42 (ENSMSIG00000001103) #26	Krt17 (ENSMSIG00000001129) #27	ENSMSIG00000001147 #28	ENSMSIG00000001184 #28	Krt14 (ENSMSIG00000001257) #29	ENSMSIG00000001354 #30	Krt15 (ENSMSIG00000001420) #32	Krt13 (ENSMSIG00000001442) #33	Krt36 (ENSMSIG00000001468) #34	Krt35 (ENSMSIG00000001493) #35	Krt32 (ENSMSIG00000001532) #36
spretus	MODERN SPECIES	2	Rab5c (MGP_SPRETEiJ_G0018027) #7	Hspb9 (MGP_SPRETEiJ_G0018026) #8	Kat2a (MGP_SPRETEiJ_G0018025) #9	Dhx58 (MGP_SPRETEiJ_G0018024) #10	Zfp385c (MGP_SPRETEiJ_G0018023) #11	Nkiras2 (MGP_SPRETEiJ_G0018022) #12	Dnajc7 (MGP_SPRETEiJ_G0018021) #13	Cnp (MGP_SPRETEiJ_G0018020) #14	Odad4 (MGP_SPRETEiJ_G0018019) #15	Acly (MGP_SPRETEiJ_G0018018) #16	Klhl11 (MGP_SPRETEiJ_G0018017) #17	Klhl10 (MGP_SPRETEiJ_G0018016) #18	Nt5c3b (MGP_SPRETEiJ_G0018015) #19	Fkbp10 (MGP_SPRETEiJ_G0018014) #20	P3h4 (MGP_SPRETEiJ_G0018013) #21	Jup (MGP_SPRETEiJ_G0018012) #22	Hap1 (MGP_SPRETEiJ_G0018011) #23	Gast (MGP_SPRETEiJ_G0018010) #24	MGP_SPRETEiJ_G0018009 ##25	Krt42 (MGP_SPRETEiJ_G0018008) #26	Krt17 (MGP_SPRETEiJ_G0018007) #27	MGP_SPRETEiJ_G0018006 #28	Krt14 (MGP_SPRETEiJ_G0018005) #29	Krt9 (MGP_SPRETEiJ_G0018004) #30	Krt19 (MGP_SPRETEiJ_G0018003) #31	Krt15 (MGP_SPRETEiJ_G0018002) #32	Krt13 (MGP_SPRETEiJ_G0018001) #33	Krt36 (MGP_SPRETEiJ_G0018000) #34	Krt35 (MGP_SPRETEiJ_G0017999) #35	Krt32 (MGP_SPRETEiJ_G0017998) #36	Krt31 (MGP_SPRETEiJ_G0017997) #37
Ryukyu mouse	MODERN SPECIES	2	Rab5c (MGP_CAROLIEiJ_G0017184) #7	Hspb9 (MGP_CAROLIEiJ_G0017183) #8	Kat2a (MGP_CAROLIEiJ_G0017182) #9	Dhx58 (MGP_CAROLIEiJ_G0017181) #10	Zfp385c (MGP_CAROLIEiJ_G0017180) #11	Nkiras2 (MGP_CAROLIEiJ_G0017179) #12	Dnajc7 (MGP_CAROLIEiJ_G0017178) #13	Cnp (MGP_CAROLIEiJ_G0017177) #14	Odad4 (MGP_CAROLIEiJ_G0017176) #15	Acly (MGP_CAROLIEiJ_G0017175) #16	Klhl11 (MGP_CAROLIEiJ_G0017174) #17	Klhl10 (MGP_CAROLIEiJ_G0017173) #18	Nt5c3b (MGP_CAROLIEiJ_G0017172) #19	Fkbp10 (MGP_CAROLIEiJ_G0017171) #20	P3h4 (MGP_CAROLIEiJ_G0017170) #21	Jup (MGP_CAROLIEiJ_G0017169) #22	Hap1 (MGP_CAROLIEiJ_G0017168) #23	Gast (MGP_CAROLIEiJ_G0017167) #24	Krt42 (MGP_CAROLIEiJ_G0017166) #26	Krt17 (MGP_CAROLIEiJ_G0017165) #27	MGP_CAROLIEiJ_G0017164 #28	Krt14 (MGP_CAROLIEiJ_G0017163) #29	Krt9 (MGP_CAROLIEiJ_G0017162) #30	Krt19 (MGP_CAROLIEiJ_G0017161) #31	Krt15 (MGP_CAROLIEiJ_G0017160) #32	Krt13 (MGP_CAROLIEiJ_G0017159) #33	Krt36 (MGP_CAROLIEiJ_G0017158) #34	Krt35 (MGP_CAROLIEiJ_G0017157) #35	Krt32 (MGP_CAROLIEiJ_G0017156) #36	Krt31 (MGP_CAROLIEiJ_G0017155) #37	Krt34 (MGP_CAROLIEiJ_G0017154)
