Chordata	ANCESTRAL SPECIES																	ENSGT00940000157637 #22
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000157637.b #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000157637.b #22
Euteleostomi	ANCESTRAL SPECIES	151						ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000154419 #21	ENSGT00940000157637.b #22	ENSGT01030000234621.D	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00390000010184	ENSGT00940000165960	ENSGT01030000234590.B.a.a	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000156128.a
Sarcopterygii	ANCESTRAL SPECIES	220					ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245	ENSGT00940000154419 #21	ENSGT00940000157637.b #22	ENSGT01030000234621.D	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00390000010184
Tetrapoda	ANCESTRAL SPECIES	102	ENSGT00990000213051	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182866.D.d.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245	ENSGT00940000154419.b #21	ENSGT00940000157637.b #22	ENSGT01030000234621.D	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00390000010184	ENSGT00940000158661	ENSGT00940000158058	ENSGT00940000170600
Amniota	ANCESTRAL SPECIES	78	ENSGT00990000213051	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182866.D.d.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245	ENSGT00940000154419.a #20	ENSGT00940000157637.b #22
Mammalia	ANCESTRAL SPECIES	114										ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35
Theria	ANCESTRAL SPECIES	32	ENSGT00390000001520	ENSGT00940000160105	ENSGT00940000159295	ENSGT00950000182890.D.c.a.a.a.a.a	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37	ENSGT00940000161668
Eutheria	ANCESTRAL SPECIES	22	ENSGT00940000170602	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Boreoeutheria	ANCESTRAL SPECIES	12	ENSGT00940000170602	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Euarchontoglires	ANCESTRAL SPECIES	12	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Primates	ANCESTRAL SPECIES	11	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Haplorrhini	ANCESTRAL SPECIES	26	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Simiiformes	ANCESTRAL SPECIES	26	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000165469 #19	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000165469 #19	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000165469 #19	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Vervet Monkey	MODERN SPECIES	20	IFT22 (ENSCSAG00000018036) #7	FIS1 (ENSCSAG00000018035) #8	CLDN15 (ENSCSAG00000018031) #9	ZNHIT1 (ENSCSAG00000018027) #10	PLOD3 (ENSCSAG00000018025) #11	MOGAT3 (ENSCSAG00000018017) #12	NAT16 (ENSCSAG00000018014) #13	VGF (ENSCSAG00000019485) #14	AP1S1 (ENSCSAG00000018013) #15	SERPINE1 (ENSCSAG00000018011) #16	TRIM56 (ENSCSAG00000019486) #17	MUC17 (ENSCSAG00000018008) #18	MUC12 (ENSCSAG00000018005) #19	MUC3A (ENSCSAG00000018002) #20	ENSCSAG00000017999 #21	ACHE (ENSCSAG00000017998) #22	SRRT (ENSCSAG00000017996) #23	UFSP1 (ENSCSAG00000019487) #24	TRIP6 (ENSCSAG00000017994) #25	SLC12A9 (ENSCSAG00000017990) #26	EPHB4 (ENSCSAG00000017988) #27	ZAN (ENSCSAG00000017978) #28	EPO (ENSCSAG00000017939) #29	POP7 (ENSCSAG00000017937) #30	GIGYF1 (ENSCSAG00000017934) #31	GNB2 (ENSCSAG00000017932) #32	ACTL6B (ENSCSAG00000017930) #33	TFR2 (ENSCSAG00000017928) #34	MOSPD3 (ENSCSAG00000017925) #35	PCOLCE (ENSCSAG00000017924) #36	FBXO24 (ENSCSAG00000017922) #37
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000165469 #19	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Cercopithecinae_b	ANCESTRAL SPECIES	36	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00390000008783.k.b	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Olive baboon	MODERN SPECIES	14	ENSPANG00000043046	MYL10 (ENSPANG00000015089)	COL26A1 (ENSPANG00000025449)	IFT22 (ENSPANG00000006304) #7	FIS1 (ENSPANG00000020761) #8	CLDN15 (ENSPANG00000004771) #9	ZNHIT1 (ENSPANG00000026302) #10	PLOD3 (ENSPANG00000021830) #11	MOGAT3 (ENSPANG00000033690) #12	NAT16 (ENSPANG00000049908) #13	VGF (ENSPANG00000046568) #14	AP1S1 (ENSPANG00000018838) #15	SERPINE1 (ENSPANG00000021648) #16	TRIM56 (ENSPANG00000022402) #17	ENSPANG00000029875	ACHE (ENSPANG00000010756) #22	UFSP1 (ENSPANG00000051255) #24	SRRT (ENSPANG00000020763) #23	TRIP6 (ENSPANG00000000649) #25	SLC12A9 (ENSPANG00000007493) #26	EPHB4 (ENSPANG00000015854) #27	EPO (ENSPANG00000021927) #29	POP7 (ENSPANG00000006196) #30	GIGYF1 (ENSPANG00000018440) #31	GNB2 (ENSPANG00000018442) #32	ACTL6B (ENSPANG00000018332) #33	TFR2 (ENSPANG00000018333) #34	MOSPD3 (ENSPANG00000031105) #35	PCOLCE (ENSPANG00000018315) #36	FBXO24 (ENSPANG00000018316) #37	LRCH4 (ENSPANG00000018144)
Cercopithecinae_d	ANCESTRAL SPECIES	75													ENSGT00940000165469 #19	ENSGT00940000154419.a.b #20	ENSGT00390000008783.k.b	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Sooty mangabey	MODERN SPECIES	630													ENSCATG00000034376 #19	MUC3A (ENSCATG00000043755) #20	ENSCATG00000041730	ACHE (ENSCATG00000044129) #22	UFSP1 (ENSCATG00000012501) #24	SRRT (ENSCATG00000036306) #23	TRIP6 (ENSCATG00000042684) #25	SLC12A9 (ENSCATG00000034871) #26	EPHB4 (ENSCATG00000045373) #27	ZAN (ENSCATG00000034805) #28	EPO (ENSCATG00000038115) #29	POP7 (ENSCATG00000010371) #30	GIGYF1 (ENSCATG00000032522) #31	GNB2 (ENSCATG00000039234) #32	ACTL6B (ENSCATG00000041643) #33	TFR2 (ENSCATG00000029552) #34	MOSPD3 (ENSCATG00000019847) #35	PCOLCE (ENSCATG00000039149) #36	FBXO24 (ENSCATG00000039777) #37
Drill	MODERN SPECIES	930														MUC3A (ENSMLEG00000014565) #20	ENSMLEG00000035539	ACHE (ENSMLEG00000012390) #22	UFSP1 (ENSMLEG00000010638) #24	SRRT (ENSMLEG00000029479) #23	TRIP6 (ENSMLEG00000042224) #25	SLC12A9 (ENSMLEG00000039297) #26	EPHB4 (ENSMLEG00000042091) #27	ZAN (ENSMLEG00000025583) #28	EPO (ENSMLEG00000030361) #29	POP7 (ENSMLEG00000027597) #30	GIGYF1 (ENSMLEG00000030515) #31	GNB2 (ENSMLEG00000036025) #32	ACTL6B (ENSMLEG00000031514) #33	TFR2 (ENSMLEG00000044255) #34	MOSPD3 (ENSMLEG00000041217) #35	PCOLCE (ENSMLEG00000037592) #36	LRCH4 (ENSMLEG00000008121)
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000165469 #19	ENSGT00390000008783.k.b	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b.a #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000165469 #19	ENSGT01030000240153	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00390000005492 #23	ENSGT00940000154273.b.a #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.a.a.b.a.b.d.a.a.a	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Rhesus	MODERN SPECIES	13	IFT22 (ENSMMUG00000006136) #7	FIS1 (ENSMMUG00000052148) #8	CLDN15 (ENSMMUG00000007839) #9	ZNHIT1 (ENSMMUG00000006951) #10	PLOD3 (ENSMMUG00000006949) #11	MOGAT3 (ENSMMUG00000012213) #12	NAT16 (ENSMMUG00000049346) #13	VGF (ENSMMUG00000010164) #14	AP1S1 (ENSMMUG00000010162) #15	SERPINE1 (ENSMMUG00000009926) #16	TRIM56 (ENSMMUG00000017366) #17	ENSMMUG00000052734 #19	ENSMMUG00000006081	ENSMMUG00000063274	MUC3A (ENSMMUG00000061514) #20	ACHE (ENSMMUG00000058568) #22	SRRT (ENSMMUG00000021255) #23	TRIP6 (ENSMMUG00000021252) #25	SLC12A9 (ENSMMUG00000021248) #26	EPHB4 (ENSMMUG00000007375) #27	EPO (ENSMMUG00000022863) #29	POP7 (ENSMMUG00000008581) #30	GIGYF1 (ENSMMUG00000004082) #31	GNB2 (ENSMMUG00000004080) #32	ENSMMUG00000063216	ACTL6B (ENSMMUG00000007461) #33	TFR2 (ENSMMUG00000002950) #34	MOSPD3 (ENSMMUG00000002949) #35	PCOLCE (ENSMMUG00000002947) #36	FBXO24 (ENSMMUG00000015309) #37	LRCH4 (ENSMMUG00000015311)
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000046321	ZNHIT1 (ENSMFAG00000034086) #10	PLOD3 (ENSMFAG00000033241) #11	MOGAT3 (ENSMFAG00000033603) #12	NAT16 (ENSMFAG00000051311) #13	VGF (ENSMFAG00000040047) #14	AP1S1 (ENSMFAG00000030473) #15	SERPINE1 (ENSMFAG00000041064) #16	ENSMFAG00000065122	ENSMFAG00000030488 #17	MUC17 (ENSMFAG00000052734) #18	ENSMFAG00000057318 #19	ENSMFAG00000062181	ENSMFAG00000048383	ENSMFAG00000046140	ACHE (ENSMFAG00000037867) #22	SRRT (ENSMFAG00000033745) #23	ENSMFAG00000047956	TRIP6 (ENSMFAG00000035576) #25	SLC12A9 (ENSMFAG00000035511) #26	EPHB4 (ENSMFAG00000035528) #27	ZAN (ENSMFAG00000039018) #28	EPO (ENSMFAG00000044414) #29	POP7 (ENSMFAG00000027783) #30	GIGYF1 (ENSMFAG00000033735) #31	GNB2 (ENSMFAG00000039171) #32	ENSMFAG00000065758	ACTL6B (ENSMFAG00000038744) #33	TFR2 (ENSMFAG00000000760) #34	MOSPD3 (ENSMFAG00000044802) #35	PCOLCE (ENSMFAG00000038601) #36
Pig-tailed macaque	MODERN SPECIES	80													ENSMNEG00000041983	ENSMNEG00000037162	ENSMNEG00000032631	ACHE (ENSMNEG00000040326) #22	SRRT (ENSMNEG00000041864) #23	UFSP1 (ENSMNEG00000023371) #24	TRIP6 (ENSMNEG00000039884) #25	SLC12A9 (ENSMNEG00000035601) #26	EPHB4 (ENSMNEG00000029951) #27	ZAN (ENSMNEG00000033779) #28	EPO (ENSMNEG00000040212) #29	GIGYF1 (ENSMNEG00000042728) #31	GNB2 (ENSMNEG00000028982) #32	ACTL6B (ENSMNEG00000035680) #33	TFR2 (ENSMNEG00000040655) #34	MOSPD3 (ENSMNEG00000027355) #35	PCOLCE (ENSMNEG00000041119) #36	FBXO24 (ENSMNEG00000032852) #37	LRCH4 (ENSMNEG00000029829)
Rhinopithecus	ANCESTRAL SPECIES	46															ENSGT00390000008783.k.b	ENSGT00940000157637.b #22	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37	ENSGT00940000161668
Black snub-nosed monkey	MODERN SPECIES	814																ACHE (ENSRBIG00000042452) #22	SRRT (ENSRBIG00000035718) #23	TRIP6 (ENSRBIG00000028350) #25	SLC12A9 (ENSRBIG00000032830) #26	EPHB4 (ENSRBIG00000010766) #27	ZAN (ENSRBIG00000031435) #28	EPO (ENSRBIG00000044276) #29	POP7 (ENSRBIG00000002671) #30	GIGYF1 (ENSRBIG00000035889) #31	GNB2 (ENSRBIG00000032468) #32	ACTL6B (ENSRBIG00000030446) #33	TFR2 (ENSRBIG00000039815) #34	MOSPD3 (ENSRBIG00000028825) #35	PCOLCE (ENSRBIG00000031146) #36	FBXO24 (ENSRBIG00000042257) #37	LRCH4 (ENSRBIG00000041522)
Golden snub-nosed monkey	MODERN SPECIES	2033															ENSRROG00000033097	ACHE (ENSRROG00000011945) #22	SRRT (ENSRROG00000030622) #23	TRIP6 (ENSRROG00000031454) #25	SLC12A9 (ENSRROG00000029189) #26	EPHB4 (ENSRROG00000044335) #27	ZAN (ENSRROG00000044176) #28	EPO (ENSRROG00000045285) #29	POP7 (ENSRROG00000028543) #30	GIGYF1 (ENSRROG00000037892) #31	GNB2 (ENSRROG00000043585) #32	ACTL6B (ENSRROG00000036394) #33	TFR2 (ENSRROG00000000044) #34	MOSPD3 (ENSRROG00000041508) #35	PCOLCE (ENSRROG00000038027) #36	FBXO24 (ENSRROG00000034369) #37	LRCH4 (ENSRROG00000043300)
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000165469 #19	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Hominidae	ANCESTRAL SPECIES	26	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000165469 #19	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000165469 #19	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123.a #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Gorilla	MODERN SPECIES	20	ENSGGOG00000023938	ENSGGOG00000016960	MYL10 (ENSGGOG00000028607)	COL26A1 (ENSGGOG00000014080)	IFT22 (ENSGGOG00000015347) #7	FIS1 (ENSGGOG00000044215) #8	CLDN15 (ENSGGOG00000008769) #9	ZNHIT1 (ENSGGOG00000016713) #10	PLOD3 (ENSGGOG00000016700) #11	MOGAT3 (ENSGGOG00000016689) #12	NAT16 (ENSGGOG00000002186) #13	ENSGGOG00000027138 #14	AP1S1 (ENSGGOG00000027060) #15	SERPINE1 (ENSGGOG00000007178) #16	TRIM56 (ENSGGOG00000000406) #17	ACHE (ENSGGOG00000001511) #22	UFSP1 (ENSGGOG00000027913) #24	SRRT (ENSGGOG00000001508) #23	TRIP6 (ENSGGOG00000001505) #25	SLC12A9 (ENSGGOG00000001502) #26	EPHB4 (ENSGGOG00000015248) #27	ENSGGOG00000040553 #28	ENSGGOG00000043149 #29	ENSGGOG00000040087 #29	ENSGGOG00000041226 #29	POP7 (ENSGGOG00000016492) #30	GIGYF1 (ENSGGOG00000005811) #31	GNB2 (ENSGGOG00000005805) #32	ACTL6B (ENSGGOG00000016502) #33	TFR2 (ENSGGOG00000012162) #34	MOSPD3 (ENSGGOG00000010749) #35
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000165469 #19	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123.a #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Pan	ANCESTRAL SPECIES	13	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123.b #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Bonobo	MODERN SPECIES	20	CUX1 (ENSPPAG00000031440)	MYL10 (ENSPPAG00000042833)	COL26A1 (ENSPPAG00000030093)	IFT22 (ENSPPAG00000030649) #7	FIS1 (ENSPPAG00000036372) #8	CLDN15 (ENSPPAG00000036048) #9	ZNHIT1 (ENSPPAG00000032592) #10	PLOD3 (ENSPPAG00000038349) #11	MOGAT3 (ENSPPAG00000043591) #12	NAT16 (ENSPPAG00000029678) #13	ENSPPAG00000031260 #14	AP1S1 (ENSPPAG00000031400) #15	SERPINE1 (ENSPPAG00000043881) #16	TRIM56 (ENSPPAG00000007746) #17	ENSPPAG00000031642 #20	ACHE (ENSPPAG00000034898) #22	UFSP1 (ENSPPAG00000001810) #24	SRRT (ENSPPAG00000041090) #23	TRIP6 (ENSPPAG00000031817) #25	SLC12A9 (ENSPPAG00000043841) #26	EPHB4 (ENSPPAG00000034203) #27	ENSPPAG00000038269 #28	EPO (ENSPPAG00000042182) #29	POP7 (ENSPPAG00000015339) #30	GIGYF1 (ENSPPAG00000029734) #31	GNB2 (ENSPPAG00000029711) #32	ACTL6B (ENSPPAG00000034816) #33	TFR2 (ENSPPAG00000032823) #34	ENSPPAG00000043356 #35	PCOLCE (ENSPPAG00000040383) #36	FBXO24 (ENSPPAG00000039899) #37
Chimpanzee	MODERN SPECIES	20	ENSPTRG00000040439	SH2B2 (ENSPTRG00000019534)	CUX1 (ENSPTRG00000019531)	MYL10 (ENSPTRG00000019530)	ENSPTRG00000050773	IFT22 (ENSPTRG00000019528) #7	ENSPTRG00000019527 #8	CLDN15 (ENSPTRG00000033771) #9	ZNHIT1 (ENSPTRG00000019525) #10	PLOD3 (ENSPTRG00000019524) #11	MOGAT3 (ENSPTRG00000019523) #12	NAT16 (ENSPTRG00000019522) #13	AP1S1 (ENSPTRG00000019520) #15	SERPINE1 (ENSPTRG00000019519) #16	TRIM56 (ENSPTRG00000019518) #17	ACHE (ENSPTRG00000019514) #22	UFSP1 (ENSPTRG00000042577) #24	SRRT (ENSPTRG00000019511) #23	TRIP6 (ENSPTRG00000019510) #25	SLC12A9 (ENSPTRG00000019509) #26	EPHB4 (ENSPTRG00000019507) #27	ENSPTRG00000045801 #28	EPO (ENSPTRG00000019505) #29	POP7 (ENSPTRG00000019504) #30	GIGYF1 (ENSPTRG00000019503) #31	GNB2 (ENSPTRG00000019501) #32	ACTL6B (ENSPTRG00000019500) #33	TFR2 (ENSPTRG00000019499) #34	MOSPD3 (ENSPTRG00000019498) #35	PCOLCE (ENSPTRG00000019497) #36	FBXO24 (ENSPTRG00000019496) #37
Human	MODERN SPECIES	19	COL26A1 (ENSG00000160963)	IFT22 (ENSG00000128581) #7	FIS1 (ENSG00000214253) #8	CLDN15 (ENSG00000106404) #9	ZNHIT1 (ENSG00000106400) #10	PLOD3 (ENSG00000106397) #11	MOGAT3 (ENSG00000106384) #12	NAT16 (ENSG00000167011) #13	VGF (ENSG00000128564) #14	AP1S1 (ENSG00000106367) #15	SERPINE1 (ENSG00000106366) #16	TRIM56 (ENSG00000169871) #17	MUC17 (ENSG00000169876) #18	MUC12 (ENSG00000205277) #19	MUC3A (ENSG00000169894) #20	ACHE (ENSG00000087085) #22	UFSP1 (ENSG00000176125) #24	SRRT (ENSG00000087087) #23	TRIP6 (ENSG00000087077) #25	SLC12A9 (ENSG00000146828) #26	EPHB4 (ENSG00000196411) #27	ZAN (ENSG00000146839) #28	EPO (ENSG00000130427) #29	POP7 (ENSG00000172336) #30	GIGYF1 (ENSG00000146830) #31	GNB2 (ENSG00000172354) #32	ACTL6B (ENSG00000077080) #33	TFR2 (ENSG00000106327) #34	MOSPD3 (ENSG00000106330) #35	PCOLCE (ENSG00000106333) #36	FBXO24 (ENSG00000106336) #37
Orangutan	MODERN SPECIES	20	MYL10 (ENSPPYG00000017450)	COL26A1 (ENSPPYG00000017449)	IFT22 (ENSPPYG00000040987) #7	ENSPPYG00000017446	CLDN15 (ENSPPYG00000017445) #9	ENSPPYG00000034104 #10	PLOD3 (ENSPPYG00000017444) #11	MOGAT3 (ENSPPYG00000017442) #12	NAT16 (ENSPPYG00000017441) #13	ENSPPYG00000017440 #14	AP1S1 (ENSPPYG00000017439) #15	ENSPPYG00000017438 #16	ENSPPYG00000037390 #16	TRIM56 (ENSPPYG00000017437) #17	MUC3A (ENSPPYG00000030266) #20	ACHE (ENSPPYG00000017434) #22	ENSPPYG00000037915 #24	SRRT (ENSPPYG00000017432) #23	TRIP6 (ENSPPYG00000017431) #25	SLC12A9 (ENSPPYG00000017430) #26	EPHB4 (ENSPPYG00000017429) #27	ZAN (ENSPPYG00000017428) #28	EPO (ENSPPYG00000017427) #29	POP7 (ENSPPYG00000017426) #30	GIGYF1 (ENSPPYG00000017425) #31	ENSPPYG00000017424 #32	ACTL6B (ENSPPYG00000017423) #33	TFR2 (ENSPPYG00000017422) #34	ENSPPYG00000017421 #35	PCOLCE (ENSPPYG00000017420) #36	FBXO24 (ENSPPYG00000017419) #37
Gibbon	MODERN SPECIES	7	CUX1 (ENSNLEG00000008310)	MYL10 (ENSNLEG00000008305)	COL26A1 (ENSNLEG00000008301)	ENSNLEG00000008298	FIS1 (ENSNLEG00000033533) #8	CLDN15 (ENSNLEG00000008271) #9	ZNHIT1 (ENSNLEG00000008252) #10	PLOD3 (ENSNLEG00000008234) #11	ENSNLEG00000008228 #12	NAT16 (ENSNLEG00000029483) #13	AP1S1 (ENSNLEG00000031980) #15	SERPINE1 (ENSNLEG00000008183) #16	TRIM56 (ENSNLEG00000029001) #17	ENSNLEG00000033728 #19	ENSNLEG00000008166 #20	ACHE (ENSNLEG00000012016) #22	UFSP1 (ENSNLEG00000018876) #24	SRRT (ENSNLEG00000011987) #23	TRIP6 (ENSNLEG00000035253) #25	SLC12A9 (ENSNLEG00000011983) #26	EPHB4 (ENSNLEG00000011945) #27	ZAN (ENSNLEG00000033565) #28	EPO (ENSNLEG00000011941) #29	POP7 (ENSNLEG00000011939) #30	GIGYF1 (ENSNLEG00000011929) #31	GNB2 (ENSNLEG00000011920) #32	ACTL6B (ENSNLEG00000011889) #33	TFR2 (ENSNLEG00000011885) #34	PCOLCE (ENSNLEG00000011817) #36	ENSNLEG00000011802 #37	LRCH4 (ENSNLEG00000011789)
Platyrrhini	ANCESTRAL SPECIES	19	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Mas night monkey	MODERN SPECIES	551																ACHE (ENSANAG00000035123) #22	SRRT (ENSANAG00000031718) #23	TRIP6 (ENSANAG00000032917) #25	SLC12A9 (ENSANAG00000030651) #26	EPHB4 (ENSANAG00000028005) #27	EPO (ENSANAG00000031142) #29	POP7 (ENSANAG00000019054) #30	GIGYF1 (ENSANAG00000033343) #31	GNB2 (ENSANAG00000024187) #32	ACTL6B (ENSANAG00000032333) #33	TFR2 (ENSANAG00000030010) #34	MOSPD3 (ENSANAG00000027443) #35	PCOLCE (ENSANAG00000037132) #36	FBXO24 (ENSANAG00000034628) #37	LRCH4 (ENSANAG00000036001)	SAP25 (ENSANAG00000026948)
Cebidae	ANCESTRAL SPECIES	24	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Marmoset	MODERN SPECIES	11	SH2B2 (ENSCJAG00000016164)	CUX1 (ENSCJAG00000016076)	MYL10 (ENSCJAG00000016065)	COL26A1 (ENSCJAG00000016061)	IFT22 (ENSCJAG00000047492) #7	FIS1 (ENSCJAG00000016053) #8	CLDN15 (ENSCJAG00000016040) #9	ZNHIT1 (ENSCJAG00000016034) #10	PLOD3 (ENSCJAG00000016006) #11	MOGAT3 (ENSCJAG00000015984) #12	NAT16 (ENSCJAG00000015983) #13	VGF (ENSCJAG00000074993) #14	AP1S1 (ENSCJAG00000015968) #15	SERPINE1 (ENSCJAG00000015954) #16	TRIM56 (ENSCJAG00000015951) #17	ACHE (ENSCJAG00000014906) #22	UFSP1 (ENSCJAG00000054818) #24	SRRT (ENSCJAG00000014917) #23	TRIP6 (ENSCJAG00000014944) #25	SLC12A9 (ENSCJAG00000014963) #26	EPHB4 (ENSCJAG00000014974) #27	EPO (ENSCJAG00000015048) #29	POP7 (ENSCJAG00000015056) #30	GIGYF1 (ENSCJAG00000015057) #31	GNB2 (ENSCJAG00000015074) #32	ACTL6B (ENSCJAG00000015106) #33	TFR2 (ENSCJAG00000015136) #34	MOSPD3 (ENSCJAG00000041075) #35	PCOLCE (ENSCJAG00000015201) #36	FBXO24 (ENSCJAG00000015213) #37	ENSCJAG00000083711
Cebidae_a	ANCESTRAL SPECIES	19	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37	ENSGT00940000161668
Capuchin	MODERN SPECIES	82	SH2B2 (ENSCCAG00000021819)	CUX1 (ENSCCAG00000032819)	ENSCCAG00000033450	MYL10 (ENSCCAG00000020371)	COL26A1 (ENSCCAG00000036640)	IFT22 (ENSCCAG00000027881) #7	FIS1 (ENSCCAG00000030467) #8	CLDN15 (ENSCCAG00000022193) #9	ZNHIT1 (ENSCCAG00000023307) #10	PLOD3 (ENSCCAG00000031443) #11	MOGAT3 (ENSCCAG00000025358) #12	NAT16 (ENSCCAG00000029230) #13	AP1S1 (ENSCCAG00000000838) #15	SERPINE1 (ENSCCAG00000027891) #16	ENSCCAG00000007480 #17	ACHE (ENSCCAG00000009910) #22	SRRT (ENSCCAG00000015877) #23	TRIP6 (ENSCCAG00000036886) #25	SLC12A9 (ENSCCAG00000026691) #26	EPHB4 (ENSCCAG00000027801) #27	ZAN (ENSCCAG00000012876) #28	ENSCCAG00000035173	EPO (ENSCCAG00000033333) #29	POP7 (ENSCCAG00000008898) #30	GIGYF1 (ENSCCAG00000014412) #31	GNB2 (ENSCCAG00000029891) #32	ACTL6B (ENSCCAG00000024049) #33	TFR2 (ENSCCAG00000025180) #34	MOSPD3 (ENSCCAG00000034234) #35	PCOLCE (ENSCCAG00000037186) #36	FBXO24 (ENSCCAG00000034715) #37
Bolivian squirrel monkey	MODERN SPECIES	104	SH2B2 (ENSSBOG00000027439)	CUX1 (ENSSBOG00000021031)	MYL10 (ENSSBOG00000023532)	COL26A1 (ENSSBOG00000030793)	IFT22 (ENSSBOG00000027596) #7	FIS1 (ENSSBOG00000035440) #8	CLDN15 (ENSSBOG00000030925) #9	ZNHIT1 (ENSSBOG00000026479) #10	PLOD3 (ENSSBOG00000020136) #11	MOGAT3 (ENSSBOG00000021490) #12	NAT16 (ENSSBOG00000020819) #13	VGF (ENSSBOG00000030983) #14	AP1S1 (ENSSBOG00000033608) #15	SERPINE1 (ENSSBOG00000027844) #16	TRIM56 (ENSSBOG00000022470) #17	ACHE (ENSSBOG00000030837) #22	SRRT (ENSSBOG00000033570) #23	TRIP6 (ENSSBOG00000035870) #25	SLC12A9 (ENSSBOG00000031244) #26	EPHB4 (ENSSBOG00000033071) #27	ZAN (ENSSBOG00000032041) #28	EPO (ENSSBOG00000021864) #29	POP7 (ENSSBOG00000005173) #30	GIGYF1 (ENSSBOG00000031114) #31	GNB2 (ENSSBOG00000026191) #32	ACTL6B (ENSSBOG00000003118) #33	TFR2 (ENSSBOG00000032774) #34	MOSPD3 (ENSSBOG00000025292) #35	PCOLCE (ENSSBOG00000025920) #36	FBXO24 (ENSSBOG00000029465) #37	LRCH4 (ENSSBOG00000012173)
Tarsier	MODERN SPECIES	1810																ACHE (ENSTSYG00000026373) #22	SRRT (ENSTSYG00000036426) #23
Strepsirrhini	ANCESTRAL SPECIES	14	ENSGT00940000163742	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00390000005003	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Mouse lemur	MODERN SPECIES	8	MYL10 (ENSMICG00000035701)	COL26A1 (ENSMICG00000010259)	IFT22 (ENSMICG00000005451) #7	FIS1 (ENSMICG00000031412) #8	CLDN15 (ENSMICG00000047492) #9	ZNHIT1 (ENSMICG00000016065) #10	MOGAT3 (ENSMICG00000005416) #12	ENSMICG00000047531 #11	ENSMICG00000033937 #11	ENSMICG00000033002	NAT16 (ENSMICG00000005411) #13	AP1S1 (ENSMICG00000005406) #15	SERPINE1 (ENSMICG00000046603) #16	TRIM56 (ENSMICG00000037286) #17	ENSMICG00000045596 #20	ACHE (ENSMICG00000034304) #22	SRRT (ENSMICG00000009471) #23	TRIP6 (ENSMICG00000009465) #25	SLC12A9 (ENSMICG00000009453) #26	EPHB4 (ENSMICG00000009440) #27	ZAN (ENSMICG00000009407) #28	EPO (ENSMICG00000009402) #29	POP7 (ENSMICG00000009398) #30	GIGYF1 (ENSMICG00000009384) #31	GNB2 (ENSMICG00000009371) #32	ACTL6B (ENSMICG00000009362) #33	TFR2 (ENSMICG00000009350) #34	MOSPD3 (ENSMICG00000009344) #35	PCOLCE (ENSMICG00000009333) #36	FBXO24 (ENSMICG00000009325) #37	LRCH4 (ENSMICG00000012568)
Lemuriformes_a	ANCESTRAL SPECIES	16																ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Coquerels sifaka	MODERN SPECIES	155																ACHE (ENSPCOG00000020101) #22	SRRT (ENSPCOG00000025751) #23	TRIP6 (ENSPCOG00000009196) #25	SLC12A9 (ENSPCOG00000028375) #26	EPHB4 (ENSPCOG00000022099) #27	ZAN (ENSPCOG00000014097) #28	EPO (ENSPCOG00000008063) #29	POP7 (ENSPCOG00000009302) #30	GIGYF1 (ENSPCOG00000022650) #31	GNB2 (ENSPCOG00000013524) #32	ACTL6B (ENSPCOG00000019888) #33	TFR2 (ENSPCOG00000024219) #34	MOSPD3 (ENSPCOG00000027444) #35	PCOLCE (ENSPCOG00000026063) #36	FBXO24 (ENSPCOG00000019946) #37	LRCH4 (ENSPCOG00000001960)
Greater bamboo lemur	MODERN SPECIES	481																ACHE (ENSPSMG00000019061) #22	UFSP1 (ENSPSMG00000019074) #24	SRRT (ENSPSMG00000019125) #23	TRIP6 (ENSPSMG00000019165) #25	SLC12A9 (ENSPSMG00000019186) #26	EPHB4 (ENSPSMG00000019234) #27	ZAN (ENSPSMG00000019261) #28
Bushbaby	MODERN SPECIES	257														ENSOGAG00000003627 #18	ENSOGAG00000027904 #20	ACHE (ENSOGAG00000017244) #22	UFSP1 (ENSOGAG00000017243) #24	SRRT (ENSOGAG00000017242) #23	TRIP6 (ENSOGAG00000013688) #25	SLC12A9 (ENSOGAG00000013681) #26	EPHB4 (ENSOGAG00000009355) #27	ENSOGAG00000009344 #28	EPO (ENSOGAG00000024564) #29	POP7 (ENSOGAG00000009340) #30	GIGYF1 (ENSOGAG00000026678) #31	GNB2 (ENSOGAG00000015133) #32	ACTL6B (ENSOGAG00000005639) #33	TFR2 (ENSOGAG00000003381) #34	MOSPD3 (ENSOGAG00000029348) #35	PCOLCE (ENSOGAG00000031809) #36	FBXO24 (ENSOGAG00000030485) #37
Euarchontoglires_A	ANCESTRAL SPECIES	12	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Tree shrew	MODERN SPECIES	4885																ACHE (ENSTBEG00000006472) #22	UFSP1 (ENSTBEG00000006421) #24	SRRT (ENSTBEG00000005212) #23	TRIP6 (ENSTBEG00000004974) #25	ENSTBEG00000004329 #27
Glires	ANCESTRAL SPECIES	11	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Rodentia	ANCESTRAL SPECIES	11	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Sciuridae	ANCESTRAL SPECIES	9	ENSGT00940000163742	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592.n #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Marmotini	ANCESTRAL SPECIES	3	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592.n #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000168691	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Marmotini_b	ANCESTRAL SPECIES	1	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592.n #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000168691	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Squirrel	MODERN SPECIES	143	MYL10 (ENSSTOG00000028388)	COL26A1 (ENSSTOG00000020628)	IFT22 (ENSSTOG00000012125) #7	FIS1 (ENSSTOG00000024383) #8	CLDN15 (ENSSTOG00000000766) #9	ZNHIT1 (ENSSTOG00000000762) #10	PLOD3 (ENSSTOG00000022109) #11	MOGAT3 (ENSSTOG00000026724) #12	VGF (ENSSTOG00000000747) #14	AP1S1 (ENSSTOG00000000744) #15	SERPINE1 (ENSSTOG00000000741) #16	TRIM56 (ENSSTOG00000019886) #17	ENSSTOG00000031943 #18	ENSSTOG00000019617 #20	ENSSTOG00000031100	ACHE (ENSSTOG00000026914) #22	UFSP1 (ENSSTOG00000028717) #24	SRRT (ENSSTOG00000013776) #23	TRIP6 (ENSSTOG00000028136) #25	SLC12A9 (ENSSTOG00000013755) #26	EPHB4 (ENSSTOG00000013737) #27	EPO (ENSSTOG00000013659) #29	POP7 (ENSSTOG00000030883) #30	GIGYF1 (ENSSTOG00000024993) #31	GNB2 (ENSSTOG00000019633) #32	ACTL6B (ENSSTOG00000013646) #33	TFR2 (ENSSTOG00000013621) #34	MOSPD3 (ENSSTOG00000013615) #35	PCOLCE (ENSSTOG00000019417) #36	FBXO24 (ENSSTOG00000007715) #37	LRCH4 (ENSSTOG00000007678)
Arctic ground squirrel	MODERN SPECIES	574														ENSUPAG00010017467 #20	ENSUPAG00010017472	ACHE (ENSUPAG00010017479) #22	UFSP1 (ENSUPAG00010017487) #24	SRRT (ENSUPAG00010017492) #23	TRIP6 (ENSUPAG00010017526) #25	SLC12A9 (ENSUPAG00010017536) #26	EPHB4 (ENSUPAG00010017548) #27	ENSUPAG00010017584 #28	EPO (ENSUPAG00010017614) #29	POP7 (ENSUPAG00010017628) #30	GIGYF1 (ENSUPAG00010017634) #31	GNB2 (ENSUPAG00010017668) #32	ACTL6B (ENSUPAG00010017680) #33	TFR2 (ENSUPAG00010017699) #34	MOSPD3 (ENSUPAG00010017720) #35	PCOLCE (ENSUPAG00010017727) #36	FBXO24 (ENSUPAG00010017761) #37
Alpin marmot	MODERN SPECIES	28	ENSMMMG00000011411	MYL10 (ENSMMMG00000011484)	IFT22 (ENSMMMG00000011493) #7	FIS1 (ENSMMMG00000011547) #8	CLDN15 (ENSMMMG00000011561) #9	ZNHIT1 (ENSMMMG00000011584) #10	PLOD3 (ENSMMMG00000011624) #11	MOGAT3 (ENSMMMG00000011646) #12	VGF (ENSMMMG00000011693) #14	AP1S1 (ENSMMMG00000011698) #15	SERPINE1 (ENSMMMG00000011702) #16	ENSMMMG00000011720 #17	ENSMMMG00000011723 #18	ENSMMMG00000011737 #20	ENSMMMG00000011748	ACHE (ENSMMMG00000011756) #22	UFSP1 (ENSMMMG00000011777) #24	SRRT (ENSMMMG00000011778) #23	TRIP6 (ENSMMMG00000011815) #25	SLC12A9 (ENSMMMG00000011827) #26	EPHB4 (ENSMMMG00000011848) #27	EPO (ENSMMMG00000012087) #29	POP7 (ENSMMMG00000012091) #30	GIGYF1 (ENSMMMG00000012096) #31	GNB2 (ENSMMMG00000012132) #32	ACTL6B (ENSMMMG00000012165) #33	TFR2 (ENSMMMG00000012187) #34	MOSPD3 (ENSMMMG00000012218) #35	PCOLCE (ENSMMMG00000012236) #36	FBXO24 (ENSMMMG00000012254) #37	LRCH4 (ENSMMMG00000012293)
Eurasian red squirrel	MODERN SPECIES	9	ENSSVLG00005019119	MYL10 (ENSSVLG00005018944)	COL26A1 (ENSSVLG00005018701)	IFT22 (ENSSVLG00005018611) #7	FIS1 (ENSSVLG00005018476) #8	CLDN15 (ENSSVLG00005018381) #9	ZNHIT1 (ENSSVLG00005018341) #10	PLOD3 (ENSSVLG00005018296) #11	ENSSVLG00005018185 ##12	MOGAT3 (ENSSVLG00005017967) #12	VGF (ENSSVLG00005017867) #14	AP1S1 (ENSSVLG00005017778) #15	SERPINE1 (ENSSVLG00005017728) #16	TRIM56 (ENSSVLG00005017696) #17	ENSSVLG00005017593 #18	ACHE (ENSSVLG00005017422) #22	UFSP1 (ENSSVLG00005017391) #24	SRRT (ENSSVLG00005017306) #23	TRIP6 (ENSSVLG00005017267) #25	SLC12A9 (ENSSVLG00005017109) #26	EPHB4 (ENSSVLG00005025419) #27	ZAN (ENSSVLG00005025350) #28	EPO (ENSSVLG00005025319) #29	POP7 (ENSSVLG00005025314) #30	GIGYF1 (ENSSVLG00005025302) #31	GNB2 (ENSSVLG00005025281) #32	ACTL6B (ENSSVLG00005025256) #33	TFR2 (ENSSVLG00005025213) #34	MOSPD3 (ENSSVLG00005025176) #35	PCOLCE (ENSSVLG00005025143) #36	FBXO24 (ENSSVLG00005025042) #37
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Hystricomorpha_b	ANCESTRAL SPECIES	38	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37	ENSGT00940000161668
Long-tailed chinchilla	MODERN SPECIES	280															ENSCLAG00000003043 #20	ACHE (ENSCLAG00000003264) #22	SRRT (ENSCLAG00000007568) #23	TRIP6 (ENSCLAG00000001804) #25	SLC12A9 (ENSCLAG00000001948) #26	EPHB4 (ENSCLAG00000002064) #27	ZAN (ENSCLAG00000001299) #28	EPO (ENSCLAG00000001391) #29	POP7 (ENSCLAG00000001541) #30	GIGYF1 (ENSCLAG00000001568) #31	GNB2 (ENSCLAG00000001809) #32	ACTL6B (ENSCLAG00000001889) #33	TFR2 (ENSCLAG00000001976) #34	MOSPD3 (ENSCLAG00000001074) #35	PCOLCE (ENSCLAG00000001234) #36	FBXO24 (ENSCLAG00000001324) #37	LRCH4 (ENSCLAG00000001389)
Degu	MODERN SPECIES	76	ENSODEG00000020369	MYL10 (ENSODEG00000016366)	COL26A1 (ENSODEG00000016006)	IFT22 (ENSODEG00000016441) #7	ENSODEG00000016143 #8	CLDN15 (ENSODEG00000016334) #9	ZNHIT1 (ENSODEG00000015978) #10	PLOD3 (ENSODEG00000016528) #11	VGF (ENSODEG00000016534) #14	AP1S1 (ENSODEG00000015737) #15	SERPINE1 (ENSODEG00000016414) #16	TRIM56 (ENSODEG00000016293) #17	ENSODEG00000015770 #18	ENSODEG00000015878 #20	ENSODEG00000020377	ACHE (ENSODEG00000016532) #22	SRRT (ENSODEG00000016856) #23	TRIP6 (ENSODEG00000016732) #25	SLC12A9 (ENSODEG00000016182) #26	EPHB4 (ENSODEG00000016238) #27	EPO (ENSODEG00000016349) #29	POP7 (ENSODEG00000020363) #30	GIGYF1 (ENSODEG00000016368) #31	GNB2 (ENSODEG00000016384) #32	ACTL6B (ENSODEG00000016158) #33	TFR2 (ENSODEG00000016854) #34	PCOLCE (ENSODEG00000016650) #36	FBXO24 (ENSODEG00000016232) #37	LRCH4 (ENSODEG00000017054)	AGFG2 (ENSODEG00000016582)	NYAP1 (ENSODEG00000016669)
Guinea pig	MODERN SPECIES	30	SH2B2 (ENSCPOG00000007558)	CUX1 (ENSCPOG00000008564)	MYL10 (ENSCPOG00000022246)	COL26A1 (ENSCPOG00000032713)	IFT22 (ENSCPOG00000035118) #7	FIS1 (ENSCPOG00000021728) #8	CLDN15 (ENSCPOG00000026288) #9	ZNHIT1 (ENSCPOG00000032415) #10	PLOD3 (ENSCPOG00000002777) #11	VGF (ENSCPOG00000013537) #14	AP1S1 (ENSCPOG00000013536) #15	SERPINE1 (ENSCPOG00000000174) #16	TRIM56 (ENSCPOG00000034485) #17	ENSCPOG00000030234 #18	ENSCPOG00000038634 #20	ACHE (ENSCPOG00000001746) #22	SRRT (ENSCPOG00000001739) #23	UFSP1 (ENSCPOG00000001745) #24	TRIP6 (ENSCPOG00000001737) #25	SLC12A9 (ENSCPOG00000001735) #26	EPHB4 (ENSCPOG00000014491) #27	EPO (ENSCPOG00000021586) #29	POP7 (ENSCPOG00000005767) #30	GIGYF1 (ENSCPOG00000013604) #31	GNB2 (ENSCPOG00000019845) #32	ACTL6B (ENSCPOG00000005145) #33	TFR2 (ENSCPOG00000011162) #34	MOSPD3 (ENSCPOG00000006113) #35	PCOLCE (ENSCPOG00000025385) #36	FBXO24 (ENSCPOG00000006109) #37	LRCH4 (ENSCPOG00000006102)
