Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00950000183068.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00390000016992 #10	ENSGT00940000163020 #11	ENSGT00940000160294 #9	ENSGT00390000005685 #12	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT00410000025802.g.b ##26	ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Sciuridae	ANCESTRAL SPECIES	27														ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Eurasian red squirrel	MODERN SPECIES	156	MTCP1 (ENSSVLG00005016077) #7	ENSSVLG00005016124 #8	F8 (ENSSVLG00005016200) #9	ENSSVLG00005016424 #10	ENSSVLG00005016435 #11	SMIM9 (ENSSVLG00005016452) #12	MPP1 (ENSSVLG00005016498) #13	DKC1 (ENSSVLG00005016642) #14	GAB3 (ENSSVLG00005016708) #15	ENSSVLG00005016985 #16	ENSSVLG00005017050 #17	ENSSVLG00005017122 #18	ENSSVLG00005017166 #19	ENSSVLG00005017218 #20	IKBKG (ENSSVLG00005017293) #21	G6PD (ENSSVLG00005017520) #22	FAM3A (ENSSVLG00005017584) #23	SLC10A3 (ENSSVLG00005017774) #24	UBL4A (ENSSVLG00005017819) #25	LAGE3 (ENSSVLG00005017858) #26	PLXNA3 (ENSSVLG00005017881) #27	FAM50A (ENSSVLG00005017921) #28	GDI1 (ENSSVLG00005017962) #29	ATP6AP1 (ENSSVLG00005018016) #30	TAFAZZIN (ENSSVLG00005018196) #31	DNASE1L1 (ENSSVLG00005018343) #32	ENSSVLG00005018375 #33	FLNA (ENSSVLG00005018546) #34	EMD (ENSSVLG00005019520) #35	TKTL1 (ENSSVLG00005017318) #36	TEX28 (ENSSVLG00005017596) #37
Marmotini	ANCESTRAL SPECIES	83														ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A.e #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37	ENSGT01030000234549.a.a.a.b
Marmotini_b	ANCESTRAL SPECIES	124														ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT01050000244850.A.a #27	ENSGT00390000004735.A.e #28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37	ENSGT01030000234549.a.a.a.b
Squirrel	MODERN SPECIES	409															ENSSTOG00000027400 #19	G6PD (ENSSTOG00000021077) #22	IKBKG (ENSSTOG00000011082) #21	FAM3A (ENSSTOG00000022234) #23	SLC10A3 (ENSSTOG00000026515) #24	UBL4A (ENSSTOG00000022150) #25	PLXNA3 (ENSSTOG00000003432) #27	ENSSTOG00000004448 #28	GDI1 (ENSSTOG00000004429) #29	ATP6AP1 (ENSSTOG00000004401) #30	TAFAZZIN (ENSSTOG00000011873) #31	DNASE1L1 (ENSSTOG00000011867) #32	ENSSTOG00000011857 #33	EMD (ENSSTOG00000014689) #35	FLNA (ENSSTOG00000005036) #34	TKTL1 (ENSSTOG00000005014) #36	TEX28 (ENSSTOG00000022078) #37
Alpin marmot	MODERN SPECIES	136														ENSMMMG00000014778 #19	IKBKG (ENSMMMG00000014671) #21	G6PD (ENSMMMG00000014645) #22	FAM3A (ENSMMMG00000014550) #23	SLC10A3 (ENSMMMG00000014545) #24	UBL4A (ENSMMMG00000014537) #25	PLXNA3 (ENSMMMG00000014513) #27	FAM50A (ENSMMMG00000014490) #28	GDI1 (ENSMMMG00000014475) #29	TAFAZZIN (ENSMMMG00000014302) #31	DNASE1L1 (ENSMMMG00000014299) #32	ENSMMMG00000014279 #33	EMD (ENSMMMG00000014270) #35	FLNA (ENSMMMG00000010080) #34	TKTL1 (ENSMMMG00000010036) #36	TEX28 (ENSMMMG00000010023) #37	ENSMMMG00000010010	MECP2 (ENSMMMG00000009970)
Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.B.a.a ##28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360.r.a.a	ENSGT00390000000360.r.b	ENSGT00390000006885.a #7	ENSGT00390000012647.d	ENSGT00940000154783.f #8	ENSGT00940000160294 #9	ENSGT00940000158744 #13	ENSGT00510000047092 #14	ENSGT00940000159803 #15	ENSGT01050000244815.B.a.a #19	ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.B.a.a ##28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT00940000162843 #37