Shrew mouse	MODERN SPECIES	5	Rab5c (MGP_PahariEiJ_G0018314) #7	Hspb9 (MGP_PahariEiJ_G0018313) #8	Kat2a (MGP_PahariEiJ_G0018312) #9	Dhx58 (MGP_PahariEiJ_G0018311) #10	Zfp385c (MGP_PahariEiJ_G0018310) #11	Nkiras2 (MGP_PahariEiJ_G0018309) #12	Dnajc7 (MGP_PahariEiJ_G0018308) #13	Cnp (MGP_PahariEiJ_G0018307) #14	MGP_PahariEiJ_G0018306 #15	Acly (MGP_PahariEiJ_G0018305) #16	Klhl11 (MGP_PahariEiJ_G0018304) #17	Klhl10 (MGP_PahariEiJ_G0018303) #18	Nt5c3b (MGP_PahariEiJ_G0018302) #19	Fkbp10 (MGP_PahariEiJ_G0018301) #20	P3h4 (MGP_PahariEiJ_G0018300) #21	Jup (MGP_PahariEiJ_G0018299) #22	Hap1 (MGP_PahariEiJ_G0018298) #23	Gast (MGP_PahariEiJ_G0018297) #24	MGP_PahariEiJ_G0018296 ##25	Krt42 (MGP_PahariEiJ_G0018295) #26	Krt17 (MGP_PahariEiJ_G0018294) #27	MGP_PahariEiJ_G0018293 #28	Krt14 (MGP_PahariEiJ_G0018292) #29	MGP_PahariEiJ_G0018291 #30	Krt19 (MGP_PahariEiJ_G0018290) #31	Krt15 (MGP_PahariEiJ_G0018289) #32	Krt13 (MGP_PahariEiJ_G0018288) #33	Krt36 (MGP_PahariEiJ_G0018287) #34	Krt35 (MGP_PahariEiJ_G0018286) #35	Krt32 (MGP_PahariEiJ_G0018285) #36	Krt31 (MGP_PahariEiJ_G0018284) #37
Rat	MODERN SPECIES	1	Rab5c (ENSRNOG00000018568) #7	Hspb9 (ENSRNOG00000036819) #8	Kat2a (ENSRNOG00000018364) #9	Dhx58 (ENSRNOG00000018247) #10	Zfp385c (ENSRNOG00000025370) #11	Nkiras2 (ENSRNOG00000018095) #12	Dnajc7 (ENSRNOG00000017781) #13	Cnp (ENSRNOG00000017496) #14	Odad4 (ENSRNOG00000017473) #15	Acly (ENSRNOG00000016924) #16	Klhl11 (ENSRNOG00000016921) #17	Klhl10 (ENSRNOG00000016749) #18	Nt5c3b (ENSRNOG00000016475) #19	Fkbp10 (ENSRNOG00000015941) #20	P3h4 (ENSRNOG00000015787) #21	Jup (ENSRNOG00000015380) #22	Hap1 (ENSRNOG00000014819) #23	Gast (ENSRNOG00000014740) #24	Eif1 (ENSRNOG00000033765) ##25	Krt42 (ENSRNOG00000034087) #26	Krt17 (ENSRNOG00000026371) #27	Krt9 (ENSRNOG00000014370) #30	Krt16 (ENSRNOG00000003899) #28	Krt13 (ENSRNOG00000014070) #33	Krt36 (ENSRNOG00000031805) #34	Krt35 (ENSRNOG00000013754) #35	Krt32 (ENSRNOG00000013611) #36	Krt31 (ENSRNOG00000030344) #37	Krt34 (ENSRNOG00000051302)	Krt33b (ENSRNOG00000068212) ##37	Krt33a (ENSRNOG00000062912) ##37