Rodentia_B	ANCESTRAL SPECIES	29	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Myomorpha	ANCESTRAL SPECIES	31	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Muroidea	ANCESTRAL SPECIES	40	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Muroidea_A	ANCESTRAL SPECIES	21	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Cricetidae	ANCESTRAL SPECIES	20	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Cricetidae_B	ANCESTRAL SPECIES	19	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Northern American deer mouse	MODERN SPECIES	15	Myl10 (ENSPEMG00000017542)	Col26a1 (ENSPEMG00000015760)	Ift22 (ENSPEMG00000013590) #7	Fis1 (ENSPEMG00000011161) #8	Cldn15 (ENSPEMG00000029730) #9	Znhit1 (ENSPEMG00000002806) #10	Plod3 (ENSPEMG00000000016) #11	ENSPEMG00000026689 ##12	ENSPEMG00000024566 #12	Vgf (ENSPEMG00000017554) #14	Ap1s1 (ENSPEMG00000016550) #15	Serpine1 (ENSPEMG00000015527) #16	Trim56 (ENSPEMG00000027942) #17	ENSPEMG00000014470 #18	Muc3a (ENSPEMG00000012889) #20	Ache (ENSPEMG00000012349) #22	Ufsp1 (ENSPEMG00000014023) #24	Srrt (ENSPEMG00000010834) #23	Trip6 (ENSPEMG00000009489) #25	Slc12a9 (ENSPEMG00000008133) #26	Ephb4 (ENSPEMG00000003881) #27	Zan (ENSPEMG00000016734) #28	Epo (ENSPEMG00000011939) #29	Pop7 (ENSPEMG00000011583) #30	Gigyf1 (ENSPEMG00000008611) #31	Gnb2 (ENSPEMG00000007981) #32	Actl6b (ENSPEMG00000006769) #33	Tfr2 (ENSPEMG00000001392) #34	Mospd3 (ENSPEMG00000000348) #35	Pcolce (ENSPEMG00000000057) #36	Fbxo24 (ENSPEMG00000017456) #37
Prairie vole	MODERN SPECIES	192																Ache (ENSMOCG00000013374) #22	Ufsp1 (ENSMOCG00000019956) #24	Srrt (ENSMOCG00000001971) #23	Trip6 (ENSMOCG00000003473) #25	Slc12a9 (ENSMOCG00000014835) #26	Ephb4 (ENSMOCG00000009224) #27	Zan (ENSMOCG00000018444) #28	Epo (ENSMOCG00000011118) #29	Pop7 (ENSMOCG00000013694) #30	Gigyf1 (ENSMOCG00000002516) #31	Gnb2 (ENSMOCG00000018267) #32	Actl6b (ENSMOCG00000007386) #33	Tfr2 (ENSMOCG00000002423) #34	Mospd3 (ENSMOCG00000002893) #35	ENSMOCG00000017218 #36	Fbxo24 (ENSMOCG00000015611) #37
Cricetinae	ANCESTRAL SPECIES	27	ENSGT00390000005003	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Chinese hamster chok1gshd	MODERN SPECIES	202	Orai2 (ENSCGRG00001016281)	Sh2b2 (ENSCGRG00001023493)	Cux1 (ENSCGRG00001022360)	Myl10 (ENSCGRG00001015932)	Col26a1 (ENSCGRG00001004901)	Ift22 (ENSCGRG00001021179) #7	Fis1 (ENSCGRG00001000122) #8	Cldn15 (ENSCGRG00001003882) #9	ENSCGRG00001018394 #10	Plod3 (ENSCGRG00001017088) #11	ENSCGRG00001008089	Vgf (ENSCGRG00001004872) #14	Ap1s1 (ENSCGRG00001015982) #15	Serpine1 (ENSCGRG00001012996) #16	ENSCGRG00001023911 #18	Ache (ENSCGRG00001000791) #22	Srrt (ENSCGRG00001001594) #23	Ufsp1 (ENSCGRG00001008098) #24	Trip6 (ENSCGRG00001019048) #25	Slc12a9 (ENSCGRG00001004531) #26	Ephb4 (ENSCGRG00001021237) #27	Zan (ENSCGRG00001000780) #28	Epo (ENSCGRG00001019638) #29	Pop7 (ENSCGRG00001010593) #30	Gigyf1 (ENSCGRG00001004356) #31	Gnb2 (ENSCGRG00001017627) #32	Actl6b (ENSCGRG00001023904) #33	Tfr2 (ENSCGRG00001018636) #34	Mospd3 (ENSCGRG00001015885) #35	Pcolce (ENSCGRG00001023242) #36	Fbxo24 (ENSCGRG00001013663) #37
Golden Hamster	MODERN SPECIES	715	Lrwd1 (ENSMAUG00000009363)	Alkbh4 (ENSMAUG00000005177)	Orai2 (ENSMAUG00000008449)	Prkrip1 (ENSMAUG00000013686)	Sh2b2 (ENSMAUG00000014541)	Cux1 (ENSMAUG00000022066)	Col26a1 (ENSMAUG00000004879)	ENSMAUG00000009788 #8	Cldn15 (ENSMAUG00000020094) #9	Znhit1 (ENSMAUG00000001325) #10	Plod3 (ENSMAUG00000014281) #11	Vgf (ENSMAUG00000016152) #14	Serpine1 (ENSMAUG00000002717) #16	Trim56 (ENSMAUG00000012814) #17	ENSMAUG00000018255 #18	Ache (ENSMAUG00000021581) #22	Srrt (ENSMAUG00000011386) #23	Trip6 (ENSMAUG00000014707) #25	Slc12a9 (ENSMAUG00000021467) #26	Ephb4 (ENSMAUG00000001045) #27	Zan (ENSMAUG00000003221) #28	Epo (ENSMAUG00000021556) #29	Pop7 (ENSMAUG00000015820) #30	Gigyf1 (ENSMAUG00000017322) #31	Gnb2 (ENSMAUG00000010760) #32	Actl6b (ENSMAUG00000008451) #33	Tfr2 (ENSMAUG00000007323) #34	Mospd3 (ENSMAUG00000003865) #35	ENSMAUG00000013870 #36	Fbxo24 (ENSMAUG00000013892) #37	Lrch4 (ENSMAUG00000011620)
Murinae	ANCESTRAL SPECIES	20	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Mus	ANCESTRAL SPECIES	17	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Mus_A	ANCESTRAL SPECIES	6	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Steppe mouse	MODERN SPECIES	149	ENSMSIG00000010739	ENSMSIG00000010699	Col26a1 (ENSMSIG00000010652)	Ift22 (ENSMSIG00000010604) #7	ENSMSIG00000010540 #8	Cldn15 (ENSMSIG00000010515) #9	Znhit1 (ENSMSIG00000010378) #10	Plod3 (ENSMSIG00000010309) #11	Vgf (ENSMSIG00000010286) #14	ENSMSIG00000010253 #15	Serpine1 (ENSMSIG00000010236) #16	Trim56 (ENSMSIG00000010233) #17	ENSMSIG00000010208 #18	ENSMSIG00000010154	ENSMSIG00000010135 #20	Ache (ENSMSIG00000010105) #22	Ufsp1 (ENSMSIG00000010096) #24	Srrt (ENSMSIG00000010003) #23	Trip6 (ENSMSIG00000009968) #25	Slc12a9 (ENSMSIG00000009900) #26	Ephb4 (ENSMSIG00000009713) #27	Zan (ENSMSIG00000008617) #28	Epo (ENSMSIG00000008562) #29	Pop7 (ENSMSIG00000008543) #30	Gigyf1 (ENSMSIG00000008422) #31	Gnb2 (ENSMSIG00000008390) #32	Actl6b (ENSMSIG00000008340) #33	Tfr2 (ENSMSIG00000008240) #34	ENSMSIG00000008208 #35	ENSMSIG00000008182	Pcolce (ENSMSIG00000008123) #36
spretus	MODERN SPECIES	14	Sh2b2 (MGP_SPRETEiJ_G0028858)	Cux1 (MGP_SPRETEiJ_G0028859)	Myl10 (MGP_SPRETEiJ_G0028860)	Col26a1 (MGP_SPRETEiJ_G0028861)	Ift22 (MGP_SPRETEiJ_G0028862) #7	Fis1 (MGP_SPRETEiJ_G0028863) #8	Cldn15 (MGP_SPRETEiJ_G0028864) #9	Znhit1 (MGP_SPRETEiJ_G0028865) #10	Plod3 (MGP_SPRETEiJ_G0028866) #11	Vgf (MGP_SPRETEiJ_G0028867) #14	Ap1s1 (MGP_SPRETEiJ_G0028868) #15	Serpine1 (MGP_SPRETEiJ_G0028869) #16	Trim56 (MGP_SPRETEiJ_G0028870) #17	MGP_SPRETEiJ_G0028871 #18	Muc3a (MGP_SPRETEiJ_G0028872) #20	Ache (MGP_SPRETEiJ_G0028873) #22	Ufsp1 (MGP_SPRETEiJ_G0028874) #24	Srrt (MGP_SPRETEiJ_G0028875) #23	Trip6 (MGP_SPRETEiJ_G0028876) #25	Slc12a9 (MGP_SPRETEiJ_G0028877) #26	Ephb4 (MGP_SPRETEiJ_G0028878) #27	Zan (MGP_SPRETEiJ_G0028879) #28	Epo (MGP_SPRETEiJ_G0028880) #29	Pop7 (MGP_SPRETEiJ_G0028881) #30	MGP_SPRETEiJ_G0028882 #31	Gnb2 (MGP_SPRETEiJ_G0028883) #32	Actl6b (MGP_SPRETEiJ_G0028884) #33	Tfr2 (MGP_SPRETEiJ_G0028885) #34	Mospd3 (MGP_SPRETEiJ_G0028886) #35	Pcolce (MGP_SPRETEiJ_G0028887) #36	Fbxo24 (MGP_SPRETEiJ_G0028888) #37
Mouse	MODERN SPECIES	14	Cux1 (ENSMUSG00000029705)	Myl10 (ENSMUSG00000005474)	Col26a1 (ENSMUSG00000004415)	Ift22 (ENSMUSG00000007987) #7	Fis1 (ENSMUSG00000019054) #8	Cldn15 (ENSMUSG00000001739) #9	Znhit1 (ENSMUSG00000059518) #10	Plod3 (ENSMUSG00000004846) #11	Vgf (ENSMUSG00000037428) #14	Ap1s1 (ENSMUSG00000004849) #15	Serpine1 (ENSMUSG00000037411) #16	Trim56 (ENSMUSG00000043279) #17	Muc3 (ENSMUSG00000037390) #18	Gm31160 (ENSMUSG00000118522) #18	Muc3a (ENSMUSG00000094840) #20	Ache (ENSMUSG00000023328) #22	Ufsp1 (ENSMUSG00000051502) #24	Srrt (ENSMUSG00000037364) #23	Trip6 (ENSMUSG00000023348) #25	Slc12a9 (ENSMUSG00000037344) #26	Ephb4 (ENSMUSG00000029710) #27	Zan (ENSMUSG00000079173) #28	Epo (ENSMUSG00000029711) #29	Pop7 (ENSMUSG00000029715) #30	Gigyf1 (ENSMUSG00000029714) #31	Gnb2 (ENSMUSG00000029713) #32	Actl6b (ENSMUSG00000029712) #33	Tfr2 (ENSMUSG00000029716) #34	Mospd3 (ENSMUSG00000037221) #35	Pcolce (ENSMUSG00000029718) #36	Fbxo24 (ENSMUSG00000089984) #37
Ryukyu mouse	MODERN SPECIES	14	Alkbh4 (MGP_CAROLIEiJ_G0027853)	MGP_CAROLIEiJ_G0027854	MGP_CAROLIEiJ_G0027855	Sh2b2 (MGP_CAROLIEiJ_G0027856)	MGP_CAROLIEiJ_G0027857	MGP_CAROLIEiJ_G0027858	MGP_CAROLIEiJ_G0027859	MGP_CAROLIEiJ_G0027860 #7	Fis1 (MGP_CAROLIEiJ_G0027861) #8	MGP_CAROLIEiJ_G0027862	Plod3 (MGP_CAROLIEiJ_G0027863) #11	Vgf (MGP_CAROLIEiJ_G0027864) #14	MGP_CAROLIEiJ_G0027865 #15	Trim56 (MGP_CAROLIEiJ_G0027866) #17	MGP_CAROLIEiJ_G0027867 #20	Ache (MGP_CAROLIEiJ_G0027868) #22	Ufsp1 (MGP_CAROLIEiJ_G0027869) #24	Srrt (MGP_CAROLIEiJ_G0027870) #23	Trip6 (MGP_CAROLIEiJ_G0027871) #25	Slc12a9 (MGP_CAROLIEiJ_G0027872) #26	Ephb4 (MGP_CAROLIEiJ_G0027873) #27	Zan (MGP_CAROLIEiJ_G0027874) #28	Epo (MGP_CAROLIEiJ_G0027875) #29	Pop7 (MGP_CAROLIEiJ_G0027876) #30	MGP_CAROLIEiJ_G0027877 #31	Gnb2 (MGP_CAROLIEiJ_G0027878) #32	Actl6b (MGP_CAROLIEiJ_G0027879) #33	Tfr2 (MGP_CAROLIEiJ_G0027880) #34	Mospd3 (MGP_CAROLIEiJ_G0027881) #35	Pcolce (MGP_CAROLIEiJ_G0027882) #36	Fbxo24 (MGP_CAROLIEiJ_G0027883) #37
Shrew mouse	MODERN SPECIES	15	MGP_PahariEiJ_G0024439	Cux1 (MGP_PahariEiJ_G0024440)	Myl10 (MGP_PahariEiJ_G0024441)	Col26a1 (MGP_PahariEiJ_G0024442)	Ift22 (MGP_PahariEiJ_G0024443) #7	Fis1 (MGP_PahariEiJ_G0024444) #8	Cldn15 (MGP_PahariEiJ_G0024445) #9	Znhit1 (MGP_PahariEiJ_G0024446) #10	Plod3 (MGP_PahariEiJ_G0024447) #11	Vgf (MGP_PahariEiJ_G0024448) #14	MGP_PahariEiJ_G0024449 #15	Serpine1 (MGP_PahariEiJ_G0024450) #16	Trim56 (MGP_PahariEiJ_G0024451) #17	MGP_PahariEiJ_G0024452 #18	Muc3a (MGP_PahariEiJ_G0024453) #20	Ache (MGP_PahariEiJ_G0024454) #22	Ufsp1 (MGP_PahariEiJ_G0024455) #24	Srrt (MGP_PahariEiJ_G0024456) #23	Trip6 (MGP_PahariEiJ_G0024457) #25	Slc12a9 (MGP_PahariEiJ_G0024458) #26	Ephb4 (MGP_PahariEiJ_G0024459) #27	Epo (MGP_PahariEiJ_G0024461) #29	Pop7 (MGP_PahariEiJ_G0024462) #30	MGP_PahariEiJ_G0024463 #31	Gnb2 (MGP_PahariEiJ_G0024464) #32	MGP_PahariEiJ_G0024465 #33	MGP_PahariEiJ_G0024467 #36	MGP_PahariEiJ_G0024468	Nyap1 (MGP_PahariEiJ_G0024469)	MGP_PahariEiJ_G0024470	MGP_PahariEiJ_G0024471
Rat	MODERN SPECIES	3	Cux1 (ENSRNOG00000001424)	Myl10 (ENSRNOG00000028981)	Col26a1 (ENSRNOG00000001422)	Ift22 (ENSRNOG00000031346) #7	Fis1 (ENSRNOG00000001420) #8	Cldn15 (ENSRNOG00000001419) #9	Znhit1 (ENSRNOG00000001418) #10	Plod3 (ENSRNOG00000001417) #11	Mogat3 (ENSRNOG00000029211) ##12	Vgf (ENSRNOG00000001416) #14	Ap1s1 (ENSRNOG00000001415) #15	Serpine1 (ENSRNOG00000001414) #16	Trim56 (ENSRNOG00000071001) #17	ENSRNOG00000070500 #18	Muc3a (ENSRNOG00000068186) #20	Ache (ENSRNOG00000050841) #22	Srrt (ENSRNOG00000048277) #23	Trip6 (ENSRNOG00000048580) #25	Slc12a9 (ENSRNOG00000048487) #26	Ephb4 (ENSRNOG00000045952) #27	Zan (ENSRNOG00000067638) #28	Epo (ENSRNOG00000001412) #29	Pop7 (ENSRNOG00000025310) #30	Gigyf1 (ENSRNOG00000001410) #31	Gnb2 (ENSRNOG00000001409) #32	Actl6b (ENSRNOG00000001408) #33	Tfr2 (ENSRNOG00000001407) #34	Mospd3 (ENSRNOG00000001396) #35	Pcolce (ENSRNOG00000025001) #36	Fbxo24 (ENSRNOG00000024922) #37	Lrch4 (ENSRNOG00000001402)
Upper Galilee mountains blind mole rat	MODERN SPECIES	779	ENSNGAG00000018777	ENSNGAG00000021445	ENSNGAG00000023111	Myl10 (ENSNGAG00000023559)	Col26a1 (ENSNGAG00000006906)	Ift22 (ENSNGAG00000023459) #7	Cldn15 (ENSNGAG00000003494) #9	Znhit1 (ENSNGAG00000023520) #10	Plod3 (ENSNGAG00000018568) #11	Vgf (ENSNGAG00000013648) #14	ENSNGAG00000004650 #15	Serpine1 (ENSNGAG00000013020) #16	Trim56 (ENSNGAG00000013564) #17	ENSNGAG00000003056 #18	ENSNGAG00000011323 #20	Ache (ENSNGAG00000007886) #22	Srrt (ENSNGAG00000023715) #23	Trip6 (ENSNGAG00000021180) #25	Slc12a9 (ENSNGAG00000010253) #26	Ephb4 (ENSNGAG00000018259) #27	ENSNGAG00000010261 #28	Epo (ENSNGAG00000019436) #29	Pop7 (ENSNGAG00000021630) #30	Gigyf1 (ENSNGAG00000015108) #31	Gnb2 (ENSNGAG00000021433) #32	Actl6b (ENSNGAG00000022489) #33	Tfr2 (ENSNGAG00000011356) #34	ENSNGAG00000014033	ENSNGAG00000015360 #36	Fbxo24 (ENSNGAG00000023515) #37	Lrch4 (ENSNGAG00000002133)
Kangaroo rat	MODERN SPECIES	462	Prkrip1 (ENSDORG00000005929)	Sh2b2 (ENSDORG00000005927)	Cux1 (ENSDORG00000005924)	Myl10 (ENSDORG00000008118)	Col26a1 (ENSDORG00000004325)	Ift22 (ENSDORG00000008294) #7	Fis1 (ENSDORG00000001827) #8	Cldn15 (ENSDORG00000001824) #9	Znhit1 (ENSDORG00000001823) #10	Plod3 (ENSDORG00000001814) #11	Vgf (ENSDORG00000011809) #14	Ap1s1 (ENSDORG00000011811) #15	Serpine1 (ENSDORG00000010755) #16	Trim56 (ENSDORG00000016641) #17	ENSDORG00000024204 #18	Ache (ENSDORG00000005591) #22	Srrt (ENSDORG00000005584) #23	Trip6 (ENSDORG00000005582) #25	Slc12a9 (ENSDORG00000005580) #26	Ephb4 (ENSDORG00000007887) #27	Epo (ENSDORG00000014792) #29	Pop7 (ENSDORG00000012512) #30	Gigyf1 (ENSDORG00000016513) #31	Gnb2 (ENSDORG00000028163) #32	Actl6b (ENSDORG00000002281) #33	Tfr2 (ENSDORG00000002261) #34	ENSDORG00000029885	Pcolce (ENSDORG00000000850) #36	Fbxo24 (ENSDORG00000000848) #37	Lrch4 (ENSDORG00000000846)	Agfg2 (ENSDORG00000000836)
Laurasiatheria	ANCESTRAL SPECIES	10	ENSGT00940000170602	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Laurasiatheria_a	ANCESTRAL SPECIES	12	ENSGT00940000170602	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Artiodactyla	ANCESTRAL SPECIES	10	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000170602	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Suina	ANCESTRAL SPECIES	31	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000170602	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Pig	MODERN SPECIES	11	SH2B2 (ENSSSCG00000007682)	CUX1 (ENSSSCG00000007681)	MYL10 (ENSSSCG00000007680)	ENSSSCG00000007678	ENSSSCG00000058972	IFT22 (ENSSSCG00000054316) #7	FIS1 (ENSSSCG00000038938) #8	CLDN15 (ENSSSCG00000038901) #9	ZNHIT1 (ENSSSCG00000033982) #10	PLOD3 (ENSSSCG00000028879) #11	ENSSSCG00000030709 ##12	VGF (ENSSSCG00000039053) #14	AP1S1 (ENSSSCG00000021145) #15	SERPINE1 (ENSSSCG00000025698) #16	TRIM56 (ENSSSCG00000034347) #17	ACHE (ENSSSCG00000030303) #22	UFSP1 (ENSSSCG00000041835) #24	SRRT (ENSSSCG00000024789) #23	TRIP6 (ENSSSCG00000027486) #25	SLC12A9 (ENSSSCG00000023619) #26	EPHB4 (ENSSSCG00000007675) #27	ZAN (ENSSSCG00000007674) #28	EPO (ENSSSCG00000007673) #29	POP7 (ENSSSCG00000007672) #30	GIGYF1 (ENSSSCG00000007668) #31	GNB2 (ENSSSCG00000007669) #32	TFR2 (ENSSSCG00000007671) #34	MOSPD3 (ENSSSCG00000023255) #35	PCOLCE (ENSSSCG00000027466) #36	FBXO24 (ENSSSCG00000025096) #37	LRCH4 (ENSSSCG00000007667)
Chacoan peccary	MODERN SPECIES	893	SH2B2 (ENSCWAG00000014771)	ENSCWAG00000014972	ENSCWAG00000015282	MYL10 (ENSCWAG00000015316)	COL26A1 (ENSCWAG00000015385)	IFT22 (ENSCWAG00000015453) #7	FIS1 (ENSCWAG00000015573) #8	CLDN15 (ENSCWAG00000015695) #9	ZNHIT1 (ENSCWAG00000015771) #10	PLOD3 (ENSCWAG00000015814) #11	MOGAT3 (ENSCWAG00000015902) #12	VGF (ENSCWAG00000015964) #14	ENSCWAG00000015976 #15	SERPINE1 (ENSCWAG00000016029) #16	TRIM56 (ENSCWAG00000016111) #17	ACHE (ENSCWAG00000016128) #22	UFSP1 (ENSCWAG00000016200) #24	SRRT (ENSCWAG00000016215) #23	TRIP6 (ENSCWAG00000016286) #25	SLC12A9 (ENSCWAG00000016351) #26	EPHB4 (ENSCWAG00000016441) #27	EPO (ENSCWAG00000017049) #29	POP7 (ENSCWAG00000017082) #30	GIGYF1 (ENSCWAG00000017101) #31	GNB2 (ENSCWAG00000017140) #32	ACTL6B (ENSCWAG00000017193) #33	TFR2 (ENSCWAG00000017281) #34	MOSPD3 (ENSCWAG00000011636) #35	PCOLCE (ENSCWAG00000011681) #36	FBXO24 (ENSCWAG00000011733) #37	LRCH4 (ENSCWAG00000012434)
Artiodactyla_a	ANCESTRAL SPECIES	10	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Camelidae	ANCESTRAL SPECIES	24	ENSGT00390000005003	ENSGT00950000183191.a.b	ENSGT00940000163742	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Arabian camel	MODERN SPECIES	9	SH2B2 (ENSCDRG00005008869)	ENSCDRG00005009413	MYL10 (ENSCDRG00005013332)	COL26A1 (ENSCDRG00005013421)	IFT22 (ENSCDRG00005013659) #7	FIS1 (ENSCDRG00005013767) #8	CLDN15 (ENSCDRG00005013908) #9	ZNHIT1 (ENSCDRG00005013987) #10	PLOD3 (ENSCDRG00005014592) #11	MOGAT3 (ENSCDRG00005014712) #12	ENSCDRG00005014759	VGF (ENSCDRG00005014790) #14	AP1S1 (ENSCDRG00005014828) #15	SERPINE1 (ENSCDRG00005014882) #16	TRIM56 (ENSCDRG00005014926) #17	ACHE (ENSCDRG00005014935) #22	UFSP1 (ENSCDRG00005014985) #24	SRRT (ENSCDRG00005015004) #23	TRIP6 (ENSCDRG00005015128) #25	SLC12A9 (ENSCDRG00005015165) #26	EPHB4 (ENSCDRG00005015268) #27	ZAN (ENSCDRG00005015373) #28	EPO (ENSCDRG00005015667) #29	ENSCDRG00005015691 #30	GIGYF1 (ENSCDRG00005015711) #31	GNB2 (ENSCDRG00005015892) #32	ACTL6B (ENSCDRG00005015978) #33	TFR2 (ENSCDRG00005016028) #34	ENSCDRG00005016103 #35	PCOLCE (ENSCDRG00005016189) #36	FBXO24 (ENSCDRG00005016285) #37
Alpaca	MODERN SPECIES	3061																ACHE (ENSVPAG00000001442) #22
Artiodactyla_b	ANCESTRAL SPECIES	9	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Pecora	ANCESTRAL SPECIES	10	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g.e.b #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Yarkand deer	MODERN SPECIES	1	SH2B2 (ENSCHYG00000011645)	CUX1 (ENSCHYG00000011886)	MYL10 (ENSCHYG00000012904)	COL26A1 (ENSCHYG00000013097)	IFT22 (ENSCHYG00000013140) #7	FIS1 (ENSCHYG00000013307) #8	CLDN15 (ENSCHYG00000013543) #9	ZNHIT1 (ENSCHYG00000013624) #10	PLOD3 (ENSCHYG00000013702) #11	ENSCHYG00000014086 #12	ENSCHYG00000014414 #12	VGF (ENSCHYG00000014598) #14	AP1S1 (ENSCHYG00000014618) #15	SERPINE1 (ENSCHYG00000014707) #16	TRIM56 (ENSCHYG00000014863) #17	ACHE (ENSCHYG00000014884) #22	UFSP1 (ENSCHYG00000015010) #24	SRRT (ENSCHYG00000015050) #23	TRIP6 (ENSCHYG00000015241) #25	SLC12A9 (ENSCHYG00000015360) #26	EPHB4 (ENSCHYG00000016103) #27	ZAN (ENSCHYG00000016529) #28	EPO (ENSCHYG00000017647) #29	ENSCHYG00000017703 #30	GIGYF1 (ENSCHYG00000017746) #31	GNB2 (ENSCHYG00000017840) #32	ACTL6B (ENSCHYG00000017969) #33	TFR2 (ENSCHYG00000018217) #34	MOSPD3 (ENSCHYG00000018594) #35	PCOLCE (ENSCHYG00000018870) #36	LRCH4 (ENSCHYG00000019028)
Percora_a	ANCESTRAL SPECIES	9	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g.e.b #12	ENSGT01030000234582.f.b.g.e.a #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Siberian musk deer	MODERN SPECIES	1230																ACHE (ENSMMSG00000011195) #22	UFSP1 (ENSMMSG00000011247) #24	SRRT (ENSMMSG00000011257) #23	TRIP6 (ENSMMSG00000011338) #25	SLC12A9 (ENSMMSG00000011394) #26	EPHB4 (ENSMMSG00000011464) #27	ZAN (ENSMMSG00000011569) #28	EPO (ENSMMSG00000011707) #29	ENSMMSG00000011740 #30	GIGYF1 (ENSMMSG00000011767) #31	GNB2 (ENSMMSG00000011898) #32	ACTL6B (ENSMMSG00000011987) #33	TFR2 (ENSMMSG00000012054) #34	MOSPD3 (ENSMMSG00000012226) #35	PCOLCE (ENSMMSG00000012258) #36	FBXO24 (ENSMMSG00000012320) #37
Bovidae	ANCESTRAL SPECIES	11	ENSGT00940000163742	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187.a #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g.e.b #12	ENSGT01030000234582.f.b.g.e.a #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Caprinae	ANCESTRAL SPECIES	7	ENSGT00390000005003.k.a	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187.a #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g.e.b #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Goat	MODERN SPECIES	17	ORAI2 (ENSCHIG00000010053)	PRKRIP1 (ENSCHIG00000023221)	SH2B2 (ENSCHIG00000015376)	CUX1 (ENSCHIG00000009047)	MYL10 (ENSCHIG00000024911)	COL26A1 (ENSCHIG00000007308)	ENSCHIG00000009395 #7	FIS1 (ENSCHIG00000022425) #8	CLDN15 (ENSCHIG00000026765) #9	ZNHIT1 (ENSCHIG00000011496) #10	PLOD3 (ENSCHIG00000015476) #11	ENSCHIG00000012088 #12	AP1S1 (ENSCHIG00000011172) #15	SERPINE1 (ENSCHIG00000020858) #16	TRIM56 (ENSCHIG00000016250) #17	ACHE (ENSCHIG00000019677) #22	UFSP1 (ENSCHIG00000019868) #24	SRRT (ENSCHIG00000010495) #23	TRIP6 (ENSCHIG00000013618) #25	SLC12A9 (ENSCHIG00000026898) #26	EPHB4 (ENSCHIG00000021646) #27	ZAN (ENSCHIG00000012391) #28	EPO (ENSCHIG00000025561) #29	POP7 (ENSCHIG00000013484) #30	GIGYF1 (ENSCHIG00000010270) #31	GNB2 (ENSCHIG00000002627) #32	ACTL6B (ENSCHIG00000017510) #33	TFR2 (ENSCHIG00000012827) #34	MOSPD3 (ENSCHIG00000012056) #35	PCOLCE (ENSCHIG00000013691) #36	FBXO24 (ENSCHIG00000025122) #37
Rambouillet Sheep	MODERN SPECIES	16	SH2B2 (ENSOARG00020024254)	CUX1 (ENSOARG00020024286)	MYL10 (ENSOARG00020024505)	COL26A1 (ENSOARG00020024535)	IFT22 (ENSOARG00020024586) #7	FIS1 (ENSOARG00020024624) #8	CLDN15 (ENSOARG00020024699) #9	ZNHIT1 (ENSOARG00020024718) #10	PLOD3 (ENSOARG00020024738) #11	ENSOARG00020024797 #12	ENSOARG00020024830 #12	VGF (ENSOARG00020024849) #14	AP1S1 (ENSOARG00020024852) #15	SERPINE1 (ENSOARG00020014613) #16	TRIM56 (ENSOARG00020014642) #17	ACHE (ENSOARG00020014666) #22	UFSP1 (ENSOARG00020014801) #24	SRRT (ENSOARG00020014822) #23	TRIP6 (ENSOARG00020015033) #25	SLC12A9 (ENSOARG00020015090) #26	EPHB4 (ENSOARG00020015203) #27	EPO (ENSOARG00020016587) #29	POP7 (ENSOARG00020016637) #30	GIGYF1 (ENSOARG00020016668) #31	GNB2 (ENSOARG00020016806) #32	ACTL6B (ENSOARG00020016875) #33	TFR2 (ENSOARG00020017013) #34	MOSPD3 (ENSOARG00020017196) #35	PCOLCE (ENSOARG00020017218) #36	FBXO24 (ENSOARG00020017278) #37	LRCH4 (ENSOARG00020017539)
Bovinae	ANCESTRAL SPECIES	7	ENSGT00940000163742	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187.a #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g.e.b #12	ENSGT01030000234582.f.b.g.e.a #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
American bison	MODERN SPECIES	3016																ACHE (ENSBBBG00000022341) #22	UFSP1 (ENSBBBG00000022344) #24	SRRT (ENSBBBG00000022394) #23	SLC12A9 (ENSBBBG00000022498) #26	EPHB4 (ENSBBBG00000022706) #27	ZAN (ENSBBBG00000022771) #28	EPO (ENSBBBG00000008677) #29	POP7 (ENSBBBG00000022794) #30	GIGYF1 (ENSBBBG00000022910) #31	GNB2 (ENSBBBG00000022955) #32	ACTL6B (ENSBBBG00000022970) #33	TFR2 (ENSBBBG00000022992) #34	ENSBBBG00000022998	PCOLCE (ENSBBBG00000023061) #36	FBXO24 (ENSBBBG00000023094) #37	ENSBBBG00000023107
Bos	ANCESTRAL SPECIES	9	ENSGT00940000163742	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187.a #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g.e.b #12	ENSGT01030000234582.f.b.g.e.a #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b.c.a #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Bos_b	ANCESTRAL SPECIES	6	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187.a #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g.e.b #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b.c.a #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Hybrid Bos Indicus	MODERN SPECIES	17	SH2B2 (ENSBIXG00005000581)	CUX1 (ENSBIXG00005011168)	ENSBIXG00005001056	COL26A1 (ENSBIXG00005011266)	ENSBIXG00005011315 #7	FIS1 (ENSBIXG00005011335) #8	CLDN15 (ENSBIXG00005011355) #9	ZNHIT1 (ENSBIXG00005011379) #10	PLOD3 (ENSBIXG00005001100) #11	MOGAT3 (ENSBIXG00005000468) #12	VGF (ENSBIXG00005011486) #14	AP1S1 (ENSBIXG00005011546) #15	SERPINE1 (ENSBIXG00005011589) #16	TRIM56 (ENSBIXG00005011606) #17	ENSBIXG00005001149 #18	ACHE (ENSBIXG00005006209) #22	UFSP1 (ENSBIXG00005011784) #24	SRRT (ENSBIXG00005011813) #23	ENSBIXG00005011857 #25	SLC12A9 (ENSBIXG00005001200) #26	EPHB4 (ENSBIXG00005011964) #27	ZAN (ENSBIXG00005012092) #28	EPO (ENSBIXG00005012127) #29	ENSBIXG00005012156 #30	GIGYF1 (ENSBIXG00005012231) #31	GNB2 (ENSBIXG00005012283) #32	ACTL6B (ENSBIXG00005000378) #33	TFR2 (ENSBIXG00005000351) #34	MOSPD3 (ENSBIXG00005012435) #35	PCOLCE (ENSBIXG00005001342) #36	FBXO24 (ENSBIXG00005005700) #37
Cow	MODERN SPECIES	17	PRKRIP1 (ENSBTAG00000004106)	ENSBTAG00000047266	SH2B2 (ENSBTAG00000009691)	CUX1 (ENSBTAG00000010659)	MYL10 (ENSBTAG00000026273)	COL26A1 (ENSBTAG00000011818)	IFT22 (ENSBTAG00000014343)	FIS1 (ENSBTAG00000007900) #8	CLDN15 (ENSBTAG00000000345) #9	ZNHIT1 (ENSBTAG00000000343) #10	PLOD3 (ENSBTAG00000000342) #11	MOGAT3 (ENSBTAG00000047808) #12	VGF (ENSBTAG00000009868) #14	AP1S1 (ENSBTAG00000014468) #15	SERPINE1 (ENSBTAG00000014465) #16	ACHE (ENSBTAG00000001139) #22	SRRT (ENSBTAG00000001134) #23	UFSP1 (ENSBTAG00000050087) #24	TRIP6 (ENSBTAG00000024772) #25	SLC12A9 (ENSBTAG00000001131) #26	EPHB4 (ENSBTAG00000003446) #27	ZAN (ENSBTAG00000003432) #28	EPO (ENSBTAG00000003430) #29	POP7 (ENSBTAG00000026248) #30	GIGYF1 (ENSBTAG00000015738) #31	GNB2 (ENSBTAG00000006495) #32	ACTL6B (ENSBTAG00000008295) #33	TFR2 (ENSBTAG00000011738) #34	MOSPD3 (ENSBTAG00000026246) #35	PCOLCE (ENSBTAG00000020528) #36	FBXO24 (ENSBTAG00000003169) #37
Bos_a	ANCESTRAL SPECIES	35																ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b.c.a #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Domestic yak	MODERN SPECIES	18																ACHE (ENSBGRG00000018236) #22	SRRT (ENSBGRG00000018324) #23	UFSP1 (ENSBGRG00000018470) #24	TRIP6 (ENSBGRG00000018487) #25	SLC12A9 (ENSBGRG00000018568) #26	EPHB4 (ENSBGRG00000018737) #27	ZAN (ENSBGRG00000019021) #28	EPO (ENSBGRG00000019517) #29	POP7 (ENSBGRG00000019634) #30	GIGYF1 (ENSBGRG00000019659) #31	GNB2 (ENSBGRG00000019977) #32	ACTL6B (ENSBGRG00000020030) #33	TFR2 (ENSBGRG00000020201) #34	MOSPD3 (ENSBGRG00000020361) #35	PCOLCE (ENSBGRG00000020493) #36	FBXO24 (ENSBGRG00000020581) #37
Wild yak	MODERN SPECIES	2769																ACHE (ENSBMUG00000018634) #22	UFSP1 (ENSBMUG00000018611) #24	SRRT (ENSBMUG00000018572) #23	TRIP6 (ENSBMUG00000018542) #25	SLC12A9 (ENSBMUG00000018513) #26	EPHB4 (ENSBMUG00000018474) #27	ZAN (ENSBMUG00000018437) #28	EPO (ENSBMUG00000018404) #29	POP7 (ENSBMUG00000018399) #30	ENSBMUG00000018390 #31
Cetacea	ANCESTRAL SPECIES	3	ENSGT00950000183191.a.b	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Blue whale	MODERN SPECIES	6	SH2B2 (ENSBMSG00010010465)	ENSBMSG00010010523	ENSBMSG00010010626	MYL10 (ENSBMSG00010010636)	COL26A1 (ENSBMSG00010010656)	ENSBMSG00010010687	IFT22 (ENSBMSG00010010699) #7	FIS1 (ENSBMSG00010010724) #8	CLDN15 (ENSBMSG00010010748) #9	ZNHIT1 (ENSBMSG00010010767) #10	PLOD3 (ENSBMSG00010010787) #11	VGF (ENSBMSG00010010840) #14	AP1S1 (ENSBMSG00010010846) #15	SERPINE1 (ENSBMSG00010010867) #16	TRIM56 (ENSBMSG00010010880) #17	ACHE (ENSBMSG00010010898) #22	UFSP1 (ENSBMSG00010010917) #24	SRRT (ENSBMSG00010010942) #23	TRIP6 (ENSBMSG00010010964) #25	SLC12A9 (ENSBMSG00010010981) #26	EPHB4 (ENSBMSG00010011026) #27	ZAN (ENSBMSG00010011065) #28	EPO (ENSBMSG00010011088) #29	POP7 (ENSBMSG00010011103) #30	GIGYF1 (ENSBMSG00010011122) #31	GNB2 (ENSBMSG00010011165) #32	ACTL6B (ENSBMSG00010011243) #33	TFR2 (ENSBMSG00010011270) #34	MOSPD3 (ENSBMSG00010011308) #35	PCOLCE (ENSBMSG00010011326) #36	FBXO24 (ENSBMSG00010011373) #37
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00950000183191.a.b	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Sperm whale	MODERN SPECIES	309																ACHE (ENSPCTG00005020516) #22	UFSP1 (ENSPCTG00005020576) #24	SRRT (ENSPCTG00005020586) #23	TRIP6 (ENSPCTG00005020644) #25	SLC12A9 (ENSPCTG00005020812) #26	ENSPCTG00005020877 #27
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00950000183191.a.b	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Dolphin	MODERN SPECIES	1921																ACHE (ENSTTRG00000011106) #22	SRRT (ENSTTRG00000011104) #23	TRIP6 (ENSTTRG00000011103) #25	SLC12A9 (ENSTTRG00000011101) #26	EPHB4 (ENSTTRG00000011092) #27	ZAN (ENSTTRG00000011033) #28	EPO (ENSTTRG00000011020) #29	POP7 (ENSTTRG00000011012) #30
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00950000183191.a.b	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936.a #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37	ENSGT00940000161668
Vaquita	MODERN SPECIES	6	PRKRIP1 (ENSPSNG00000006487)	SH2B2 (ENSPSNG00000006530)	CUX1 (ENSPSNG00000006665)	ENSPSNG00000006892	MYL10 (ENSPSNG00000006913)	COL26A1 (ENSPSNG00000006967)	IFT22 (ENSPSNG00000007073) #7	FIS1 (ENSPSNG00000007150) #8	ZNHIT1 (ENSPSNG00000007208) #10	PLOD3 (ENSPSNG00000007334) #11	MOGAT3 (ENSPSNG00000007379) #12	VGF (ENSPSNG00000007438) #14	AP1S1 (ENSPSNG00000007459) #15	SERPINE1 (ENSPSNG00000007516) #16	TRIM56 (ENSPSNG00000007555) #17	ACHE (ENSPSNG00000007582) #22	ENSPSNG00000007629 #24	SRRT (ENSPSNG00000007671) #23	TRIP6 (ENSPSNG00000007762) #25	SLC12A9 (ENSPSNG00000007807) #26	EPHB4 (ENSPSNG00000007900) #27	EPO (ENSPSNG00000008841) #29	POP7 (ENSPSNG00000008886) #30	ENSPSNG00000008910 #31	ACTL6B (ENSPSNG00000008982) #33	TFR2 (ENSPSNG00000009088) #34	MOSPD3 (ENSPSNG00000009213) #35	PCOLCE (ENSPSNG00000009289) #36	FBXO24 (ENSPSNG00000009440) #37	LRCH4 (ENSPSNG00000009769)	SAP25 (ENSPSNG00000009939)
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00950000183191.a.b	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936.a #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37	ENSGT00940000161668
Narwhal	MODERN SPECIES	299	ENSMMNG00015008301	SH2B2 (ENSMMNG00015008363)	CUX1 (ENSMMNG00015008423)	MYL10 (ENSMMNG00015008589)	COL26A1 (ENSMMNG00015008617)	IFT22 (ENSMMNG00015008646) #7	ENSMMNG00015008673 #8	CLDN15 (ENSMMNG00015008699) #9	ZNHIT1 (ENSMMNG00015008707) #10	PLOD3 (ENSMMNG00015008728) #11	ENSMMNG00015008762 #13	VGF (ENSMMNG00015008769) #14	AP1S1 (ENSMMNG00015008777) #15	SERPINE1 (ENSMMNG00015008788) #16	TRIM56 (ENSMMNG00015008795) #17	ACHE (ENSMMNG00015008805) #22	ENSMMNG00015008818 #24	SRRT (ENSMMNG00015008830) #23	TRIP6 (ENSMMNG00015008845) #25	SLC12A9 (ENSMMNG00015008861) #26	EPHB4 (ENSMMNG00015008898) #27	EPO (ENSMMNG00015008986) #29	POP7 (ENSMMNG00015000022) #30	GIGYF1 (ENSMMNG00015000080) #31	GNB2 (ENSMMNG00015000129) #32	ACTL6B (ENSMMNG00015000175) #33	TFR2 (ENSMMNG00015000233) #34	MOSPD3 (ENSMMNG00015000309) #35	PCOLCE (ENSMMNG00015000350) #36	FBXO24 (ENSMMNG00015000439) #37	LRCH4 (ENSMMNG00015000576)
Beluga whale	MODERN SPECIES	48	ENSDLEG00000007859	SH2B2 (ENSDLEG00000007865)	ENSDLEG00000007873	CUX1 (ENSDLEG00000007875)	MYL10 (ENSDLEG00000007881)	COL26A1 (ENSDLEG00000007885)	IFT22 (ENSDLEG00000007889) #7	FIS1 (ENSDLEG00000007892) #8	CLDN15 (ENSDLEG00000007901) #9	ENSDLEG00000007951 #10	PLOD3 (ENSDLEG00000008005) #11	VGF (ENSDLEG00000008089) #14	AP1S1 (ENSDLEG00000008112) #15	SERPINE1 (ENSDLEG00000008141) #16	TRIM56 (ENSDLEG00000008156) #17	ACHE (ENSDLEG00000008179) #22	UFSP1 (ENSDLEG00000008191) #24	SRRT (ENSDLEG00000008212) #23	TRIP6 (ENSDLEG00000008282) #25	SLC12A9 (ENSDLEG00000008367) #26	EPHB4 (ENSDLEG00000008456) #27	EPO (ENSDLEG00000008840) #29	POP7 (ENSDLEG00000008907) #30	GIGYF1 (ENSDLEG00000008935) #31	GNB2 (ENSDLEG00000009023) #32	ACTL6B (ENSDLEG00000009111) #33	TFR2 (ENSDLEG00000009208) #34	MOSPD3 (ENSDLEG00000009349) #35	PCOLCE (ENSDLEG00000009361) #36	FBXO24 (ENSDLEG00000009408) #37	LRCH4 (ENSDLEG00000009438)
Laurasiatheria_b	ANCESTRAL SPECIES	12	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Laurasiatheria_c	ANCESTRAL SPECIES	12	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000163742	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Chiroptera	ANCESTRAL SPECIES	37	ENSGT00940000163742	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT01090000261072	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Microchiroptera	ANCESTRAL SPECIES	39	ENSGT00940000159751	ENSGT00940000163742	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT01090000261072	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Greater horseshoe bat	MODERN SPECIES	25	ENSRFEG00010006858	MYL10 (ENSRFEG00010006751)	COL26A1 (ENSRFEG00010006676)	IFT22 (ENSRFEG00010006615) #7	FIS1 (ENSRFEG00010006557) #8	CLDN15 (ENSRFEG00010006514) #9	ZNHIT1 (ENSRFEG00010006492) #10	PLOD3 (ENSRFEG00010006402) #11	ENSRFEG00010006368 ##12	NAT16 (ENSRFEG00010006283) #13	VGF (ENSRFEG00010006270) #14	AP1S1 (ENSRFEG00010006234) #15	SERPINE1 (ENSRFEG00010006196) #16	TRIM56 (ENSRFEG00010006178) #17	ENSRFEG00010006137	ACHE (ENSRFEG00010004015) #22	UFSP1 (ENSRFEG00010004001) #24	SRRT (ENSRFEG00010003984) #23	TRIP6 (ENSRFEG00010003967) #25	SLC12A9 (ENSRFEG00010003949) #26	EPHB4 (ENSRFEG00010003932) #27	EPO (ENSRFEG00010003914) #29	POP7 (ENSRFEG00010003903) #30	GIGYF1 (ENSRFEG00010003889) #31	GNB2 (ENSRFEG00010003869) #32	ACTL6B (ENSRFEG00010003834) #33	TFR2 (ENSRFEG00010003787) #34	MOSPD3 (ENSRFEG00010003767) #35	PCOLCE (ENSRFEG00010003758) #36	FBXO24 (ENSRFEG00010003722) #37	LRCH4 (ENSRFEG00010003648)
Microbat	MODERN SPECIES	937																ACHE (ENSMLUG00000029214) #22	SRRT (ENSMLUG00000009975) #23	TRIP6 (ENSMLUG00000009946) #25	SLC12A9 (ENSMLUG00000009927) #26	EPHB4 (ENSMLUG00000010142) #27	ENSMLUG00000028156 #28	EPO (ENSMLUG00000010118) #29	POP7 (ENSMLUG00000010110) #30	GIGYF1 (ENSMLUG00000006788) #31	GNB2 (ENSMLUG00000006764) #32	ACTL6B (ENSMLUG00000010076) #33	TFR2 (ENSMLUG00000010027) #34	MOSPD3 (ENSMLUG00000010017) #35	PCOLCE (ENSMLUG00000009985) #36	FBXO24 (ENSMLUG00000009958) #37	LRCH4 (ENSMLUG00000009911)