Hystricomorpha_b	ANCESTRAL SPECIES	84															ENSGT00530000063808.a #21	ENSGT00530000063435.a #22	ENSGT00950000183004.a.a.a.b #23	ENSGT00950000182808.b.b #24	ENSGT00730000111022 #25	ENSGT00410000025802.g.a #26	ENSGT01050000244850.A.a #27	ENSGT00390000004735.B.a.a ##28	ENSGT00950000182994.B.a.a.a #29	ENSGT00940000156650 #30	ENSGT00390000018621 #31	ENSGT00950000182846.a.a.a.a.a #32	ENSGT00390000003897.s.b.a.b.b #33	ENSGT00390000002034 #35	ENSGT00940000153588.b #34	ENSGT00940000162426 #36	ENSGT01030000234549.a.a.a.b
Degu	DUPLICATION
Degu	MODERN SPECIES	259															IKBKG (ENSODEG00000005911) #21	ENSODEG00000006077 #22	FAM3A (ENSODEG00000006189) #23	UBL4A (ENSODEG00000006287) #25	ENSODEG00000006315 #26	PLXNA3 (ENSODEG00000006368) #27	ENSODEG00000006510 ##28	GDI1 (ENSODEG00000006550) #29	ATP6AP1 (ENSODEG00000003643) #30	TAFAZZIN (ENSODEG00000003758) #31	DNASE1L1 (ENSODEG00000003830) #32	ENSODEG00000003868 #33	EMD (ENSODEG00000003890) #35	FLNA (ENSODEG00000004055) #34	TKTL1 (ENSODEG00000004431) #36	ENSODEG00000004454	ENSODEG00000004473
Degu	MODERN SPECIES	226							ENSODEG00000020167	PCDHAC2 (ENSODEG00000012473)	PCDHB1 (ENSODEG00000019919)	PCDHB2 (ENSODEG00000013246)	ENSODEG00000012569	PCDHB4 (ENSODEG00000011616)	ENSODEG00000012750	ENSODEG00000011904	ENSODEG00000011435	ENSODEG00000012347 #22	ENSODEG00000012003	PCDHB6 (ENSODEG00000011685)	ENSODEG00000011819	PCDHB7 (ENSODEG00000014075)	PCDHB13 (ENSODEG00000012740)	ENSODEG00000012330	ENSODEG00000011147	ENSODEG00000011579	ENSODEG00000011345	PCDHB15 (ENSODEG00000013503)	SLC25A2 (ENSODEG00000020131)	ENSODEG00000014858	PCDHGA2 (ENSODEG00000014760)	PCDHGA3 (ENSODEG00000011289)	PCDHGB1 (ENSODEG00000012466)
Long-tailed chinchilla	MODERN SPECIES	287													ENSCLAG00000017603 #19	ENSCLAG00000017457	IKBKG (ENSCLAG00000003721) #21	G6PD (ENSCLAG00000003284) #22	FAM3A (ENSCLAG00000002528) #23	SLC10A3 (ENSCLAG00000002307) #24	UBL4A (ENSCLAG00000002161) #25	LAGE3 (ENSCLAG00000002127) #26	PLXNA3 (ENSCLAG00000001910) #27	ENSCLAG00000002733 ##28	GDI1 (ENSCLAG00000002425) #29	ATP6AP1 (ENSCLAG00000002132) #30	TAFAZZIN (ENSCLAG00000010970) #31	DNASE1L1 (ENSCLAG00000003494) #32	ENSCLAG00000003108 ##33	FLNA (ENSCLAG00000003106) #34	EMD (ENSCLAG00000002874) #35	TKTL1 (ENSCLAG00000001825) #36	ENSCLAG00000001715
Guinea pig	MODERN SPECIES	148	SPRY3 (ENSCPOG00000038854)	TMLHE (ENSCPOG00000005415)	CLIC2 (ENSCPOG00000007641)	RAB39B (ENSCPOG00000039524)	VBP1 (ENSCPOG00000013652)	ENSCPOG00000001882	CMC4 (ENSCPOG00000033896)	MTCP1 (ENSCPOG00000034922) #7	FUNDC2 (ENSCPOG00000015635) #8	F8 (ENSCPOG00000007773) #9	MPP1 (ENSCPOG00000008826) #13	DKC1 (ENSCPOG00000008825) #14	GAB3 (ENSCPOG00000002987) #15	ENSCPOG00000026136 #19	IKBKG (ENSCPOG00000021550) #21	G6PD (ENSCPOG00000021395) #22	FAM3A (ENSCPOG00000019367) #23	SLC10A3 (ENSCPOG00000007289) #24	UBL4A (ENSCPOG00000040690) #25	ENSCPOG00000034445 #26	PLXNA3 (ENSCPOG00000011493) #27	ENSCPOG00000005974 ##28	GDI1 (ENSCPOG00000032738) #29	ATP6AP1 (ENSCPOG00000005972) #30	TAFAZZIN (ENSCPOG00000020454) #31	DNASE1L1 (ENSCPOG00000005648) #32	ENSCPOG00000002355 #33	EMD (ENSCPOG00000002642) #35	FLNA (ENSCPOG00000002672) #34	TKTL1 (ENSCPOG00000011767) #36	ENSCPOG00000021789 #37
Naked mole-rat female	MODERN SPECIES	31															ENSHGLG00000032904 #21	G6PD (ENSHGLG00000001124) #22	FAM3A (ENSHGLG00000005912) #23	ENSHGLG00000003702 #25	LAGE3 (ENSHGLG00000039993) #26	PLXNA3 (ENSHGLG00000002186) #27	ENSHGLG00000039319 ##28	GDI1 (ENSHGLG00000003275) #29	ATP6AP1 (ENSHGLG00000002607) #30	ENSHGLG00000009984 #31	DNASE1L1 (ENSHGLG00000013868) #32	RPL10 (ENSHGLG00000002349) ##33	TKTL1 (ENSHGLG00000042978) #36	ENSHGLG00000043472 #37	MECP2 (ENSHGLG00000000899)	IRAK1 (ENSHGLG00000002116)	HCFC1 (ENSHGLG00000001143)