Upper Galilee mountains blind mole rat	MODERN SPECIES	912	ENSNGAG00000010286 #7	Kat2a (ENSNGAG00000011766) #9	Dhx58 (ENSNGAG00000017107) #10	Zfp385c (ENSNGAG00000009495) #11	Nkiras2 (ENSNGAG00000018489) #12	Dnajc7 (ENSNGAG00000014379) #13	Cnp (ENSNGAG00000006656) #14	Odad4 (ENSNGAG00000020605) #15	ENSNGAG00000018695	Acly (ENSNGAG00000009022) #16	Klhl11 (ENSNGAG00000020048) #17	Klhl10 (ENSNGAG00000011124) #18	Nt5c3b (ENSNGAG00000000422) #19	Fkbp10 (ENSNGAG00000017675) #20	P3h4 (ENSNGAG00000000360) #21	Jup (ENSNGAG00000000170) #22	ENSNGAG00000019533	Hap1 (ENSNGAG00000007898) #23	Gast (ENSNGAG00000019585) #24	Eif1 (ENSNGAG00000018937) ##25	Krt42 (ENSNGAG00000019553) #26	Krt17 (ENSNGAG00000012777) #27	Krt16 (ENSNGAG00000000117) #28	Krt14 (ENSNGAG00000010672) #29	ENSNGAG00000018654 #30	Krt19 (ENSNGAG00000011315) #31	Krt15 (ENSNGAG00000001364) #32	Krt13 (ENSNGAG00000015515) #33	Krt36 (ENSNGAG00000020685) #34	Krt35 (ENSNGAG00000019802) #35	Krt32 (ENSNGAG00000013427) #36
Lesser Egyptian jerboa	MODERN SPECIES	56	Kcnh4 (ENSJJAG00000021495)	Rab5c (ENSJJAG00000021181) #7	Kat2a (ENSJJAG00000021399) #9	Dhx58 (ENSJJAG00000000855) #10	Zfp385c (ENSJJAG00000020892) #11	Nkiras2 (ENSJJAG00000009448) #12	Dnajc7 (ENSJJAG00000009724) #13	Cnp (ENSJJAG00000021905) #14	Odad4 (ENSJJAG00000021988) #15	Acly (ENSJJAG00000023463) #16	Klhl11 (ENSJJAG00000021286) #17	Klhl10 (ENSJJAG00000023238) #18	Nt5c3b (ENSJJAG00000022142) #19	Fkbp10 (ENSJJAG00000021205) #20	P3h4 (ENSJJAG00000022678) #21	Jup (ENSJJAG00000021441) #22	Hap1 (ENSJJAG00000022760) #23	Gast (ENSJJAG00000021370) #24	Eif1 (ENSJJAG00000021198) #25	Krt42 (ENSJJAG00000022125) #26	Krt17 (ENSJJAG00000009622) #27	Krt16 (ENSJJAG00000022085) #28	Krt14 (ENSJJAG00000023341) #29	ENSJJAG00000022627 #30	Krt19 (ENSJJAG00000023491) #31	Krt15 (ENSJJAG00000023216) #32	Krt13 (ENSJJAG00000002259) #33	Krt36 (ENSJJAG00000021463) #34	Krt35 (ENSJJAG00000022241) #35	Krt32 (ENSJJAG00000021346) #36	ENSJJAG00000021849 ##37
Kangaroo rat	MODERN SPECIES	326	Kcnh4 (ENSDORG00000002370)	Rab5c (ENSDORG00000006819) #7	Kat2a (ENSDORG00000006817) #9	Dhx58 (ENSDORG00000006815) #10	Zfp385c (ENSDORG00000001917) #11	Nkiras2 (ENSDORG00000024004) #12	Dnajc7 (ENSDORG00000001914) #13	Cnp (ENSDORG00000001913) #14	Odad4 (ENSDORG00000001910) #15	Acly (ENSDORG00000001906) #16	Klhl11 (ENSDORG00000001903) #17	Klhl10 (ENSDORG00000001899) #18	Nt5c3b (ENSDORG00000003263) #19	Fkbp10 (ENSDORG00000001100) #20	P3h4 (ENSDORG00000001103) #21	Jup (ENSDORG00000001104) #22	Hap1 (ENSDORG00000005913) #23	Gast (ENSDORG00000005917) #24	ENSDORG00000013853 #25	Krt42 (ENSDORG00000029252) #26	Krt17 (ENSDORG00000016115) #27	Krt16 (ENSDORG00000016113) #28	Krt14 (ENSDORG00000029977) #29	Krt9 (ENSDORG00000026645) #30	Krt19 (ENSDORG00000006970) #31	Krt15 (ENSDORG00000006968) #32	Krt13 (ENSDORG00000006965) #33	Krt36 (ENSDORG00000006963) #34	Krt35 (ENSDORG00000028712) #35	Krt32 (ENSDORG00000006959) #36	Krt31 (ENSDORG00000025918) #37