Megabat	MODERN SPECIES	3516																ACHE (ENSPVAG00000000840) #22	UFSP1 (ENSPVAG00000000838) #24	SRRT (ENSPVAG00000000834) #23
Equus	ANCESTRAL SPECIES	22	ENSGT00390000005003	ENSGT00950000183191.a.b	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Horse	MODERN SPECIES	4	SH2B2 (ENSECAG00000024201)	CUX1 (ENSECAG00000022645)	MYL10 (ENSECAG00000022094)	COL26A1 (ENSECAG00000021392)	IFT22 (ENSECAG00000019190) #7	FIS1 (ENSECAG00000013191) #8	CLDN15 (ENSECAG00000011386) #9	ZNHIT1 (ENSECAG00000007913) #10	PLOD3 (ENSECAG00000021913) #11	MOGAT3 (ENSECAG00000018371) #12	ENSECAG00000045190	VGF (ENSECAG00000018108) #14	AP1S1 (ENSECAG00000010983) #15	SERPINE1 (ENSECAG00000019781) #16	TRIM56 (ENSECAG00000019517) #17	ACHE (ENSECAG00000006898) #22	ENSECAG00000006380 #24	SRRT (ENSECAG00000012292) #23	TRIP6 (ENSECAG00000002142) #25	SLC12A9 (ENSECAG00000017955) #26	EPHB4 (ENSECAG00000010632) #27	ZAN (ENSECAG00000016429) #28	EPO (ENSECAG00000010733) #29	POP7 (ENSECAG00000010383) #30	GIGYF1 (ENSECAG00000017541) #31	GNB2 (ENSECAG00000017221) #32	ACTL6B (ENSECAG00000014917) #33	TFR2 (ENSECAG00000024726) #34	MOSPD3 (ENSECAG00000023837) #35	PCOLCE (ENSECAG00000021766) #36	FBXO24 (ENSECAG00000015517) #37
Donkey	MODERN SPECIES	5	ORAI2 (ENSEASG00005016875)	SH2B2 (ENSEASG00005016877)	CUX1 (ENSEASG00005016883)	MYL10 (ENSEASG00005016896)	COL26A1 (ENSEASG00005016899)	IFT22 (ENSEASG00005016903) #7	FIS1 (ENSEASG00005026424) #8	CLDN15 (ENSEASG00005016913) #9	ZNHIT1 (ENSEASG00005016916) #10	PLOD3 (ENSEASG00005016919) #11	MOGAT3 (ENSEASG00005016920) #12	VGF (ENSEASG00005027802) #14	ENSEASG00005016926 #15	SERPINE1 (ENSEASG00005016930) #16	TRIM56 (ENSEASG00005037715) #17	ACHE (ENSEASG00005016950) #22	SRRT (ENSEASG00005016956) #23	TRIP6 (ENSEASG00005016963) #25	SLC12A9 (ENSEASG00005016970) #26	EPHB4 (ENSEASG00005016974) #27	ZAN (ENSEASG00005016981) #28	EPO (ENSEASG00005016991) #29	POP7 (ENSEASG00005032763) #30	GIGYF1 (ENSEASG00005016996) #31	GNB2 (ENSEASG00005017004) #32	ACTL6B (ENSEASG00005017006) #33	TFR2 (ENSEASG00005017013) #34	MOSPD3 (ENSEASG00005017021) #35	PCOLCE (ENSEASG00005017024) #36	FBXO24 (ENSEASG00005017028) #37	LRCH4 (ENSEASG00005017031)
Carnivora	ANCESTRAL SPECIES	12	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Felidae	ANCESTRAL SPECIES	19	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Cat	MODERN SPECIES	247	SH2B2 (ENSFCAG00000028777)	CUX1 (ENSFCAG00000034298)	MYL10 (ENSFCAG00000018080)	COL26A1 (ENSFCAG00000008073)	IFT22 (ENSFCAG00000005806) #7	FIS1 (ENSFCAG00000018642) #8	CLDN15 (ENSFCAG00000033139) #9	ZNHIT1 (ENSFCAG00000005802) #10	PLOD3 (ENSFCAG00000005798) #11	MOGAT3 (ENSFCAG00000010725) #12	VGF (ENSFCAG00000030532) #14	AP1S1 (ENSFCAG00000034087) #15	SERPINE1 (ENSFCAG00000005795) #16	TRIM56 (ENSFCAG00000018978) #17	ENSFCAG00000052766 #18	ACHE (ENSFCAG00000023546) #22	UFSP1 (ENSFCAG00000037835) #24	SRRT (ENSFCAG00000006855) #23	TRIP6 (ENSFCAG00000006854) #25	SLC12A9 (ENSFCAG00000006853) #26	EPHB4 (ENSFCAG00000006852) #27	ZAN (ENSFCAG00000006851) #28	EPO (ENSFCAG00000006850) #29	POP7 (ENSFCAG00000006849) #30	GIGYF1 (ENSFCAG00000006848) #31	GNB2 (ENSFCAG00000023877) #32	ACTL6B (ENSFCAG00000006846) #33	TFR2 (ENSFCAG00000006845) #34	MOSPD3 (ENSFCAG00000006844) #35	PCOLCE (ENSFCAG00000006843) #36	FBXO24 (ENSFCAG00000006842) #37
Panthera	ANCESTRAL SPECIES	27	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Tiger	MODERN SPECIES	32	ORAI2 (ENSPTIG00000020867)	PRKRIP1 (ENSPTIG00000021196)	ENSPTIG00000021532	ENSPTIG00000021707	MYL10 (ENSPTIG00000006454)	ENSPTIG00000007291	IFT22 (ENSPTIG00000008758) #7	FIS1 (ENSPTIG00000009066) #8	CLDN15 (ENSPTIG00000009481) #9	ZNHIT1 (ENSPTIG00000009628) #10	PLOD3 (ENSPTIG00000009859) #11	MOGAT3 (ENSPTIG00000010531) #12	ENSPTIG00000011687 #14	AP1S1 (ENSPTIG00000012055) #15	SERPINE1 (ENSPTIG00000012367) #16	ACHE (ENSPTIG00000013081) #22	UFSP1 (ENSPTIG00000005645) #24	SRRT (ENSPTIG00000014355) #23	TRIP6 (ENSPTIG00000014845) #25	SLC12A9 (ENSPTIG00000015559) #26	EPHB4 (ENSPTIG00000017511) #27	EPO (ENSPTIG00000008214) #29	POP7 (ENSPTIG00000005807) #30	GIGYF1 (ENSPTIG00000008645) #31	GNB2 (ENSPTIG00000009832) #32	ACTL6B (ENSPTIG00000011607) #33	TFR2 (ENSPTIG00000011926) #34	MOSPD3 (ENSPTIG00000012732) #35	PCOLCE (ENSPTIG00000013565) #36	FBXO24 (ENSPTIG00000014049) #37	LRCH4 (ENSPTIG00000014734)
Panthera_a	ANCESTRAL SPECIES	27	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
lion	MODERN SPECIES	16	SH2B2 (ENSPLOG00000011878)	CUX1 (ENSPLOG00000012063)	MYL10 (ENSPLOG00000012371)	COL26A1 (ENSPLOG00000012475)	IFT22 (ENSPLOG00000012741) #7	ENSPLOG00000012876 #9	ENSPLOG00000012980 #9	ZNHIT1 (ENSPLOG00000013038) #10	PLOD3 (ENSPLOG00000013188) #11	MOGAT3 (ENSPLOG00000013775) #12	VGF (ENSPLOG00000014185) #14	AP1S1 (ENSPLOG00000014212) #15	SERPINE1 (ENSPLOG00000014320) #16	TRIM56 (ENSPLOG00000014365) #17	ENSPLOG00000014392 #18	ACHE (ENSPLOG00000014528) #22	UFSP1 (ENSPLOG00000014635) #24	SRRT (ENSPLOG00000014684) #23	TRIP6 (ENSPLOG00000014782) #25	SLC12A9 (ENSPLOG00000014856) #26	EPHB4 (ENSPLOG00000015073) #27	EPO (ENSPLOG00000017157) #29	POP7 (ENSPLOG00000017212) #30	GIGYF1 (ENSPLOG00000017252) #31	GNB2 (ENSPLOG00000017453) #32	ACTL6B (ENSPLOG00000017604) #33	TFR2 (ENSPLOG00000017769) #34	MOSPD3 (ENSPLOG00000017973) #35	PCOLCE (ENSPLOG00000018092) #36	FBXO24 (ENSPLOG00000018295) #37	LRCH4 (ENSPLOG00000018576)
leopard	MODERN SPECIES	91																ACHE (ENSPPRG00000004893) #22	UFSP1 (ENSPPRG00000017880) #24	SRRT (ENSPPRG00000009557) #23	TRIP6 (ENSPPRG00000011591) #25	SLC12A9 (ENSPPRG00000013378) #26	EPHB4 (ENSPPRG00000021827) #27	ZAN (ENSPPRG00000006749) #28	EPO (ENSPPRG00000007032) #29	POP7 (ENSPPRG00000018408) #30	GIGYF1 (ENSPPRG00000007671) #31	GNB2 (ENSPPRG00000008843) #32	ACTL6B (ENSPPRG00000009571) #33	TFR2 (ENSPPRG00000010375) #34	MOSPD3 (ENSPPRG00000011173) #35	PCOLCE (ENSPPRG00000011700) #36	FBXO24 (ENSPPRG00000013715) #37
Caniformia	ANCESTRAL SPECIES	8	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Canidae	ANCESTRAL SPECIES	3	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00940000163742	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Dog	MODERN SPECIES	34	CUX1 (ENSCAFG00845004901)	MYL10 (ENSCAFG00845004981)	COL26A1 (ENSCAFG00845005019)	IFT22 (ENSCAFG00845005038) #7	FIS1 (ENSCAFG00845005056) #8	CLDN15 (ENSCAFG00845005082) #9	ZNHIT1 (ENSCAFG00845005102) #10	PLOD3 (ENSCAFG00845005125) #11	MOGAT3 (ENSCAFG00845000519) #12	VGF (ENSCAFG00845000561) #14	AP1S1 (ENSCAFG00845000579) #15	SERPINE1 (ENSCAFG00845000607) #16	TRIM56 (ENSCAFG00845000631) #17	ENSCAFG00845000644	ENSCAFG00845000663	ACHE (ENSCAFG00845000697) #22	SRRT (ENSCAFG00845000736) #23	TRIP6 (ENSCAFG00845000757) #25	SLC12A9 (ENSCAFG00845000776) #26	EPHB4 (ENSCAFG00845000816) #27	ZAN (ENSCAFG00845000904) #28	EPO (ENSCAFG00845001075) #29	POP7 (ENSCAFG00845001100) #30	GIGYF1 (ENSCAFG00845001154) #31	GNB2 (ENSCAFG00845001262) #32	ACTL6B (ENSCAFG00845001299) #33	TFR2 (ENSCAFG00845001347) #34	MOSPD3 (ENSCAFG00845001385) #35	PCOLCE (ENSCAFG00845001417) #36	FBXO24 (ENSCAFG00845001486) #37	LRCH4 (ENSCAFG00845001581)
Dingo	MODERN SPECIES	351	SH2B2 (ENSCAFG00020013171)	ENSCAFG00020013178	ENSCAFG00020013189	MYL10 (ENSCAFG00020013198)	COL26A1 (ENSCAFG00020013213)	ENSCAFG00020013217	ENSCAFG00020013221 #8	CLDN15 (ENSCAFG00020013230) #9	ZNHIT1 (ENSCAFG00020013235) #10	PLOD3 (ENSCAFG00020013249) #11	MOGAT3 (ENSCAFG00020013261) #12	AP1S1 (ENSCAFG00020013311) #15	SERPINE1 (ENSCAFG00020013314) #16	TRIM56 (ENSCAFG00020013319) #17	ENSCAFG00020013322 #18	ACHE (ENSCAFG00020013326) #22	UFSP1 (ENSCAFG00020013330) #24	SRRT (ENSCAFG00020013358) #23	TRIP6 (ENSCAFG00020013808) #25	SLC12A9 (ENSCAFG00020013810) #26	EPHB4 (ENSCAFG00020013816) #27	EPO (ENSCAFG00020013854) #29	POP7 (ENSCAFG00020013863) #30	GIGYF1 (ENSCAFG00020013875) #31	GNB2 (ENSCAFG00020013892) #32	ACTL6B (ENSCAFG00020013896) #33	TFR2 (ENSCAFG00020013942) #34	MOSPD3 (ENSCAFG00020013956) #35	PCOLCE (ENSCAFG00020013959) #36	FBXO24 (ENSCAFG00020013963) #37	LRCH4 (ENSCAFG00020013974)
Red fox	MODERN SPECIES	164	ENSVVUG00000023688	MYL10 (ENSVVUG00000023673)	COL26A1 (ENSVVUG00000023661)	IFT22 (ENSVVUG00000023654) #7	FIS1 (ENSVVUG00000023650) #8	CLDN15 (ENSVVUG00000023633) #9	ZNHIT1 (ENSVVUG00000023627) #10	PLOD3 (ENSVVUG00000023620) #11	MOGAT3 (ENSVVUG00000023616) #12	VGF (ENSVVUG00000023612) #14	AP1S1 (ENSVVUG00000023608) #15	SERPINE1 (ENSVVUG00000023603) #16	TRIM56 (ENSVVUG00000023601) #17	ENSVVUG00000023598	ENSVVUG00000023594 #18	ACHE (ENSVVUG00000023577) #22	UFSP1 (ENSVVUG00000023576) #24	SRRT (ENSVVUG00000023572) #23	TRIP6 (ENSVVUG00000023541) #25	SLC12A9 (ENSVVUG00000023538) #26	EPHB4 (ENSVVUG00000023535) #27	ZAN (ENSVVUG00000023487) #28	EPO (ENSVVUG00000023476) #29	POP7 (ENSVVUG00000023472) #30	GIGYF1 (ENSVVUG00000023468) #31	GNB2 (ENSVVUG00000023466) #32	ACTL6B (ENSVVUG00000023465) #33	TFR2 (ENSVVUG00000023458) #34	MOSPD3 (ENSVVUG00000023456) #35	PCOLCE (ENSVVUG00000023454) #36	FBXO24 (ENSVVUG00000023446) #37
Caniformia_b	ANCESTRAL SPECIES	7	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Mustelinae	ANCESTRAL SPECIES	41	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187 #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000154419.a.b #20	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Ferret	MODERN SPECIES	243	IFT22 (ENSMPUG00000015920) #7	FIS1 (ENSMPUG00000015919) #8	CLDN15 (ENSMPUG00000015916) #9	ZNHIT1 (ENSMPUG00000015910) #10	PLOD3 (ENSMPUG00000015891) #11	MOGAT3 (ENSMPUG00000015873) #12	NAT16 (ENSMPUG00000015869) #13	VGF (ENSMPUG00000019767) #14	ENSMPUG00000015868	AP1S1 (ENSMPUG00000015867) #15	SERPINE1 (ENSMPUG00000015866) #16	TRIM56 (ENSMPUG00000019766) #17	ENSMPUG00000015859 #18	ENSMPUG00000015858	ENSMPUG00000015856 #20	ACHE (ENSMPUG00000015841) #22	SRRT (ENSMPUG00000015839) #23	SLC12A9 (ENSMPUG00000015836) #26	EPHB4 (ENSMPUG00000015832) #27	ZAN (ENSMPUG00000015761) #28	EPO (ENSMPUG00000015753) #29	POP7 (ENSMPUG00000019765) #30	GIGYF1 (ENSMPUG00000015729) #31	GNB2 (ENSMPUG00000015704) #32	ACTL6B (ENSMPUG00000015701) #33	MOSPD3 (ENSMPUG00000015698) #35	PCOLCE (ENSMPUG00000015696) #36	FBXO24 (ENSMPUG00000015687) #37	LRCH4 (ENSMPUG00000015685)	ENSMPUG00000015683	SAP25 (ENSMPUG00000015682)
American mink	MODERN SPECIES	102	SH2B2 (ENSNVIG00000002838)	CUX1 (ENSNVIG00000002028)	MYL10 (ENSNVIG00000001986)	COL26A1 (ENSNVIG00000001944)	IFT22 (ENSNVIG00000001902) #7	FIS1 (ENSNVIG00000001862) #8	CLDN15 (ENSNVIG00000001849) #9	ZNHIT1 (ENSNVIG00000001846) #10	PLOD3 (ENSNVIG00000001831) #11	MOGAT3 (ENSNVIG00000001801) #12	VGF (ENSNVIG00000001794) #14	AP1S1 (ENSNVIG00000001768) #15	SERPINE1 (ENSNVIG00000001748) #16	TRIM56 (ENSNVIG00000001742) #17	ENSNVIG00000001716 #18	ACHE (ENSNVIG00000001690) #22	UFSP1 (ENSNVIG00000001686) #24	SRRT (ENSNVIG00000001594) #23	TRIP6 (ENSNVIG00000001570) #25	ENSNVIG00000001548 #27	ZAN (ENSNVIG00000001483) #28	EPO (ENSNVIG00000001465) #29	C9JYM0 (ENSNVIG00000001460) #30	GIGYF1 (ENSNVIG00000001349) #31	GNB2 (ENSNVIG00000001316) #32	TFR2 (ENSNVIG00000001228) #34	MOSPD3 (ENSNVIG00000001204) #35	PCOLCE (ENSNVIG00000001171) #36	FBXO24 (ENSNVIG00000001085) #37	LRCH4 (ENSNVIG00000001043)	SAP25 (ENSNVIG00000000995)
Ursidae	ANCESTRAL SPECIES	3	ENSGT00940000159751	ENSGT00940000161811	ENSGT00940000161716	ENSGT00390000013187.d #7	ENSGT00390000013187.c #7	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489 #17	ENSGT00940000154419.a.a #18	ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Giant Panda	MODERN SPECIES	1	ENSAMEG00000015439	SH2B2 (ENSAMEG00000015436)	CUX1 (ENSAMEG00000015392)	MYL10 (ENSAMEG00000015356)	COL26A1 (ENSAMEG00000001702)	ENSAMEG00000026629 #7	FIS1 (ENSAMEG00000001678) #8	CLDN15 (ENSAMEG00000001670) #9	ZNHIT1 (ENSAMEG00000001658) #10	PLOD3 (ENSAMEG00000002732) #11	MOGAT3 (ENSAMEG00000002706) #12	VGF (ENSAMEG00000024439) #14	AP1S1 (ENSAMEG00000002673) #15	SERPINE1 (ENSAMEG00000002621) #16	ENSAMEG00000002584 #18	ACHE (ENSAMEG00000014489) #22	UFSP1 (ENSAMEG00000030951) #24	SRRT (ENSAMEG00000014506) #23	TRIP6 (ENSAMEG00000014537) #25	SLC12A9 (ENSAMEG00000014543) #26	EPHB4 (ENSAMEG00000014567) #27	ENSAMEG00000014680 #28	EPO (ENSAMEG00000014713) #29	POP7 (ENSAMEG00000014722) #30	GIGYF1 (ENSAMEG00000014726) #31	GNB2 (ENSAMEG00000014766) #32	ACTL6B (ENSAMEG00000014795) #33	TFR2 (ENSAMEG00000014828) #34	MOSPD3 (ENSAMEG00000014875) #35	PCOLCE (ENSAMEG00000014891) #36	FBXO24 (ENSAMEG00000014922) #37
Ursus	ANCESTRAL SPECIES	32																ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Polar bear	MODERN SPECIES	212																ACHE (ENSUMAG00000011305) #22	SRRT (ENSUMAG00000011295) #23	TRIP6 (ENSUMAG00000011291) #25	SLC12A9 (ENSUMAG00000011204) #26	EPHB4 (ENSUMAG00000010929) #27	ZAN (ENSUMAG00000010906) #28	EPO (ENSUMAG00000010898) #29	POP7 (ENSUMAG00000010895) #30	ENSUMAG00000010890 #31	GNB2 (ENSUMAG00000010850) #32	ACTL6B (ENSUMAG00000010798) #33	TFR2 (ENSUMAG00000010779) #34	MOSPD3 (ENSUMAG00000010773) #35	PCOLCE (ENSUMAG00000010768) #36	FBXO24 (ENSUMAG00000010762) #37	ENSUMAG00000010759
American black bear	MODERN SPECIES	1327																ACHE (ENSUAMG00000027995) #22	UFSP1 (ENSUAMG00000027996) #24	SRRT (ENSUAMG00000027997) #23	TRIP6 (ENSUAMG00000027998) #25	SLC12A9 (ENSUAMG00000027999) #26	EPHB4 (ENSUAMG00000028006) #27	EPO (ENSUAMG00000028075) #29	POP7 (ENSUAMG00000028076) #30	GIGYF1 (ENSUAMG00000000048) #31	GNB2 (ENSUAMG00000000113) #32	ACTL6B (ENSUAMG00000000151) #33
Eulipotyphla	ANCESTRAL SPECIES	1711																ENSGT00940000157637.b #22	ENSGT00390000005492 #23
Common shrew	MODERN SPECIES	5519																ACHE (ENSSARG00000009168) #22
Hedgehog	MODERN SPECIES	71																ACHE (ENSEEUG00000009538) #22	SRRT (ENSEEUG00000009117) #23
Atlantogenata	ANCESTRAL SPECIES	21																ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Afrotheria	ANCESTRAL SPECIES	103																ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Afrotheria_a	ANCESTRAL SPECIES	103																ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00940000156850.a.a #28	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000162123 #35	ENSGT00940000159264 #36	ENSGT00390000017455 #37
Elephant	MODERN SPECIES	111																ACHE (ENSLAFG00000007735) #22	SRRT (ENSLAFG00000007725) #23	TRIP6 (ENSLAFG00000029512) #25	SLC12A9 (ENSLAFG00000013210) #26	EPHB4 (ENSLAFG00000022144) #27	ZAN (ENSLAFG00000011248) #28	EPO (ENSLAFG00000027108) #29	POP7 (ENSLAFG00000030032) #30	GIGYF1 (ENSLAFG00000017009) #31	GNB2 (ENSLAFG00000017004) #32	ACTL6B (ENSLAFG00000031032) #33	TFR2 (ENSLAFG00000016993) #34	MOSPD3 (ENSLAFG00000016990) #35	PCOLCE (ENSLAFG00000016981) #36	FBXO24 (ENSLAFG00000028748) #37	LRCH4 (ENSLAFG00000028782)
Hyrax	MODERN SPECIES	3501																ACHE (ENSPCAG00000001746) #22	UFSP1 (ENSPCAG00000001728) #24	SRRT (ENSPCAG00000001621) #23	TRIP6 (ENSPCAG00000001586) #25	SLC12A9 (ENSPCAG00000001526) #26
Tenrec	MODERN SPECIES	6																ACHE (ENSETEG00000001951) #22
Xenarthra	ANCESTRAL SPECIES	1054																ENSGT00940000157637.b #22	ENSGT00940000162936 #24	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26
Armadillo	MODERN SPECIES	4342																ACHE (ENSDNOG00000003865) #22	UFSP1 (ENSDNOG00000032688) #24	SRRT (ENSDNOG00000003851) #23	TRIP6 (ENSDNOG00000003842) #25	SLC12A9 (ENSDNOG00000003831) #26
Marsupialia	ANCESTRAL SPECIES	22	ENSGT00950000182805.a.a.b.b	ENSGT00390000001520	ENSGT00940000160105	ENSGT00940000159295	ENSGT00950000182890.D.c.a.a.a.a.a	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00390000017745 #14	ENSGT00970000193372.a.b.a.a #15	ENSGT00970000193372.a.b.a.b #15	ENSGT00970000193372.a.b.b #15	ENSGT00940000160621 #16	ENSGT00940000157637.b #22	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000159264 #36	ENSGT00390000017455 #37	ENSGT00940000161668	ENSGT00940000163992	ENSGT00940000161071
Opossum	MODERN SPECIES	1	RNF167 (ENSMODG00000005330)	PFN1 (ENSMODG00000005299)	ENO3 (ENSMODG00000005273)	SPAG7 (ENSMODG00000005241)	CAMTA2 (ENSMODG00000005219)	ENSMODG00000005051	ENSMODG00000028171	ENSMODG00000005034 #9	ZNHIT1 (ENSMODG00000005024) #10	PLOD3 (ENSMODG00000005017) #11	MOGAT3 (ENSMODG00000004977) #12	VGF (ENSMODG00000004952) #14	ENSMODG00000004946 #15	ENSMODG00000041363	SERPINE1 (ENSMODG00000004913) #16	ACHE (ENSMODG00000004882) #22	SRRT (ENSMODG00000004862) #23	TRIP6 (ENSMODG00000004834) #25	SLC12A9 (ENSMODG00000004813) #26	EPHB4 (ENSMODG00000004739) #27	EPO (ENSMODG00000004668) #29	POP7 (ENSMODG00000023662) #30	GIGYF1 (ENSMODG00000004660) #31	GNB2 (ENSMODG00000004610) #32	ACTL6B (ENSMODG00000004598) #33	TFR2 (ENSMODG00000004581) #34	FBXO24 (ENSMODG00000004565) #37	LRCH4 (ENSMODG00000004547)	ENSMODG00000046871	AGFG2 (ENSMODG00000004515)	NYAP1 (ENSMODG00000004503)
Marsupialia_b	ANCESTRAL SPECIES	25	ENSGT00940000153664.A.a	ENSGT00950000182805.a.a.b.b	ENSGT00390000001520	ENSGT00940000160105	ENSGT00940000159295	ENSGT00950000182890.D.c.a.a.a.a.a	ENSGT00390000000592 #8	ENSGT00940000157650 #9	ENSGT00390000018426 #10	ENSGT01030000234558.A.a.a.a #11	ENSGT01030000234582.f.b.g #12	ENSGT00970000193372.a.b.b #15	ENSGT00390000017745 #14	ENSGT00970000193372.a.b.a.a #15	ENSGT00940000160621 #16	ENSGT00940000157637.b #22	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000159264 #36	ENSGT00390000017455 #37	ENSGT00940000161668	ENSGT00970000197711	ENSGT00940000161071
Diprotodontia	ANCESTRAL SPECIES	78																ENSGT00940000157637.b #22	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000159264 #36	ENSGT00390000017455 #37	ENSGT00940000161668	ENSGT00970000197711	ENSGT00940000161071
Diprotodontia_a	ANCESTRAL SPECIES	73																ENSGT00940000157637.b #22	ENSGT00390000005492 #23	ENSGT00940000154273.b #25	ENSGT00940000159400 #26	ENSGT00940000160057 #27	ENSGT00390000017226 #29	ENSGT00510000048483 #30	ENSGT00940000159845 #31	ENSGT01000000214413.b.b #32	ENSGT00940000160860 #33	ENSGT01030000234598.a.a.b #34	ENSGT00940000159264 #36	ENSGT00390000017455 #37	ENSGT00940000161668	ENSGT00970000197711	ENSGT00940000161071
koala	MODERN SPECIES	366															ENSPCIG00000005376	ACHE (ENSPCIG00000000827) #22	SRRT (ENSPCIG00000000816) #23	TRIP6 (ENSPCIG00000000802) #25	SLC12A9 (ENSPCIG00000000789) #26	EPHB4 (ENSPCIG00000000760) #27	EPO (ENSPCIG00000000534) #29	POP7 (ENSPCIG00000000517) #30	GIGYF1 (ENSPCIG00000000501) #31	GNB2 (ENSPCIG00000000484) #32	ACTL6B (ENSPCIG00000000450) #33	TFR2 (ENSPCIG00000000430) #34	PCOLCE (ENSPCIG00000000406) #36	FBXO24 (ENSPCIG00000000390) #37	LRCH4 (ENSPCIG00000000332)	ENSPCIG00000000301	AGFG2 (ENSPCIG00000000212)
Common wonbat	MODERN SPECIES	301																ACHE (ENSVURG00010001246) #22	SRRT (ENSVURG00010001135) #23	TRIP6 (ENSVURG00010001101) #25	SLC12A9 (ENSVURG00010001072) #26	EPHB4 (ENSVURG00010000827) #27	EPO (ENSVURG00010000767) #29	ENSVURG00010000736	POP7 (ENSVURG00010000728) #30	GIGYF1 (ENSVURG00010000702) #31	GNB2 (ENSVURG00010000668) #32	ACTL6B (ENSVURG00010000628) #33	TFR2 (ENSVURG00010000607) #34	PCOLCE (ENSVURG00010000578) #36	FBXO24 (ENSVURG00010000469) #37	LRCH4 (ENSVURG00010000378)	ENSVURG00010000361
Wallaby	MODERN SPECIES	8437																ENSMEUG00000005492 #22
Tasmanian devil	MODERN SPECIES	3	CHRNE (ENSSHAG00000005202)	ENSSHAG00000005637	RNF167 (ENSSHAG00000005762)	SLC25A11 (ENSSHAG00000021211)	ENO3 (ENSSHAG00000005934)	SPAG7 (ENSSHAG00000006017)	CAMTA2 (ENSSHAG00000006160)	ENSSHAG00000001775	ENSSHAG00000031691	ENSSHAG00000024969 #9	ZNHIT1 (ENSSHAG00000001394) #10	PLOD3 (ENSSHAG00000001739) #11	MOGAT3 (ENSSHAG00000002445) #12	AP1S1 (ENSSHAG00000031211) #15	SERPINE1 (ENSSHAG00000005182) #16	ACHE (ENSSHAG00000007328) #22	TRIP6 (ENSSHAG00000021455) #25	SRRT (ENSSHAG00000027991) #23	SLC12A9 (ENSSHAG00000007555) #26	EPHB4 (ENSSHAG00000007881) #27	EPO (ENSSHAG00000008258) #29	POP7 (ENSSHAG00000029232) #30	GIGYF1 (ENSSHAG00000008674) #31	GNB2 (ENSSHAG00000008760) #32	TFR2 (ENSSHAG00000008864) #34	FBXO24 (ENSSHAG00000009205) #37	PCOLCE (ENSSHAG00000009152) #36	ENSSHAG00000009335	LRCH4 (ENSSHAG00000029259)	ENSSHAG00000027994	AGFG2 (ENSSHAG00000000700)
Platypus	MODERN SPECIES	88	BORCS6 (ENSOANG00000036545)	ENSOANG00000005623	ENSOANG00000038991	CTC1 (ENSOANG00000015490)	PLOD3 (ENSOANG00000009832) #11	ENSOANG00000029581 #10	CLDN15 (ENSOANG00000038693) #9	FIS1 (ENSOANG00000037170) #8	ENSOANG00000042400	SLC25A35 (ENSOANG00000046557)	ENSOANG00000037602	ENSOANG00000000250 ##12	MOGAT3 (ENSOANG00000013413) #12	AP1S1 (ENSOANG00000042622) #15	SERPINE1 (ENSOANG00000031960) #16	ACHE (ENSOANG00000050305) #22	ENSOANG00000037346 #24	ENSOANG00000049684 #23	ENSOANG00000038967 #23	TRIP6 (ENSOANG00000011843) #25	SLC12A9 (ENSOANG00000046393) #26	EPHB4 (ENSOANG00000014567) #27	EPO (ENSOANG00000048808) #29	POP7 (ENSOANG00000040132) #30	GIGYF1 (ENSOANG00000047246) #31	GNB2 (ENSOANG00000046274) #32	ACTL6B (ENSOANG00000009988) #33	TFR2 (ENSOANG00000049917) #34	MOSPD3 (ENSOANG00000040790) #35	LRCH4 (ENSOANG00000047214)	FBXO24 (ENSOANG00000042029) #37
Sauria	ANCESTRAL SPECIES	64	ENSGT01030000234590.B.a.a	ENSGT00990000213051	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245	ENSGT00940000157637.b #22
Lepidosauria	ANCESTRAL SPECIES	152										ENSGT00390000016398 #13	ENSGT00910000144784	ENSGT01030000234582.f.b.g #12	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489.c #17	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT00390000010184
Episquamata	ANCESTRAL SPECIES	34										ENSGT00390000016398 #13	ENSGT00910000144784	ENSGT01030000234582.f.b.g #12	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489.c #17	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT00390000010184	ENSGT00390000000527	ENSGT01030000234590.B.a.b	ENSGT00390000009313.h	ENSGT00940000167092	ENSGT00940000155114	ENSGT00940000160229	ENSGT00950000183196.A
Laterata	ANCESTRAL SPECIES	58	ENSGT00940000156128.a	ENSGT00640000091486.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a	ENSGT00990000213051	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00910000144784	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489.c #17	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT00390000010184	ENSGT00390000000527	ENSGT01030000234590.B.a.b	ENSGT00390000009313.h	ENSGT00940000167092	ENSGT00940000155114	ENSGT00940000160229	ENSGT00950000183196.A	ENSGT00940000163073	ENSGT00940000160933	ENSGT00940000158465
Common wall lizard	MODERN SPECIES	4	MINK1 (ENSPMRG00000018917)	PLD2 (ENSPMRG00000022419)	PSMB6 (ENSPMRG00000023102)	ENSPMRG00000023111 #12	ENSPMRG00000023117	ENSPMRG00000023120	ENSPMRG00000023126 #12	ENSPMRG00000023133 #12	ENSPMRG00000023141 #12	ENSPMRG00000023151	AP1S1 (ENSPMRG00000023155) #15	SERPINE1 (ENSPMRG00000023160) #16	ENSPMRG00000023166 #17	ENSPMRG00000023177 #17	ENSPMRG00000023189 #17	ACHE (ENSPMRG00000023193) #22	ENSPMRG00000023200 ##12	ENSPMRG00000023210	ENSPMRG00000023215	ENSPMRG00000023219	TAF6 (ENSPMRG00000023228)	MBLAC1 (ENSPMRG00000023234)	ENSPMRG00000023237	ENSPMRG00000023238	ENSPMRG00000023240	GPC2 (ENSPMRG00000023255)	TRAPPC14 (ENSPMRG00000023277)	ENSPMRG00000023284	ENSPMRG00000023287	ENSPMRG00000023292	ENSPMRG00000023295
Argentine black and white tegu	MODERN SPECIES	38																ACHE (ENSSMRG00000020948) #22	C17orf49 (ENSSMRG00000020949)	RNASEK (ENSSMRG00000000037)	PELP1 (ENSSMRG00000000097)	ARRB2 (ENSSMRG00000000839)	MED11 (ENSSMRG00000000878)	ENSSMRG00000000892	ZMYND15 (ENSSMRG00000000904)	TM4SF5 (ENSSMRG00000000986)	VMO1 (ENSSMRG00000000998)	ENSSMRG00000001007	PSMB6 (ENSSMRG00000001015)	PLD2 (ENSSMRG00000001021)	MINK1 (ENSSMRG00000001054)	ENSSMRG00000001132	CHRNE (ENSSMRG00000001145)
Toxicofera	ANCESTRAL SPECIES	90																ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT00390000010184	ENSGT00390000000527	ENSGT01030000234590.B.a.b	ENSGT00940000167092
Elapidae	ANCESTRAL SPECIES	77																ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT00390000010184	ENSGT00390000000527	ENSGT01030000234590.B.a.b	ENSGT00940000167092
Elapidae_a	ANCESTRAL SPECIES	251																ENSGT00940000157637.b #22	ENSGT00390000009664	ENSGT00390000014721
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT00940000157637.b #22
Mainland tiger snake	MODERN SPECIES	2557																ACHE (ENSNSUG00000003537) #22
Eastern brown snake	MODERN SPECIES	1245																ACHE (ENSPTXG00000012909) #22
Blue-lipped sea krait	MODERN SPECIES	5406															ENSLLTG00000009059	ACHE (ENSLLTG00000009046) #22	RNASEK (ENSLLTG00000009012)	C17orf49 (ENSLLTG00000009033)
Indian cobra	MODERN SPECIES	282																ACHE (ENSNNAG00000016482) #22	C17orf49 (ENSNNAG00000016460)	RNASEK (ENSNNAG00000016451)	PELP1 (ENSNNAG00000016429)	ENSNNAG00000016003	ENSNNAG00000015958	ENSNNAG00000015932	ZMYND15 (ENSNNAG00000015855)	TM4SF5 (ENSNNAG00000015840)	VMO1 (ENSNNAG00000015820)
tuatara	MODERN SPECIES	1341																ACHE (ENSSPUG00000006743) #22	C17orf49 (ENSSPUG00000006758)	RNASEK (ENSSPUG00000006770)
Archelosauria	ANCESTRAL SPECIES	51	ENSGT01030000234590.B.a.a	ENSGT00990000213051	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT00390000010184	ENSGT00390000000527	ENSGT01030000234590.B.a.b	ENSGT00390000009313.i.a
Archosauria	ANCESTRAL SPECIES	59	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00980000200342	ENSGT01030000234582.f.b.g #12	ENSGT00640000091486.b	ENSGT00390000016193	ENSGT00940000153993.A	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT01030000236529	ENSGT00390000000527
Aves	ANCESTRAL SPECIES	61	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00980000200342	ENSGT01030000234582.f.b.g #12	ENSGT00640000091486.b	ENSGT00390000016193	ENSGT00940000153993.A	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT01030000236529	ENSGT00390000000527
Neognathae	ANCESTRAL SPECIES	45	ENSGT00980000200342	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000159144.C	ENSGT00940000153993.A	ENSGT00940000160860 #33	ENSGT00990000212021	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00940000159866	ENSGT00940000160289	ENSGT00940000159372.i.b.a	ENSGT01030000234579.A.a.d	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Galloanserae	ANCESTRAL SPECIES	87																ENSGT00940000157637.b #22	ENSGT01030000236567	ENSGT00390000009664	ENSGT00940000160688
Phasianidae	ANCESTRAL SPECIES	62																ENSGT00940000157637.b #22	ENSGT01030000236567	ENSGT00390000009664	ENSGT00940000160688
Japanese quail	MODERN SPECIES	45													ENSCJPG00005008296	ENSCJPG00005008300	ENSCJPG00005008301	ACHE (ENSCJPG00005008302) #22	ENSCJPG00005008303	ENSCJPG00005000930
Phasianidae_b	ANCESTRAL SPECIES	72																ENSGT00940000157637.b #22	ENSGT01030000236567	ENSGT00390000009664	ENSGT00940000160688
Chicken	MODERN SPECIES	71														ENSGALG00010000448	ENSGALG00010000451	ACHE (ENSGALG00010000453) #22	ENSGALG00010000465	RNASEK (ENSGALG00010000467)	ENSGALG00010000469	ENSGALG00010000471
Turkey	MODERN SPECIES	1054																ENSMGAG00000021634 #22
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000157637.b #22
Pink-footed goose	MODERN SPECIES	955																ACHE (ENSABRG00000018835) #22
Neognathae_b	ANCESTRAL SPECIES	40	ENSGT00940000160105	ENSGT00940000159295	ENSGT00940000159264 #36	ENSGT00940000159528.c	ENSGT00940000161071	ENSGT00940000159144.C	ENSGT00940000153993.A	ENSGT00940000160860 #33	ENSGT00990000212021	ENSGT00940000170871	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00390000004049	ENSGT00940000159866	ENSGT00940000160289	ENSGT01030000234579.A.a.d	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Passeriformes	ANCESTRAL SPECIES	46	ENSGT00940000160105	ENSGT00940000159295	ENSGT00940000159264 #36	ENSGT00940000159528.c	ENSGT00940000161071	ENSGT00940000159144.C	ENSGT00940000153993.A	ENSGT00940000160860 #33	ENSGT00990000212021	ENSGT00940000170871	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00390000004049	ENSGT00940000159866	ENSGT00940000160289	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a.c.b	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Passeriformes_d	ANCESTRAL SPECIES	42	ENSGT00940000153664.A.a	ENSGT00390000001520	ENSGT00940000160105	ENSGT00940000159295	ENSGT00940000159264 #36	ENSGT00940000159144.C	ENSGT00940000153993.A	ENSGT00940000160860 #33	ENSGT00990000212021	ENSGT00940000170871	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00390000004049	ENSGT00940000159866	ENSGT00940000160289	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a.c.b	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Passeriformes_g	ANCESTRAL SPECIES	51	ENSGT00940000153664.A.a	ENSGT00390000001520	ENSGT00940000160105	ENSGT00940000159295	ENSGT00940000159264 #36	ENSGT00940000159144.C	ENSGT00940000153993.A	ENSGT00940000160860 #33	ENSGT00990000212021	ENSGT00940000170871	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00390000004049	ENSGT00940000159866	ENSGT00940000160289	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a.c.b	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Passeroidea	ANCESTRAL SPECIES	62										ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00390000004049	ENSGT00940000159866	ENSGT00940000160289	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a.c.b	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Zebra finch	MODERN SPECIES	74	NLGN2 (ENSTGUG00000026009)	ENSTGUG00000026637	ENSTGUG00000022981	ENSTGUG00000022020	ENSTGUG00000022070	ENSTGUG00000022231	ENSTGUG00000019432	ENSTGUG00000021052	ENSTGUG00000020495	ENSTGUG00000022471	ENSTGUG00000022718	ENSTGUG00000021991	ENSTGUG00000029772	ENSTGUG00000028853	ENSTGUG00000022607 #15	ACHE (ENSTGUG00000022998) #22	ENSTGUG00000029616	ENSTGUG00000025920	ENSTGUG00000026771	ENSTGUG00000023541	ENSTGUG00000028599	ENSTGUG00000028457	ENSTGUG00000020666	ENSTGUG00000020452	ENSTGUG00000020912	ATP1B2 (ENSTGUG00000020126)	ENSTGUG00000027904	ENSTGUG00000020938	ENSTGUG00000021459	ENSTGUG00000026333	ENSTGUG00000028822
Cryptodira	ANCESTRAL SPECIES	114																ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT00390000010184	ENSGT00390000000527	ENSGT01030000234590.B.a.b	ENSGT00390000009313.i.a
Testudinoidea	ANCESTRAL SPECIES	53				ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00990000213051	ENSGT01030000234590.B.a.a	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00910000144784	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000162489.c.a #17	ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT00390000010184	ENSGT00390000000527	ENSGT01030000234590.B.a.b	ENSGT00390000009313.i.a	ENSGT00940000167092	ENSGT00940000155114	ENSGT00940000160229	ENSGT00950000183196.A	ENSGT00940000160933	ENSGT00940000158465
Emydidae	ANCESTRAL SPECIES	142																ENSGT00940000157637.b #22	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT01030000236529	ENSGT00390000000527	ENSGT01030000234590.B.a.b
Three-toed box turtle	MODERN SPECIES	2148																ACHE (ENSTMTG00000020429) #22
painted turtle	MODERN SPECIES	1425																ACHE (ENSCPBG00000013012) #22	C17orf49 (ENSCPBG00000013013)	ENSCPBG00000013019	PELP1 (ENSCPBG00000013021)	ARRB2 (ENSCPBG00000013035)	ENSCPBG00000013333	ZMYND15 (ENSCPBG00000013334)	TM4SF5 (ENSCPBG00000013335)	ENSCPBG00000013336
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000157637.b #22
Abingdon island giant tortoise	MODERN SPECIES	39															ENSCABG00000020553	ACHE (ENSCABG00000020554) #22	RNASEK (ENSCABG00000020555)	PELP1 (ENSCABG00000020556)	MED11 (ENSCABG00000020557)	TM4SF5 (ENSCABG00000020558)	ENSCABG00000020559	ENSCABG00000020560	ENSCABG00000020561	PSMB6 (ENSCABG00000020562)	PLD2 (ENSCABG00000020563)	ENSCABG00000020621	CHRNE (ENSCABG00000020625)	SLC25A11 (ENSCABG00000020628)	ENSCABG00000020630
Chinese turtle	MODERN SPECIES	548																ACHE (ENSPSIG00000003313) #22	C17orf49 (ENSPSIG00000003263)	RNASEK (ENSPSIG00000003248)	PELP1 (ENSPSIG00000003171)	ARRB2 (ENSPSIG00000018222)	ENSPSIG00000018216
Anura	ANCESTRAL SPECIES	131	ENSGT00390000014725	ENSGT00390000016053	ENSGT00990000213051	ENSGT01030000234590.B.a.a.d	ENSGT01030000234590.B.a.a.c	ENSGT00390000016193	ENSGT00640000091486.b	ENSGT00940000156128.a	ENSGT01030000234582.f.b.g #12	ENSGT00390000016398 #13	ENSGT00940000165408	ENSGT01070000256738	ENSGT00970000193372.a.b #15	ENSGT00940000160621 #16	ENSGT00940000154419.a.c #20	ENSGT00940000157637.b #22	ENSGT01030000234621.D	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000167512	ENSGT00950000182887.C.a.a.b
Frog	MODERN SPECIES	3	XB5761890 [provisional:nat16] (ENSXETG00000032859)	ENSXETG00000044585	ENSXETG00000047415	ENSXETG00000048980	ENSXETG00000043937	ap1s1 (ENSXETG00000015447) #15	serpine1 (ENSXETG00000015448) #16	ENSXETG00000046002	ENSXETG00000048529	ENSXETG00000041628	ENSXETG00000047869	ENSXETG00000041873	ENSXETG00000049495	ENSXETG00000041616	ENSXETG00000046780 #20	ache (ENSXETG00000017226) #22	ENSXETG00000025735	c17orf49 (ENSXETG00000017227)	rnasek (ENSXETG00000017228)	pelp1 (ENSXETG00000017229)	arrb2 (ENSXETG00000044534)	ddx27 (ENSXETG00000017231)	ENSXETG00000031312	TNFSF14 (ENSXETG00000047773)	ENSXETG00000032992	ENSXETG00000037171	ENSXETG00000034841	XB5961369 [provisional:plpp3] (ENSXETG00000017268)	c3 (ENSXETG00000017270)	ENSXETG00000045964	c3p1 (ENSXETG00000048045)
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000012469	ENSLLEG00000012200	ENSLLEG00000011916	SLC25A23 (ENSLLEG00000011578)	ENSLLEG00000011499	ENSLLEG00000011461	DENND1C (ENSLLEG00000011348)	ENSLLEG00000011260	KHSRP (ENSLLEG00000011156)	MRI1 (ENSLLEG00000011067)	ENSLLEG00000011033	ENSLLEG00000010795	NANOS3 (ENSLLEG00000010759)	ENSLLEG00000010735	ENSLLEG00000010700	ACHE (ENSLLEG00000010628) #22	ENSLLEG00000010606	C17orf49 (ENSLLEG00000010539)	RNASEK (ENSLLEG00000010493)	ENSLLEG00000010319	ARRB2 (ENSLLEG00000009872)	ENSLLEG00000009084	ENSLLEG00000008993	ENSLLEG00000008758	ENSLLEG00000012959	ENSLLEG00000012934	ENSLLEG00000012863 #20	ENSLLEG00000012815	ENSLLEG00000012802	ENSLLEG00000012746	ENSLLEG00000012687
Actinopterygii	ANCESTRAL SPECIES	157	ENSGT00940000159929	ENSGT01050000244824.C	ENSGT00390000005067	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00940000164245	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00940000165408	ENSGT00940000154419 #21	ENSGT00940000157637.b #22	ENSGT00840000132239	ENSGT01030000234621.D	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00390000010184	ENSGT00950000182887.C.a.a.a.a
Neopterygii	ANCESTRAL SPECIES	208						ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00940000164245	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT00840000132239	ENSGT01030000234621.D	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00390000010184	ENSGT00950000182887.C.a.a.a.a
Osteoglossocephalai	ANCESTRAL SPECIES	124								ENSGT00910000144784.b	ENSGT00940000164245	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.d	ENSGT00840000132239	ENSGT01030000234621.D.c	ENSGT00390000014721	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00390000010184	ENSGT00950000182887.C.a.a.a.a.b	ENSGT00950000182887.C.a.a.a.a.a	ENSGT00940000153299.a.a	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00730000111366
Clupeocephala	ANCESTRAL SPECIES	50	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883.b	ENSGT00940000165991	ENSGT00940000164592	ENSGT00940000153284.a.mc.a	ENSGT00940000153904.b	ENSGT00950000182963.b.b	ENSGT00390000005569	ENSGT00530000063624.B	ENSGT00940000157843	ENSGT00950000183118.A.c.b.a	ENSGT00510000050937	ENSGT00940000160940	ENSGT00940000159479
Otomorpha	ANCESTRAL SPECIES	195	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT00390000014721.c.a	ENSGT01030000234621.D.c	ENSGT00840000132239	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.a.a.a	ENSGT00940000153299.a.a	ENSGT00940000154344.a	ENSGT00940000153669.b.o	ENSGT00940000157029	ENSGT00730000111366
Clupeiformes	ANCESTRAL SPECIES	97	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000164245	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT00390000014721.c.a	ENSGT01030000234621.D.c
Denticle herring	MODERN SPECIES		ENSDCDG00000005144	STIM2 (ENSDCDG00000005046)	tbc1d19 (ENSDCDG00000004801)	CCKAR (ENSDCDG00000004766)	RBPJ (ENSDCDG00000004747)	ENSDCDG00000004739	ENSDCDG00000004737	ENSDCDG00000004734	smim20 (ENSDCDG00000004732)	serpine1 (ENSDCDG00000004683) #16	ap1s1 (ENSDCDG00000004640) #15	ENSDCDG00000004635	nat16l (ENSDCDG00000004633) #13	NAT16 (ENSDCDG00000004631) #13	ENSDCDG00000004627	ache (ENSDCDG00000004625) #22	zgc:92664 (ENSDCDG00000004620)	ENSDCDG00000004618	ENSDCDG00000004614	ENSDCDG00000004611	ENSDCDG00000004600	ENSDCDG00000004585	ENSDCDG00000004577	ENSDCDG00000004567	hdac8 (ENSDCDG00000004541)	cited1 (ENSDCDG00000004532)	rps4x (ENSDCDG00000004529)	ENSDCDG00000004523	arhgap36 (ENSDCDG00000004517)	ENSDCDG00000004510	rasl11a (ENSDCDG00000004508)
Atlantic herring	MODERN SPECIES	9	her8a (ENSCHAG00000004974)	gal3st4 (ENSCHAG00000004953)	trappc14 (ENSCHAG00000004935)	ENSCHAG00000004911	ENSCHAG00000004890	ENSCHAG00000004869	zmat2 (ENSCHAG00000004747)	zgc:77439 (ENSCHAG00000004708)	zgc:77439 (ENSCHAG00000004631)	serpine1 (ENSCHAG00000004350) #16	ap1s1 (ENSCHAG00000004190) #15	ENSCHAG00000004174	nat16l (ENSCHAG00000004164) #13	NAT16 (ENSCHAG00000004139) #13	ENSCHAG00000004075	ache (ENSCHAG00000004001) #22	zgc:92664 (ENSCHAG00000003976)	ENSCHAG00000003956	ENSCHAG00000003138	ankrd46b (ENSCHAG00000003053)	ENSCHAG00000002388	ENSCHAG00000026687	gc2 (ENSCHAG00000026566)	rasl11a (ENSCHAG00000026553)	USP12 (ENSCHAG00000026520)	arhgap36 (ENSCHAG00000026517)	ENSCHAG00000026514	rps4x (ENSCHAG00000026509)	hdac8 (ENSCHAG00000026502)	PHKA1 (ENSCHAG00000026338)	leap2 (ENSCHAG00000026321)
Otophysi	ANCESTRAL SPECIES	50	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000177336	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT00390000014721.c.a	ENSGT01030000234621.D.c	ENSGT00840000132239	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00950000182887.C.a.a.a.a.a	ENSGT00940000153299.a.a	ENSGT00940000154344.a	ENSGT00940000153669.b.o	ENSGT00940000157029	ENSGT00730000111366	ENSGT00940000156187	ENSGT00800000124060.A.a	ENSGT00390000005739.a.a
Characiphysae	ANCESTRAL SPECIES	19	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000177336	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT00390000014721.c.a	ENSGT01030000234621.D.c	ENSGT00840000132239	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00950000182887.C.a.a.a.a.a	ENSGT00940000153299.a.a	ENSGT00940000154344.a	ENSGT00940000153669.b.o	ENSGT00940000157029	ENSGT00730000111366	ENSGT00940000154932.A.w	ENSGT00940000156187	ENSGT00800000124060.A.a
Characiphysae_b	ANCESTRAL SPECIES	18	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000177336	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT00390000014721.c.a	ENSGT01030000234621.D.c	ENSGT00840000132239	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00950000182887.C.a.a.a.a.a	ENSGT00940000153299.a.a	ENSGT00940000154344.a	ENSGT00940000153669.b.o	ENSGT00940000157029	ENSGT00730000111366	ENSGT00940000154932.A.w	ENSGT00940000156187	ENSGT00800000124060.A.a
Characoidei	ANCESTRAL SPECIES	9	ENSGT00940000153916.A.b	ENSGT00940000163587.a.b.b.f	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000177336	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT00390000014721.c.a	ENSGT01030000234621.D.c	ENSGT00840000132239	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00950000182887.C.a.a.a.a.a	ENSGT00940000153299.a.a	ENSGT00940000154344.a	ENSGT00940000153669.b.o	ENSGT00940000157029	ENSGT00730000111366	ENSGT00940000154932.A.w	ENSGT00940000156187	ENSGT00800000124060.A.a
Red-bellied piranha	MODERN SPECIES	162																ache (ENSPNAG00000018355) #22	zgc:92664 (ENSPNAG00000018390)	ENSPNAG00000018416	ENSPNAG00000018433	rnaseka (ENSPNAG00000018446)	alox12 (ENSPNAG00000018465)	ENSPNAG00000018479	ENSPNAG00000018573	arrb2b (ENSPNAG00000018654)	hmgb3a (ENSPNAG00000018667)	cd99l2 (ENSPNAG00000018684)	mtmr1a (ENSPNAG00000018802)	mtm1 (ENSPNAG00000018897)	ENSPNAG00000018908	ENSPNAG00000018918	dysf (ENSPNAG00000019042)
Mexicana tetra	MODERN SPECIES	7	senp3b (ENSAMXG00000011802)	eif4a1a (ENSAMXG00000030251)	sox19b (ENSAMXG00000035936)	mpdu1b (ENSAMXG00000040864)	ENSAMXG00000030988	ENSAMXG00000035360	zgc:77439 (ENSAMXG00000011762)	serpine1 (ENSAMXG00000011753) #16	ap1s1 (ENSAMXG00000011750) #15	ENSAMXG00000029471	nat16l (ENSAMXG00000041166) #13	nat16l (ENSAMXG00000044029) #13	nat16l (ENSAMXG00000011747) #13	NAT16 (ENSAMXG00000011746) #13	ENSAMXG00000038205	ache (ENSAMXG00000005681) #22	zgc:92664 (ENSAMXG00000034553)	ENSAMXG00000025011	ENSAMXG00000036678	rnaseka (ENSAMXG00000043800)	alox12 (ENSAMXG00000011736)	ENSAMXG00000031516	ARRB2 (ENSAMXG00000033133)	hmgb3a (ENSAMXG00000011713)	cd99l2 (ENSAMXG00000011711)	mtmr1a (ENSAMXG00000011706)	mtm1 (ENSAMXG00000011696)	ENSAMXG00000034449	ENSAMXG00000029106	ENSAMXG00000036685	dysf (ENSAMXG00000011598)
Electric eel	MODERN SPECIES	244	mpdu1b (ENSEEEG00000011830)	ENSEEEG00000011827	ENSEEEG00000011825	her8a (ENSEEEG00000011824)	gal3st4 (ENSEEEG00000011822)	trappc14 (ENSEEEG00000011821)	ENSEEEG00000011820 #28	zgc:77439 (ENSEEEG00000011819)	serpine1 (ENSEEEG00000011813) #16	ap1s1 (ENSEEEG00000011803) #15	ENSEEEG00000011802	ENSEEEG00000011800	nat16l (ENSEEEG00000011799) #13	NAT16 (ENSEEEG00000011798) #13	ENSEEEG00000011797	ache (ENSEEEG00000011796) #22	zgc:92664 (ENSEEEG00000011793)	ENSEEEG00000011790	rnaseka (ENSEEEG00000011789)	alox12 (ENSEEEG00000011730)	ENSEEEG00000011728	ENSEEEG00000011726	arrb2b (ENSEEEG00000011720)	hmgb3a (ENSEEEG00000011717)	cd99l2 (ENSEEEG00000011715)	mtmr1a (ENSEEEG00000011659)	mtm1 (ENSEEEG00000011644)	ENSEEEG00000011640
Channel catfish	MODERN SPECIES	26	eif4a1a (ENSIPUG00000005117)	sox19a (ENSIPUG00000005096)	mpdu1 (ENSIPUG00000005074)	mblac1 (ENSIPUG00000005067)	ENSIPUG00000005060	her8a (ENSIPUG00000005051)	gal3st4 (ENSIPUG00000005036)	c7h7orf43 (ENSIPUG00000004986)	ENSIPUG00000004970 #28	zgc:77439 (ENSIPUG00000004948)	serpine1 (ENSIPUG00000004897) #16	ap1s1 (ENSIPUG00000004872) #15	nat16l (ENSIPUG00000004862) #13	nat16 (ENSIPUG00000004852) #13	Snapc2 (ENSIPUG00000004844)	ache (ENSIPUG00000004824) #22	zgc:92664 (ENSIPUG00000004810)	ENSIPUG00000004789	alox12 (ENSIPUG00000004748)	ENSIPUG00000004739	ENSIPUG00000004726	ENSIPUG00000004717	rnaseka (ENSIPUG00000004703)	alox12 (ENSIPUG00000004632)	pelp1 (ENSIPUG00000004556)	arrb2b (ENSIPUG00000004505)	cd99l2 (ENSIPUG00000004468)	mtmr1 (ENSIPUG00000004388)	mtm1 (ENSIPUG00000004289)	mamld1 (ENSIPUG00000004273)	ENSIPUG00000004260
Cyprinoidei	ANCESTRAL SPECIES	14														ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT00390000014721.c.a	ENSGT01030000234621.D.c	ENSGT00840000132239	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00950000182887.C.a.a.a.a.a	ENSGT00940000153299.a.a	ENSGT00940000154344.a	ENSGT00940000153669.b.o	ENSGT00940000157029	ENSGT00990000212832	ENSGT00730000111366	ENSGT00940000156187	ENSGT00800000124060.A.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	262	ENSGT00940000165992.a.a.b	ENSGT00940000153916.A.b.h	ENSGT00390000016193.b	ENSGT01030000234590.B.a.a.e.b.a	ENSGT01040000240444.A.a.b.c	ENSGT00940000164578.a.b.a.b	ENSGT00950000182923.B.b.f	ENSGT00390000014725.r.a.b	ENSGT00940000156850.a.a.d #28	ENSGT00940000164245.j.a	ENSGT00940000160621.n #16	ENSGT00970000193372.a.b.`b.b #15	ENSGT00910000144784.a.d	ENSGT00390000016398.b.d #13	ENSGT00390000016398.a.d #13	ENSGT00940000157637.b.a #22	ENSGT00390000014721.c.a.d	ENSGT01030000234621.D.c.b
Cyprininae_a	ANCESTRAL SPECIES	60	ENSGT00940000153916.A.b.h	ENSGT00390000016193.b	ENSGT01030000234590.B.a.a.e.b.a	ENSGT01040000240444.A.a.b.c	ENSGT00940000164578.a.b.a.b	ENSGT00950000182923.B.b.f	ENSGT00390000014725.r.a.b	ENSGT00940000156850.a.a.d #28	ENSGT00940000164245.j.a	ENSGT00940000160621.n #16	ENSGT00970000193372.a.b.`b.b #15	ENSGT00910000144784.a.d	ENSGT00390000016398.b.d #13	ENSGT00390000016398.a.d #13	ENSGT00390000017407.b	ENSGT00940000157637.b.a #22	ENSGT00390000014721.c.a.d	ENSGT01030000234621.D.c.b	ENSGT00840000132239	ENSGT00390000009664.a.k	ENSGT00940000155191.b.h	ENSGT00940000167512.a	ENSGT00950000182887.C.a.a.a.a.a.a	ENSGT00940000153299.a.a.a	ENSGT00940000154344.a.d.b	ENSGT00940000153669.b.o.a	ENSGT00940000157029.h	ENSGT00730000111366.n	ENSGT01040000240385.A.b.b.b.a.a.a.c.a.c.a	ENSGT00940000156187.a	ENSGT00800000124060.A.a.c
Common carp reference	MODERN SPECIES	6	sox19b (ENSCCRG00000010552)	ENSCCRG00000068865	ENSCCRG00000013572	ENSCCRG00000062783	her8a (ENSCCRG00000013566)	gal3st4 (ENSCCRG00000082087)	trappc14 (ENSCCRG00000018242)	zanl (ENSCCRG00000018211) #28	zgc:77439 (ENSCCRG00000018198)	serpine1 (ENSCCRG00000016163) #16	ap1s1 (ENSCCRG00000061521) #15	ENSCCRG00000071818	nat16l (ENSCCRG00000033746) #13	ENSCCRG00000054089	ENSCCRG00000056208	ache (ENSCCRG00000072608) #22	zgc:92664 (ENSCCRG00000039737)	ENSCCRG00000039742	ENSCCRG00000082728	rnaseka (ENSCCRG00000066214)	alox12 (ENSCCRG00000039761)	ENSCCRG00000039772	arrb2b (ENSCCRG00000039802)	hmgb3a (ENSCCRG00000059202)	cd99l2 (ENSCCRG00000079388)	mtmr1a (ENSCCRG00000007652)	mtm1 (ENSCCRG00000004008)	ENSCCRG00000079155	ENSCCRG00000001944	dysf (ENSCCRG00000045023)	cyp26b1 (ENSCCRG00000039749)
Golden-line barbel	MODERN SPECIES	9	MBLAC1 (ENSSGRG00000033743)	ENSSGRG00000033747	ENSSGRG00000033771	her8a (ENSSGRG00000033773)	gal3st4 (ENSSGRG00000033774)	trappc14 (ENSSGRG00000033776)	zanl (ENSSGRG00000033779) #28	zgc:77439 (ENSSGRG00000033786)	serpine1 (ENSSGRG00000033790) #16	ap1s1 (ENSSGRG00000033793) #15	ENSSGRG00000033797	ENSSGRG00000033798	nat16l (ENSSGRG00000033801) #13	NAT16 (ENSSGRG00000033804) #13	ENSSGRG00000033807	ache (ENSSGRG00000033809) #22	zgc:92664 (ENSSGRG00000033812)	ENSSGRG00000033816	rnaseka (ENSSGRG00000033818)	alox12 (ENSSGRG00000033831)	ENSSGRG00000033941	arrb2b (ENSSGRG00000033969)	hmgb3a (ENSSGRG00000035206)	cd99l2 (ENSSGRG00000035208)	mtmr1a (ENSSGRG00000035212)	mtm1 (ENSSGRG00000035281)	ENSSGRG00000035508	dysf (ENSSGRG00000035529)	ENSSGRG00000036439	ENSSGRG00000036441	edn3b (ENSSGRG00000036445)
Goldfish	MODERN SPECIES	25	tnk1 (ENSCARG00000020902)	senp3b (ENSCARG00000020935)	ENSCARG00000020980	sox19b (ENSCARG00000021257)	MBLAC1 (ENSCARG00000021267)	ENSCARG00000021274	her8a (ENSCARG00000021316)	gal3st4 (ENSCARG00000021319)	ENSCARG00000021341	trappc14 (ENSCARG00000021347)	serpine1 (ENSCARG00000021365) #16	ap1s1 (ENSCARG00000021375) #15	ENSCARG00000021409	nat16l (ENSCARG00000021414) #13	NAT16 (ENSCARG00000021421) #13	ache (ENSCARG00000021427) #22	zgc:92664 (ENSCARG00000021438)	ENSCARG00000021451	ENSCARG00000021460	alox12 (ENSCARG00000021478)	ENSCARG00000021571	alox12 (ENSCARG00000021592)	rnaseka (ENSCARG00000021699)	ENSCARG00000021712	alox12 (ENSCARG00000021737)	ENSCARG00000021830	arrb2b (ENSCARG00000021949)	hmgb3a (ENSCARG00000022855)	cd99l2 (ENSCARG00000022880)	mtmr1a (ENSCARG00000022922)	mtm1 (ENSCARG00000023100)
Cyprininae	ANCESTRAL SPECIES	1	ENSGT00940000153916.A.b.g	ENSGT00390000016193.a	ENSGT01030000234590.B.a.a.e.b.b	ENSGT01040000240444.A.a.b.d	ENSGT00940000164578.a.b.a.a	ENSGT00950000182923.B.b.e	ENSGT00390000014725.r.a.a	ENSGT00940000156850.a.a.c.a #28	ENSGT00940000164245.j.b	ENSGT00940000160621.m #16	ENSGT00970000193372.a.b.`b.a #15	ENSGT00910000144784.a.c	ENSGT00390000016398.b.c #13	ENSGT00390000016398.a.c #13	ENSGT00390000017407	ENSGT00940000157637.b.b #22	ENSGT00390000014721.c.a.c	ENSGT01030000234621.D.c.a	ENSGT00390000009664.a.l	ENSGT00940000155191.b.g	ENSGT00940000167512.b	ENSGT00950000182887.C.a.a.a.a.a.b	ENSGT00940000153299.a.a.b	ENSGT00940000154344.a.d.a	ENSGT00940000153669.b.o.b	ENSGT00940000157029.g.b	ENSGT00730000111366.m	ENSGT01040000240385.A.b.b.b.a.a.a.c.a.c.b	ENSGT01040000240385.A.b.b.b.a.a.a.c.a.d	ENSGT00940000156187.b	ENSGT00800000124060.A.a.d
Goldfish	MODERN SPECIES	47	mpdu1b (ENSCARG00000015204)	MBLAC1 (ENSCARG00000015221)	ENSCARG00000015230	ENSCARG00000015257	her8a (ENSCARG00000015258)	gal3st4 (ENSCARG00000015266)	trappc14 (ENSCARG00000015274)	zanl (ENSCARG00000015313) #28	zgc:77439 (ENSCARG00000015364)	serpine1 (ENSCARG00000015372) #16	ap1s1 (ENSCARG00000015399) #15	ENSCARG00000015422	nat16l (ENSCARG00000015428) #13	NAT16 (ENSCARG00000015433) #13	ENSCARG00000015439	ache (ENSCARG00000015442) #22	zgc:92664 (ENSCARG00000015447)	ENSCARG00000015453	ENSCARG00000015459	alox12 (ENSCARG00000015477)	ENSCARG00000015576	arrb2b (ENSCARG00000015631)	ENSCARG00000016968	hmgb3a (ENSCARG00000016978)	ENSCARG00000016990	cd99l2 (ENSCARG00000017002)	mtmr1a (ENSCARG00000017105)	mtm1 (ENSCARG00000017733)	ENSCARG00000018514	ENSCARG00000018524	ENSCARG00000018532
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT00940000153916.A.b.g	ENSGT00390000016193.a	ENSGT01030000234590.B.a.a.e.b.b	ENSGT01040000240444.A.a.b.d	ENSGT00940000164578.a.b.a.a	ENSGT00950000182923.B.b.e	ENSGT00390000014725.r.a.a	ENSGT00940000156850.a.a.c.a #28	ENSGT00940000164245.j.b	ENSGT00940000160621.m #16	ENSGT00970000193372.a.b.`b.a #15	ENSGT00910000144784.a.c	ENSGT00390000016398.b.c #13	ENSGT00390000016398.a.c #13	ENSGT00390000017407.a	ENSGT00940000157637.b.b #22	ENSGT00390000014721.c.a.c	ENSGT01030000234621.D.c.a	ENSGT00390000009664.a.l	ENSGT00940000155191.b.g	ENSGT00940000167512.b	ENSGT00950000182887.C.a.a.a.a.a.b	ENSGT00940000153299.a.a.b	ENSGT00940000154344.a.d.a	ENSGT00940000153669.b.o.b	ENSGT00940000157029.g.b	ENSGT00730000111366.m	ENSGT01040000240385.A.b.b.b.a.a.a.c.a.c.b	ENSGT01040000240385.A.b.b.b.a.a.a.c.a.d	ENSGT00940000156187.b	ENSGT00800000124060.A.a.d
Common carp reference	MODERN SPECIES		sox19b (ENSCCRG00000060603)	mpdu1b (ENSCCRG00000062157)	ENSCCRG00000018753	her8a (ENSCCRG00000055719)	ENSCCRG00000082455	gal3st4 (ENSCCRG00000016125)	trappc14 (ENSCCRG00000056308)	zanl (ENSCCRG00000062073) #28	zgc:77439 (ENSCCRG00000016139)	serpine1 (ENSCCRG00000073031) #16	ap1s1 (ENSCCRG00000067234) #15	ENSCCRG00000070225	ENSCCRG00000068742	nat16l (ENSCCRG00000012576) #13	ENSCCRG00000012572	ache (ENSCCRG00000077302) #22	zgc:92664 (ENSCCRG00000012568)	ENSCCRG00000066028	rnaseka (ENSCCRG00000075667)	alox12 (ENSCCRG00000012385)	ENSCCRG00000012371	arrb2b (ENSCCRG00000005480)	hmgb3a (ENSCCRG00000060347)	cd99l2 (ENSCCRG00000054773)	mtmr1a (ENSCCRG00000024693)	mtm1 (ENSCCRG00000016387)	ENSCCRG00000003992	ENSCCRG00000064937	ENSCCRG00000001957	dysf (ENSCCRG00000001960)	cyp26b1 (ENSCCRG00000060083)
Golden-line barbel	MODERN SPECIES	23	ENSSGRG00000038278	ENSSGRG00000038281	ENSSGRG00000038331	her8a (ENSSGRG00000038333)	her8a (ENSSGRG00000038335)	gal3st4 (ENSSGRG00000038336)	trappc14 (ENSSGRG00000038338)	ENSSGRG00000038344	zgc:77439 (ENSSGRG00000038348)	serpine1 (ENSSGRG00000038349) #16	ap1s1 (ENSSGRG00000038354) #15	ENSSGRG00000038419	nat16l (ENSSGRG00000038420) #13	NAT16 (ENSSGRG00000038422) #13	ENSSGRG00000038423	ache (ENSSGRG00000038424) #22	ENSSGRG00000038428	rnaseka (ENSSGRG00000038430)	alox12 (ENSSGRG00000038435)	ENSSGRG00000038483	arrb2b (ENSSGRG00000038507)	hmgb3a (ENSSGRG00000039578)	cd99l2 (ENSSGRG00000039581)	mtmr1a (ENSSGRG00000039627)	ENSSGRG00000040921	ENSSGRG00000040922	ENSSGRG00000040923	dysf (ENSSGRG00000040980)	cyp26b1 (ENSSGRG00000043056)	exoc6b (ENSSGRG00000043094)	badb (ENSSGRG00000044092)
Zebrafish	MODERN SPECIES	22	ENSDARG00000056762	ENSDARG00000077644	her8a (ENSDARG00000016363)	gal3st4 (ENSDARG00000079712)	trappc14 (ENSDARG00000078891)	zanl (ENSDARG00000056781) #28	zgc:77439 (ENSDARG00000039211)	serpine1 (ENSDARG00000056795) #16	ap1s1 (ENSDARG00000056803) #15	ENSDARG00000105529	nat16l (ENSDARG00000076402) #13	si:ch211-196f2.6 (ENSDARG00000105615)	NAT16 (ENSDARG00000086222) #13	ENSDARG00000036473	ENSDARG00000105522	ache (ENSDARG00000031796) #22	C10H17orf49 (ENSDARG00000015161)	ENSDARG00000069459	ENSDARG00000105575	rnaseka (ENSDARG00000069461)	alox12 (ENSDARG00000069463)	ENSDARG00000079313	arrb2b (ENSDARG00000011545)	hmgb3a (ENSDARG00000056725)	ENSDARG00000114950	ENSDARG00000114221	cd99l2 (ENSDARG00000056722)	mtmr1a (ENSDARG00000056690)	mtm1 (ENSDARG00000037560)	dysf (ENSDARG00000007370)	cyp26b1 (ENSDARG00000077121)
Euteleosteomorpha	ANCESTRAL SPECIES	164	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.s	ENSGT00990000211448	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00950000182887.C.a.a.a.b	ENSGT00940000153299.a.a	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00730000111366
Acanthomorphata	ANCESTRAL SPECIES	143	ENSGT00940000163587.a.b.b.f	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00940000153299.a.a	ENSGT00940000153669.b	ENSGT00940000157029
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00940000163587.a.b.b.f	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.s	ENSGT00990000211448	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00940000153299.a.a	ENSGT00940000153669.b	ENSGT00940000157029
Percomorphaceae	ANCESTRAL SPECIES	39	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00940000163587.a.b.b.f	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.s	ENSGT00990000211448	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13
Tiger tail seahorse	MODERN SPECIES	181	CORIN (ENSHCOG00000016318)	ENSHCOG00000016333	ENSHCOG00000017673	ENSHCOG00000017740	bmp15 (ENSHCOG00000017821)	ENSHCOG00000017837	btr12 (ENSHCOG00000017873)	ENSHCOG00000018866	ENSHCOG00000018927	casq1b (ENSHCOG00000019048)	PEA15 (ENSHCOG00000019077)	abcg2a (ENSHCOG00000019189)	ENSHCOG00000019222	rnf150b (ENSHCOG00000019254)	ENSHCOG00000019296	ache (ENSHCOG00000019333) #22	PHKA1 (ENSHCOG00000000608)	hdac8 (ENSHCOG00000019407)	ENSHCOG00000019430	btg3 (ENSHCOG00000019452)	ENSHCOG00000019468	PELI3 (ENSHCOG00000000520)	RCE1 (ENSHCOG00000019531)	cd248a (ENSHCOG00000019556)	ENSHCOG00000019569	znf16l (ENSHCOG00000019583)	cited1 (ENSHCOG00000000655)	rps4x (ENSHCOG00000019605)	ENSHCOG00000019611	arhgap36 (ENSHCOG00000019651)	ENSHCOG00000019702
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00940000153916.A.b	ENSGT00940000163587.a.b.b.f	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.s	ENSGT00990000211448	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00940000163587.a.b.b.f	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00940000163587.a.b.b.f	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Tetraodontidae	ANCESTRAL SPECIES	67	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT00900000140979.a.a	ENSGT00940000166804	ENSGT00940000153889.r	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b.v	ENSGT00940000157029	ENSGT00390000016398.a #13
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	APOBEC2 (ENSTNIG00000005485)	BARHL1 (ENSTNIG00000005484)	SPATA5 (ENSTNIG00000005483)	ENSTNIG00000005918	ENSTNIG00000005474	ENSTNIG00000005473	ENSTNIG00000005466	ENSTNIG00000005458	ercc3 (ENSTNIG00000005457)	ENSTNIG00000000146	ENSTNIG00000001151	ENSTNIG00000000047	ENSTNIG00000005445	ENSTNIG00000005444	ENSTNIG00000005443	ENSTNIG00000005442 #22	dicer1 (ENSTNIG00000005441)	rgma (ENSTNIG00000001318)	ENSTNIG00000005432	ENSTNIG00000005423	iars2 (ENSTNIG00000005422)	qrsl1 (ENSTNIG00000005421)	rtn4ip1 (ENSTNIG00000005420)	ENSTNIG00000000890	HHIPL1 (ENSTNIG00000005419)	ENSTNIG00000002439	ENSTNIG00000005407	ENSTNIG00000005406	chst3b (ENSTNIG00000005392)	pax2b (ENSTNIG00000005391)	ENSTNIG00000002158
Tetraodon	MODERN SPECIES	26	DUSP3 (ENSTNIG00000005957)	ENSTNIG00000005958	ENSTNIG00000005960	ENSTNIG00000005962	or70b1 (ENSTNIG00000005964)	ENSTNIG00000005965	ENSTNIG00000005966	ENSTNIG00000005967	ENSTNIG00000005567	ENSTNIG00000005968	ENSTNIG00000005969	ENSTNIG00000005970	ENSTNIG00000005637	ENSTNIG00000005971	ENSTNIG00000005972	ache (ENSTNIG00000005973) #22	ENSTNIG00000000170	ENSTNIG00000005977	ENSTNIG00000005349	ENSTNIG00000000897	ENSTNIG00000005978	glrx3 (ENSTNIG00000005979)	ENSTNIG00000005980	RNLS (ENSTNIG00000005983)	ptena (ENSTNIG00000005984)	atad1b (ENSTNIG00000005985)	ENSTNIG00000005991	ENSTNIG00000005992	ENSTNIG00000005993	ENSTNIG00000000602	hspa9 (ENSTNIG00000005994)
Fugu	MODERN SPECIES	20	mllt3 (ENSTRUG00000001366)	H2AZ1 (ENSTRUG00000033458)	ENSTRUG00000001774	senp3b (ENSTRUG00000002077)	EIF4A1 (ENSTRUG00000002188)	mpdu1b (ENSTRUG00000022800)	ENSTRUG00000022637	gal3st4 (ENSTRUG00000020160)	trappc14 (ENSTRUG00000004263)	ENSTRUG00000004421 #28	ENSTRUG00000032876	serpine1 (ENSTRUG00000004818) #16	ap1s1 (ENSTRUG00000022212) #15	ENSTRUG00000030167	ENSTRUG00000005122	ache (ENSTRUG00000005195) #22	ENSTRUG00000028003	ENSTRUG00000022100	ENSTRUG00000005895	rnaseka (ENSTRUG00000032483)	alox12 (ENSTRUG00000005975)	ENSTRUG00000006803	med11 (ENSTRUG00000023733)	ARRB2 (ENSTRUG00000007052)	cd99l2 (ENSTRUG00000024193)	mtmr1a (ENSTRUG00000007299)	mtm1 (ENSTRUG00000025085)	NAT16 (ENSTRUG00000007978) #13	siae (ENSTRUG00000008006)	ENSTRUG00000030025	btg3 (ENSTRUG00000020784)
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00940000163587.a.b.b.f	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Ballan wrasse	DUPLICATION
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	2891																ache (ENSLBEG00000020901) #22
Ballan wrasse	MODERN SPECIES	725															ENSLBEG00000002474	ache (ENSLBEG00000002254) #22	ENSLBEG00000002218	C17orf49 (ENSLBEG00000002194)	rnaseka (ENSLBEG00000002160)	alox12 (ENSLBEG00000002043)	ENSLBEG00000001947	med11 (ENSLBEG00000001918)	ARRB2 (ENSLBEG00000001876)	ENSLBEG00000001847	ENSLBEG00000001829
Ballan wrasse	MODERN SPECIES	1348																ache (ENSLBEG00000028009) #22
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00940000163587.a.b.b.f	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Perciformes	ANCESTRAL SPECIES	19	ENSGT00940000171869.C	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00940000171869.C	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Lumpfish	MODERN SPECIES	9	rbm4.3 (ENSCLMG00005016851)	ENSCLMG00005016852	TAAR1 (ENSCLMG00005016853)	mpdu1b (ENSCLMG00005016857)	ENSCLMG00005016858	MBLAC1 (ENSCLMG00005016859)	tm4sf21b (ENSCLMG00005016861)	ENSCLMG00005017035	gal3st4 (ENSCLMG00005017036)	trappc14 (ENSCLMG00005017039)	ENSCLMG00005017041 #28	serpine1 (ENSCLMG00005017042) #16	ap1s1 (ENSCLMG00005017046) #15	ENSCLMG00005017075	ENSCLMG00005017076	ache (ENSCLMG00005017077) #22	ENSCLMG00005017084	ENSCLMG00005017086	rnaseka (ENSCLMG00005017087)	alox12 (ENSCLMG00005017121)	ENSCLMG00005017643	med11 (ENSCLMG00005017645)	ARRB2 (ENSCLMG00005017655)	cd99l2 (ENSCLMG00005018350)	mtmr1a (ENSCLMG00005018372)	mtm1 (ENSCLMG00005019377)	NAT16 (ENSCLMG00005020469) #13	acox3 (ENSCLMG00005020472)	HTRA3 (ENSCLMG00005020504)	ENSCLMG00005020604	znf16l (ENSCLMG00005020606)
Stickleback	MODERN SPECIES	417									gal3st4 (ENSGACG00000000698)	trappc14 (ENSGACG00000000701)	zanl (ENSGACG00000000704) #28	serpine1 (ENSGACG00000000715) #16	ap1s1 (ENSGACG00000000721) #15	ENSGACG00000000726	ENSGACG00000000727	ache (ENSGACG00000000728) #22	ENSGACG00000000730	ENSGACG00000000731	rnaseka (ENSGACG00000000733)	alox12 (ENSGACG00000000735)	ENSGACG00000000740	med11 (ENSGACG00000000744)	ARRB2 (ENSGACG00000000745)	cd99l2 (ENSGACG00000000749)	mtmr1a (ENSGACG00000000751)	mtm1 (ENSGACG00000000753)	NAT16 (ENSGACG00000000758) #13	acox3 (ENSGACG00000000759)	HTRA3 (ENSGACG00000000768)	ENSGACG00000000770	ENSGACG00000000774
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00940000171869.C	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Pike perch	MODERN SPECIES	117																ache (ENSSLUG00000021812) #22	ENSSLUG00000021806	zgc:92664 (ENSSLUG00000021800)	rnaseka (ENSSLUG00000021795)	alox12 (ENSSLUG00000021454)	ENSSLUG00000021431	med11 (ENSSLUG00000021424)	ARRB2 (ENSSLUG00000020157)	cd99l2 (ENSSLUG00000020108)	mtmr1a (ENSSLUG00000018412)	NAT16 (ENSSLUG00000018374) #13	ENSSLUG00000018372	acox3 (ENSSLUG00000018165)	HTRA3 (ENSSLUG00000017820)	ENSSLUG00000017809	ENSSLUG00000017805
Channel bull blenny	MODERN SPECIES	9	senp3b (ENSCGOG00000015001)	eif4a1a (ENSCGOG00000015060)	sox19b (ENSCGOG00000016210)	mpdu1b (ENSCGOG00000016213)	MBLAC1 (ENSCGOG00000011333)	tm4sf21b (ENSCGOG00000011335)	ENSCGOG00000011351	gal3st4 (ENSCGOG00000011353)	trappc14 (ENSCGOG00000011359)	ENSCGOG00000011369 #28	serpine1 (ENSCGOG00000011373) #16	ap1s1 (ENSCGOG00000011380) #15	ENSCGOG00000011453	ENSCGOG00000011454	ENSCGOG00000011455	ache (ENSCGOG00000011458) #22	ENSCGOG00000011462	zgc:92664 (ENSCGOG00000011465)	rnaseka (ENSCGOG00000011467)	alox12 (ENSCGOG00000011479)	ENSCGOG00000012025	med11 (ENSCGOG00000012034)	ARRB2 (ENSCGOG00000012076)	cd99l2 (ENSCGOG00000013124)	mtmr1a (ENSCGOG00000013193)	mtm1 (ENSCGOG00000015022)	NAT16 (ENSCGOG00000016660) #13	acox3 (ENSCGOG00000016675)	HTRA3 (ENSCGOG00000017058)	ENSCGOG00000017245	znf16l (ENSCGOG00000017248)
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00940000156819.b	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00940000163587.a.b.b.f	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Gilthead seabream	MODERN SPECIES	1	senp3b (ENSSAUG00010021149)	eif4a1a (ENSSAUG00010021113)	sox19b (ENSSAUG00010021105)	mpdu1b (ENSSAUG00010021104)	ENSSAUG00010021103	MBLAC1 (ENSSAUG00010021101)	tm4sf21b (ENSSAUG00010021099)	gal3st4 (ENSSAUG00010021098)	trappc14 (ENSSAUG00010021096)	zanl (ENSSAUG00010021065) #28	ENSSAUG00010021062	serpine1 (ENSSAUG00010021060) #16	ap1s1 (ENSSAUG00010021057) #15	ENSSAUG00010021054	ENSSAUG00010021052	ache (ENSSAUG00010021049) #22	ENSSAUG00010021048	C17orf49 (ENSSAUG00010021047)	rnaseka (ENSSAUG00010021045)	alox12 (ENSSAUG00010020690)	ENSSAUG00010020667	med11 (ENSSAUG00010020660)	ARRB2 (ENSSAUG00010019726)	cd99l2 (ENSSAUG00010019696)	mtmr1a (ENSSAUG00010016406)	mtm1 (ENSSAUG00010016275)	NAT16 (ENSSAUG00010016273) #13	acox3 (ENSSAUG00010015044)	ENSSAUG00010015017	ENSSAUG00010015015	BCL6B (ENSSAUG00010015011)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	43	ENSGT00940000156996.f.a.b	ENSGT00940000156819.b	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