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000154994.b	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.a.b ##25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000163841
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00390000014792 #24	ENSGT00390000015789.c.a.b ##25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000163426	ENSGT00940000153980.j.a.a ##37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00390000014792 #24	ENSGT00390000015789.c.a.b ##25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.a ##37	ENSGT00940000163658
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00390000014792 #24	ENSGT00390000015789.c.a.b ##25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.a ##37	ENSGT00940000163658
Long-tailed chinchilla	MODERN SPECIES	158	KCNH4 (ENSCLAG00000016815)	RAB5C (ENSCLAG00000016650) #7	KAT2A (ENSCLAG00000015084) #9	DHX58 (ENSCLAG00000013960) #10	ZNF385C (ENSCLAG00000015100) #11	NKIRAS2 (ENSCLAG00000014896) #12	DNAJC7 (ENSCLAG00000015312) #13	CNP (ENSCLAG00000015883) #14	ODAD4 (ENSCLAG00000014476) #15	ACLY (ENSCLAG00000014600) #16	KLHL11 (ENSCLAG00000017003) #17	KLHL10 (ENSCLAG00000017306) #18	NT5C3B (ENSCLAG00000015634) #19	FKBP10 (ENSCLAG00000016960) #20	P3H4 (ENSCLAG00000015645) #21	JUP (ENSCLAG00000015947) #22	GAST (ENSCLAG00000016052) #24	ENSCLAG00000015732 #25	ENSCLAG00000015351 #26	KRT16 (ENSCLAG00000016344) #28	KRT9 (ENSCLAG00000016583) #30	KRT19 (ENSCLAG00000015425) #31	KRT15 (ENSCLAG00000013658) #32	ENSCLAG00000015341 #33	ENSCLAG00000016636 #26	ENSCLAG00000017990	KRTAP16-1 (ENSCLAG00000016554)	ENSCLAG00000015082	ENSCLAG00000017906	ENSCLAG00000015077	ENSCLAG00000015152
Degu	MODERN SPECIES	97	RAB5C (ENSODEG00000017920) #7	HSPB9 (ENSODEG00000018407) #8	KAT2A (ENSODEG00000018011) #9	DHX58 (ENSODEG00000017902) #10	ZNF385C (ENSODEG00000018049) #11	NKIRAS2 (ENSODEG00000017843) #12	DNAJC7 (ENSODEG00000017953) #13	CNP (ENSODEG00000017962) #14	ODAD4 (ENSODEG00000017939) #15	ACLY (ENSODEG00000018143) #16	KLHL11 (ENSODEG00000017875) #17	KLHL10 (ENSODEG00000018015) #18	NT5C3B (ENSODEG00000018081) #19	FKBP10 (ENSODEG00000017908) #20	P3H4 (ENSODEG00000017979) #21	JUP (ENSODEG00000017964) #22	GAST (ENSODEG00000017853) #24	EIF1 (ENSODEG00000018101) ##25	ENSODEG00000017881 #26	KRT17 (ENSODEG00000017862) #27	KRT16 (ENSODEG00000017857) #28	KRT14 (ENSODEG00000017873) #29	KRT9 (ENSODEG00000017935) #30	KRT19 (ENSODEG00000017884) #31	KRT15 (ENSODEG00000017969) #32	ENSODEG00000017822 #33	KRT36 (ENSODEG00000017942) #34	KRT35 (ENSODEG00000017892) #35	KRT32 (ENSODEG00000017895) #36	ENSODEG00000017837 ##37	ENSODEG00000017841 ##37
Guinea pig	MODERN SPECIES	53	RAB5C (ENSCPOG00000011190) #7	HSPB9 (ENSCPOG00000026480) #8	KAT2A (ENSCPOG00000040409) #9	DHX58 (ENSCPOG00000023721) #10	ZNF385C (ENSCPOG00000006417) #11	NKIRAS2 (ENSCPOG00000037805) #12	DNAJC7 (ENSCPOG00000023384) #13	CNP (ENSCPOG00000020940) #14	ODAD4 (ENSCPOG00000023846) #15	ACLY (ENSCPOG00000010813) #16	KLHL11 (ENSCPOG00000021621) #17	KLHL10 (ENSCPOG00000002818) #18	NT5C3B (ENSCPOG00000027400) #19	FKBP10 (ENSCPOG00000020998) #20	P3H4 (ENSCPOG00000026262) #21	JUP (ENSCPOG00000003295) #22	GAST (ENSCPOG00000009853) #24	ENSCPOG00000030441 ##25	KRT9 (ENSCPOG00000033124) #30	KRT19 (ENSCPOG00000035147) #31	KRT14 (ENSCPOG00000006839) #29	ENSCPOG00000034373 #33	KRT36 (ENSCPOG00000032028) #34	KRT35 (ENSCPOG00000030708) #35	ENSCPOG00000038800 ##37	ENSCPOG00000032896 ##37	ENSCPOG00000032218 ##37	ENSCPOG00000039793 ##37	ENSCPOG00000025665	KRTAP16-1 (ENSCPOG00000020936)	ENSCPOG00000032008
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000032125 #8	KAT2A (ENSHGLG00000014215) #9	DHX58 (ENSHGLG00000011529) #10	ZNF385C (ENSHGLG00000013481) #11	ENSHGLG00000034407	ENSHGLG00000039749 #12	DNAJC7 (ENSHGLG00000016992) #13	CNP (ENSHGLG00000016638) #14	ODAD4 (ENSHGLG00000016605) #15	ACLY (ENSHGLG00000014233) #16	KLHL11 (ENSHGLG00000037770) #17	KLHL10 (ENSHGLG00000018732) #18	NT5C3B (ENSHGLG00000015568) #19	FKBP10 (ENSHGLG00000016119) #20	P3H4 (ENSHGLG00000016255) #21	JUP (ENSHGLG00000019242) #22	GAST (ENSHGLG00000013252) #24	ENSHGLG00000014274 ##25	ENSHGLG00000014114 #26	KRT17 (ENSHGLG00000014256) #27	ENSHGLG00000018762 ##32	KRT14 (ENSHGLG00000014710) #29	ENSHGLG00000017248 #33	KRT35 (ENSHGLG00000014815) #35	KRT32 (ENSHGLG00000017222) #36	ENSHGLG00000041581 ##37	KRT34 (ENSHGLG00000048614)	ENSHGLG00000042231 ##37	ENSHGLG00000045464 ##37	KRTAP29-1 (ENSHGLG00000047368)	ENSHGLG00000016026