European seabass	MODERN SPECIES	16	ENSDLAG00005031081	ENSDLAG00005027364	ENSDLAG00005007965	eif4a1a (ENSDLAG00005008011)	sox19b (ENSDLAG00005008539)	mpdu1b (ENSDLAG00005034098)	ENSDLAG00005034420	ENSDLAG00005008563	gal3st4 (ENSDLAG00005033218)	trappc14 (ENSDLAG00005008576)	zanl (ENSDLAG00005008593) #28	serpine1 (ENSDLAG00005008658) #16	ap1s1 (ENSDLAG00005026467) #15	ENSDLAG00005034242	ENSDLAG00005008714	ENSDLAG00005008732 #22	ENSDLAG00005033888	ENSDLAG00005033159	ENSDLAG00005033151	rnaseka (ENSDLAG00005031764)	alox12 (ENSDLAG00005008788)	ENSDLAG00005009387	ENSDLAG00005009411	ENSDLAG00005009470	cd99l2 (ENSDLAG00005029547)	mtmr1a (ENSDLAG00005012043)	mtm1 (ENSDLAG00005013919)	ENSDLAG00005028662 #13	acox3 (ENSDLAG00005015243)	ENSDLAG00005015480	ENSDLAG00005020106
Large yellow croaker	MODERN SPECIES		reep5 (ENSLCRG00005022635)	hmgcs1 (ENSLCRG00005022632)	tln1 (ENSLCRG00005021926)	tpm2 (ENSLCRG00005021638)	ENSLCRG00005021625	slc25a48 (ENSLCRG00005021623)	cplx2 (ENSLCRG00005021622)	thoc3 (ENSLCRG00005021620)	ENSLCRG00005021616	ENSLCRG00005021613	PCDH12 (ENSLCRG00005021610)	ENSLCRG00005021607	ENSLCRG00005021606	ENSLCRG00005021603	ENSLCRG00005021597	ache (ENSLCRG00005021593) #22	ENSLCRG00005021591	zgc:92664 (ENSLCRG00005021587)	rnaseka (ENSLCRG00005021584)	alox12 (ENSLCRG00005021450)	ENSLCRG00005021447	ENSLCRG00005021446	tmem144b (ENSLCRG00005021444)	GASK1B (ENSLCRG00005021440)	gria2b (ENSLCRG00005019791)	glrbb (ENSLCRG00005019614)	PDGFC (ENSLCRG00005019602)	neil3 (ENSLCRG00005019575)	aga (ENSLCRG00005019565)	TENM3 (ENSLCRG00005017307)	tdo2a (ENSLCRG00005017278)
Percomorphaceae_D	ANCESTRAL SPECIES	28												ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a
Anabantaria	ANCESTRAL SPECIES	19												ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00980000200342	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b
Anabantoidei	ANCESTRAL SPECIES	22												ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00980000200342	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b
Climbing perch	MODERN SPECIES	9														ENSATEG00000003579 #15	ENSATEG00000003573	ENSATEG00000003568 #22	ENSATEG00000003560	ENSATEG00000027242	alox12 (ENSATEG00000003520)	ENSATEG00000003441	ENSATEG00000003429	ENSATEG00000003416	cd99l2 (ENSATEG00000003409)	mtmr1a (ENSATEG00000003371)	mtm1 (ENSATEG00000003296)	ENSATEG00000003274 #13	ENSATEG00000003138	senp3b (ENSATEG00000003128)	eif4a1a (ENSATEG00000003064)	sox19b (ENSATEG00000003041)	mpdu1b (ENSATEG00000003012)
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000000810	ENSBSLG00000000836	ENSBSLG00000000841	ENSBSLG00000000848	ENSBSLG00000000853	ENSBSLG00000000857	ENSBSLG00000000859	ENSBSLG00000000861	ENSBSLG00000000891	slx9 (ENSBSLG00000000966)	adarb1a (ENSBSLG00000000968)	serpine1 (ENSBSLG00000000971) #16	ap1s1 (ENSBSLG00000000974) #15	ENSBSLG00000000976	ENSBSLG00000000977	ache (ENSBSLG00000000978) #22	ENSBSLG00000000981	ENSBSLG00000000982	alox12 (ENSBSLG00000000988)	ENSBSLG00000000990	med11 (ENSBSLG00000000992)	ARRB2 (ENSBSLG00000001002)	cd99l2 (ENSBSLG00000001008)	mtmr1a (ENSBSLG00000001020)	mtm1 (ENSBSLG00000001033)	ENSBSLG00000001038	ENSBSLG00000001039	ENSBSLG00000001040	ENSBSLG00000001043	ENSBSLG00000001044	ENSBSLG00000001045
Zig-zag eel	MODERN SPECIES	9												ENSMAMG00000018149 #16	ENSMAMG00000018165	ENSMAMG00000018195	ENSMAMG00000018216	ENSMAMG00000018237 #22	ENSMAMG00000018257	ENSMAMG00000025203	ENSMAMG00000028461	rnaseka (ENSMAMG00000000281)	ENSMAMG00000026153	ENSMAMG00000000284	ENSMAMG00000000286	MED11 (ENSMAMG00000027759)	cd99l2 (ENSMAMG00000025881)	ENSMAMG00000000797	mtmr1a (ENSMAMG00000000300)	mtm1 (ENSMAMG00000000646)	ENSMAMG00000000679 #13	ENSMAMG00000024598	ENSMAMG00000000720
Carangaria	ANCESTRAL SPECIES	20									ENSGT00940000156850.a.a #28	ENSGT00390000014725.r.a	ENSGT00950000182923.B.b	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a
Pleuronectoidei	ANCESTRAL SPECIES	160															ENSGT00390000017407	ENSGT00940000157637.b #22
Turbot	MODERN SPECIES		ENSSMAG00000036163	ENSSMAG00000008861	ENSSMAG00000029151	ENSSMAG00000025799 #28	ENSSMAG00000008905	gal3st4 (ENSSMAG00000008917)	ENSSMAG00000008934 #16	ENSSMAG00000035338	ENSSMAG00000023216	ENSSMAG00000008981	ENSSMAG00000009017	ENSSMAG00000009084	ENSSMAG00000009089	ENSSMAG00000021486	ENSSMAG00000009095	ENSSMAG00000003841 #22	ENSSMAG00000003790	ENSSMAG00000003781	ENSSMAG00000003777	ENSSMAG00000003768	ENSSMAG00000003759	rwdd (ENSSMAG00000003737)	ENSSMAG00000003714	ENSSMAG00000003983	ENSSMAG00000004009	ENSSMAG00000004036	ENSSMAG00000004253	ENSSMAG00000004263	ENSSMAG00000023417	ENSSMAG00000004288	ENSSMAG00000004291
Tongue sole	MODERN SPECIES		H2BC11 (ENSCSEG00000014694)	ENSCSEG00000014697	ENSCSEG00000014702	ENSCSEG00000014714	ENSCSEG00000014719	cd248a (ENSCSEG00000014734)	ENSCSEG00000014741	ENSCSEG00000014756	MBLAC1 (ENSCSEG00000014784)	mpdu1b (ENSCSEG00000014788)	sox19b (ENSCSEG00000014795)	eif4a1a (ENSCSEG00000014807)	senp3b (ENSCSEG00000014837)	acox3 (ENSCSEG00000014849)	ENSCSEG00000014882	ache (ENSCSEG00000014888) #22	rgn (ENSCSEG00000014899)	lama1 (ENSCSEG00000014941)	ENSCSEG00000015125	ENSCSEG00000015134	ENSCSEG00000015144	ENSCSEG00000015174	ENSCSEG00000015187	ENSCSEG00000015203	ttc1 (ENSCSEG00000015243)	pfdn1 (ENSCSEG00000006737)	mat2b (ENSCSEG00000006745)	MOGAT1 (ENSCSEG00000006754) ##12	ENSCSEG00000006771	ENSCSEG00000006787	ENSCSEG00000006799
Carangaria_A	ANCESTRAL SPECIES	41															ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a
Seriola	ANCESTRAL SPECIES	64																ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a
Greater amberjack	MODERN SPECIES	49															ENSSDUG00000005673	ache (ENSSDUG00000005641) #22	ENSSDUG00000005620	ENSSDUG00000005601	rnaseka (ENSSDUG00000005556)	alox12 (ENSSDUG00000005507)	ENSSDUG00000005447	med11 (ENSSDUG00000005439)	ARRB2 (ENSSDUG00000005410)	cd99l2 (ENSSDUG00000005396)	mtmr1a (ENSSDUG00000005247)	mtm1 (ENSSDUG00000005187)	NAT16 (ENSSDUG00000005153) #13	acox3 (ENSSDUG00000004996)	senp3b (ENSSDUG00000004965)	eif4a1a (ENSSDUG00000004913)	sox19b (ENSSDUG00000004898)
Yellowtail amberjack	MODERN SPECIES	3056																ache (ENSSLDG00000011363) #22	ENSSLDG00000011416	ENSSLDG00000011440	rnaseka (ENSSLDG00000011460)	alox12 (ENSSLDG00000011494)	ENSSLDG00000011586	med11 (ENSSLDG00000011624)	ARRB2 (ENSSLDG00000011643)	mtmr1a (ENSSLDG00000011677)	mtm1 (ENSSLDG00000011733)	NAT16 (ENSSLDG00000011781) #13	acox3 (ENSSLDG00000011817)	senp3b (ENSSLDG00000011905)	eif4a1a (ENSSLDG00000011941)	sox19b (ENSSLDG00000012020)	mpdu1b (ENSSLDG00000012044)
Barramundi perch	MODERN SPECIES	600														taf6l (ENSLCAG00010016197)	ENSLCAG00010016195	ache (ENSLCAG00010016164) #22
Ovalentaria	ANCESTRAL SPECIES	29	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00990000211448	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Atherinomorphae	ANCESTRAL SPECIES	58			ENSGT00940000153783.b.a.b	ENSGT00940000156309.B.h	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00390000004124.j	ENSGT00940000156996.f.a.b	ENSGT00940000156819.b	ENSGT01100000263495.E	ENSGT00530000063812.C	ENSGT00940000159423	ENSGT00390000016398.a #13	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a
Cyprinodontiformes	ANCESTRAL SPECIES	29	ENSGT00940000167512	ENSGT00390000010184	ENSGT00940000153783.b.a.b	ENSGT00940000156309.B.h	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00940000155191.b	ENSGT00390000004124.j	ENSGT00940000156996.f.a.b	ENSGT01100000263495.E	ENSGT00530000063812.C	ENSGT00940000159423	ENSGT00390000016398.a #13	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a
Aplocheiloidei	ANCESTRAL SPECIES	49	ENSGT00940000159423	ENSGT00390000016398.a #13	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00940000155191.b	ENSGT00390000004124.j	ENSGT00940000156996.f.a.b	ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00390000010184	ENSGT00940000167512	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00940000155078.a.a	ENSGT00940000161027.b	ENSGT00940000164485.a.a	ENSGT00940000164485.a.b	ENSGT00940000166658.b	ENSGT00390000014237
Turquoise killifish	MODERN SPECIES	1619	zeb2b (ENSNFUG00015011080)	ENSNFUG00015011163	ENSNFUG00015011167	ACVR2A (ENSNFUG00015011205)	MBD5 (ENSNFUG00015011296)	FAM171B (ENSNFUG00015011440)	ENSNFUG00015011470	ENSNFUG00015012170	eed (ENSNFUG00015012208)	ENSNFUG00015012237	ENSNFUG00015012335	gpd2 (ENSNFUG00015012357)	NR4A2 (ENSNFUG00015012524)	ENSNFUG00015012691	znf16l (ENSNFUG00015012724)	ache (ENSNFUG00015012736) #22	BX005022.1 (ENSNFUG00015012742)	cd248a (ENSNFUG00015012749)	RCE1A (ENSNFUG00015012764)	ALOX12 (ENSNFUG00015012795)	senp3b (ENSNFUG00015013061)	EIF4A1 (ENSNFUG00015004769)	MED11 (ENSNFUG00015005054)	ENSNFUG00015005064	PELI3 (ENSNFUG00015005089)	ENSNFUG00015005128	CU570987.1 (ENSNFUG00015005274)	ENSNFUG00015005307	RBM4.1 (ENSNFUG00015005371)	RBM4.2 (ENSNFUG00015005382)	map4k2 (ENSNFUG00015005419)
Mangrove rivulus	MODERN SPECIES	98	NAT16 (ENSKMAG00000007688) #13	mtm1 (ENSKMAG00000007620)	mtmr1a (ENSKMAG00000007533)	cd99l2 (ENSKMAG00000007499)	sox19b (ENSKMAG00000007484)	mpdu1b (ENSKMAG00000007466)	MBLAC1 (ENSKMAG00000007460)	tm4sf21b (ENSKMAG00000007451)	gal3st4 (ENSKMAG00000007439)	ENSKMAG00000007402	zanl (ENSKMAG00000007326) #28	serpine1 (ENSKMAG00000007286) #16	ap1s1 (ENSKMAG00000007265) #15	ENSKMAG00000007251	ENSKMAG00000007231	ache (ENSKMAG00000007203) #22	ENSKMAG00000007177	ENSKMAG00000007164	alox12 (ENSKMAG00000007130)	RCE1 (ENSKMAG00000007063)	cd248a (ENSKMAG00000007009)	senp3b (ENSKMAG00000006978)	eif4a1a (ENSKMAG00000006928)	med11 (ENSKMAG00000006910)	ENSKMAG00000006885	PELI3 (ENSKMAG00000006836)	ENSKMAG00000006810	ENSKMAG00000006641	rbm4.1 (ENSKMAG00000006556)	rbm4.2 (ENSKMAG00000006528)	map4k2 (ENSKMAG00000006380)
Cyprinodontoidei	ANCESTRAL SPECIES	39	ENSGT00940000167512	ENSGT00390000010184	ENSGT00940000153783.b.a.b	ENSGT00940000156309.B.h	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00940000155191.b	ENSGT00390000004124.j	ENSGT00940000156996.f.a.b	ENSGT01100000263495.E	ENSGT00940000159423	ENSGT00390000016398.a #13	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a
Poeciliinae	ANCESTRAL SPECIES	28	ENSGT00940000167512	ENSGT00390000010184	ENSGT00940000153783.b.a.b	ENSGT00940000156309.B.h	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00940000156850.a.a #28	ENSGT01030000235415	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00940000155191.b	ENSGT00390000004124.j	ENSGT00940000156996.f.a.b	ENSGT01100000263495.E	ENSGT00940000159423	ENSGT00390000016398.a #13	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000174504.A.c	ENSGT00950000182968.d.a.a.b	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.b.b.c	ENSGT00940000162676.a.b.b.b.a.j.a.b	ENSGT00940000162676.a.b.b.b.a.j.b
Poecilia	ANCESTRAL SPECIES	40	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00940000153783.b.a.b	ENSGT00940000156309.B.h	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00940000155191.b	ENSGT00390000004124.j	ENSGT00940000156996.f.a.b	ENSGT01100000263495.E	ENSGT00940000159423	ENSGT00390000016398.a #13	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000174504.A.c	ENSGT00950000182968.d.a.a.b	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.b.b.c	ENSGT00940000162676.a.b.b.b.a.j.a.b	ENSGT00950000182968.d.a.a.a.c.g.a
NAME_6	ANCESTRAL SPECIES	37	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00940000153783.b.a.b	ENSGT00940000156309.B.h	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00940000155191.b	ENSGT00390000004124.j	ENSGT00940000156996.f.a.b	ENSGT01100000263495.E	ENSGT00940000159423	ENSGT00390000016398.a #13	ENSGT00940000157029	ENSGT00940000153669.b	ENSGT00940000154344.a	ENSGT00940000174504.A.c	ENSGT00950000182968.d.a.a.b	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.b.b.c	ENSGT00940000162676.a.b.b.b.a.j.a.b	ENSGT00940000162676.a.b.b.b.a.j.b
Amazon molly	MODERN SPECIES	464	PELI3 (ENSPFOG00000012553)	ENSPFOG00000012545	med11 (ENSPFOG00000012528)	eif4a1a (ENSPFOG00000012406)	senp3b (ENSPFOG00000012403)	sox19b (ENSPFOG00000012387)	mpdu1b (ENSPFOG00000012321)	MBLAC1 (ENSPFOG00000012312)	tm4sf21b (ENSPFOG00000012257)	gal3st4 (ENSPFOG00000012214)	zanl (ENSPFOG00000022872) #28	serpine1 (ENSPFOG00000012100) #16	ap1s1 (ENSPFOG00000022297) #15	ENSPFOG00000024410	ENSPFOG00000012045	ache (ENSPFOG00000011958) #22	ENSPFOG00000011951	alox12 (ENSPFOG00000011820)	RCE1 (ENSPFOG00000011728)	cd248a (ENSPFOG00000020147)	znf16l (ENSPFOG00000023596)	acox3 (ENSPFOG00000011546)	NAT16 (ENSPFOG00000011517) #13
Sailfin molly	MODERN SPECIES	14																ache (ENSPLAG00000007171) #22	ENSPLAG00000007146	alox12 (ENSPLAG00000007116)	RCE1 (ENSPLAG00000000610)	cd248a (ENSPLAG00000000150)	znf16l (ENSPLAG00000007025)	acox3 (ENSPLAG00000007019)	NAT16 (ENSPLAG00000006969) #13	mtm1 (ENSPLAG00000006939)	mtmr1a (ENSPLAG00000006845)	cd99l2 (ENSPLAG00000006801)	ENSPLAG00000006795	ENSPLAG00000006789	ENSPLAG00000006779	ENSPLAG00000006743	ENSPLAG00000006676
Guppy	MODERN SPECIES	448	PELI3 (ENSPREG00000003578)	ENSPREG00000003566	med11 (ENSPREG00000003552)	eif4a1a (ENSPREG00000003519)	senp3b (ENSPREG00000003472)	sox19b (ENSPREG00000003440)	mpdu1b (ENSPREG00000003400)	MBLAC1 (ENSPREG00000003384)	tm4sf21b (ENSPREG00000003355)	gal3st4 (ENSPREG00000003346)	ENSPREG00000003269 #28	serpine1 (ENSPREG00000003190) #16	ap1s1 (ENSPREG00000003167) #15	ENSPREG00000003159	ENSPREG00000003140	ache (ENSPREG00000003092) #22	ENSPREG00000003076	ENSPREG00000003061	alox12 (ENSPREG00000002997)	RCE1 (ENSPREG00000002959)	cd248a (ENSPREG00000002949)	znf16l (ENSPREG00000002943)	acox3 (ENSPREG00000002906)	ENSPREG00000002886 #13	mtm1 (ENSPREG00000002855)	mtmr1a (ENSPREG00000002794)	cd99l2 (ENSPREG00000002781)	ENSPREG00000002767	ENSPREG00000002763	ENSPREG00000002754	ENSPREG00000002631
Platyfish	MODERN SPECIES	5	sox19b (ENSXMAG00000008210)	mpdu1b (ENSXMAG00000024271)	ENSXMAG00000008215	tm4sf21b (ENSXMAG00000008218)	gal3st4 (ENSXMAG00000023643)	ENSXMAG00000008231 #28	ENSXMAG00000020998	serpine1 (ENSXMAG00000011952) #16	ap1s1 (ENSXMAG00000011931) #15	ENSXMAG00000025916	ENSXMAG00000027683	ENSXMAG00000025743	ENSXMAG00000023830	ENSXMAG00000023814	ENSXMAG00000026697	ache (ENSXMAG00000011907) #22	ENSXMAG00000021450	alox12 (ENSXMAG00000011887)	RCE1 (ENSXMAG00000024993)	cd248a (ENSXMAG00000011874)	znf16l (ENSXMAG00000026931)	acox3 (ENSXMAG00000011846)	NAT16 (ENSXMAG00000011841) #13	mtm1 (ENSXMAG00000011794)	mtmr1a (ENSXMAG00000011764)	cd99l2 (ENSXMAG00000011759)	ENSXMAG00000011757	ENSXMAG00000011756	ENSXMAG00000011754	ENSXMAG00000028419	ENSXMAG00000011726
NAME_4	ANCESTRAL SPECIES	593																ENSGT00940000157637.b #22	ENSGT00940000155191.b
Mummichog	MODERN SPECIES	717																ache (ENSFHEG00000008565) #22	alox12 (ENSFHEG00000008630)
Sheepshead minnow	MODERN SPECIES	2071																ache (ENSCVAG00000019584) #22
Oryzias	ANCESTRAL SPECIES	42	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000153783.b.a.b	ENSGT00940000156309.B.h	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00390000004124.j	ENSGT00940000177362.B	ENSGT00940000175203.A	ENSGT00940000177362.A	ENSGT00940000156996.f.a.b	ENSGT00940000156819.b	ENSGT01100000263495.E.d	ENSGT00530000063812.C	ENSGT00940000159570.b.b	ENSGT00940000159423	ENSGT00390000016398.a #13	ENSGT00940000157029
Oryzias_b	ANCESTRAL SPECIES	37	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000153783.b.a.b	ENSGT00940000156309.B.h	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00390000004124.j	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT00940000177362.B
Indian medaka	MODERN SPECIES	19	grpel1 (ENSOMEG00000003469)	SORCS2 (ENSOMEG00000003445)	ENSOMEG00000003380	eif4a1a (ENSOMEG00000003369)	senp3b (ENSOMEG00000003315)	sox19b (ENSOMEG00000003278)	mpdu1b (ENSOMEG00000003258)	MBLAC1 (ENSOMEG00000003231)	tm4sf21b (ENSOMEG00000003220)	gal3st4 (ENSOMEG00000003202)	zanl (ENSOMEG00000003175) #28	serpine1 (ENSOMEG00000003069) #16	ap1s1 (ENSOMEG00000003056) #15	ENSOMEG00000003043	ENSOMEG00000003040	ache (ENSOMEG00000003023) #22	ENSOMEG00000003001	rnaseka (ENSOMEG00000002992)	RCE1 (ENSOMEG00000002979)	alox12 (ENSOMEG00000002961)	ENSOMEG00000002930	ENSOMEG00000002925	ENSOMEG00000002911	ENSOMEG00000002908	ENSOMEG00000002903	ENSOMEG00000002900	ENSOMEG00000002889	ENSOMEG00000002865	ENSOMEG00000002861	ENSOMEG00000022431	ENSOMEG00000022400
Javanese ricefish	MODERN SPECIES	9	ENSOJAG00000003560	grpel1 (ENSOJAG00000003577)	SORCS2 (ENSOJAG00000003835)	eif4a1a (ENSOJAG00000004387)	senp3b (ENSOJAG00000004753)	sox19b (ENSOJAG00000004840)	mpdu1b (ENSOJAG00000004859)	MBLAC1 (ENSOJAG00000004881)	tm4sf21b (ENSOJAG00000004900)	gal3st4 (ENSOJAG00000004997)	serpine1 (ENSOJAG00000005160) #16	ENSOJAG00000005195	ap1s1 (ENSOJAG00000005225) #15	ENSOJAG00000005366	ENSOJAG00000005369	ache (ENSOJAG00000005403) #22	ENSOJAG00000005518	rnaseka (ENSOJAG00000005526)	ENSOJAG00000005544	alox12 (ENSOJAG00000005573)	RCE1 (ENSOJAG00000005594)	ENSOJAG00000005681	ENSOJAG00000005711	ENSOJAG00000005738	ENSOJAG00000005742	cd248a (ENSOJAG00000005764)	SSTR4 (ENSOJAG00000005805)	znf16l (ENSOJAG00000005834)	ENSOJAG00000005899	ENSOJAG00000005935	ENSOJAG00000006030
Oryzias_a	ANCESTRAL SPECIES	66	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000153783.b.a.b	ENSGT00940000156309.B.h	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00390000004124.j
Chinese medaka	DUPLICATION
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	150													serpine1 (ENSOSIG00000018239) #16	ap1s1 (ENSOSIG00000018247) #15	ENSOSIG00000018310	ache (ENSOSIG00000018336) #22
Chinese medaka	MODERN SPECIES	3159																ENSOSIG00000001919 #22
Chinese medaka	MODERN SPECIES	3031																ache (ENSOSIG00000009226) #22
Japanese Medaka HdrR	MODERN SPECIES	9	SORCS2 (ENSORLG00000010673)	eif4a1a (ENSORLG00000010659)	senp3b (ENSORLG00000010643)	sox19b (ENSORLG00000029654)	mpdu1b (ENSORLG00000010635)	MBLAC1 (ENSORLG00000010613)	tm4sf21b (ENSORLG00000026793)	gal3st4 (ENSORLG00000010608)	zanl (ENSORLG00000010593) #28	serpine1 (ENSORLG00000010473) #16	ap1s1 (ENSORLG00000010395) #15	ENSORLG00000022083	ENSORLG00000010375	ENSORLG00000025869	ENSORLG00000024959	ache (ENSORLG00000010371) #22	ENSORLG00000010357	ENSORLG00000026361	alox12 (ENSORLG00000010331)	RCE1 (ENSORLG00000025776)	ENSORLG00000024539	ENSORLG00000025421	ENSORLG00000020402	ENSORLG00000028431	ENSORLG00000010274	ENSORLG00000025168	ENSORLG00000027880	ENSORLG00000022280	ENSORLG00000022461	ENSORLG00000024055	ENSORLG00000026880
Ovalentaria_B	ANCESTRAL SPECIES	44		ENSGT00940000156309.B.h	ENSGT00940000153783.b.a.b	ENSGT00940000165992.a.a	ENSGT00940000153916.A.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00990000211448	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Pomacentridae	ANCESTRAL SPECIES	74	ENSGT00940000158194	ENSGT00950000182899.C.b	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT00940000167160	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT01100000263495.E
Pomacentridae_A	ANCESTRAL SPECIES	53	ENSGT00940000158194	ENSGT00950000182899.C.b	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT00940000167160	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT00940000154446.b.a.a.a.b
Amphiprion	ANCESTRAL SPECIES	74	ENSGT00940000158194	ENSGT00950000182899.C.b	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT00940000167160	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT00950000182923.B.b	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00940000159570.b.b	ENSGT00530000063812.C	ENSGT00940000154446.b.a.a.a.b
Orange clownfish	MODERN SPECIES	15	ENSAPEG00000010615	ing2 (ENSAPEG00000010625)	ENSAPEG00000010651	si:ch211-212k18.8 (ENSAPEG00000010660)	slx1b (ENSAPEG00000010675)	zgc:112271 (ENSAPEG00000010688)	ENSAPEG00000010704	ENSAPEG00000010852	gal3st4 (ENSAPEG00000010868)	trappc14 (ENSAPEG00000010873)	ENSAPEG00000010888 #28	serpine1 (ENSAPEG00000010907) #16	ap1s1 (ENSAPEG00000010928) #15	ENSAPEG00000010950	ENSAPEG00000010997	ache (ENSAPEG00000011022) #22	ENSAPEG00000011057	C17orf49 (ENSAPEG00000011087)	rnaseka (ENSAPEG00000011121)	alox12 (ENSAPEG00000011165)	ENSAPEG00000011332	med11 (ENSAPEG00000011444)	ARRB2 (ENSAPEG00000011466)	cd99l2 (ENSAPEG00000011484)	mtmr1a (ENSAPEG00000011514)	mtm1 (ENSAPEG00000011694)	NAT16 (ENSAPEG00000011764) #13	acox3 (ENSAPEG00000011800)	HTRA3 (ENSAPEG00000011874)	ENSAPEG00000011916	ENSAPEG00000011931
Clown anemonefish	MODERN SPECIES	3591															ENSAOCG00000012420	ache (ENSAOCG00000012470) #22	ENSAOCG00000012496	C17orf49 (ENSAOCG00000012522)	rnaseka (ENSAOCG00000012548)	alox12 (ENSAOCG00000012583)	ENSAOCG00000012693	med11 (ENSAOCG00000012714)	ARRB2 (ENSAOCG00000012772)	cd99l2 (ENSAOCG00000002208)	mtmr1a (ENSAOCG00000012939)	mtm1 (ENSAOCG00000013029)	NAT16 (ENSAOCG00000013047) #13	acox3 (ENSAOCG00000013128)	HTRA3 (ENSAOCG00000013160)	ENSAOCG00000013187	ENSAOCG00000013200
Spiny chromis	MODERN SPECIES	1895																ache (ENSAPOG00000011569) #22	ENSAPOG00000011543	C17orf49 (ENSAPOG00000011517)	rnaseka (ENSAPOG00000011489)
Bicolor damselfish	MODERN SPECIES	792																ache (ENSSPAG00000023154) #22	ENSSPAG00000023163	C17orf49 (ENSSPAG00000023166)	rnaseka (ENSSPAG00000023168)	alox12 (ENSSPAG00000023174)	ENSSPAG00000023180	med11 (ENSSPAG00000023190)	ARRB2 (ENSSPAG00000023194)	cd99l2 (ENSSPAG00000023198)	mtmr1a (ENSSPAG00000023208)	mtm1 (ENSSPAG00000023248)	NAT16 (ENSSPAG00000023268) #13	acox3 (ENSSPAG00000023275)	HTRA3 (ENSSPAG00000023299)	ENSSPAG00000023308	znf16l (ENSSPAG00000023322)
Cichlidae	ANCESTRAL SPECIES	31	ENSGT00940000157258	ENSGT00940000164485.a.a	ENSGT00940000164485.a.b	ENSGT00940000166658.b	ENSGT00390000014237	ENSGT00940000157482.e	ENSGT00600000084617	ENSGT00650000094910	ENSGT00390000005147	ENSGT00940000177929	ENSGT00940000159589	ENSGT01030000234573.B.c.b.b	ENSGT00940000166499	ENSGT00640000091486.a	ENSGT00940000161027.b	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.b.a.b	ENSGT00940000173415	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00530000063812.C	ENSGT00940000155078.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00940000167160	ENSGT00950000183148.b.a.g.a	ENSGT00940000157258	ENSGT00940000164485.a.a	ENSGT00940000164485.a.b	ENSGT00940000166658.b	ENSGT00390000014237	ENSGT00940000157482.e	ENSGT00600000084617	ENSGT00390000005147	ENSGT00940000159589	ENSGT01030000234573.B.c.b.b	ENSGT00940000166499	ENSGT00640000091486.a	ENSGT00940000161027.b	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00530000063812.C	ENSGT00940000155078.a.a	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00390000004124.j
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	47						ENSGT00940000166658.b	ENSGT00390000014237	ENSGT00940000157482.e	ENSGT00600000084617	ENSGT00390000005147	ENSGT00940000159589	ENSGT01030000234573.B.c.b.b	ENSGT00940000166499	ENSGT00640000091486.a	ENSGT00940000161027.b	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00390000016398.a #13	ENSGT00940000159423	ENSGT00530000063812.C	ENSGT00940000155078.a.a	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00390000004124.j
Haplochromini	ANCESTRAL SPECIES	85						ENSGT00940000166658.b	ENSGT00390000014237	ENSGT00940000157482.e	ENSGT00600000084617	ENSGT00390000005147	ENSGT00940000159589	ENSGT01030000234573.B.c.b.b	ENSGT00940000166499	ENSGT00640000091486.a	ENSGT00940000161027.b	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184
Burton s mouthbrooder	MODERN SPECIES	1828																ENSHBUG00000005564 #22
Haplochromini_A	ANCESTRAL SPECIES	90						ENSGT00940000166658.b	ENSGT00390000014237	ENSGT00940000157482.e	ENSGT00600000084617	ENSGT00390000005147	ENSGT00940000159589	ENSGT01030000234573.B.c.b.b	ENSGT00940000166499	ENSGT00640000091486.a	ENSGT00940000161027.b	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512	ENSGT00390000010184
Haplochromini_B	ANCESTRAL SPECIES	110						ENSGT00940000166658.b	ENSGT00390000014237	ENSGT00940000157482.e	ENSGT00600000084617	ENSGT00390000005147	ENSGT00940000159589	ENSGT01030000234573.B.c.b.b	ENSGT00940000166499	ENSGT00640000091486.a	ENSGT00940000161027.b	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00940000167512
Zebra mbuna	MODERN SPECIES	22	avil (ENSMZEG00005022391)	olfml3b (ENSMZEG00005022383)	cdk2 (ENSMZEG00005022380)	pmela (ENSMZEG00005022375)	prph (ENSMZEG00005022372)	timeless (ENSMZEG00005022364)	ENSMZEG00005022356	MMP19 (ENSMZEG00005022352)	ENSMZEG00005022348	ecsit (ENSMZEG00005022346)	EML3 (ENSMZEG00005022341)	mta2 (ENSMZEG00005022337)	cth1 (ENSMZEG00005022335)	taf6l (ENSMZEG00005022333)	ENSMZEG00005022324	ache (ENSMZEG00005022317) #22	ENSMZEG00005022315	zgc:92664 (ENSMZEG00005022307)	rnaseka (ENSMZEG00005022305)	alox12 (ENSMZEG00005022301)	ENSMZEG00005022289
Eastern happy	MODERN SPECIES	15	mtm1 (ENSACLG00000013945)	mtmr1a (ENSACLG00000014021)	ENSACLG00000014451	ENSACLG00000014563	map4k2 (ENSACLG00000014592)	map4k2 (ENSACLG00000014675)	men1 (ENSACLG00000014919)	rtn3 (ENSACLG00000015138)	ENSACLG00000015205	ecsit (ENSACLG00000015215)	EML3 (ENSACLG00000015254)	mta2 (ENSACLG00000015319)	cth1 (ENSACLG00000015353)	taf6l (ENSACLG00000015366)	ENSACLG00000015444	ache (ENSACLG00000015596) #22	ENSACLG00000015633	ENSACLG00000015652	zgc:92664 (ENSACLG00000015740)	rnaseka (ENSACLG00000015755)	alox12 (ENSACLG00000015780)	ENSACLG00000015863	cd99l2 (ENSACLG00000015931)	ENSACLG00000015953	ENSACLG00000015978	ENSACLG00000015995	ENSACLG00000016063	ENSACLG00000016170	ENSACLG00000016205	ENSACLG00000016486	ENSACLG00000016502
P. nyererei	MODERN SPECIES	687						ENSPNYG00000016448	men1 (ENSPNYG00000016460)	rtn3 (ENSPNYG00000016493)	ENSPNYG00000016537	ecsit (ENSPNYG00000016606)	EML3 (ENSPNYG00000016642)	mta2 (ENSPNYG00000016682)	cth1 (ENSPNYG00000016705)	taf6l (ENSPNYG00000016737)	ENSPNYG00000016812	ache (ENSPNYG00000017007) #22	ENSPNYG00000017021	ENSPNYG00000017072	rnaseka (ENSPNYG00000017110)	alox12 (ENSPNYG00000017134)	ENSPNYG00000017205	med11 (ENSPNYG00000017259)
Lyretail cichlid	MODERN SPECIES	556																ache (ENSNBRG00000002532) #22	ENSNBRG00000002557	ENSNBRG00000002570	ENSNBRG00000002615	rnaseka (ENSNBRG00000002640)	alox12 (ENSNBRG00000002664)	ENSNBRG00000002714	med11 (ENSNBRG00000002736)	cd99l2 (ENSNBRG00000002752)	mtmr1a (ENSNBRG00000002759)	mtm1 (ENSNBRG00000002808)	NAT16 (ENSNBRG00000002848) #13
Nile tilapia	MODERN SPECIES	15	pygmb (ENSONIG00000015719)	sf1 (ENSONIG00000015728)	rbm4.1 (ENSONIG00000015730)	rbm4.2 (ENSONIG00000032681)	ENSONIG00000039105	map4k2 (ENSONIG00000003805)	men1 (ENSONIG00000003810)	rtn3 (ENSONIG00000003815)	ENSONIG00000003819	ecsit (ENSONIG00000003820)	EML3 (ENSONIG00000003822)	mta2 (ENSONIG00000003831)	cth1 (ENSONIG00000032358)	taf6l (ENSONIG00000003838)	ENSONIG00000035569	ache (ENSONIG00000003842) #22	ENSONIG00000021319	zgc:92664 (ENSONIG00000003855)	rnaseka (ENSONIG00000003861)	alox12 (ENSONIG00000003863)	ENSONIG00000003872	med11 (ENSONIG00000030964)	cd99l2 (ENSONIG00000038655)	mtmr1a (ENSONIG00000003877)	mtm1 (ENSONIG00000003883)	nat16 (ENSONIG00000003888) #13	acox3 (ENSONIG00000003889)	ENSONIG00000003891	ENSONIG00000036092	ENSONIG00000032545	ENSONIG00000003580
Midas cichlid	MODERN SPECIES	451	sf1 (ENSACIG00000016514)	rbm4.1 (ENSACIG00000016482)	rbm4.2 (ENSACIG00000016472)	map4k2 (ENSACIG00000016408)	men1 (ENSACIG00000016274)	rtn3 (ENSACIG00000016217)	ENSACIG00000016191	ENSACIG00000016179	ecsit (ENSACIG00000016139)	ENSACIG00000016122	EML3 (ENSACIG00000016067)	mta2 (ENSACIG00000016034)	cth1 (ENSACIG00000016026)	taf6l (ENSACIG00000015997)	ENSACIG00000015867	ache (ENSACIG00000015851) #22	ENSACIG00000015831	ENSACIG00000015814	rnaseka (ENSACIG00000015798)	alox12 (ENSACIG00000015706)
Pinecone sodierfish	MODERN SPECIES	9	ENSMMDG00005010909	ENSMMDG00005010908	ENSMMDG00005010905	MAP3K11 (ENSMMDG00005010901)	drap1 (ENSMMDG00005010899)	zgc:63470 (ENSMMDG00005010895)	rela (ENSMMDG00005010771)	ENSMMDG00005010148	SLC29A2 (ENSMMDG00005010045)	ENSMMDG00005010042	kiaa0232 (ENSMMDG00005010040)	TBC1D14 (ENSMMDG00005009054)	ENSMMDG00005009031	NAT16 (ENSMMDG00005009025) #13	ENSMMDG00005009018	ache (ENSMMDG00005009016) #22	ENSMMDG00005009014	zgc:92664 (ENSMMDG00005009010)	rnaseka (ENSMMDG00005009009)	ENSMMDG00005009005	ENSMMDG00005009001	alox12 (ENSMMDG00005008875)	ENSMMDG00005008855	med11 (ENSMMDG00005008849)	ARRB2 (ENSMMDG00005008797)	hmgb3a (ENSMMDG00005008786)	mtmr1a (ENSMMDG00005008738)	mtm1 (ENSMMDG00005001892)	ccr12a (ENSMMDG00005001607)	ccr12a (ENSMMDG00005001600)	ccr12a (ENSMMDG00005001595)
Cod	MODERN SPECIES	8		ENSGMOG00000031711	ENSGMOG00000032623	ENSGMOG00000030901	ENSGMOG00000001905	ENSGMOG00000036988	ENSGMOG00000028891	ENSGMOG00000010499	ENSGMOG00000023726	ENSGMOG00000010496	ENSGMOG00000023291	ENSGMOG00000034090	ENSGMOG00000036646	ENSGMOG00000018828	ENSGMOG00000025797	ENSGMOG00000013350 #22	ENSGMOG00000031042	ENSGMOG00000030988	ENSGMOG00000024189	STIM2 (ENSGMOG00000017713)	tbc1d19 (ENSGMOG00000006234)	ENSGMOG00000022554	CCKAR (ENSGMOG00000006226)	RBPJ (ENSGMOG00000006156)	ENSGMOG00000025836	smim20 (ENSGMOG00000024869)	ENSGMOG00000013695	ENSGMOG00000013682	ENSGMOG00000013667	ENSGMOG00000034044	ENSGMOG00000013509
Protacanthopterygii	ANCESTRAL SPECIES	61	ENSGT00940000163587.a.b.b.f	ENSGT00390000016193	ENSGT01030000234590.B.a.a.e.b	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00950000182923.B.b	ENSGT00990000211448	ENSGT00390000014725.r.a	ENSGT00940000156850.a.a #28	ENSGT00940000160621 #16	ENSGT00970000193372.a.b #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT01030000234621.D.c	ENSGT00390000014721.c.a.a	ENSGT00390000009664.a	ENSGT00940000155191.b.a	ENSGT00940000155191.b.b	ENSGT00940000167512	ENSGT00390000010184	ENSGT00950000182887.C.a.a.a.b.a	ENSGT00940000153299.a.a	ENSGT00940000154344.a	ENSGT00940000153669.b	ENSGT00940000157029	ENSGT00730000111366	ENSGT00940000157094	ENSGT00940000164076.a.a.e
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	58	ENSGT00940000153783.b.a.a.b.a.a	ENSGT00940000165992.a.a.c	ENSGT00940000153916.A.b.f	ENSGT01030000234590.B.a.a.e.b.e	ENSGT01040000240444.A.a.b.a	ENSGT00940000164578.a.b.e	ENSGT00950000182923.B.b.k	ENSGT00390000014725.r.a.g	ENSGT00940000156850.a.a.e #28	ENSGT00940000160621.q #16	ENSGT00970000193372.a.b.jb.a #15	ENSGT00910000144784.a.f	ENSGT00390000016398.b #13	ENSGT00390000016398.a.a #13	ENSGT00390000017407	ENSGT00940000157637.b.i #22	ENSGT01030000234621.D.c.e	ENSGT00390000014721.c.a.a.b	ENSGT00390000009664.a.i.b	ENSGT00940000155191.b.a	ENSGT00940000167512.c	ENSGT00390000010184.o	ENSGT00950000182887.C.a.a.a.b.a.a	ENSGT00940000153299.a.a.d	ENSGT00940000154344.a.f	ENSGT00940000153669.b.r	ENSGT00990000210653	ENSGT00940000157094.b	ENSGT00940000164076.a.a.e	ENSGT00940000162034	ENSGT00940000160883.b.e