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000154994.b	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.a.b ##25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00950000183311	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36
Marmotini	ANCESTRAL SPECIES	8	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000154994.b	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.a.b ##25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.b.c.a ##37
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000154994.b	ENSGT00940000157202 #11	ENSGT00940000157943.b.i #12	ENSGT00940000155338 #13	ENSGT00510000048410 #14	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00390000012959.a #19	ENSGT00940000156331 #20	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.c.a.b ##25	ENSGT00940000163247 #26	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000162894 #30	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000153980.j.a.b.b.c.a ##37
Arctic ground squirrel	MODERN SPECIES	46	HSPB9 (ENSUPAG00010009527) #8	KAT2A (ENSUPAG00010009504) #9	DHX58 (ENSUPAG00010009486) #10	C17orf113 (ENSUPAG00010009476)	ZNF385C (ENSUPAG00010009440) #11	NKIRAS2 (ENSUPAG00010009426) #12	DNAJC7 (ENSUPAG00010009401) #13	CNP (ENSUPAG00010009395) #14	ODAD4 (ENSUPAG00010009389) #15	ACLY (ENSUPAG00010009305) #16	KLHL11 (ENSUPAG00010009300) #17	KLHL10 (ENSUPAG00010009288) #18	NT5C3B (ENSUPAG00010009269) #19	FKBP10 (ENSUPAG00010009227) #20	P3H4 (ENSUPAG00010009210) #21	JUP (ENSUPAG00010009167) #22	HAP1 (ENSUPAG00010009150) #23	GAST (ENSUPAG00010009145) #24	ENSUPAG00010009142 ##25	ENSUPAG00010009125 #26	KRT17 (ENSUPAG00010009109) #27	KRT16 (ENSUPAG00010009069) #28	KRT14 (ENSUPAG00010009018) #29	KRT9 (ENSUPAG00010009000) #30	KRT19 (ENSUPAG00010008984) #31	KRT15 (ENSUPAG00010008970) #32	ENSUPAG00010008946 #33	KRT36 (ENSUPAG00010008919) #34	KRT35 (ENSUPAG00010008898) #35	KRT32 (ENSUPAG00010008877) #36	ENSUPAG00010008855 ##37
Squirrel	MODERN SPECIES	90	HSPB9 (ENSSTOG00000006602) #8	RAB5C (ENSSTOG00000006620) #7	KAT2A (ENSSTOG00000006556) #9	DHX58 (ENSSTOG00000006524) #10	ZNF385C (ENSSTOG00000020287) #11	ENSSTOG00000006159 #12	DNAJC7 (ENSSTOG00000006122) #13	CNP (ENSSTOG00000006116) #14	ODAD4 (ENSSTOG00000006075) #15	ACLY (ENSSTOG00000006029) #16	KLHL11 (ENSSTOG00000026300) #17	KLHL10 (ENSSTOG00000005983) #18	NT5C3B (ENSSTOG00000005969) #19	FKBP10 (ENSSTOG00000005956) #20	P3H4 (ENSSTOG00000028974) #21	JUP (ENSSTOG00000005910) #22	