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00940000153783.b.a.a.b.a.a	ENSGT00940000165992.a.a.c	ENSGT00940000153916.A.b.f	ENSGT01030000234590.B.a.a.e.b.e	ENSGT01040000240444.A.a.b.a	ENSGT00940000164578.a.b.e	ENSGT00950000182923.B.b.k	ENSGT00390000014725.r.a.g	ENSGT00940000156850.a.a.e #28	ENSGT00940000160621.q #16	ENSGT00970000193372.a.b.jb.a #15	ENSGT00910000144784.a.f	ENSGT00390000016398.b #13	ENSGT00390000016398.a.a #13	ENSGT00390000017407	ENSGT00940000157637.b.i #22	ENSGT01030000234621.D.c.e	ENSGT00390000014721.c.a.a.b	ENSGT00390000009664.a.i.b	ENSGT00940000155191.b.a	ENSGT00730000111225	ENSGT00940000167512.c	ENSGT00390000010184.o	ENSGT00950000182887.C.a.a.a.b.a.a	ENSGT00940000153299.a.a.d	ENSGT00940000154344.a.f	ENSGT00940000153669.b.r	ENSGT00940000157029.n	ENSGT00730000111366.o	ENSGT00990000210653	ENSGT00940000157094.b
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000165992.a.a.c	ENSGT00940000153916.A.b.f	ENSGT01030000234590.B.a.a.e.b.e.b	ENSGT01030000234590.B.a.a.e.b.e.a	ENSGT01040000240444.A.a.b.a	ENSGT00940000164578.a.b.e	ENSGT00950000182923.B.b.k	ENSGT00390000014725.r.a.g	ENSGT00940000156850.a.a.e #28	ENSGT00940000160621.q #16	ENSGT00970000193372.a.b.jb.a #15	ENSGT00910000144784.a.f	ENSGT00390000016398.b #13	ENSGT00390000016398.a.a #13	ENSGT00390000017407	ENSGT00940000157637.b.i #22	ENSGT01030000234621.D.c.e	ENSGT00390000014721.c.a.a.b	ENSGT00390000009664.a.j	ENSGT00940000155191.b.a	ENSGT00390000010184.o	ENSGT00950000182887.C.a.a.a.b.a.a	ENSGT00940000153299.a.a.d	ENSGT00940000154344.a.f	ENSGT00940000153669.b.r	ENSGT00940000157029.n	ENSGT00730000111366.o	ENSGT00990000210653	ENSGT00940000157094.b	ENSGT00940000164076.a.a.e	ENSGT00940000157678.ob
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00940000153783.b.a.a.b.a.a	ENSGT00940000165992.a.a.c	ENSGT00940000153916.A.b.f	ENSGT01030000234590.B.a.a.e.b.e.a	ENSGT01040000240444.A.a.b.a	ENSGT00940000164578.a.b.e	ENSGT00950000182923.B.b.k	ENSGT00390000014725.r.a.g	ENSGT00940000156850.a.a.e #28	ENSGT00940000160621.q #16	ENSGT00970000193372.a.b.jb.a #15	ENSGT00910000144784.a.f	ENSGT00390000016398.b #13	ENSGT00390000016398.a.a #13	ENSGT00390000017407	ENSGT00940000157637.b.i #22	ENSGT01030000234621.D.c.e	ENSGT00390000014721.c.a.a.b	ENSGT01060000252388	ENSGT00940000155191.b.a	ENSGT00390000010184.o	ENSGT00950000182887.C.a.a.a.b.a.a	ENSGT00940000153299.a.a.d	ENSGT00940000154344.a.f	ENSGT00940000153669.b.r	ENSGT00730000111366.o	ENSGT00990000210653	ENSGT00940000157094.b	ENSGT00940000164076.a.a.e	ENSGT00940000157678.ob	ENSGT00940000160883.b.e
Coho salmon	MODERN SPECIES	29	eif4a1b (ENSOKIG00005003427)	sox19b (ENSOKIG00005003411)	mpdu1b (ENSOKIG00005003403)	ENSOKIG00005003395	ENSOKIG00005003391	her8a (ENSOKIG00005003377)	gal3st4 (ENSOKIG00005003365)	trappc14 (ENSOKIG00005003340)	zanl (ENSOKIG00005003319) #28	serpine1 (ENSOKIG00005003306) #16	ap1s1 (ENSOKIG00005003294) #15	ENSOKIG00005003291	nat16l (ENSOKIG00005003284) #13	NAT16 (ENSOKIG00005003271) #13	ENSOKIG00005003265	ache (ENSOKIG00005003235) #22	ENSOKIG00005003216	C17orf49 (ENSOKIG00005003201)	ENSOKIG00005003195	ENSOKIG00005003110	MED11 (ENSOKIG00005003063)	ARRB2 (ENSOKIG00005002853)	hmgb3a (ENSOKIG00005002804)	CD99L2 (ENSOKIG00005002764)	mtmr1a (ENSOKIG00005002077)	ENSOKIG00005046093	ENSOKIG00005046085	ankrd46b (ENSOKIG00005046054)	ENSOKIG00005046012	col4a5 (ENSOKIG00005045991)	ENSOKIG00005045987
Chinook salmon	MODERN SPECIES	6	senp3b (ENSOTSG00005038649)	eif4a1b (ENSOTSG00005037323)	sox19b (ENSOTSG00005037314)	mpdu1b (ENSOTSG00005037312)	ENSOTSG00005037310	ENSOTSG00005037308	her8a (ENSOTSG00005037307)	trappc14 (ENSOTSG00005037285)	ENSOTSG00005037281 #28	serpine1 (ENSOTSG00005037280) #16	ap1s1 (ENSOTSG00005037274) #15	ENSOTSG00005037273	nat16l (ENSOTSG00005037272) #13	NAT16 (ENSOTSG00005037270) #13	ENSOTSG00005037269	ache (ENSOTSG00005037202) #22	ENSOTSG00005037199	C17orf49 (ENSOTSG00005037197)	ENSOTSG00005037196	med11 (ENSOTSG00005037194)	ARRB2 (ENSOTSG00005037102)	alox12 (ENSOTSG00005036966)	hmgb3a (ENSOTSG00005036954)	cd99l2 (ENSOTSG00005036950)	mtmr1a (ENSOTSG00005033863)	ENSOTSG00005018336	ENSOTSG00005018334	ankrd46b (ENSOTSG00005018328)	ENSOTSG00005018323	col4a5 (ENSOTSG00005018308)	ENSOTSG00005018303
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000005696	mpdu1b (ENSOMYG00000005674)	ENSOMYG00000059474	ENSOMYG00000041840	ENSOMYG00000041836	her8a (ENSOMYG00000057359)	gal3st4 (ENSOMYG00000041828)	trappc14 (ENSOMYG00000041813)	serpine1 (ENSOMYG00000041794) #16	ap1s1 (ENSOMYG00000041764) #15	ENSOMYG00000041757	nat16l (ENSOMYG00000041754) #13	ENSOMYG00000052094	NAT16 (ENSOMYG00000041746) #13	ENSOMYG00000041741	ache (ENSOMYG00000041707) #22	ENSOMYG00000041697	ENSOMYG00000041690	ENSOMYG00000041687	alox12 (ENSOMYG00000041596)	MED11 (ENSOMYG00000041547)	ENSOMYG00000041530	hmgb3a (ENSOMYG00000041513)	cd99l2 (ENSOMYG00000041499)	mtmr1a (ENSOMYG00000076594)	mtm1 (ENSOMYG00000041286)	ENSOMYG00000074902	ENSOMYG00000041261	ENSOMYG00000041266	ankrd46b (ENSOMYG00000041219)	ENSOMYG00000053629
Salmo	ANCESTRAL SPECIES	25	ENSGT00940000153783.b.a.a.b.a.a	ENSGT00940000165992.a.a.c	ENSGT00940000153916.A.b.f	ENSGT01030000234590.B.a.a.e.b.e	ENSGT01040000240444.A.a.b.a	ENSGT00940000164578.a.b.e	ENSGT00950000182923.B.b.k	ENSGT00390000014725.r.a.g	ENSGT00940000156850.a.a.e #28	ENSGT00940000160621.q #16	ENSGT00970000193372.a.b.jb.a #15	ENSGT00910000144784.a.f	ENSGT00390000016398.b #13	ENSGT00390000016398.a.a #13	ENSGT00390000017407	ENSGT00940000157637.b.i #22	ENSGT01030000234621.D.c.e	ENSGT00390000014721.c.a.a.b	ENSGT00390000009664.a.i.b	ENSGT00940000155191.b.a	ENSGT00730000111225	ENSGT00940000167512.c	ENSGT00390000010184.o	ENSGT00950000182887.C.a.a.a.b.a.a	ENSGT00940000153299.a.a.d	ENSGT00940000154344.a.f	ENSGT00940000153669.b.r	ENSGT00940000157029.n	ENSGT00730000111366.o	ENSGT00990000210653	ENSGT00940000157094.b
River trout	MODERN SPECIES	38	sox19b (ENSSTUG00000015409)	mpdu1b (ENSSTUG00000015425)	ENSSTUG00000015471	ENSSTUG00000015477	her8a (ENSSTUG00000015482)	gal3st4 (ENSSTUG00000015496)	trappc14 (ENSSTUG00000015507)	zanl (ENSSTUG00000015547) #28	serpine1 (ENSSTUG00000015617) #16	ap1s1 (ENSSTUG00000015631) #15	ENSSTUG00000015675	ENSSTUG00000015680	nat16l (ENSSTUG00000015684) #13	NAT16 (ENSSTUG00000015703) #13	ENSSTUG00000015709	ache (ENSSTUG00000015731) #22	ENSSTUG00000015886	C17orf49 (ENSSTUG00000015896)	rnaseka (ENSSTUG00000015911)	alox12 (ENSSTUG00000015927)	ENSSTUG00000016021	med11 (ENSSTUG00000016041)	ARRB2 (ENSSTUG00000029648)	hmgb3a (ENSSTUG00000029810)	CD99L2 (ENSSTUG00000029828)	mtmr1a (ENSSTUG00000029887)	ENSSTUG00000031234	ENSSTUG00000031242	ankrd46b (ENSSTUG00000031250)	ENSSTUG00000031343	col4a5 (ENSSTUG00000031494)
Atlantic salmon	MODERN SPECIES	26	sox19b (ENSSSAG00000102993)	mpdu1b (ENSSSAG00000068053)	ENSSSAG00000068051	ENSSSAG00000068050	her8a (ENSSSAG00000086592)	gal3st4 (ENSSSAG00000108553)	trappc14 (ENSSSAG00000044293)	zanl (ENSSSAG00000068021) #28	serpine1 (ENSSSAG00000068013) #16	ap1s1 (ENSSSAG00000031418) #15	ENSSSAG00000068003	nat16l (ENSSSAG00000067998) #13	ENSSSAG00000068000	ENSSSAG00000067986	ENSSSAG00000097125 #13	ache (ENSSSAG00000067397) #22	ENSSSAG00000067381	ENSSSAG00000117607	rnaseka (ENSSSAG00000067363)	alox12 (ENSSSAG00000066292)	ENSSSAG00000113694	ENSSSAG00000066247	ENSSSAG00000065920	HMGB3 (ENSSSAG00000065900)	cd99l2 (ENSSSAG00000065887)	mtmr1a (ENSSSAG00000108226)	mtm1 (ENSSSAG00000064922)	ENSSSAG00000064879	ENSSSAG00000064874	ankrd46b (ENSSSAG00000064738)	ENSSSAG00000090893
Huchen	MODERN SPECIES	1532															ENSHHUG00000050392	ache (ENSHHUG00000050394) #22	ENSHHUG00000050398	zgc:92664 (ENSHHUG00000050402)	alox12 (ENSHHUG00000050414)	ENSHHUG00000050426	ENSHHUG00000050440	ARRB2 (ENSHHUG00000050441)	hmgb3a (ENSHHUG00000050456)
Salmoninae	ANCESTRAL SPECIES	561				ENSGT00390000016193	ENSGT00390000014725.r.a.h	ENSGT00990000211448	ENSGT00950000182923.B.b.l	ENSGT00940000164578.a.b.f	ENSGT01040000240444.A.a.b.b	ENSGT01030000234590.B.a.a.e.b.f	ENSGT00940000160621.r #16	ENSGT00970000193372.a.b.jb.b #15	ENSGT00910000144784.a.e	ENSGT00390000016398.a.b #13	ENSGT00990000206435.A	ENSGT00940000157637.b.j #22	ENSGT01030000234621.D.c.f	ENSGT00390000014721.c.a.a.a	ENSGT00390000009664.a.i.a	ENSGT00940000155191.b.b.a.b.b.b
Salmoninae_a	ANCESTRAL SPECIES	34	ENSGT00940000153916.A.b.e	ENSGT00940000163587.a.b.b.f.a	ENSGT00390000016193	ENSGT00390000014725.r.a.h	ENSGT00990000211448	ENSGT00950000182923.B.b.l	ENSGT00940000164578.a.b.f	ENSGT01040000240444.A.a.b.b	ENSGT01030000234590.B.a.a.e.b.f	ENSGT00940000160621.r #16	ENSGT00970000193372.a.b.jb.b #15	ENSGT00910000144784.a.e	ENSGT00390000016398.a.b #13	ENSGT01090000260663	ENSGT00990000206435.A	ENSGT00940000157637.b.j #22	ENSGT01030000234621.D.c.f	ENSGT00390000014721.c.a.a.a	ENSGT00390000009664.a.i.a	ENSGT00940000155191.b.b.a.b.b.a	ENSGT00940000167512.d	ENSGT00390000010184.p	ENSGT00950000182887.C.a.a.a.b.a.b	ENSGT00950000182887.C.a.a.a.b.b	ENSGT00940000153299.a.a.c	ENSGT00940000154344.a.e	ENSGT00940000153669.b.q	ENSGT00940000157029.m	ENSGT00730000111366.p	ENSGT00940000157094.a	ENSGT00940000164076.a.a.f
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00940000153783.b.a.a.b.a.b	ENSGT00940000165992.a.a.d	ENSGT00940000153916.A.b.e	ENSGT00390000016193	ENSGT00390000014725.r.a.h	ENSGT00990000211448	ENSGT00950000182923.B.b.l	ENSGT00940000164578.a.b.f	ENSGT01040000240444.A.a.b.b	ENSGT01030000234590.B.a.a.e.b.f	ENSGT00940000160621.r #16	ENSGT00970000193372.a.b.jb.b #15	ENSGT00910000144784.a.e	ENSGT00390000016398.a.b #13	ENSGT01090000260663	ENSGT00940000157637.b.j #22	ENSGT00390000014721.c.a.a.a	ENSGT00390000009664.a.i.a	ENSGT00940000155191.b.b.a.b.b.a	ENSGT00940000167512.d	ENSGT00390000010184.p	ENSGT00950000182887.C.a.a.a.b.b	ENSGT00940000153299.a.a.c	ENSGT00940000154344.a.e	ENSGT00940000153669.b.q	ENSGT00940000157029.m	ENSGT00730000111366.p	ENSGT00940000157094.a	ENSGT00940000164076.a.a.f	ENSGT00940000160883.b.f	ENSGT00940000165991
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00940000165992.a.a.d	ENSGT00940000153916.A.b.e	ENSGT00940000163587.a.b.b.f.a	ENSGT00390000016193	ENSGT00390000014725.r.a.h	ENSGT00990000211448	ENSGT00950000182923.B.b.l	ENSGT00940000164578.a.b.f	ENSGT01040000240444.A.a.b.b	ENSGT01030000234590.B.a.a.e.b.f	ENSGT00940000160621.r #16	ENSGT00970000193372.a.b.jb.b #15	ENSGT00910000144784.a.e	ENSGT00390000016398.a.b #13	ENSGT01090000260663	ENSGT00940000157637.b.j #22	ENSGT00390000014721.c.a.a.a	ENSGT00390000009664.a.i.a	ENSGT00940000155191.b.b.a.b.b.a	ENSGT00940000167512.d	ENSGT00390000010184.p	ENSGT00950000182887.C.a.a.a.b.b	ENSGT00940000153299.a.a.c	ENSGT00940000154344.a.e	ENSGT00940000153669.b.q	ENSGT00940000157029.m	ENSGT00730000111366.p	ENSGT00940000157094.a	ENSGT00940000164076.a.a.f	ENSGT00940000160883.b.f	ENSGT00940000165991
Chinook salmon	MODERN SPECIES	1	cited1 (ENSOTSG00005011016)	ENSOTSG00005011021	ENSOTSG00005011023	vbp1 (ENSOTSG00005011025)	RAB39B (ENSOTSG00005011028)	zgc:162171 (ENSOTSG00005011031)	ENSOTSG00005011034	ENSOTSG00005011035	ENSOTSG00005011036	ENSOTSG00005011038	ankrd46b (ENSOTSG00005011040)	rnaseka (ENSOTSG00005011050)	ENSOTSG00005011051	rnaseka (ENSOTSG00005011052)	C17orf49 (ENSOTSG00005011053)	ache (ENSOTSG00005011056) #22	ENSOTSG00005011057	NAT16 (ENSOTSG00005011067) #13	ENSOTSG00005011069	AP1S1 (ENSOTSG00005011074) #15	serpine1 (ENSOTSG00005011077) #16	ENSOTSG00005011079	ENSOTSG00005011080	her8a (ENSOTSG00005011081)	gal3st4 (ENSOTSG00005011082)	ENSOTSG00005011083	trappc14 (ENSOTSG00005011084)	MBLAC1 (ENSOTSG00005000731)	mpdu1b (ENSOTSG00005000855)	ENSOTSG00005001097	ENSOTSG00005001274
Coho salmon	MODERN SPECIES	7	mpdu1b (ENSOKIG00005004636)	ENSOKIG00005004628	MBLAC1 (ENSOKIG00005004616)	trappc14 (ENSOKIG00005004607)	gal3st4 (ENSOKIG00005004598)	her8a (ENSOKIG00005004592)	ENSOKIG00005004580	ENSOKIG00005004561	serpine1 (ENSOKIG00005004521) #16	ap1s1 (ENSOKIG00005004479) #15	ENSOKIG00005004468	NAT16 (ENSOKIG00005004461) #13	ENSOKIG00005004403	ENSOKIG00005004350	ENSOKIG00005004343	ache (ENSOKIG00005004324) #22	C17orf49 (ENSOKIG00005004294)	rnaseka (ENSOKIG00005004253)	alox12 (ENSOKIG00005035847)	ENSOKIG00005035810	med11 (ENSOKIG00005035785)	ARRB2 (ENSOKIG00005035609)	hmgb3a (ENSOKIG00005035577)	cd99l2 (ENSOKIG00005035568)	mtmr1a (ENSOKIG00005032629)	mtm1 (ENSOKIG00005031967)	ENSOKIG00005031868	ENSOKIG00005031865	ENSOKIG00005031849	ENSOKIG00005031836	ankrd46b (ENSOKIG00005031807)
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000002887	ENSOMYG00000002816	mpdu1b (ENSOMYG00000002805)	ENSOMYG00000002737	trappc14 (ENSOMYG00000002716)	gal3st4 (ENSOMYG00000002680)	her8a (ENSOMYG00000002660)	ENSOMYG00000002627	serpine1 (ENSOMYG00000002596) #16	ap1s1 (ENSOMYG00000002528) #15	ENSOMYG00000002491	ENSOMYG00000067099	NAT16 (ENSOMYG00000002484) #13	ENSOMYG00000048671	ENSOMYG00000069235	ENSOMYG00000002407 #22	ENSOMYG00000051791	ENSOMYG00000002336	ENSOMYG00000058907	ENSOMYG00000002281	ENSOMYG00000002242	MED11 (ENSOMYG00000070661)	ENSOMYG00000058746	ENSOMYG00000050717	ENSOMYG00000071185	ENSOMYG00000071785	hmgb3a (ENSOMYG00000002209)	cd99l2 (ENSOMYG00000002190)	mtmr1a (ENSOMYG00000002101)	mtm1 (ENSOMYG00000001860)	ENSOMYG00000068051
Salmo	ANCESTRAL SPECIES	51	ENSGT00940000163587.a.b.b.f.a	ENSGT00940000156850.a.a.f #28	ENSGT01030000235415	ENSGT00390000016193	ENSGT00390000014725.r.a.h	ENSGT00950000182923.B.b.l	ENSGT00940000164578.a.b.f	ENSGT01040000240444.A.a.b.b	ENSGT01030000234590.B.a.a.e.b.f	ENSGT00940000160621.r #16	ENSGT00970000193372.a.b.jb.b #15	ENSGT00910000144784.a.e	ENSGT00390000016398.a.b #13	ENSGT01090000260663	ENSGT00990000206435.A	ENSGT00940000157637.b.j #22	ENSGT01030000234621.D.c.f	ENSGT00390000014721.c.a.a.a	ENSGT00390000009664.a.i.a	ENSGT00940000155191.b.b.b	ENSGT00940000167512.d	ENSGT00390000010184.p	ENSGT00950000182887.C.a.a.a.b.a.b	ENSGT00950000182887.C.a.a.a.b.b	ENSGT00940000153299.a.a.c	ENSGT00940000154344.a.e	ENSGT00940000153669.b.q	ENSGT00730000111366.p	ENSGT00940000157094.a	ENSGT00940000164076.a.a.e	ENSGT00940000162034
River trout	MODERN SPECIES	35	ENSSTUG00000012634	ENSSTUG00000012641	ENSSTUG00000012661	MBLAC1 (ENSSTUG00000012668)	trappc14 (ENSSTUG00000012709)	gal3st4 (ENSSTUG00000012779)	her8a (ENSSTUG00000012786)	ENSSTUG00000012797	ENSSTUG00000012813	serpine1 (ENSSTUG00000012830) #16	ap1s1 (ENSSTUG00000012844) #15	ENSSTUG00000012894	NAT16 (ENSSTUG00000012903) #13	ENSSTUG00000012916	ENSSTUG00000012940	ache (ENSSTUG00000012983) #22	ENSSTUG00000013151	C17orf49 (ENSSTUG00000013167)	rnaseka (ENSSTUG00000013197)	alox12 (ENSSTUG00000013224)	ENSSTUG00000013394	med11 (ENSSTUG00000013575)	ARRB2 (ENSSTUG00000000586)	hmgb3a (ENSSTUG00000000604)	cd99l2 (ENSSTUG00000000614)	mtmr1a (ENSSTUG00000000683)	ankrd46b (ENSSTUG00000001396)	ENSSTUG00000001409	ENSSTUG00000001415	ENSSTUG00000001422	ENSSTUG00000001461
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000100352	trappc14 (ENSSSAG00000094076)	gal3st4 (ENSSSAG00000044285)	her8a (ENSSSAG00000085380)	p2ry5 (ENSSSAG00000044266)	ENSSSAG00000044260	serpine1 (ENSSSAG00000044246) #16	ap1s1 (ENSSSAG00000099951) #15	ENSSSAG00000104479	NAT16 (ENSSSAG00000102629) #13	ENSSSAG00000115591	ENSSSAG00000098512	ENSSSAG00000109340	ENSSSAG00000044159	ENSSSAG00000112531	ache (ENSSSAG00000042352) #22	ENSSSAG00000042264	alox12 (ENSSSAG00000041540)	ENSSSAG00000041395	med11 (ENSSSAG00000041378)	ENSSSAG00000104204	hmgb3 (ENSSSAG00000070873)	cd99l2 (ENSSSAG00000119892)	ENSSSAG00000095765	mtmr1a (ENSSSAG00000095138)	ENSSSAG00000107962	ENSSSAG00000108082	ENSSSAG00000116688	ankrd46b (ENSSSAG00000009874)	ENSSSAG00000041304	ENSSSAG00000108543
Huchen	MODERN SPECIES	2684															ENSHHUG00000042434	ache (ENSHHUG00000042429) #22	C17orf49 (ENSHHUG00000042398)	rnaseka (ENSHHUG00000042393)	ENSHHUG00000042389	ENSHHUG00000042383
Northern pike	MODERN SPECIES	23	MBLAC1 (ENSELUG00000010105)	tm4sf21b (ENSELUG00000010121)	ENSELUG00000010153	her8a (ENSELUG00000010171)	gal3st4 (ENSELUG00000010192)	trappc14 (ENSELUG00000010241)	ENSELUG00000010289 #28	ENSELUG00000028264 #28	serpine1 (ENSELUG00000010308) #16	ap1s1 (ENSELUG00000010337) #15	ENSELUG00000010352	NAT16 (ENSELUG00000010366) #13	ENSELUG00000010380	ENSELUG00000010418	ENSELUG00000027142	ache (ENSELUG00000010445) #22	ENSELUG00000010459	C17orf49 (ENSELUG00000010478)	rnaseka (ENSELUG00000033455)	alox12 (ENSELUG00000010507)	ENSELUG00000010558	med11 (ENSELUG00000028435)	ARRB2 (ENSELUG00000010757)	hmgb3a (ENSELUG00000010783)	cd99l2 (ENSELUG00000010826)	mtmr1a (ENSELUG00000011085)	ENSELUG00000011124	ENSELUG00000030947	ENSELUG00000026638	efnb2a (ENSELUG00000033699)	ENSELUG00000026024
Osteoglossiformes	ANCESTRAL SPECIES	33	ENSGT00940000154445.b	ENSGT00940000154108.a.d	ENSGT00940000157357.e.a.e	ENSGT00940000159674.h	ENSGT00950000183162.a.a.d	ENSGT00940000158778.f	ENSGT00950000182923.B.b.m	ENSGT00390000014725	ENSGT00940000156850.a.a #28	ENSGT00940000160621.i #16	ENSGT00970000193372.a.b.w #15	ENSGT00910000144784.a	ENSGT00390000016398.b #13	ENSGT00390000016398.a.e #13	ENSGT00390000017407	ENSGT00940000157637.b #22	ENSGT00840000132239	ENSGT01030000234621.D.d.f	ENSGT00390000009664.a	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00390000010184	ENSGT00950000182887.C.a.a.a.a.a.c	ENSGT00940000153299.a.a	ENSGT00940000154344.a.a	ENSGT00940000157029.f	ENSGT00990000212832	ENSGT00940000165066.g.a	ENSGT00940000160883.b	ENSGT00940000165991	ENSGT00940000164592.b.b
Asian bonytongue	MODERN SPECIES	4	zgc:110843 (ENSSFOG00015011359)	CXXC5 (ENSSFOG00015033199)	zgc:100829 (ENSSFOG00015011328)	PSD2 (ENSSFOG00015011297)	PURA (ENSSFOG00015027763)	NRG2 (ENSSFOG00015028862)	gal3st4 (ENSSFOG00015029481)	trappc14 (ENSSFOG00015011116)	zgc:77439 (ENSSFOG00015010892)	serpine1 (ENSSFOG00015010877) #16	AP1S1 (ENSSFOG00015010795) #15	ENSSFOG00015031230	nat16l (ENSSFOG00015010733) #13	NAT16 (ENSSFOG00015010709) #13	ENSSFOG00015010693	ache (ENSSFOG00015010678) #22	ENSSFOG00015027778	ENSSFOG00015010648	rnaseka (ENSSFOG00015030438)	alox12 (ENSSFOG00015010616)	ENSSFOG00015010594	med11 (ENSSFOG00015010572)	arrb2b (ENSSFOG00015024339)	hmgb3a (ENSSFOG00015027690)	cd99l2 (ENSSFOG00015029644)	mtm1 (ENSSFOG00015010467)	ENSSFOG00015026578	ankrd46b (ENSSFOG00015027965)	ENSSFOG00015010277	col4a5 (ENSSFOG00015010174)	ENSSFOG00015033084
P. kingsleyae	MODERN SPECIES	155	ENSPKIG00000022450	si:ch211-153b23.4 (ENSPKIG00000025681)	si:ch211-153b23.5 (ENSPKIG00000025611)	zgc:174917 (ENSPKIG00000025610)	zgc:174917 (ENSPKIG00000000014)	ENSPKIG00000000020	ENSPKIG00000000023	ENSPKIG00000000027	FRMPD3 (ENSPKIG00000000034)	ENSPKIG00000000047	SLC25A53 (ENSPKIG00000000056)	tmsb1 (ENSPKIG00000000060)	ENSPKIG00000000064	zgc:66447 (ENSPKIG00000000070)	ENSPKIG00000000084	ache (ENSPKIG00000000105) #22	ENSPKIG00000000111	ENSPKIG00000000117	ENSPKIG00000000124	alox12 (ENSPKIG00000000138)	PELP1 (ENSPKIG00000000176)	med11 (ENSPKIG00000000209)	arrb2b (ENSPKIG00000000221)	hmgb3a (ENSPKIG00000000238)	cd99l2 (ENSPKIG00000000258)	mtm1 (ENSPKIG00000000342)	ENSPKIG00000000380	ankrd46b (ENSPKIG00000000396)	ENSPKIG00000000414	ENSPKIG00000000442	ENSPKIG00000000451
Spotted gar	MODERN SPECIES	658	MBLAC1 (ENSLOCG00000014024)	tm4sf21b (ENSLOCG00000014028)	zgc:77439 (ENSLOCG00000014030)	her8a (ENSLOCG00000014036)	ENSLOCG00000017556	ENSLOCG00000014038	st6gal1 (ENSLOCG00000014041)	ENSLOCG00000014045	serpine1 (ENSLOCG00000014047) #16	ap1s1 (ENSLOCG00000014056) #15	ENSLOCG00000014060	nat16l (ENSLOCG00000014061) #13	NAT16 (ENSLOCG00000014063) #13	ENSLOCG00000014065	ENSLOCG00000014069 #21	ache (ENSLOCG00000014072) #22	ENSLOCG00000017557	zgc:92664 (ENSLOCG00000014080)	rnaseka (ENSLOCG00000014085)	alox12 (ENSLOCG00000014089)	ENSLOCG00000014096	plod3 (ENSLOCG00000014098) #11	ENSLOCG00000014115	KCTD11 (ENSLOCG00000017558)	ENSLOCG00000014118	ENSLOCG00000014122	ENSLOCG00000014126	ENSLOCG00000014130	ENSLOCG00000014134	ENSLOCG00000017559	ENSLOCG00000014137
Reedfish	MODERN SPECIES	11	ENSECRG00000009765	ap4m1 (ENSECRG00000009314)	mcm7 (ENSECRG00000009277)	and3 (ENSECRG00000009265)	COPS6 (ENSECRG00000009236)	ENSECRG00000009217	ENSECRG00000009207	her8a (ENSECRG00000009204)	zgc:77439 (ENSECRG00000009197)	serpine1 (ENSECRG00000009181) #16	ap1s1 (ENSECRG00000009166) #15	ENSECRG00000009161	NAT16 (ENSECRG00000009155) #13	ENSECRG00000009152	ENSECRG00000009147	ache (ENSECRG00000009134) #22	ENSECRG00000009118	ENSECRG00000009112	zgc:92664 (ENSECRG00000009104)	rnaseka (ENSECRG00000009089)	alox12 (ENSECRG00000009070)	alox12 (ENSECRG00000008889)	ENSECRG00000008812	alox12 (ENSECRG00000008715)	alox12 (ENSECRG00000008563)	alox12 (ENSECRG00000007790)	ENSECRG00000007700	med11 (ENSECRG00000003350)	arrb2a (ENSECRG00000003295)	ENSECRG00000003244	tm4sf21b (ENSECRG00000003232)
Elephant shark	MODERN SPECIES	3216																ache (ENSCMIG00000005262) #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000157637.a ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000157637.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000157637.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000157637.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000157637.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES	12	ENSGT00530000063816.c.b	ENSGT00390000010063	ENSGT00530000064411.a	ENSGT00940000175310	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00390000008610.a.a	ENSGT00940000165320	ENSGT00510000046732.A.d	ENSGT01030000234621.C.a.a.b	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT00390000005140.a	ENSGT00940000157637.a ##22	ENSGT00940000157023	ENSGT00940000158681	ENSGT00940000164162	ENSGT00940000163043	ENSGT00940000167407	ENSGT00940000161641	ENSGT00940000160751	ENSGT00940000171284	ENSGT00390000017913	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT01100000263515.a.b.a.a
Clupeocephala	ANCESTRAL SPECIES	10	ENSGT00530000063816.c.b	ENSGT00390000010063	ENSGT00530000064411.a	ENSGT00940000175310	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00390000008610.a.a	ENSGT00940000165320	ENSGT00510000046732.A.d	ENSGT01030000234621.C.a.a.b	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT00390000005140.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000167407	ENSGT00940000161641	ENSGT00940000160751	ENSGT00940000171284	ENSGT00940000159228.b.a	ENSGT00940000155026.c	ENSGT00940000158681.b	ENSGT00390000017913	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637
Otomorpha	ANCESTRAL SPECIES	58	ENSGT00950000182988.a.b.a	ENSGT00530000063816.c.b	ENSGT00390000010063	ENSGT00530000064411.a	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00390000008610.a.a	ENSGT00940000165320	ENSGT00510000046732.A.d	ENSGT01030000234621.C.a.a.b	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT00390000005140.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000161641	ENSGT00940000160751	ENSGT00390000017913	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637.ab	ENSGT00940000163939	ENSGT00390000018660	ENSGT01100000263515.a.b.a.a.c	ENSGT00940000159135.g	ENSGT00940000162647
Clupeiformes	ANCESTRAL SPECIES	59	ENSGT00950000182988.a.b.a	ENSGT00530000063816.c.b	ENSGT00390000010063	ENSGT00530000064411.a	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00390000008610.a.a	ENSGT00940000165320	ENSGT00510000046732.A.d	ENSGT01030000234621.C.a.a.b	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT00390000005140.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000167407	ENSGT00940000161641	ENSGT00940000160751	ENSGT00390000017913	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637.ab	ENSGT00940000163939	ENSGT00390000018660	ENSGT01100000263515.a.b.a.a.c	ENSGT00940000159135.g	ENSGT00940000162647	ENSGT00940000155368
Atlantic herring	MODERN SPECIES	25	ryr1b (ENSCHAG00000027560)	LGALS4 (ENSCHAG00000027774)	MINDY4B (ENSCHAG00000027776)	ENSCHAG00000027777	cuedc1b (ENSCHAG00000027778)	ENSCHAG00000000302	FCHSD2 (ENSCHAG00000001158)	P2RY2 (ENSCHAG00000003451)	relt (ENSCHAG00000003472)	ARHGEF17 (ENSCHAG00000003565)	P2RY6 (ENSCHAG00000004003)	fam168a (ENSCHAG00000004019)	ENSCHAG00000004063	ENSCHAG00000004101	ENSCHAG00000004109	ENSCHAG00000004117 ##22	SLITRK3 (ENSCHAG00000004141)	ENSCHAG00000004555	ENSCHAG00000014069	SERPINI2 (ENSCHAG00000014081)	ENSCHAG00000014097	pdcd10a (ENSCHAG00000014129)	serpini1 (ENSCHAG00000014217)	ENSCHAG00000014263	golim4a (ENSCHAG00000014307)	ENSCHAG00000014320	veph1 (ENSCHAG00000014331)	PTX3 (ENSCHAG00000014406)	ENSCHAG00000014413	ccnl1a (ENSCHAG00000014435)	ENSCHAG00000014573
Denticle herring	MODERN SPECIES	10	pak1 (ENSDCDG00000029768)	aqp11 (ENSDCDG00000030631)	clns1a (ENSDCDG00000030632)	ENSDCDG00000030635	INTS4 (ENSDCDG00000030636)	aamdc (ENSDCDG00000030638)	KCTD14 (ENSDCDG00000030639)	rps3 (ENSDCDG00000030642)	ENSDCDG00000030648	FCHSD2 (ENSDCDG00000030668)	P2RY2 (ENSDCDG00000031234)	relt (ENSDCDG00000031237)	ARHGEF17 (ENSDCDG00000031247)	P2RY6 (ENSDCDG00000031254)	fam168a (ENSDCDG00000031256)	ENSDCDG00000031259 ##22	ENSDCDG00000031261	SLITRK3 (ENSDCDG00000031263)	ENSDCDG00000031418	ENSDCDG00000033755	WDR49 (ENSDCDG00000033761)	ENSDCDG00000033768	pdcd10a (ENSDCDG00000033772)	serpini1 (ENSDCDG00000033787)	ENSDCDG00000033791	ENSDCDG00000033794	ENSDCDG00000033799	veph1 (ENSDCDG00000033800)	PTX3 (ENSDCDG00000033807)	ccnl1a (ENSDCDG00000033814)	LEKR1 (ENSDCDG00000033925)
Otophysi	ANCESTRAL SPECIES	134	ENSGT00950000182988.a.b.a	ENSGT00530000063816.c.b	ENSGT00390000010063	ENSGT00530000064411.a	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00390000008610.a.a	ENSGT00940000165320	ENSGT00510000046732.A.d	ENSGT01030000234621.C.a.a.b	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT00390000005140.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637.ab
Characiphysae	ANCESTRAL SPECIES	66	ENSGT00950000182988.a.b.a	ENSGT00530000063816.c.b	ENSGT00390000010063	ENSGT00530000064411.a	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00390000008610.a.a	ENSGT00940000165320	ENSGT00510000046732.A.d	ENSGT01030000234621.C.a.a.b	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT00390000005140.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162
Characiphysae_b	ANCESTRAL SPECIES	72	ENSGT00950000182988.a.b.a	ENSGT00530000063816.c.b	ENSGT00390000010063	ENSGT00530000064411.a	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00390000008610.a.a	ENSGT00940000165320	ENSGT00510000046732.A.d	ENSGT01030000234621.C.a.a.b	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT00390000005140.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162
Characoidei	ANCESTRAL SPECIES	76	ENSGT00940000156251.a	ENSGT00950000182988.a.b.a	ENSGT00530000063816.c.b	ENSGT00390000010063	ENSGT00530000064411.a	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00390000008610.a.a	ENSGT00940000165320	ENSGT00510000046732.A.d	ENSGT01030000234621.C.a.a.b	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT00940000157637.a ##22
Red-bellied piranha	MODERN SPECIES	98	aamdc (ENSPNAG00000018443)	INTS4 (ENSPNAG00000018579)	KCTD14 (ENSPNAG00000018601)	rps3 (ENSPNAG00000018641)	ENSPNAG00000018673	FCHSD2 (ENSPNAG00000018820)	P2RY2 (ENSPNAG00000018838)	relt (ENSPNAG00000018870)	ARHGEF17 (ENSPNAG00000018902)	P2RY6 (ENSPNAG00000018920)	ENSPNAG00000018929	ENSPNAG00000018960	ENSPNAG00000018977	ENSPNAG00000018995	ENSPNAG00000019005	ENSPNAG00000019017 ##22	ENSPNAG00000019024	ENSPNAG00000019031	arpc5a (ENSPNAG00000019051)	pla2g4aa (ENSPNAG00000019121)	ptgs2a (ENSPNAG00000019157)	pdca (ENSPNAG00000019167)	odr4 (ENSPNAG00000019183)	TPR (ENSPNAG00000019221)	prg4a (ENSPNAG00000019276)	ENSPNAG00000019298	dusp12 (ENSPNAG00000003589)	OLFML2B (ENSPNAG00000019378)	SLITRK3 (ENSPNAG00000019384)	ENSPNAG00000019424
Mexicana tetra	MODERN SPECIES	115	RSF1 (ENSAMXG00000013740)	aamdc (ENSAMXG00000013718)	INTS4 (ENSAMXG00000013679)	ENSAMXG00000043500	KCTD14 (ENSAMXG00000030590)	rps3 (ENSAMXG00000013642)	ENSAMXG00000043130	ENSAMXG00000036448	FCHSD2 (ENSAMXG00000013591)	P2RY2 (ENSAMXG00000040207)	relt (ENSAMXG00000033275)	ARHGEF17 (ENSAMXG00000013562)	P2RY6 (ENSAMXG00000026325)	ENSAMXG00000013543	ENSAMXG00000029930	ENSAMXG00000006793 ##22
Electric eel	MODERN SPECIES	134	pak1 (ENSEEEG00000023532)	aqp11 (ENSEEEG00000023526)	clns1a (ENSEEEG00000023523)	ENSEEEG00000023518	aamdc (ENSEEEG00000023516)	INTS4 (ENSEEEG00000023515)	KCTD14 (ENSEEEG00000023513)	ENSEEEG00000023509	ENSEEEG00000023507	FCHSD2 (ENSEEEG00000023467)	P2RY2 (ENSEEEG00000023463)	relt (ENSEEEG00000023462)	ARHGEF17 (ENSEEEG00000023460)	P2RY6 (ENSEEEG00000023459)	ENSEEEG00000023458	ENSEEEG00000023456 ##22	SLITRK3 (ENSEEEG00000023455)	ENSEEEG00000023375
Cyprinoidei	ANCESTRAL SPECIES	138	ENSGT00530000063816.c.b	ENSGT00390000010063	ENSGT00530000064411.a	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00390000008610.a.a	ENSGT00940000165320	ENSGT00510000046732.A.d	ENSGT01030000234621.C.a.a.b.g	ENSGT01030000234621.C.a.a.b.h	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT00390000005140.a	ENSGT00940000157637.a ##22	ENSGT00940000157023	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767
Cyprininae	ANCESTRAL SPECIES	865														ENSGT01030000234621.C.a.b.b	ENSGT00390000005140.a.b	ENSGT00940000157637.a ##22	ENSGT00940000157023	ENSGT00940000158681.a.e	ENSGT00940000164162.i.b	ENSGT00960000186767.a
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	25	ENSGT00530000063816.c.b.b	ENSGT00390000010063.rb	ENSGT00530000064411.a.a	ENSGT00390000011958.v	ENSGT00390000010128.z	ENSGT00940000160762	ENSGT00390000008610.a.a.d	ENSGT00940000165320	ENSGT00510000046732.A.d.b	ENSGT01030000234621.C.a.a.b.g	ENSGT01030000234621.C.a.a.b.h.a	ENSGT00940000160350.g	ENSGT00940000153798.B.i	ENSGT01030000234621.C.a.b.a	ENSGT00390000005140.a.a	ENSGT00940000157637.a.a ##22	ENSGT00940000158681.a.e	ENSGT00940000164162.i.b	ENSGT00960000186767.a	ENSGT00390000017913.r.a.b	ENSGT00940000158168.l	ENSGT00390000015980.c	ENSGT00940000164637.ab.e	ENSGT00940000163723.A.e.g.b	ENSGT00940000163723.A.f.b.a.a.b	ENSGT00940000163723.A.f.b.b.b	ENSGT00940000153725.a.b.a.g	ENSGT00940000156519.o.a	ENSGT00950000182971.A.n	ENSGT00390000015893.f	ENSGT00390000015857.b
Golden-line barbel	MODERN SPECIES	13	ENSSGRG00000033982	pak1 (ENSSGRG00000033667)	clns1a (ENSSGRG00000033658)	RSF1 (ENSSGRG00000033656)	ENSSGRG00000033652	aamdc (ENSSGRG00000033646)	INTS4 (ENSSGRG00000033248)	KCTD14 (ENSSGRG00000033242)	ENSSGRG00000033239	FCHSD2 (ENSSGRG00000033194)	P2RY2 (ENSSGRG00000033192)	relt (ENSSGRG00000033191)	ARHGEF17 (ENSSGRG00000033190)	P2RY6 (ENSSGRG00000033189)	fam168a (ENSSGRG00000033187)	ENSSGRG00000033184 ##22	SLITRK3 (ENSSGRG00000033182)	ENSSGRG00000033181	ENSSGRG00000033180	ENSSGRG00000033178	ENSSGRG00000033177	pdcd10a (ENSSGRG00000033123)	serpini1 (ENSSGRG00000033122)	ENSSGRG00000033121	ENSSGRG00000033120	ENSSGRG00000033110	RGS9BP (ENSSGRG00000033109)	zdhhc7 (ENSSGRG00000033107)	nip7 (ENSSGRG00000033106)	cog8 (ENSSGRG00000033105)	NOB1 (ENSSGRG00000033104)
Common carp reference	MODERN SPECIES	19	pak1 (ENSCCRG00000025855)	aqp11 (ENSCCRG00000076976)	clns1a (ENSCCRG00000067103)	RSF1 (ENSCCRG00000054713)	aamdc (ENSCCRG00000018471)	INTS4 (ENSCCRG00000018932)	rps3 (ENSCCRG00000018907)	ENSCCRG00000018459	ENSCCRG00000077876	ENSCCRG00000074022	ENSCCRG00000048135	relt (ENSCCRG00000021521)	ENSCCRG00000021502	P2RY6 (ENSCCRG00000072292)	ENSCCRG00000082068	ENSCCRG00000058914 ##22	ENSCCRG00000058594	ENSCCRG00000052217	ENSCCRG00000044984	pdcd10a (ENSCCRG00000065451)	serpini1 (ENSCCRG00000021656)	ENSCCRG00000055000	ENSCCRG00000021726	ENSCCRG00000021758	ENSCCRG00000054346	ENSCCRG00000021775	ENSCCRG00000065742	zdhhc7 (ENSCCRG00000055152)	nip7 (ENSCCRG00000021815)	cog8 (ENSCCRG00000002812)	ENSCCRG00000067608