HAP1 (ENSSTOG00000020475) #23	GAST (ENSSTOG00000005906) #24	EIF1 (ENSSTOG00000002719) ##25	ENSSTOG00000024700 #26	KRT16 (ENSSTOG00000014410) #28	KRT19 (ENSSTOG00000014403) #31	KRT15 (ENSSTOG00000014415) #32	ENSSTOG00000014393 #33	KRT36 (ENSSTOG00000014383) #34	KRT35 (ENSSTOG00000034016) #35	KRT32 (ENSSTOG00000014374) #36	ENSSTOG00000034013 ##37	ENSSTOG00000013178 ##37	ENSSTOG00000033523 ##37	ENSSTOG00000013195 ##37
Alpin marmot	MODERN SPECIES	42	KCNH4 (ENSMMMG00000006041)	RAB5C (ENSMMMG00000006088) #7	KAT2A (ENSMMMG00000006120) #9	DHX58 (ENSMMMG00000006156) #10	ZNF385C (ENSMMMG00000006176) #11	ENSMMMG00000006193 #12	DNAJC7 (ENSMMMG00000006215) #13	CNP (ENSMMMG00000006240) #14	ENSMMMG00000006244 #15	ENSMMMG00000006252 #15	ACLY (ENSMMMG00000006262) #16	KLHL11 (ENSMMMG00000006432) #17	KLHL10 (ENSMMMG00000006440) #18	NT5C3B (ENSMMMG00000006451) #19	FKBP10 (ENSMMMG00000006462) #20	JUP (ENSMMMG00000006521) #22	HAP1 (ENSMMMG00000006582) #23	GAST (ENSMMMG00000006600) #24	ENSMMMG00000006606 ##25	ENSMMMG00000006617 #26	KRT17 (ENSMMMG00000006626) #27	KRT16 (ENSMMMG00000006635) #28	KRT14 (ENSMMMG00000006660) #29	KRT9 (ENSMMMG00000006665) #30	KRT19 (ENSMMMG00000006685) #31	KRT15 (ENSMMMG00000006700) #32	ENSMMMG00000006714 #33	KRT36 (ENSMMMG00000006729) #34	KRT35 (ENSMMMG00000006741) #35	KRT32 (ENSMMMG00000006755) #36	ENSMMMG00000006764 ##37
Eurasian red squirrel	MODERN SPECIES	12	HSPB9 (ENSSVLG00005000293) #8	KAT2A (ENSSVLG00005000319) #9	DHX58 (ENSSVLG00005000354) #10	ZNF385C (ENSSVLG00005000419) #11	C17orf113 (ENSSVLG00005000459)	ENSSVLG00005000476 #12	ENSSVLG00005000498 #13	CNP (ENSSVLG00005000524) #14	ODAD4 (ENSSVLG00005000556) #15	ACLY (ENSSVLG00005000630) #16	KLHL11 (ENSSVLG00005000699) #17	KLHL10 (ENSSVLG00005000723) #18	NT5C3B (ENSSVLG00005000754) #19	FKBP10 (ENSSVLG00005000785) #20	P3H4 (ENSSVLG00005000841) #21	JUP (ENSSVLG00005000914) #22	ENSSVLG00005001006 #21	ENSSVLG00005001022	HAP1 (ENSSVLG00005001065) #23	ENSSVLG00005001138	GAST (ENSSVLG00005001171) #24	EIF1 (ENSSVLG00005001188) ##25	ENSSVLG00005001226 #26	KRT17 (ENSSVLG00005001282) #27	KRT16 (ENSSVLG00005001321) #28	KRT14 (ENSSVLG00005001357) #29	ENSSVLG00005001389 #30	KRT19 (ENSSVLG00005001412) #31	KRT15 (ENSSVLG00005001448) #32	KRT13 (ENSSVLG00005001499)	KRT36 (ENSSVLG00005001573) #34