Cyprininae_a	ANCESTRAL SPECIES	70	ENSGT00940000155350.g	ENSGT00940000156251.a.a.a	ENSGT00950000182988.a.b.a.d	ENSGT00530000063816.c.b.a	ENSGT00390000010063.qb.a	ENSGT00530000064411.a.b	ENSGT00390000011958.u	ENSGT00390000010128.y	ENSGT00390000008610.a.a.c.a	ENSGT00510000046732.A.d.a	ENSGT01030000234621.C.a.a.b.h.b	ENSGT00940000160350.h	ENSGT00940000153798.B.j	ENSGT01030000234621.C.a.b.b	ENSGT00390000005140.a.b	ENSGT00940000157637.a.b ##22	ENSGT00940000178700	ENSGT00940000158681.a.f	ENSGT00940000164162.i.a	ENSGT00940000163043	ENSGT00960000186767.b	ENSGT00940000167407	ENSGT00390000017913.r.a.a	ENSGT00940000158168.k	ENSGT00390000015980.d	ENSGT00940000164637.ab.f	ENSGT00940000163723.A.e.g.a	ENSGT00940000163723.A.f.b.a.a.a	ENSGT00940000163723.A.f.b.b.a	ENSGT00940000153725.a.b.a.h	ENSGT00940000156519.o.b
Common carp reference	MODERN SPECIES	9	pak1 (ENSCCRG00000053253)	aqp11 (ENSCCRG00000021499)	clns1a (ENSCCRG00000018899)	RSF1 (ENSCCRG00000063602)	aamdc (ENSCCRG00000058236)	INTS4 (ENSCCRG00000016334)	rps3 (ENSCCRG00000018292)	ENSCCRG00000018454	ENSCCRG00000076272	ENSCCRG00000079795	relt (ENSCCRG00000067376)	ENSCCRG00000051351	ARHGEF17 (ENSCCRG00000082091)	P2RY6 (ENSCCRG00000063902)	ENSCCRG00000069648	ENSCCRG00000058092 ##22	ENSCCRG00000064077	ENSCCRG00000063368	ENSCCRG00000012337	ENSCCRG00000064919	pdcd10a (ENSCCRG00000021528)	serpini1 (ENSCCRG00000072151)	ENSCCRG00000021716	ENSCCRG00000067834	ENSCCRG00000058521	ENSCCRG00000056704	ENSCCRG00000057421	ENSCCRG00000076253	zdhhc7 (ENSCCRG00000021801)	nip7 (ENSCCRG00000002701)	cog8 (ENSCCRG00000021820)
Goldfish	MODERN SPECIES	3452															SLITRK3 (ENSCARG00000048459)	ENSCARG00000048913 ##22
Euteleosteomorpha	ANCESTRAL SPECIES	66								ENSGT00940000165320	ENSGT00510000046732.A.d	ENSGT01030000234621.C.a.a.b	ENSGT00940000160350	ENSGT00940000153798.B.l	ENSGT01030000234621.C.a.b	ENSGT00390000005140.a	ENSGT00390000013989.b	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000167407	ENSGT00940000160751	ENSGT00940000171284	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135
Protacanthopterygii	ANCESTRAL SPECIES	546																ENSGT00940000157637.a ##22	ENSGT00940000164162
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	44	ENSGT00950000183144.A	ENSGT00940000156576.g	ENSGT00940000161147.c	ENSGT00390000012961.o	ENSGT00940000168882	ENSGT00510000047611.ub	ENSGT00940000157424.m.b.b	ENSGT00940000159817.jb.b	ENSGT00940000165320	ENSGT00510000046732.A.d.c.a.a	ENSGT01030000234621.C.a.a.b.m	ENSGT00940000160350.i	ENSGT00940000153798.B.k.b	ENSGT01030000234621.C.a.b.c	ENSGT00390000005140.a.p.a	ENSGT00940000157637.a.c ##22	ENSGT00940000158681.a.c	ENSGT00940000164162	ENSGT00960000186767	ENSGT00390000017913.`b.a.a	ENSGT00940000158168.m	ENSGT00390000015980.e	ENSGT00940000164637.y	ENSGT00940000163939.d	ENSGT00390000018660.k.a	ENSGT01100000263515.a.b.a.a.e	ENSGT00940000159135.e.b	ENSGT00940000155368.g.b.b	ENSGT00390000000970.g	ENSGT00940000156760.e.b.b	ENSGT00940000156760.f
Huchen	MODERN SPECIES	3052																ENSHHUG00000021545 ##22
Salmoninae_a	ANCESTRAL SPECIES	56	ENSGT00950000183144.A	ENSGT00940000156576.g	ENSGT00940000161147.c	ENSGT00390000012961.o	ENSGT00510000047611.ub	ENSGT00940000157424.m.b.b	ENSGT00940000159817.jb.b	ENSGT00940000165320	ENSGT00510000046732.A.d.c.a.a	ENSGT01030000234621.C.a.a.b.m	ENSGT00940000160350.i	ENSGT00940000153798.B.k.b	ENSGT01030000234621.C.a.b.c	ENSGT00390000005140.a.p.a	ENSGT00390000012340.h.a	ENSGT00940000157637.a.c ##22	ENSGT00940000158681.a.c	ENSGT00940000164162	ENSGT00960000186767	ENSGT00390000017913.`b.a.a	ENSGT00940000158168.m	ENSGT00390000015980.e	ENSGT00940000164637.y	ENSGT00940000163939.d	ENSGT00390000018660.k.a	ENSGT01100000263515.a.b.a.a.e	ENSGT00940000159135.f	ENSGT00940000159135.e.b	ENSGT00940000155368.g.b.b	ENSGT00390000000970.g	ENSGT00940000156760.f
Salmo	ANCESTRAL SPECIES	68									ENSGT00510000046732.A.d.c.a.a	ENSGT01030000234621.C.a.a.b.m	ENSGT00940000160350.i	ENSGT00940000153798.B.k.b	ENSGT01030000234621.C.a.b.c	ENSGT00390000005140.a.p.a	ENSGT00390000012340.h.a	ENSGT00940000157637.a.c ##22	ENSGT00940000158681.a.c	ENSGT00940000164162	ENSGT00960000186767	ENSGT00390000017913.`b.a.a	ENSGT00940000158168.m	ENSGT00390000015980.e	ENSGT00940000164637.y	ENSGT00940000163939.d	ENSGT00390000018660.k.a	ENSGT01100000263515.a.b.a.a.e	ENSGT00940000159135.e.b	ENSGT00940000155368.g.b.b	ENSGT00390000000970.g	ENSGT00940000156760.e.b.b	ENSGT00940000160473
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000082949	ENSSSAG00000000233	ENSSSAG00000112556	slit1b (ENSSSAG00000092807)	hoga1 (ENSSSAG00000110686)	ENSSSAG00000001468	ENSSSAG00000008959	ENSSSAG00000001886	ENSSSAG00000112578	ENSSSAG00000098092	ENSSSAG00000091296	ENSSSAG00000083628	ENSSSAG00000054738	ENSSSAG00000097274	ENSSSAG00000100135	ENSSSAG00000064152 ##22	ENSSSAG00000083043	ENSSSAG00000057876	ENSSSAG00000115384	ENSSSAG00000085561	ENSSSAG00000100476	pdcd10a (ENSSSAG00000068498)	ENSSSAG00000068526	ENSSSAG00000068532	ENSSSAG00000068529	ENSSSAG00000081861	ENSSSAG00000068542	ENSSSAG00000092865	ENSSSAG00000068573	tiparp (ENSSSAG00000068880)	ssr3 (ENSSSAG00000064882)
River trout	MODERN SPECIES	4	phox2a (ENSSTUG00000018975)	CLPB (ENSSTUG00000019064)	stard10 (ENSSTUG00000019966)	ENSSTUG00000019974	ENSSTUG00000020011	PDGFD (ENSSTUG00000020120)	PDE2A (ENSSTUG00000020401)	ENSSTUG00000024110	ENSSTUG00000024197	P2RY2 (ENSSTUG00000024219)	relt (ENSSTUG00000024230)	ENSSTUG00000024238	P2RY6 (ENSSTUG00000024244)	ENSSTUG00000024255	glod4 (ENSSTUG00000024278)	ENSSTUG00000024304 ##22	ENSSTUG00000024848	ENSSTUG00000032380	ENSSTUG00000032402	ENSSTUG00000032421	ENSSTUG00000032464	veph1 (ENSSTUG00000032474)	PTX3 (ENSSTUG00000032489)	ccnl1a (ENSSTUG00000032525)	ENSSTUG00000032630	ENSSTUG00000032633	ENSSTUG00000032641	ENSSTUG00000032652	tiparp (ENSSTUG00000032658)	ssr3 (ENSSTUG00000032661)	kcnab1a (ENSSTUG00000032680)
Oncorhynchus	ANCESTRAL SPECIES	115				ENSGT00510000047611.ub	ENSGT00940000157424.m.b.b	ENSGT00940000159817.jb.b	ENSGT00940000165320	ENSGT00510000046732.A.d.c.a.a	ENSGT00510000046732.A.d.c.a.b	ENSGT01030000234621.C.a.a.b.m	ENSGT00940000160350.i	ENSGT00940000153798.B.k.b	ENSGT01030000234621.C.a.b.c	ENSGT00390000005140.a.p.a.b	ENSGT00390000012340.h.a	ENSGT00940000157637.a.c ##22	ENSGT00940000158681.a.c	ENSGT00940000164162	ENSGT00390000017913.`b.a.a	ENSGT00940000158168.m	ENSGT00940000164637.y	ENSGT00940000163939.c.b	ENSGT00390000018660.k.a	ENSGT01100000263515.a.b.a.a.e
Rainbow trout	MODERN SPECIES	16	ENSOMYG00000040676	ENSOMYG00000057985	ENSOMYG00000069125	ENSOMYG00000058543	ENSOMYG00000040665	relt (ENSOMYG00000072701)	ENSOMYG00000040670	ENSOMYG00000076625	ENSOMYG00000068129	P2RY6 (ENSOMYG00000040638)	ENSOMYG00000027254	ENSOMYG00000054626	ENSOMYG00000040632	ENSOMYG00000062917	ENSOMYG00000069326	ENSOMYG00000041433 ##22	ENSOMYG00000040679	ENSOMYG00000067286	ENSOMYG00000077643	ENSOMYG00000065298	ENSOMYG00000059813	ENSOMYG00000049318	ENSOMYG00000053587	ENSOMYG00000050160	pdcd10a (ENSOMYG00000068806)	serpini1 (ENSOMYG00000073649)	ENSOMYG00000050638	ENSOMYG00000018042	ENSOMYG00000017227	ENSOMYG00000018061	ENSOMYG00000017256
Oncorhynchus_a	ANCESTRAL SPECIES	556																ENSGT00940000157637.a.c ##22	ENSGT00940000158681.a.c
Chinook salmon	MODERN SPECIES	5	RAB38 (ENSOTSG00005001752)	ctsc (ENSOTSG00005001762)	grm5b (ENSOTSG00005001811)	tyr (ENSOTSG00005001817)	ctsc (ENSOTSG00005001835)	chordc1a (ENSOTSG00005001865)	ENSOTSG00005001929	lrrc51 (ENSOTSG00005001932)	lamtor1 (ENSOTSG00005001943)	ENSOTSG00005001951	tomt (ENSOTSG00005001955)	anapc15 (ENSOTSG00005001957)	folr (ENSOTSG00005001959)	ENSOTSG00005001963	phox2a (ENSOTSG00005002076)	ENSOTSG00005002241 ##22	ccnl1a (ENSOTSG00005002581)	ENSOTSG00005003060	ENSOTSG00005003096	ENSOTSG00005003124	ENSOTSG00005003153	olfcj1 (ENSOTSG00005003163)	olfcg6 (ENSOTSG00005003169)	ENSOTSG00005003301	ENSOTSG00005003571	ENSOTSG00005003578	ENSOTSG00005003644	ENSOTSG00005003646	ENSOTSG00005003648	ENSOTSG00005003654	c18h3orf33 (ENSOTSG00005003656)
Coho salmon	MODERN SPECIES	9	ENSOKIG00005008369	ENSOKIG00005008360	STAG1 (ENSOKIG00005006133)	pccb (ENSOKIG00005005619)	nceh1a (ENSOKIG00005005565)	ENSOKIG00005005549	PPP2R3A (ENSOKIG00005004946)	PDCD10 (ENSOKIG00005004828)	ENSOKIG00005004816	ENSOKIG00005004803	PTX3 (ENSOKIG00005004794)	VEPH1 (ENSOKIG00005004779)	ENSOKIG00005004772	ENSOKIG00005004754	ENSOKIG00005004751	ENSOKIG00005004709 ##22	SLITRK3 (ENSOKIG00005004702)	ENSOKIG00005004698	ENSOKIG00005004683	ube2d1b (ENSOKIG00005004658)	CHAC2 (ENSOKIG00005004650)	ENSOKIG00005004643	ENSOKIG00005004599	ENSOKIG00005004591	ENTPD1 (ENSOKIG00005004543)	ccnl1a (ENSOKIG00005004382)	TIPARP (ENSOKIG00005004302)	ssr3 (ENSOKIG00005018628)	kcnab1a (ENSOKIG00005018523)	ENSOKIG00005018504	gmps (ENSOKIG00005018434)
Salmoninae	ANCESTRAL SPECIES	441										ENSGT00510000046732.A.d.c.b	ENSGT01030000234621.C.a.a.b.n	ENSGT00940000160350.j	ENSGT00940000153798.B.k.a.a	ENSGT01030000234621.C.a.b.d	ENSGT00390000005140.a.p.b	ENSGT00940000157637.a.d ##22	ENSGT00940000158681.a.d	ENSGT00940000160751	ENSGT00940000171284	ENSGT00390000017913.`b.a.b	ENSGT00940000158168.n	ENSGT00390000015980.f	ENSGT00940000164637.z.b	ENSGT00940000163939.c.a	ENSGT00390000018660.k.b	ENSGT01100000263515.a.b.a.a.f	ENSGT00940000159135.e.a	ENSGT01030000235461	ENSGT00940000162647	ENSGT00940000155368.g.b.a	ENSGT00390000000970.h
Huchen	MODERN SPECIES	2990																ENSHHUG00000049227 ##22
Salmoninae_a	ANCESTRAL SPECIES	3	ENSGT00940000161147.d	ENSGT00390000012961.p	ENSGT00510000047611.tb	ENSGT00940000157424.m.b.a	ENSGT00940000159817.jb.a	ENSGT00530000063695.a	ENSGT00940000160158	ENSGT00390000017288	ENSGT00940000163454.a.b	ENSGT00510000046732.A.d.d	ENSGT01030000234621.C.a.a.b.n	ENSGT00940000160350.j	ENSGT00940000153798.B.k.a.a	ENSGT01030000234621.C.a.b.d	ENSGT00390000005140.a.p.b	ENSGT00940000157637.a.d ##22	ENSGT00940000158681.a.d	ENSGT00940000160751	ENSGT00390000017913.`b.a.b	ENSGT00940000158168.n	ENSGT00390000015980.f	ENSGT00940000164637.z.b	ENSGT00940000163939.c.a	ENSGT00390000018660.k.b	ENSGT01100000263515.a.b.a.a.f	ENSGT00940000159135.e.a	ENSGT01030000235461	ENSGT00940000162647	ENSGT00940000155368.g.b.a	ENSGT00390000000970.h	ENSGT00940000156760.e.b.a
Salmo	ANCESTRAL SPECIES	7	ENSGT00940000156576.h	ENSGT00940000161147.d	ENSGT00390000012961.p	ENSGT00510000047611.tb	ENSGT00940000157424.m.b.a	ENSGT00940000159817.jb.a	ENSGT00530000063695.a	ENSGT00940000160158	ENSGT00390000017288	ENSGT00940000163454.a.b	ENSGT01030000234621.C.a.a.b.n	ENSGT00940000160350.j	ENSGT00940000153798.B.k.a.a	ENSGT01030000234621.C.a.b.d	ENSGT00390000005140.a.p.b	ENSGT00940000157637.a.d ##22	ENSGT00940000158681.a.d	ENSGT00940000171284	ENSGT00390000017913.`b.a.b	ENSGT00940000158168.n	ENSGT00390000015980.f	ENSGT00940000164637.z.b	ENSGT00940000163939.c.a	ENSGT00390000018660.k.b	ENSGT01100000263515.a.b.a.a.f	ENSGT00940000159135.e.a	ENSGT01030000235461	ENSGT00940000162647	ENSGT00940000155368.g.b.a	ENSGT00390000000970.h	ENSGT00940000156760.e.b.a
River trout	MODERN SPECIES	18	phox2a (ENSSTUG00000028722)	ENSSTUG00000028730	stard10 (ENSSTUG00000028777)	ARAP1 (ENSSTUG00000028826)	stard10 (ENSSTUG00000030284)	PDE2A (ENSSTUG00000030295)	cep57 (ENSSTUG00000030333)	ENSSTUG00000030356	mre11a (ENSSTUG00000030366)	ENSSTUG00000030420	P2RY2 (ENSSTUG00000030427)	relt (ENSSTUG00000030431)	ARHGEF17 (ENSSTUG00000030450)	P2RY6 (ENSSTUG00000030529)	ENSSTUG00000030534	ENSSTUG00000030571 ##22	SLITRK3 (ENSSTUG00000030621)	ENSSTUG00000030625	ENSSTUG00000030632	ENSSTUG00000030658	serpini1 (ENSSTUG00000030672)	ENSSTUG00000030713	ENSSTUG00000030718	ENSSTUG00000030729	veph1 (ENSSTUG00000030740)	PTX3 (ENSSTUG00000030821)	ccnl1a (ENSSTUG00000030830)	ENSSTUG00000031190	tiparp (ENSSTUG00000003778)	ssr3 (ENSSTUG00000003797)	KCNAB1 (ENSSTUG00000003840)
Oncorhynchus	ANCESTRAL SPECIES	14	ENSGT00940000156576.h	ENSGT00940000161147.d	ENSGT00390000012961.p	ENSGT00510000047611.tb	ENSGT00940000157424.m.b.a	ENSGT00940000159817.jb.a	ENSGT00530000063695.a.c	ENSGT00940000160158	ENSGT00390000017288	ENSGT00510000046732.A.d.d	ENSGT01030000234621.C.a.a.b.n	ENSGT00940000160350.j	ENSGT00940000153798.B.k.a.a	ENSGT01030000234621.C.a.b.d	ENSGT00390000005140.a.p.a.a.a	ENSGT00940000157637.a.d ##22	ENSGT00940000158681.a.d	ENSGT00940000160751	ENSGT00390000017913.`b.a.b	ENSGT00940000158168.n	ENSGT00390000015980.f	ENSGT00940000164637.z.b	ENSGT00940000163939.c.a	ENSGT00390000018660.k.b	ENSGT01100000263515.a.b.a.a.f	ENSGT00940000159135.f	ENSGT01100000264189	ENSGT00940000155368.g.b.a	ENSGT00390000000970.h	ENSGT00940000163711.b.d	ENSGT00390000006591.q.b
Rainbow trout	MODERN SPECIES	19	PDE2A (ENSOMYG00000052438)	ENSOMYG00000041664	ENSOMYG00000055597	ENSOMYG00000041669	ENSOMYG00000071424	ENSOMYG00000074841	ENSOMYG00000050246	ENSOMYG00000041615	ENSOMYG00000070489	ENSOMYG00000076390	relt (ENSOMYG00000052883)	ENSOMYG00000041633	P2RY6 (ENSOMYG00000041638)	ENSOMYG00000041644	ENSOMYG00000059371	ENSOMYG00000037249 ##22	ENSOMYG00000037246	ENSOMYG00000077174	WDR49 (ENSOMYG00000075748)	pdcd10a (ENSOMYG00000041678)	serpini1 (ENSOMYG00000028083)	ENSOMYG00000070997	ENSOMYG00000041721	ENSOMYG00000041711	ENSOMYG00000073677	PTX3 (ENSOMYG00000041693)	ENSOMYG00000055378	ENSOMYG00000041747	ENSOMYG00000041775	ENSOMYG00000074757	ENSOMYG00000068394
Northern pike	MODERN SPECIES	23	ccnb3 (ENSELUG00000000440)	ENSELUG00000034299	htr2cl1 (ENSELUG00000026854)	zgc:109889 (ENSELUG00000014559)	ENSELUG00000029980	ENSELUG00000014480	ENSELUG00000014415	chrd1 (ENSELUG00000014106)	ENSELUG00000014028	zgc:162171 (ENSELUG00000027083)	RAB39B (ENSELUG00000013957)	vbp1 (ENSELUG00000013935)	hdac8 (ENSELUG00000013857)	rps4x (ENSELUG00000013768)	ENSELUG00000013638	ENSELUG00000013542 ##22	arhgap36 (ENSELUG00000013403)	ENSELUG00000013283	rasl11a (ENSELUG00000013206)	gc2 (ENSELUG00000001313)	ENSELUG00000013023	COL4A5 (ENSELUG00000013002)	ENSELUG00000012957	ENSELUG00000031869	ENSELUG00000012911	ankrd46b (ENSELUG00000024842)	ENSELUG00000014617	ENSELUG00000014677	ENSELUG00000026024	efnb2a (ENSELUG00000033699)	ENSELUG00000026638
Acanthomorphata	ANCESTRAL SPECIES	37														ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000167407	ENSGT00940000160751	ENSGT00940000171284	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	8	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00940000171284	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135
Percomorphaceae	ANCESTRAL SPECIES	8	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00940000171284	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461
Percomorphaceae_B	ANCESTRAL SPECIES	13	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00940000171284	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461
Ovalentaria	ANCESTRAL SPECIES	8	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT01030000235461
Ovalentaria_B	ANCESTRAL SPECIES	11	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825
Pomacentridae	ANCESTRAL SPECIES	5	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00940000166116	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825
Pomacentridae_A	ANCESTRAL SPECIES	4	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825
Amphiprion	ANCESTRAL SPECIES	6	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825
Clown anemonefish	MODERN SPECIES	1859																ENSAOCG00000016778 ##22	SLITRK3 (ENSAOCG00000016790)	ENSAOCG00000002374
Orange clownfish	MODERN SPECIES	23	pid1 (ENSAPEG00000018849)	ENSAPEG00000018861	sphkap (ENSAPEG00000018947)	daw1 (ENSAPEG00000019015)	slc19a3b (ENSAPEG00000019072)	SLC19A3 (ENSAPEG00000019109)	agfg1a (ENSAPEG00000019154)	mrpl44 (ENSAPEG00000019210)	ENSAPEG00000019220	mffa (ENSAPEG00000019232)	megf6 (ENSAPEG00000019269)	ENSAPEG00000019382	MECOM (ENSAPEG00000019413)	SCN4B (ENSAPEG00000019472)	scn2b (ENSAPEG00000019491)	ENSAPEG00000019519 ##22	SLITRK3 (ENSAPEG00000019548)	ENSAPEG00000019562	ENSAPEG00000019603	ENSAPEG00000019713	WDR49 (ENSAPEG00000019760)	pdcd10a (ENSAPEG00000019821)	serpini1 (ENSAPEG00000019861)	ENSAPEG00000019874	ENSAPEG00000019910	ENSAPEG00000019942	veph1 (ENSAPEG00000019966)	PTX3 (ENSAPEG00000020003)	ccnl1a (ENSAPEG00000020021)	ENSAPEG00000020089	TIPARP (ENSAPEG00000020094)
Spiny chromis	MODERN SPECIES	1201															ENSAPOG00000010091	ENSAPOG00000010106 ##22
Bicolor damselfish	MODERN SPECIES	621																ENSSPAG00000015758 ##22	ENSSPAG00000015745	SLITRK3 (ENSSPAG00000015741)	ENSSPAG00000015712	ENSSPAG00000015656
Cichlidae	ANCESTRAL SPECIES	25	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162.t	ENSGT00940000163043.h	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	1824	daw1 (ENSACIG00000011748)	slc19a3b (ENSACIG00000011721)	SLC19A3 (ENSACIG00000011600)	agfg1a (ENSACIG00000011555)	mrpl44 (ENSACIG00000011506)	dnaaf1 (ENSACIG00000011486)	mffa (ENSACIG00000011411)	ENSACIG00000011379	ENSACIG00000011074	megf6 (ENSACIG00000010904)	MECOM (ENSACIG00000010849)	ENSACIG00000010831	SCN4B (ENSACIG00000010807)	scn2b (ENSACIG00000010797)	nansb (ENSACIG00000010775)	ENSACIG00000010744 ##22	ENSACIG00000010690 ##22	SLITRK3 (ENSACIG00000010682)	ENSACIG00000010654	ENSACIG00000010584
Midas cichlid	MODERN SPECIES	1824	slc19a3b (ENSACIG00000011721)	SLC19A3 (ENSACIG00000011600)	agfg1a (ENSACIG00000011555)	mrpl44 (ENSACIG00000011506)	dnaaf1 (ENSACIG00000011486)	mffa (ENSACIG00000011411)	ENSACIG00000011379	ENSACIG00000011074	megf6 (ENSACIG00000010904)	MECOM (ENSACIG00000010849)	ENSACIG00000010831	SCN4B (ENSACIG00000010807)	scn2b (ENSACIG00000010797)	nansb (ENSACIG00000010775)	ENSACIG00000010744 ##22	ENSACIG00000010690 ##22	SLITRK3 (ENSACIG00000010682)	ENSACIG00000010654	ENSACIG00000010584
Pseudocrenilabrinae	ANCESTRAL SPECIES	22	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162.t	ENSGT00940000163043.h	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	25	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a.f	ENSGT00950000183022.a.a.a.e	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162.t	ENSGT00940000163043.h	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368
Haplochromini	ANCESTRAL SPECIES	33	ENSGT00940000162537	ENSGT00940000167030	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a.f	ENSGT00950000183022.a.a.a.e	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162.t	ENSGT00940000163043.h	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368
Burton s mouthbrooder	MODERN SPECIES	952																ENSHBUG00000022512 ##22
Haplochromini_A	ANCESTRAL SPECIES	20	ENSGT00940000162537	ENSGT00940000167030	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a.f	ENSGT00950000183022.a.a.a.e	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162.t	ENSGT00940000163043.h	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368.bb
Haplochromini_B	ANCESTRAL SPECIES	9	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a.f	ENSGT00950000183022.a.a.a.e	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162.t	ENSGT00940000163043.h	ENSGT00940000167407	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368.bb
Eastern happy	MODERN SPECIES	5	slc19a3b (ENSACLG00000005840)	SLC19A3 (ENSACLG00000005772)	SLC19A3 (ENSACLG00000005552)	agfg1a (ENSACLG00000005347)	mrpl44 (ENSACLG00000005317)	ENSACLG00000005312	mffa (ENSACLG00000005267)	ENSACLG00000005241	megf6 (ENSACLG00000005179)	MECOM (ENSACLG00000004787)	ENSACLG00000004776	SCN4B (ENSACLG00000004769)	scn2b (ENSACLG00000004737)	ENSACLG00000004686	ENSACLG00000004654	ENSACLG00000004640 ##22	SLITRK3 (ENSACLG00000004629)	ENSACLG00000004483	ENSACLG00000004442	baxa (ENSACLG00000004345)	ENSACLG00000004331	ENSACLG00000004220	WDR49 (ENSACLG00000003905)	pdcd10a (ENSACLG00000003887)	serpini1 (ENSACLG00000003868)	ENSACLG00000003853	ENSACLG00000003825	ENSACLG00000003814	PTX3 (ENSACLG00000003802)	ENSACLG00000003799	veph1 (ENSACLG00000003779)
Zebra mbuna	MODERN SPECIES	1096	grk7b (ENSMZEG00005008128)	rnf7 (ENSMZEG00005008213)	ENSMZEG00005008229	ENSMZEG00005008241	RASA2 (ENSMZEG00005008267)	ZBTB38 (ENSMZEG00005008311)	fbxo36a (ENSMZEG00005008321)	trip12 (ENSMZEG00005008424)	dner (ENSMZEG00005008604)	pid1 (ENSMZEG00005008627)	sphkap (ENSMZEG00005008646)	daw1 (ENSMZEG00005008686)	slc19a3b (ENSMZEG00005008753)	ENSMZEG00005010519	ENSMZEG00005010538	ENSMZEG00005010564 ##22	ENSMZEG00005010573	SLITRK3 (ENSMZEG00005010585)	ENSMZEG00005010588	ENSMZEG00005010621	baxa (ENSMZEG00005010658)	ENSMZEG00005010896	ENSMZEG00005010907	WDR49 (ENSMZEG00005010928)	pdcd10a (ENSMZEG00005010953)	serpini1 (ENSMZEG00005010980)	ENSMZEG00005010991	ENSMZEG00005011004	ENSMZEG00005011024	veph1 (ENSMZEG00005011041)	PTX3 (ENSMZEG00005011083)
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	298																ENSPNYG00000010237 ##22	SLITRK3 (ENSPNYG00000010251)	ENSPNYG00000010260	ENSPNYG00000010299	ENSPNYG00000010360	WDR49 (ENSPNYG00000010373)	pdcd10a (ENSPNYG00000010422)	serpini1 (ENSPNYG00000010454)	ENSPNYG00000010480	ENSPNYG00000010502	ENSPNYG00000010528	veph1 (ENSPNYG00000010566)	PTX3 (ENSPNYG00000010607)	ccnl1a (ENSPNYG00000010611)	ENSPNYG00000010684	TIPARP (ENSPNYG00000010697)
P. nyererei	MODERN SPECIES	942																ENSPNYG00000008159 ##22
Lyretail cichlid	MODERN SPECIES	357	sphkap (ENSNBRG00000003261)	daw1 (ENSNBRG00000003214)	slc19a3b (ENSNBRG00000003172)	SLC19A3 (ENSNBRG00000003069)	agfg1a (ENSNBRG00000003048)	mrpl44 (ENSNBRG00000003041)	dnaaf1 (ENSNBRG00000003013)	mffa (ENSNBRG00000002975)	ENSNBRG00000002925	megf6 (ENSNBRG00000002814)	MECOM (ENSNBRG00000002765)	ENSNBRG00000002749	SCN4B (ENSNBRG00000002738)	scn2b (ENSNBRG00000002731)	ENSNBRG00000002700	ENSNBRG00000002653 ##22	SLITRK3 (ENSNBRG00000002644)	ENSNBRG00000002606	ENSNBRG00000002509	WDR49 (ENSNBRG00000002439)	pdcd10a (ENSNBRG00000002411)	serpini1 (ENSNBRG00000002372)	ENSNBRG00000002351	ENSNBRG00000002317	ENSNBRG00000002301	ENSNBRG00000002274	PTX3 (ENSNBRG00000002253)	veph1 (ENSNBRG00000002195)	ccnl1a (ENSNBRG00000002147)	ENSNBRG00000002119	tiparp (ENSNBRG00000002101)
Nile tilapia	MODERN SPECIES	5	dner (ENSONIG00000005634)	pid1 (ENSONIG00000005632)	sphkap (ENSONIG00000005630)	ENSONIG00000005618	slc19a3b (ENSONIG00000039314)	SLC19A3 (ENSONIG00000005612)	agfg1a (ENSONIG00000005608)	mrpl44 (ENSONIG00000005607)	ENSONIG00000005606	mffa (ENSONIG00000005604)	megf6 (ENSONIG00000005590)	ENSONIG00000005597	MECOM (ENSONIG00000005587)	SCN4B (ENSONIG00000005586)	scn2b (ENSONIG00000005584)	ENSONIG00000005580 ##22	ENSONIG00000030611	ENSONIG00000014952	ENSONIG00000034892	ENSONIG00000030516	ENSONIG00000032359	ENSONIG00000024160	WDR49 (ENSONIG00000005556)	pdcd10a (ENSONIG00000005553)	serpini1 (ENSONIG00000005552)	ENSONIG00000032201	ENSONIG00000005548	pqlc2l (ENSONIG00000005546)	veph1 (ENSONIG00000005544)	PTX3 (ENSONIG00000037163)	ENSONIG00000041653
Atherinomorphae	ANCESTRAL SPECIES	15	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT01000000221723	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368
Oryzias	ANCESTRAL SPECIES	8	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT01000000221723	ENSGT00940000164162	ENSGT00960000186767	ENSGT00940000160751	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000178902	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368
Oryzias_a	ANCESTRAL SPECIES	8	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000156971.A	ENSGT00940000159256.o	ENSGT00940000157208	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT01000000221723	ENSGT00940000164162	ENSGT00980000198573.a.b.ab.b.a.a	ENSGT00940000171284	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970
Japanese Medaka HdrR	MODERN SPECIES	4	sphkap (ENSORLG00000011771)	daw1 (ENSORLG00000011792)	slc19a3b (ENSORLG00000027805)	SLC19A3 (ENSORLG00000011814)	agfg1a (ENSORLG00000011859)	mrpl44 (ENSORLG00000011871)	dnaaf1 (ENSORLG00000025596)	mffa (ENSORLG00000011938)	megf6 (ENSORLG00000011989)	ENSORLG00000012013	MECOM (ENSORLG00000012077)	ENSORLG00000012083	scn2b (ENSORLG00000012094)	ENSORLG00000024556	ENSORLG00000022219	bche (ENSORLG00000020161) ##22	SLITRK3 (ENSORLG00000012102)	ENSORLG00000012288	ENSORLG00000023706	ENSORLG00000012312	serpini1 (ENSORLG00000012374)	ENSORLG00000024315	ENSORLG00000012393	veph1 (ENSORLG00000012452)	PTX3 (ENSORLG00000026149)	ccnl1a (ENSORLG00000012502)	ENSORLG00000027313	ENSORLG00000025029	ENSORLG00000029262	TIPARP (ENSORLG00000023309)	ENSORLG00000025556
Chinese medaka	MODERN SPECIES	978																ENSOSIG00000007288 ##22	SLITRK3 (ENSOSIG00000007289)	ENSOSIG00000007290	ENSOSIG00000007322
Oryzias_b	ANCESTRAL SPECIES	14	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000172375	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00960000186767	ENSGT00940000160751	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000178902	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b
Indian medaka	MODERN SPECIES	12	ENSOMEG00000000082	sphkap (ENSOMEG00000000836)	ENSOMEG00000003843	slc19a3b (ENSOMEG00000003864)	SLC19A3 (ENSOMEG00000000089)	agfg1a (ENSOMEG00000003910)	ENSOMEG00000003915	mrpl44 (ENSOMEG00000003920)	ENSOMEG00000003928	mffa (ENSOMEG00000000092)	ENSOMEG00000003975	megf6 (ENSOMEG00000004159)	MECOM (ENSOMEG00000004276)	SCN4B (ENSOMEG00000004311)	scn2b (ENSOMEG00000004328)	ENSOMEG00000004341 ##22	SLITRK3 (ENSOMEG00000004360)	ENSOMEG00000004409	ENSOMEG00000004428	ENSOMEG00000004474	serpini1 (ENSOMEG00000004490)	ENSOMEG00000004503	ENSOMEG00000004565	ENSOMEG00000004575	PTX3 (ENSOMEG00000004580)	veph1 (ENSOMEG00000004616)	ccnl1a (ENSOMEG00000004676)	ENSOMEG00000004695	TIPARP (ENSOMEG00000004712)	ssr3 (ENSOMEG00000004731)	KCNAB1 (ENSOMEG00000004823)
Javanese ricefish	MODERN SPECIES	4	dner (ENSOJAG00000011824)	pid1 (ENSOJAG00000011807)	ENSOJAG00000011790	sphkap (ENSOJAG00000011747)	ENSOJAG00000011596	slc19a3b (ENSOJAG00000011438)	agfg1a (ENSOJAG00000011384)	mrpl44 (ENSOJAG00000011370)	ENSOJAG00000011362	mffa (ENSOJAG00000011338)	ENSOJAG00000011326	megf6 (ENSOJAG00000010744)	MECOM (ENSOJAG00000009788)	SCN4B (ENSOJAG00000009714)	scn2b (ENSOJAG00000009707)	ENSOJAG00000009680 ##22	SLITRK3 (ENSOJAG00000009670)	ENSOJAG00000008161	ENSOJAG00000007894	serpini1 (ENSOJAG00000007758)	ENSOJAG00000007736	ENSOJAG00000007721	PTX3 (ENSOJAG00000007708)	veph1 (ENSOJAG00000007679)	ccnl1a (ENSOJAG00000007650)	ENSOJAG00000007626	TIPARP (ENSOJAG00000007617)	ssr3 (ENSOJAG00000007577)	KCNAB1 (ENSOJAG00000007464)	gmps (ENSOJAG00000006419)	slc33a1 (ENSOJAG00000006317)
Cyprinodontiformes	ANCESTRAL SPECIES	12	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT01000000221723	ENSGT00940000164162	ENSGT00940000163043	ENSGT00940000171284	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b
Aplocheiloidei	ANCESTRAL SPECIES	8	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000167755	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000156971.A	ENSGT00940000159256.o	ENSGT00940000157208	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162.q	ENSGT00960000186767	ENSGT00940000160751	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637
Mangrove rivulus	MODERN SPECIES	75	dner (ENSKMAG00000002947)	pid1 (ENSKMAG00000002986)	sphkap (ENSKMAG00000003011)	ENSKMAG00000003048	slc19a3b (ENSKMAG00000003084)	SLC19A3 (ENSKMAG00000003092)	agfg1a (ENSKMAG00000003111)	mrpl44 (ENSKMAG00000003162)	ENSKMAG00000003170	mffa (ENSKMAG00000003189)	megf6 (ENSKMAG00000003245)	ENSKMAG00000003332	MECOM (ENSKMAG00000003372)	SCN4B (ENSKMAG00000003529)	scn2b (ENSKMAG00000003569)	ENSKMAG00000003577 ##22	SLITRK3 (ENSKMAG00000003589)	ENSKMAG00000003602	ENSKMAG00000003659	ENSKMAG00000003679	serpini1 (ENSKMAG00000003723)	ENSKMAG00000003771	ENSKMAG00000003791
Turquoise killifish	MODERN SPECIES	31																ENSNFUG00015015078 ##22
Cyprinodontoidei	ANCESTRAL SPECIES	9	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT01000000221723	ENSGT00940000164162	ENSGT00940000167407	ENSGT00940000171284	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b
NAME_4	ANCESTRAL SPECIES	48	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000172375	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000156971.A	ENSGT00940000159256.o	ENSGT00940000157208	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00940000171284	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473
Mummichog	MODERN SPECIES	2505																ENSFHEG00000002262 ##22	ENSFHEG00000002259	SLITRK3 (ENSFHEG00000002253)	ENSFHEG00000002242	ENSFHEG00000002222
Sheepshead minnow	MODERN SPECIES	581										ENSCVAG00000019365	ENSCVAG00000019158	ENSCVAG00000018998	MECOM (ENSCVAG00000018979)	SCN4B (ENSCVAG00000018872)	scn2b (ENSCVAG00000018828)	ENSCVAG00000018800 ##22	SLITRK3 (ENSCVAG00000018787)
Poeciliinae	DUPLICATION
Poeciliinae	ANCESTRAL SPECIES	14	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a.i ##22	ENSGT00940000157023	ENSGT00940000158681.a	ENSGT01000000221723	ENSGT00940000164162	ENSGT00940000163043	ENSGT00940000167407	ENSGT00940000171284	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368
Poecilia	ANCESTRAL SPECIES	2	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000172375	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a.i ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00940000167407	ENSGT00940000171284	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f
NAME_6	ANCESTRAL SPECIES	529																ENSGT00940000157637.a.i ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043
Amazon molly	MODERN SPECIES	612																ENSPFOG00000012527 ##22	SLITRK3 (ENSPFOG00000020886)	ENSPFOG00000012686
Sailfin molly	MODERN SPECIES	3343																ENSPLAG00000022268 ##22
Guppy	MODERN SPECIES	443	pid1 (ENSPREG00000017909)	sphkap (ENSPREG00000017860)	ENSPREG00000017811	slc19a3b (ENSPREG00000017793)	SLC19A3 (ENSPREG00000017763)	agfg1a (ENSPREG00000017678)	mrpl44 (ENSPREG00000017644)	ENSPREG00000017641	mffa (ENSPREG00000017621)	ENSPREG00000017608	ENSPREG00000017601	megf6 (ENSPREG00000017431)	MECOM (ENSPREG00000017329)	SCN4B (ENSPREG00000017299)	scn2b (ENSPREG00000017282)	ENSPREG00000017265 ##22	SLITRK3 (ENSPREG00000017257)	ENSPREG00000017202	ENSPREG00000017185	ENSPREG00000017109	serpini1 (ENSPREG00000017073)	ENSPREG00000017052	ENSPREG00000017027	PTX3 (ENSPREG00000017014)	veph1 (ENSPREG00000016977)	ccnl1a (ENSPREG00000016928)	ENSPREG00000016911	TIPARP (ENSPREG00000016895)	ssr3 (ENSPREG00000016878)	KCNAB1 (ENSPREG00000016824)	ENSPREG00000016759
Platyfish	MODERN SPECIES	9	dner (ENSXMAG00000010820)	pid1 (ENSXMAG00000021164)	sphkap (ENSXMAG00000010815)	daw1 (ENSXMAG00000010806)	slc19a3b (ENSXMAG00000021000)	SLC19A3 (ENSXMAG00000010801)	agfg1a (ENSXMAG00000010790)	mrpl44 (ENSXMAG00000010787)	ENSXMAG00000010785	mffa (ENSXMAG00000010780)	ENSXMAG00000010771	megf6 (ENSXMAG00000010755)	MECOM (ENSXMAG00000010745)	SCN4B (ENSXMAG00000010741)	scn2b (ENSXMAG00000023404)	ENSXMAG00000017287 ##22	ENSXMAG00000021272 ##22	BCHE (ENSXMAG00000023563)	SLITRK3 (ENSXMAG00000019627)	ENSXMAG00000023127	ENSXMAG00000025539	ENSXMAG00000027355	ENSXMAG00000017226	ENSXMAG00000029864	ENSXMAG00000017223	serpini1 (ENSXMAG00000017196)	ENSXMAG00000017194	ENSXMAG00000017189	PTX3 (ENSXMAG00000017185)	veph1 (ENSXMAG00000017171)	ccnl1a (ENSXMAG00000025483)
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000157637.a.j ##22
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000157637.a.j ##22
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000157637.a.j ##22
Sailfin molly	MODERN SPECIES	3662																ENSPLAG00000010087 ##22
Platyfish	MODERN SPECIES	9	pid1 (ENSXMAG00000021164)	sphkap (ENSXMAG00000010815)	daw1 (ENSXMAG00000010806)	slc19a3b (ENSXMAG00000021000)	SLC19A3 (ENSXMAG00000010801)	agfg1a (ENSXMAG00000010790)	mrpl44 (ENSXMAG00000010787)	ENSXMAG00000010785	mffa (ENSXMAG00000010780)	ENSXMAG00000010771	megf6 (ENSXMAG00000010755)	MECOM (ENSXMAG00000010745)	SCN4B (ENSXMAG00000010741)	scn2b (ENSXMAG00000023404)	ENSXMAG00000017287 ##22	ENSXMAG00000021272 ##22	BCHE (ENSXMAG00000023563)	SLITRK3 (ENSXMAG00000019627)	ENSXMAG00000023127	ENSXMAG00000025539	ENSXMAG00000027355	ENSXMAG00000017226	ENSXMAG00000029864	ENSXMAG00000017223	serpini1 (ENSXMAG00000017196)	ENSXMAG00000017194	ENSXMAG00000017189	PTX3 (ENSXMAG00000017185)	veph1 (ENSXMAG00000017171)	ccnl1a (ENSXMAG00000025483)	ENSXMAG00000024244
Percomorphaceae_C	ANCESTRAL SPECIES	9	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00940000171284	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461
Percomorphaceae_D	ANCESTRAL SPECIES	9	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825
Anabantaria	ANCESTRAL SPECIES	9	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000167407	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368
Anabantoidei	ANCESTRAL SPECIES	14	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000167407	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637.w	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b
Climbing perch	MODERN SPECIES	4	dner (ENSATEG00000005042)	PID1 (ENSATEG00000027875)	ENSATEG00000028952	sphkap (ENSATEG00000004866)	ENSATEG00000004821	SLC19A3 (ENSATEG00000004539)	agfg1a (ENSATEG00000004522)	mrpl44 (ENSATEG00000004508)	ENSATEG00000004478	mffa (ENSATEG00000004349)	ENSATEG00000004166	ENSATEG00000004035	ENSATEG00000003940	ENSATEG00000003837	ENSATEG00000003832	ENSATEG00000003818 ##22	ENSATEG00000003613	ENSATEG00000029835	ENSATEG00000003486	pdcd10a (ENSATEG00000028772)	serpini1 (ENSATEG00000003455)	ENSATEG00000003428	ENSATEG00000003399	ENSATEG00000003384	ENSATEG00000003367	ENSATEG00000003353	VEPH1 (ENSATEG00000003338)	ENSATEG00000002998	TIPARP (ENSATEG00000002945)	ssr3 (ENSATEG00000002923)	kcnab1a (ENSATEG00000002685)
Siamese fighting fish	MODERN SPECIES	4	dner (ENSBSLG00000020837)	pid1 (ENSBSLG00000020838)	ENSBSLG00000020839	sphkap (ENSBSLG00000020841)	daw1 (ENSBSLG00000020849)	slc19a3b (ENSBSLG00000020866)	SLC19A3 (ENSBSLG00000020868)	agfg1a (ENSBSLG00000020883)	mrpl44 (ENSBSLG00000020904)	ENSBSLG00000020905	mffa (ENSBSLG00000020906)	ENSBSLG00000020909	MECOM (ENSBSLG00000020917)	SCN4B (ENSBSLG00000021542)	scn2b (ENSBSLG00000021555)	ENSBSLG00000021563 ##22	SLITRK3 (ENSBSLG00000021573)	ENSBSLG00000021610	ENSBSLG00000022797	ENSBSLG00000022833	pdcd10a (ENSBSLG00000022868)	serpini1 (ENSBSLG00000022935)	ENSBSLG00000023114	ENSBSLG00000023129	ENSBSLG00000023182	ENSBSLG00000023190	ENSBSLG00000023203	pdcd10a (ENSBSLG00000023205)	ENSBSLG00000023207	ENSBSLG00000023217	veph1 (ENSBSLG00000023219)
Zig-zag eel	MODERN SPECIES	4	dner (ENSMAMG00000005054)	pid1 (ENSMAMG00000025383)	sphkap (ENSMAMG00000028523)	daw1 (ENSMAMG00000004992)	slc19a3b (ENSMAMG00000004962)	SLC19A3 (ENSMAMG00000004947)	agfg1a (ENSMAMG00000004933)	mrpl44 (ENSMAMG00000004925)	ENSMAMG00000004917	mffa (ENSMAMG00000004895)	ENSMAMG00000027909	ENSMAMG00000004770	ENSMAMG00000004665	ENSMAMG00000004625	ENSMAMG00000028460	ENSMAMG00000004598 ##22	ENSMAMG00000004589	ENSMAMG00000004512	ENSMAMG00000028088	ENSMAMG00000004478	ENSMAMG00000004378	pdcd10a (ENSMAMG00000004345)	serpini1 (ENSMAMG00000004322)	ENSMAMG00000004283	ENSMAMG00000004259	ENSMAMG00000025628	VEPH1 (ENSMAMG00000004227)	ENSMAMG00000004160	ENSMAMG00000004139	ENSMAMG00000004117	TIPARP (ENSMAMG00000004108)
Carangaria	ANCESTRAL SPECIES	8	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00940000167309	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000156971.A	ENSGT00940000159256.o	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368
Carangaria_A	ANCESTRAL SPECIES	10	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000167309	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368
Seriola	ANCESTRAL SPECIES	107															ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000163043	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368
Greater amberjack	MODERN SPECIES	235															scn2b (ENSSDUG00000010002)	ENSSDUG00000009975 ##22	SLITRK3 (ENSSDUG00000009964)	ENSSDUG00000009932	ENSSDUG00000009848	ENSSDUG00000009832	ENSSDUG00000009778
Yellowtail amberjack	MODERN SPECIES	2578															scn2b (ENSSLDG00000012310)	ENSSLDG00000012339 ##22	SLITRK3 (ENSSLDG00000012363)	ENSSLDG00000012377	ENSSLDG00000012431	ENSSLDG00000012496	WDR49 (ENSSLDG00000012524)	pdcd10a (ENSSLDG00000012561)	serpini1 (ENSSLDG00000012594)	ENSSLDG00000012619	ENSSLDG00000012638	ENSSLDG00000012670	veph1 (ENSSLDG00000012700)	PTX3 (ENSSLDG00000012805)
Barramundi perch	DUPLICATION
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	181				slc19a3b (ENSLCAG00010015596)	agfg1a (ENSLCAG00010015603)	mrpl44 (ENSLCAG00010015607)	dnaaf1 (ENSLCAG00010015608)	mffa (ENSLCAG00010015613)	megf6 (ENSLCAG00010015623)	ENSLCAG00010015632	MECOM (ENSLCAG00010015644)	SCN4B (ENSLCAG00010015669)	scn2b (ENSLCAG00010015673)	ENSLCAG00010015691 ##22	ENSLCAG00010015707 ##22	ENSLCAG00010015712 ##22	SLITRK3 (ENSLCAG00010015720)	ENSLCAG00010015740	ENSLCAG00010015850	WDR49 (ENSLCAG00010015871)	pdcd10a (ENSLCAG00010015883)	serpini1 (ENSLCAG00010015896)	ENSLCAG00010015900	ENSLCAG00010015905	ENSLCAG00010015914	ENSLCAG00010015918	veph1 (ENSLCAG00010015923)	PTX3 (ENSLCAG00010015932)
Barramundi perch	MODERN SPECIES	181					slc19a3b (ENSLCAG00010015596)	agfg1a (ENSLCAG00010015603)	mrpl44 (ENSLCAG00010015607)	dnaaf1 (ENSLCAG00010015608)	mffa (ENSLCAG00010015613)	megf6 (ENSLCAG00010015623)	ENSLCAG00010015632	MECOM (ENSLCAG00010015644)	SCN4B (ENSLCAG00010015669)	scn2b (ENSLCAG00010015673)	ENSLCAG00010015691 ##22	ENSLCAG00010015707 ##22	ENSLCAG00010015712 ##22	SLITRK3 (ENSLCAG00010015720)	ENSLCAG00010015740	ENSLCAG00010015850	WDR49 (ENSLCAG00010015871)	pdcd10a (ENSLCAG00010015883)	serpini1 (ENSLCAG00010015896)	ENSLCAG00010015900	ENSLCAG00010015905	ENSLCAG00010015914	ENSLCAG00010015918	veph1 (ENSLCAG00010015923)	PTX3 (ENSLCAG00010015932)
Barramundi perch	MODERN SPECIES	181						slc19a3b (ENSLCAG00010015596)	agfg1a (ENSLCAG00010015603)	mrpl44 (ENSLCAG00010015607)	dnaaf1 (ENSLCAG00010015608)	mffa (ENSLCAG00010015613)	megf6 (ENSLCAG00010015623)	ENSLCAG00010015632	MECOM (ENSLCAG00010015644)	SCN4B (ENSLCAG00010015669)	scn2b (ENSLCAG00010015673)	ENSLCAG00010015691 ##22	ENSLCAG00010015707 ##22	ENSLCAG00010015712 ##22	SLITRK3 (ENSLCAG00010015720)	ENSLCAG00010015740	ENSLCAG00010015850	WDR49 (ENSLCAG00010015871)	pdcd10a (ENSLCAG00010015883)	serpini1 (ENSLCAG00010015896)	ENSLCAG00010015900	ENSLCAG00010015905	ENSLCAG00010015914	ENSLCAG00010015918	veph1 (ENSLCAG00010015923)	PTX3 (ENSLCAG00010015932)
Pleuronectoidei	ANCESTRAL SPECIES	13	ENSGT00940000156517	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000156971.A	ENSGT00940000159256.o	ENSGT00940000157208	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00390000000970	ENSGT00940000156760.f
Turbot	MODERN SPECIES	15	dner (ENSSMAG00000020181)	PID1 (ENSSMAG00000032701)	sphkap (ENSSMAG00000020227)	ENSSMAG00000020243	SLC19A3 (ENSSMAG00000020280)	agfg1a (ENSSMAG00000020284)	mrpl44 (ENSSMAG00000020295)	ENSSMAG00000020296	ENSSMAG00000020303	mffa (ENSSMAG00000020310)	megf6 (ENSSMAG00000020332)	ENSSMAG00000020341	ENSSMAG00000020343	ENSSMAG00000020386	ENSSMAG00000020387	ENSSMAG00000020396 ##22	ENSSMAG00000020398	ENSSMAG00000020408	ENSSMAG00000024061	WDR49 (ENSSMAG00000020428)	pdcd10a (ENSSMAG00000020433)	serpini1 (ENSSMAG00000020441)	ENSSMAG00000029459	ENSSMAG00000020457	ENSSMAG00000020463	ENSSMAG00000020466	PTX3 (ENSSMAG00000020473)	ENSSMAG00000020476	ENSSMAG00000029670	ENSSMAG00000022648	TIPARP (ENSSMAG00000020479)
Eupercaria	ANCESTRAL SPECIES	7	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000156971.A	ENSGT00940000159256.o	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00960000186767	ENSGT00940000160751	ENSGT00940000171284	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368
Eupecaria_A	ANCESTRAL SPECIES	9	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000156971.A	ENSGT00940000159256.o	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00960000186767	ENSGT00940000160751	ENSGT00940000171284	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368
Ballan wrasse	MODERN SPECIES	197											megf6 (ENSLBEG00000004885)	ENSLBEG00000004961	MECOM (ENSLBEG00000005011)	SCN4B (ENSLBEG00000005134)	scn2b (ENSLBEG00000005156)	ENSLBEG00000005187 ##22	SLITRK3 (ENSLBEG00000005217)	ENSLBEG00000005308
Eupecaria_B	ANCESTRAL SPECIES	9	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000156971.A	ENSGT00940000159256.o	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00960000186767	ENSGT00940000167407	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368
Perciformes	ANCESTRAL SPECIES	10	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000156971.A	ENSGT00940000159256.o	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970
Perciformes_a	ANCESTRAL SPECIES	9	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000156971.A	ENSGT00940000159256.o	ENSGT00940000165767	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000167407	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461	ENSGT00940000155368	ENSGT00390000000970
Pike perch	MODERN SPECIES	97	pid1 (ENSSLUG00000021989)	sphkap (ENSSLUG00000021994)	daw1 (ENSSLUG00000022001)	slc19a3b (ENSSLUG00000022029)	SLC19A3 (ENSSLUG00000022214)	agfg1a (ENSSLUG00000022224)	mrpl44 (ENSSLUG00000022237)	ENSSLUG00000022239	mffa (ENSSLUG00000022240)	megf6 (ENSSLUG00000022256)	ENSSLUG00000022340	MECOM (ENSSLUG00000022351)	ENSSLUG00000022372	SCN4B (ENSSLUG00000022375)	scn2b (ENSSLUG00000022379)	ENSSLUG00000022391 ##22	SLITRK3 (ENSSLUG00000022408)	ENSSLUG00000022437	ENSSLUG00000022534
Channel bull blenny	MODERN SPECIES	4	trip12 (ENSCGOG00000016751)	dner (ENSCGOG00000019546)	ENSCGOG00000019550	pid1 (ENSCGOG00000019552)	SLC19A3 (ENSCGOG00000019553)	agfg1a (ENSCGOG00000019560)	mrpl44 (ENSCGOG00000019564)	ENSCGOG00000019565	mffa (ENSCGOG00000019566)	megf6 (ENSCGOG00000019567)	ENSCGOG00000019572	ENSCGOG00000019623	MECOM (ENSCGOG00000019626)	SCN4B (ENSCGOG00000004072)	ENSCGOG00000004090	ENSCGOG00000004137 ##22	SLITRK3 (ENSCGOG00000004453)	ENSCGOG00000004536	ENSCGOG00000006312	ENSCGOG00000006314	pdcd10a (ENSCGOG00000006318)	serpini1 (ENSCGOG00000006326)	ENSCGOG00000006427	ENSCGOG00000006429	ENSCGOG00000006431	veph1 (ENSCGOG00000006443)	PTX3 (ENSCGOG00000006518)	ccnl1a (ENSCGOG00000006520)	ENSCGOG00000006572	TIPARP (ENSCGOG00000006581)	ssr3 (ENSCGOG00000006585)
Cottioidei	ANCESTRAL SPECIES	4	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT00940000174694	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970
Lumpfish	MODERN SPECIES	4	daw1 (ENSCLMG00005014054)	slc19a3b (ENSCLMG00005014073)	SLC19A3 (ENSCLMG00005014076)	agfg1a (ENSCLMG00005014087)	mrpl44 (ENSCLMG00005014122)	ENSCLMG00005014123	mffa (ENSCLMG00005014124)	megf6 (ENSCLMG00005014125)	ENSCLMG00005014126	MECOM (ENSCLMG00005014153)	ENSCLMG00005014155	SCN4B (ENSCLMG00005014156)	scn2b (ENSCLMG00005014162)	ENSCLMG00005014163	ENSCLMG00005014165	ENSCLMG00005014170 ##22	SLITRK3 (ENSCLMG00005014241)	ENSCLMG00005014254	ENSCLMG00005014260	WDR49 (ENSCLMG00005014262)	pdcd10a (ENSCLMG00005014266)	serpini1 (ENSCLMG00005014267)	ENSCLMG00005014268	ENSCLMG00005014269	ENSCLMG00005014270	veph1 (ENSCLMG00005014271)	PTX3 (ENSCLMG00005014275)	ccnl1a (ENSCLMG00005014288)	ENSCLMG00005014363	TIPARP (ENSCLMG00005014365)	ssr3 (ENSCLMG00005001348)
Stickleback	MODERN SPECIES		dner (ENSGACG00000007444)	pid1 (ENSGACG00000007440)	sphkap (ENSGACG00000007428)	ENSGACG00000007395	SLC19A3 (ENSGACG00000007388)	agfg1a (ENSGACG00000007374)	mrpl44 (ENSGACG00000007362)	ENSGACG00000007361	mffa (ENSGACG00000007332)	ENSGACG00000007320	megf6 (ENSGACG00000007302)	MECOM (ENSGACG00000007276)	ENSGACG00000007274	SCN4B (ENSGACG00000007272)	scn2b (ENSGACG00000007267)	ENSGACG00000007230 ##22	ENSGACG00000007228	SLITRK3 (ENSGACG00000007226)	ENSGACG00000007181	ENSGACG00000007177	pdcd10a (ENSGACG00000007171)	serpini1 (ENSGACG00000007161)	ENSGACG00000007144	ENSGACG00000007140	PTX3 (ENSGACG00000007125)	veph1 (ENSGACG00000007117)	ccnl1a (ENSGACG00000007101)	TIPARP (ENSGACG00000007095)	ENSGACG00000007093	ssr3 (ENSGACG00000007071)	kcnab1a (ENSGACG00000007068)
Eupecaria_C	ANCESTRAL SPECIES	7	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00940000167407	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	5	ENSGT00510000048154	ENSGT00940000153313.A	ENSGT00940000162537	ENSGT00940000172375	ENSGT00950000183022.a.a.b.a	ENSGT00950000183022.a.a.a	ENSGT00940000155511.n.a	ENSGT00390000016956	ENSGT00940000158494	ENSGT00390000009776.o	ENSGT00940000159256.o	ENSGT00940000156971.A	ENSGT00940000157208	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT00940000157637.a ##22	ENSGT00940000158681.a	ENSGT00940000164162	ENSGT00960000186767	ENSGT00940000160751	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970
European seabass	MODERN SPECIES	3	sphkap (ENSDLAG00005001219)	daw1 (ENSDLAG00005001203)	SLC19A3 (ENSDLAG00005001067)	agfg1a (ENSDLAG00005001014)	mrpl44 (ENSDLAG00005001001)	ENSDLAG00005031103	mffa (ENSDLAG00005029436)	ENSDLAG00005000995	ENSDLAG00005000990	ENSDLAG00005000987	ENSDLAG00005000910	ENSDLAG00005000901	ENSDLAG00005000898	ENSDLAG00005033504	ENSDLAG00005000896	ENSDLAG00005000891 ##22	ENSDLAG00005035047	ENSDLAG00005000751	ENSDLAG00005034010	WDR49 (ENSDLAG00005000733)	pdcd10a (ENSDLAG00005000725)	serpini1 (ENSDLAG00005000720)	ENSDLAG00005000719	ENSDLAG00005000713	ENSDLAG00005031780	ENSDLAG00005028846	VEPH1 (ENSDLAG00005000686)	ENSDLAG00005000662	ENSDLAG00005029556	TIPARP (ENSDLAG00005000653)	ssr3 (ENSDLAG00005034114)
Large yellow croaker	MODERN SPECIES	479	ENSLCRG00005017212	pid1 (ENSLCRG00005017215)	sphkap (ENSLCRG00005017217)	ENSLCRG00005017231	slc19a3b (ENSLCRG00005017295)	SLC19A3 (ENSLCRG00005017299)	agfg1a (ENSLCRG00005017303)	mrpl44 (ENSLCRG00005017304)	ENSLCRG00005017305	mffa (ENSLCRG00005017306)	megf6 (ENSLCRG00005017309)	ENSLCRG00005017318	MECOM (ENSLCRG00005017320)	SCN4B (ENSLCRG00005017971)	ENSLCRG00005017972	ENSLCRG00005017974 ##22	SLITRK3 (ENSLCRG00005017979)	ENSLCRG00005018027	ENSLCRG00005019408	ENSLCRG00005019411	pdcd10a (ENSLCRG00005019412)	serpini1 (ENSLCRG00005019413)	ENSLCRG00005019419	ENSLCRG00005019422	ENSLCRG00005019425	veph1 (ENSLCRG00005019426)	PTX3 (ENSLCRG00005019431)	ccnl1a (ENSLCRG00005019432)	ENSLCRG00005019436	TIPARP (ENSLCRG00005019437)	ssr3 (ENSLCRG00005019439)
Gilthead seabream	MODERN SPECIES	11	ENSSAUG00010021504	dner (ENSSAUG00010021508)	pid1 (ENSSAUG00010021517)	sphkap (ENSSAUG00010021523)	daw1 (ENSSAUG00010021528)	slc19a3b (ENSSAUG00010021535)	agfg1a (ENSSAUG00010021539)	mrpl44 (ENSSAUG00010021544)	ENSSAUG00010021546	MIFFB (ENSSAUG00010021549)	megf6 (ENSSAUG00010021572)	ENSSAUG00010021742	MECOM (ENSSAUG00010021758)	SCN4B (ENSSAUG00010021844)	scn2b (ENSSAUG00010021847)	ENSSAUG00010021851 ##22	SLITRK3 (ENSSAUG00010021853)	ENSSAUG00010021902	ENSSAUG00010024020	WDR49 (ENSSAUG00010024025)	pdcd10a (ENSSAUG00010024031)	serpini1 (ENSSAUG00010024035)	ENSSAUG00010024038	ENSSAUG00010024040	ENSSAUG00010024042	veph1 (ENSSAUG00010024046)	PTX3 (ENSSAUG00010024052)	ENSSAUG00010024054	ccnl1a (ENSSAUG00010024057)	ENSSAUG00010024059	TIPARP (ENSSAUG00010024062)
Tetraodontidae	DUPLICATION
Tetraodontidae	ANCESTRAL SPECIES	42															ENSGT01030000234556.b.b.b	ENSGT00940000157637.a.m ##22	ENSGT00940000157637.a.n.a ##22	ENSGT00940000158681.a	ENSGT00940000157637.a.n.b ##22	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591.p	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a
Fugu	DUPLICATION
Fugu	MODERN SPECIES	2	tomt (ENSTRUG00000009353)	lamtor1 (ENSTRUG00000023989)	folr (ENSTRUG00000009430)	inppl1a (ENSTRUG00000009438)	phox2a (ENSTRUG00000009916)	CLPB (ENSTRUG00000009957)	ENSTRUG00000010035	sst1.1 (ENSTRUG00000010048)	ece2b (ENSTRUG00000010049)	eif4h (ENSTRUG00000010290)	ENSTRUG00000031938	rffl (ENSTRUG00000010440)	ENSTRUG00000029733 ##22	ENSTRUG00000028826	SCN4B (ENSTRUG00000001355)	ENSTRUG00000005322 ##22	ENSTRUG00000005267 ##22	SLITRK3 (ENSTRUG00000030858)	ENSTRUG00000001673 ##22	ENSTRUG00000027051	ENSTRUG00000032226	ENSTRUG00000033099	ENSTRUG00000026202	ENSTRUG00000001552	ENSTRUG00000028082	serpini1 (ENSTRUG00000012444)	ENSTRUG00000012663	ENSTRUG00000012672	ptx3 (ENSTRUG00000027736)	veph1 (ENSTRUG00000026457)	ccnl1a (ENSTRUG00000012879)
Fugu	MODERN SPECIES	2	ENSTRUG00000012672	ENSTRUG00000012663	serpini1 (ENSTRUG00000012444)	ENSTRUG00000028082	ENSTRUG00000001552	ENSTRUG00000026202	ENSTRUG00000033099	ENSTRUG00000032226	ENSTRUG00000027051	ENSTRUG00000001673 ##22	SLITRK3 (ENSTRUG00000030858)	ENSTRUG00000005267 ##22	ENSTRUG00000005322 ##22	SCN4B (ENSTRUG00000001355)	ENSTRUG00000028826	ENSTRUG00000029733 ##22	rffl (ENSTRUG00000010440)	ENSTRUG00000031938	eif4h (ENSTRUG00000010290)	ece2b (ENSTRUG00000010049)	sst1.1 (ENSTRUG00000010048)	ENSTRUG00000010035	CLPB (ENSTRUG00000009957)	phox2a (ENSTRUG00000009916)	inppl1a (ENSTRUG00000009438)	folr (ENSTRUG00000009430)	lamtor1 (ENSTRUG00000023989)	tomt (ENSTRUG00000009353)	ENSTRUG00000022827	naalad2 (ENSTRUG00000008489) ##34	ENSTRUG00000030580
Tetraodon	MODERN SPECIES	26	itgav (ENSTNIG00000019388)	ENSTNIG00000019389	ENSTNIG00000019390	ENSTNIG00000019391	plekhb1 (ENSTNIG00000000824)	MPP4 (ENSTNIG00000003775)	ENSTNIG00000003776	lcp1 (ENSTNIG00000003777)	itm2bb (ENSTNIG00000001726)	med4 (ENSTNIG00000003778)	TAAR1 (ENSTNIG00000001005)	ENSTNIG00000004516	SCN4B (ENSTNIG00000006815)	ENSTNIG00000000569	scn2b (ENSTNIG00000006818)	ENSTNIG00000006819 ##22	SLITRK3 (ENSTNIG00000019735)	ENSTNIG00000014914	ENSTNIG00000014913 ##22	ENSTNIG00000018845	rpl34 (ENSTNIG00000018846)	ostc (ENSTNIG00000018847)	etnppl (ENSTNIG00000018848)	ENSTNIG00000007182	larp7 (ENSTNIG00000007183)	ENSTNIG00000002074	plin2 (ENSTNIG00000007184)	DENND4C (ENSTNIG00000007185)	ENSTNIG00000007186	plaa (ENSTNIG00000007187)	ENSTNIG00000007188
Tetraodontidae	DUPLICATION
Tetraodontidae	ANCESTRAL SPECIES	42														ENSGT01030000234556.b.b.b	ENSGT00940000157637.a.m ##22	ENSGT00940000157637.a.n.a ##22	ENSGT00940000158681.a	ENSGT00940000157637.a.n.b ##22	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591.p	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001683	ENSTNIG00000006250	gga1 (ENSTNIG00000006248)	ENSTNIG00000006247	ENSTNIG00000006246	MPV17L (ENSTNIG00000006245)	bmerb1 (ENSTNIG00000006244)	ENSTNIG00000006243	panx1b (ENSTNIG00000006242)	ENSTNIG00000006231	TRAK1 (ENSTNIG00000006230)	si:ch211-225p5.8 (ENSTNIG00000006224)	ssr1 (ENSTNIG00000001825)	ezh2 (ENSTNIG00000001819)	ENSTNIG00000006211 ##22	ENSTNIG00000006210 ##22	ENSTNIG00000006209	galcb (ENSTNIG00000006200)	ENSTNIG00000006199	ENSTNIG00000006198	ENSTNIG00000006197	TAAR1 (ENSTNIG00000001226)	TAAR1 (ENSTNIG00000005193)	TAAR1 (ENSTNIG00000000218)	TAAR1 (ENSTNIG00000001471)	ENSTNIG00000006156	MMP17 (ENSTNIG00000006155)	ULK1 (ENSTNIG00000006154)	crkl (ENSTNIG00000006153)	MMP17 (ENSTNIG00000006152)	ENSTNIG00000000082
Tetraodon	MODERN SPECIES	26	ENSTNIG00000006251	ENSTNIG00000001683	ENSTNIG00000006250	gga1 (ENSTNIG00000006248)	ENSTNIG00000006247	ENSTNIG00000006246	MPV17L (ENSTNIG00000006245)	bmerb1 (ENSTNIG00000006244)	ENSTNIG00000006243	panx1b (ENSTNIG00000006242)	ENSTNIG00000006231	TRAK1 (ENSTNIG00000006230)	si:ch211-225p5.8 (ENSTNIG00000006224)	ssr1 (ENSTNIG00000001825)	ezh2 (ENSTNIG00000001819)	ENSTNIG00000006211 ##22	ENSTNIG00000006210 ##22	ENSTNIG00000006209	galcb (ENSTNIG00000006200)	ENSTNIG00000006199	ENSTNIG00000006198	ENSTNIG00000006197	TAAR1 (ENSTNIG00000001226)	TAAR1 (ENSTNIG00000005193)	TAAR1 (ENSTNIG00000000218)	TAAR1 (ENSTNIG00000001471)	ENSTNIG00000006156	MMP17 (ENSTNIG00000006155)	ULK1 (ENSTNIG00000006154)	crkl (ENSTNIG00000006153)	MMP17 (ENSTNIG00000006152)
Fugu	MODERN SPECIES	2	lamtor1 (ENSTRUG00000023989)	folr (ENSTRUG00000009430)	inppl1a (ENSTRUG00000009438)	phox2a (ENSTRUG00000009916)	CLPB (ENSTRUG00000009957)	ENSTRUG00000010035	sst1.1 (ENSTRUG00000010048)	ece2b (ENSTRUG00000010049)	eif4h (ENSTRUG00000010290)	ENSTRUG00000031938	rffl (ENSTRUG00000010440)	ENSTRUG00000029733 ##22	ENSTRUG00000028826	SCN4B (ENSTRUG00000001355)	ENSTRUG00000005322 ##22	ENSTRUG00000005267 ##22	SLITRK3 (ENSTRUG00000030858)	ENSTRUG00000001673 ##22	ENSTRUG00000027051	ENSTRUG00000032226	ENSTRUG00000033099	ENSTRUG00000026202	ENSTRUG00000001552	ENSTRUG00000028082	serpini1 (ENSTRUG00000012444)	ENSTRUG00000012663	ENSTRUG00000012672	ptx3 (ENSTRUG00000027736)	veph1 (ENSTRUG00000026457)	ccnl1a (ENSTRUG00000012879)	TIPARP (ENSTRUG00000022644)
Tetraodontidae	ANCESTRAL SPECIES	42												ENSGT01030000234556.b.b.b	ENSGT00940000157637.a.m ##22	ENSGT00940000157637.a.n.a ##22	ENSGT00940000158681.a	ENSGT00940000157637.a.n.b ##22	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591.p	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069	ENSGT00390000007230.b	ENSGT00390000012388
Fugu	MODERN SPECIES	2	inppl1a (ENSTRUG00000009438)	phox2a (ENSTRUG00000009916)	CLPB (ENSTRUG00000009957)	ENSTRUG00000010035	sst1.1 (ENSTRUG00000010048)	ece2b (ENSTRUG00000010049)	eif4h (ENSTRUG00000010290)	ENSTRUG00000031938	rffl (ENSTRUG00000010440)	ENSTRUG00000029733 ##22	ENSTRUG00000028826	SCN4B (ENSTRUG00000001355)	ENSTRUG00000005322 ##22	ENSTRUG00000005267 ##22	SLITRK3 (ENSTRUG00000030858)	ENSTRUG00000001673 ##22	ENSTRUG00000027051	ENSTRUG00000032226	ENSTRUG00000033099	ENSTRUG00000026202	ENSTRUG00000001552	ENSTRUG00000028082	serpini1 (ENSTRUG00000012444)	ENSTRUG00000012663	ENSTRUG00000012672	ptx3 (ENSTRUG00000027736)	veph1 (ENSTRUG00000026457)	ccnl1a (ENSTRUG00000012879)	TIPARP (ENSTRUG00000022644)	ssr3 (ENSTRUG00000021463)	KCNAB1 (ENSTRUG00000007233)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001211	ENSTNIG00000007190	NFIB (ENSTNIG00000007189)	ENSTNIG00000007188	plaa (ENSTNIG00000007187)	ENSTNIG00000007186	DENND4C (ENSTNIG00000007185)	plin2 (ENSTNIG00000007184)	ENSTNIG00000002074	larp7 (ENSTNIG00000007183)	ENSTNIG00000007182	etnppl (ENSTNIG00000018848)	ostc (ENSTNIG00000018847)	rpl34 (ENSTNIG00000018846)	ENSTNIG00000018845	ENSTNIG00000014913 ##22	ENSTNIG00000014914	SLITRK3 (ENSTNIG00000019735)	ENSTNIG00000006819 ##22	scn2b (ENSTNIG00000006818)	ENSTNIG00000000569	SCN4B (ENSTNIG00000006815)	ENSTNIG00000004516	TAAR1 (ENSTNIG00000001005)	med4 (ENSTNIG00000003778)	itm2bb (ENSTNIG00000001726)	lcp1 (ENSTNIG00000003777)	ENSTNIG00000003776	MPP4 (ENSTNIG00000003775)	plekhb1 (ENSTNIG00000000824)	ENSTNIG00000019391
Tiger tail seahorse	MODERN SPECIES	345	CCDC92B (ENSHCOG00000016472)	cluha (ENSHCOG00000016570)	pafah1b1a (ENSHCOG00000016601)	mettl16 (ENSHCOG00000016671)	MNT (ENSHCOG00000016685)	ENSHCOG00000016706	limk1a (ENSHCOG00000016918)	NIPSNAP2 (ENSHCOG00000016936)	psph (ENSHCOG00000016969)	phkg1a (ENSHCOG00000017011)	chchd2 (ENSHCOG00000017016)	im:7138535 (ENSHCOG00000017023)	ENSHCOG00000017033	SCN4B (ENSHCOG00000017040)	scn2b (ENSHCOG00000017055)	ENSHCOG00000017061 ##22	SLITRK3 (ENSHCOG00000017069)	ENSHCOG00000017096	ENSHCOG00000017113
Pinecone sodierfish	MODERN SPECIES	4	dner (ENSMMDG00005005038)	pid1 (ENSMMDG00005005030)	sphkap (ENSMMDG00005005021)	ENSMMDG00005005008	SLC19A3 (ENSMMDG00005004592)	agfg1a (ENSMMDG00005004441)	mrpl44 (ENSMMDG00005004424)	dnaaf1 (ENSMMDG00005017881)	mffa (ENSMMDG00005017878)	ENSMMDG00005017807	megf6 (ENSMMDG00005017805)	MECOM (ENSMMDG00005017681)	ENSMMDG00005017675	SCN4B (ENSMMDG00005017668)	scn2b (ENSMMDG00005017663)	ENSMMDG00005017557 ##22	SLITRK3 (ENSMMDG00005017546)	ENSMMDG00005017541	ENSMMDG00005017537	ENSMMDG00005017534	ENSMMDG00005017531	ENSMMDG00005017529	pdcd10a (ENSMMDG00005017522)	serpini1 (ENSMMDG00005017521)	ENSMMDG00005017519	ENSMMDG00005017516	ENSMMDG00005017514	ENSMMDG00005017513	PTX3 (ENSMMDG00005017497)	veph1 (ENSMMDG00005017493)	ccnl1a (ENSMMDG00005017462)
Cod	MODERN SPECIES	7	rps6kb1b (ENSGMOG00000008995)	slc33a1 (ENSGMOG00000009015)	gmps (ENSGMOG00000009029)	ENSGMOG00000009045	KCNAB1 (ENSGMOG00000009066)	ssr3 (ENSGMOG00000009082)	tiparp (ENSGMOG00000034698)	ENSGMOG00000009099	PTX3 (ENSGMOG00000025297)	ENSGMOG00000009109	ENSGMOG00000027732	ENSGMOG00000030358	ENSGMOG00000009158	ENSGMOG00000007093	ENSGMOG00000016151	ENSGMOG00000004207 ##22	ENSGMOG00000015041	ENSGMOG00000014938	ENSGMOG00000029739	pdcd10a (ENSGMOG00000000725)	ENSGMOG00000000710	ENSGMOG00000028393	ENSGMOG00000008516	ENSGMOG00000036591	ENSGMOG00000008508	ENSGMOG00000008503	ppp2r1bb (ENSGMOG00000008498)	ENSGMOG00000008491	LAYN (ENSGMOG00000008488)	ENSGMOG00000008475	zgc:162608 (ENSGMOG00000034620)
Osteoglossiformes	ANCESTRAL SPECIES	14	ENSGT00950000182988.a.b.a.a	ENSGT00530000063816.c.b	ENSGT00390000010063	ENSGT00530000064411.a	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00390000008610.a.a	ENSGT00940000165320	ENSGT00510000046732.A.c	ENSGT00940000160350	ENSGT01030000234621.C.a.a.b	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT00390000005140.a.s	ENSGT00940000157637.a ##22	ENSGT00940000158681	ENSGT00940000164162	ENSGT00940000163043	ENSGT00940000167407	ENSGT00940000160751	ENSGT00390000017913	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660	ENSGT00940000169328.a.a	ENSGT00940000159135	ENSGT00940000162647
P. kingsleyae	MODERN SPECIES	46	pak1 (ENSPKIG00000023941)	aqp11 (ENSPKIG00000023955)	clns1a (ENSPKIG00000023965)	RSF1 (ENSPKIG00000023983)	aamdc (ENSPKIG00000024002)	INTS4 (ENSPKIG00000024017)	rps3 (ENSPKIG00000024046)	KCTD14 (ENSPKIG00000024063)	ENSPKIG00000024081	FCHSD2 (ENSPKIG00000024091)	relt (ENSPKIG00000024107)	P2RY2 (ENSPKIG00000024120)	ARHGEF17 (ENSPKIG00000024134)	P2RY6 (ENSPKIG00000024152)	fam168a (ENSPKIG00000024158)	ENSPKIG00000024183 ##22	SLITRK3 (ENSPKIG00000024192)	ENSPKIG00000024202	ENSPKIG00000024216	ENSPKIG00000024255	WDR49 (ENSPKIG00000024303)	pdcd10b (ENSPKIG00000024386)	serpini1 (ENSPKIG00000024487)	ENSPKIG00000024500	ENSPKIG00000024512	ENSPKIG00000024528	veph1 (ENSPKIG00000024540)	ENSPKIG00000024554	ccnl1a (ENSPKIG00000024570)	ENSPKIG00000024595	tiparp (ENSPKIG00000024616)
Asian bonytongue	MODERN SPECIES	1	GDPD4 (ENSSFOG00015002682)	pak1 (ENSSFOG00015002635)	aqp11 (ENSSFOG00015032092)	clns1a (ENSSFOG00015002589)	RSF1 (ENSSFOG00015002501)	aamdc (ENSSFOG00015029619)	INTS4 (ENSSFOG00015002354)	KCTD14 (ENSSFOG00015002323)	rps3 (ENSSFOG00015002290)	ENSSFOG00015002286	FCHSD2 (ENSSFOG00015002267)	relt (ENSSFOG00015031194)	ARHGEF17 (ENSSFOG00015027586)	P2RY6 (ENSSFOG00015033260)	fam168a (ENSSFOG00015031466)	ENSSFOG00015002162 ##22	ENSSFOG00015002120	ENSSFOG00015002099	ENSSFOG00015002069	WDR49 (ENSSFOG00015001998)	pdcd10b (ENSSFOG00015032682)	serpini1 (ENSSFOG00015001922)	ENSSFOG00015032645	ENSSFOG00015001879	ENSSFOG00015001829	PTX3 (ENSSFOG00015028578)	veph1 (ENSSFOG00015028924)	ENSSFOG00015028603	ccnl1a (ENSSFOG00015001732)	ENSSFOG00015001719	TIPARP (ENSSFOG00015029700)
Spotted gar	MODERN SPECIES	652	gfm1 (ENSLOCG00000003778)	MFSD1 (ENSLOCG00000003756)	ENSLOCG00000017387	schip1 (ENSLOCG00000003742)	IL12A (ENSLOCG00000003721)	ENSLOCG00000003695	ENSLOCG00000017386	smc4 (ENSLOCG00000003657)	ENSLOCG00000003624	kpna4 (ENSLOCG00000003608)	B3GALNT1 (ENSLOCG00000003594)	ppm1la (ENSLOCG00000003576)	nmd3 (ENSLOCG00000003561)	sptssb (ENSLOCG00000017385)	otol1b (ENSLOCG00000003547)	ENSLOCG00000003535 ##22	SLITRK3 (ENSLOCG00000017384)	ENSLOCG00000003493	ENSLOCG00000003462	WDR49 (ENSLOCG00000003432)	pdcd10b (ENSLOCG00000003413)	serpini1 (ENSLOCG00000003396)	ENSLOCG00000003382	ENSLOCG00000003367	PTX3 (ENSLOCG00000003357)	veph1 (ENSLOCG00000003346)	ENSLOCG00000003330	ccnl1a (ENSLOCG00000003314)	LEKR1 (ENSLOCG00000003307)	tiparp (ENSLOCG00000003293)	ssr3 (ENSLOCG00000003280)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000157637.a ##22
Hagfish	MODERN SPECIES	1281														ENSEBUG00000008081	ENSEBUG00000001414	ENSEBUG00000012494 ##22	ENSEBUG00000001465	ENSEBUG00000016538	ZNHIT1 (ENSEBUG00000014516) #10	ENSEBUG00000012313	ENSEBUG00000005965	ENSEBUG00000001065
Ciona	ANCESTRAL SPECIES																	ENSGT00940000157637 #22
Ciona savignyi	DUPLICATION
Ciona savignyi	MODERN SPECIES	330	ENSCSAVG00000011084	ENSCSAVG00000011085	ENSCSAVG00000011102	ENSCSAVG00000011105	ENSCSAVG00000011106	ENSCSAVG00000011108	ENSCSAVG00000011109	ENSCSAVG00000011114	ENSCSAVG00000011126	ENSCSAVG00000011142	ENSCSAVG00000011144	ENSCSAVG00000011145	ENSCSAVG00000011146	ENSCSAVG00000011149	ENSCSAVG00000011150	ENSCSAVG00000011153 #22	ENSCSAVG00000011178 #22	ENSCSAVG00000011179	ENSCSAVG00000011188	ENSCSAVG00000011189	ENSCSAVG00000011191	ENSCSAVG00000011193	ENSCSAVG00000011218	ENSCSAVG00000011219	ENSCSAVG00000011222	ENSCSAVG00000011223	ENSCSAVG00000011231	ENSCSAVG00000011248	ENSCSAVG00000011254	ENSCSAVG00000011256	ENSCSAVG00000011257
Ciona savignyi	MODERN SPECIES	330	ENSCSAVG00000011085	ENSCSAVG00000011102	ENSCSAVG00000011105	ENSCSAVG00000011106	ENSCSAVG00000011108	ENSCSAVG00000011109	ENSCSAVG00000011114	ENSCSAVG00000011126	ENSCSAVG00000011142	ENSCSAVG00000011144	ENSCSAVG00000011145	ENSCSAVG00000011146	ENSCSAVG00000011149	ENSCSAVG00000011150	ENSCSAVG00000011153 #22	ENSCSAVG00000011178 #22	ENSCSAVG00000011179	ENSCSAVG00000011188	ENSCSAVG00000011189	ENSCSAVG00000011191	ENSCSAVG00000011193	ENSCSAVG00000011218	ENSCSAVG00000011219	ENSCSAVG00000011222	ENSCSAVG00000011223	ENSCSAVG00000011231	ENSCSAVG00000011248	ENSCSAVG00000011254	ENSCSAVG00000011256	ENSCSAVG00000011257	ENSCSAVG00000011261
Ciona intestinalis	MODERN SPECIES	131								ENSCING00000019314	ENSCING00000016961	zf(ring)-23 (ENSCING00000002832)	atf3 (ENSCING00000002838)	ENSCING00000019747	ENSCING00000024234	ENSCING00000023386	ENSCING00000021554	ENSCING00000016954 #22	ENSCING00000024068	ENSCING00000019504	ENSCING00000003550	ENSCING00000016742	ENSCING00000003549	ENSCING00000018250	ENSCING00000024299	ENSCING00000003546	ENSCING00000003545	ENSCING00000019438	zf(fyve)-9 (ENSCING00000003542)	ENSCING00000017588	ENSCING00000003541	ENSCING00000020040	ENSCING00000003537