Lagomorpha	ANCESTRAL SPECIES		ENSGT00390000016401	ENSGT00390000014272	ENSGT00940000156363	ENSGT00940000154971 #7	ENSGT00510000049735 #8	ENSGT00940000158799 #9	ENSGT00940000153173.b.b #10	ENSGT00940000157202 #11	ENSGT00940000157943.b #12	ENSGT00940000155338 #13	ENSGT00390000007911 #15	ENSGT00940000154881 #16	ENSGT00940000159275 #17	ENSGT00940000154664 #18	ENSGT00940000153814.b #21	ENSGT00940000156395 #22	ENSGT00940000162183 #23	ENSGT00390000014792 #24	ENSGT00390000015789.d.b.b ##25	ENSGT00940000160681.C #27	ENSGT00940000154602.b #28	ENSGT00940000154602.a #29	ENSGT00940000155258.t #31	ENSGT00940000154403.a.a #32	ENSGT00940000154403.a.b #33	ENSGT00940000161311 #34	ENSGT00940000161787 #35	ENSGT00940000161991 #36	ENSGT00940000163444	ENSGT00940000162088	ENSGT00940000153980.j.a.b.a.b #37
Rabbit	MODERN SPECIES	10	HCRT (ENSOCUG00000013324)	KCNH4 (ENSOCUG00000013312)	RAB5C (ENSOCUG00000013307) #7	HSPB9 (ENSOCUG00000013299) #8	KAT2A (ENSOCUG00000013285) #9	DHX58 (ENSOCUG00000013278) #10	ZNF385C (ENSOCUG00000013271) #11	NKIRAS2 (ENSOCUG00000013267) #12	DNAJC7 (ENSOCUG00000013255) #13	ODAD4 (ENSOCUG00000013236) #15	ACLY (ENSOCUG00000013212) #16	KLHL10 (ENSOCUG00000024581) #18	FKBP10 (ENSOCUG00000000611) #20	KLHL11 (ENSOCUG00000000614) #17	P3H4 (ENSOCUG00000007629) #21	JUP (ENSOCUG00000012063) #22	GAST (ENSOCUG00000024965) #24	ENSOCUG00000000604 ##25	KRT17 (ENSOCUG00000029569) #27	KRT16 (ENSOCUG00000011781) #28	KRT35 (ENSOCUG00000013084) #35	KRT15 (ENSOCUG00000013123) #32	KRT32 (ENSOCUG00000013079) #36	ENSOCUG00000014208	ENSOCUG00000009206	ENSOCUG00000011173	KRT34 (ENSOCUG00000014195)	ENSOCUG00000013096	KRT33A (ENSOCUG00000014192) ##37	KRTAP17-1 (ENSOCUG00000025222)	ENSOCUG00000024522
Pika	MODERN SPECIES	3821									ZNF385C (ENSOPRG00000008120) #11	NKIRAS2 (ENSOPRG00000008113) #12	DNAJC7 (ENSOPRG00000008093) #13	ODAD4 (ENSOPRG00000008065) #15	ACLY (ENSOPRG00000008041) #16	ENSOPRG00000008022 #17	KLHL10 (ENSOPRG00000008014) #18	JUP (ENSOPRG00000007992) #22	ENSOPRG00000007970 #23	GAST (ENSOPRG00000007965) #24	KRT17 (ENSOPRG00000007946) #27	KRT16 (ENSOPRG00000007938) #28	KRT14 (ENSOPRG00000007922) #29	KRT19 (ENSOPRG00000007908) #31	KRT15 (ENSOPRG00000007893) #32	ENSOPRG00000007873 #33	KRT36 (ENSOPRG00000007861) #34	KRT35 (ENSOPRG00000007848) #35	KRT32 (ENSOPRG00000007824) #36	ENSOPRG00000007809	ENSOPRG00000007790 #37	KRT34 (ENSOPRG00000007768)	ENSOPRG00000007755
Tree shrew	MODERN SPECIES	3947																JUP (ENSTBEG00000007076) #22	ENSTBEG00000006946 #23	ENSTBEG00000006930 ##25