Mus_A	ANCESTRAL SPECIES	6	ENSGT00990000203541.a.a.a.b #8	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37	ENSGT01030000234595.B.c.b
Ryukyu mouse	MODERN SPECIES	14	Kmt2e (MGP_CAROLIEiJ_G0026997) #7	Lhfpl3 (MGP_CAROLIEiJ_G0026996) #8	Reln (MGP_CAROLIEiJ_G0026995) #9	Slc26a5 (MGP_CAROLIEiJ_G0026994) #10	Psmc2 (MGP_CAROLIEiJ_G0026993) #11	Dnajc2 (MGP_CAROLIEiJ_G0026992) #12	Pmpcb (MGP_CAROLIEiJ_G0026991) #13	Napepld (MGP_CAROLIEiJ_G0026990) #14	Armc10 (MGP_CAROLIEiJ_G0026989) #15	Lrrc17 (MGP_CAROLIEiJ_G0026988) #16	Fbxl13 (MGP_CAROLIEiJ_G0026987) #17	Fam185a (MGP_CAROLIEiJ_G0026986) #18	Fgl2 (MGP_CAROLIEiJ_G0026985) #19	Ccdc146 (MGP_CAROLIEiJ_G0026984) #20	Gsap (MGP_CAROLIEiJ_G0026983) #21	Ptpn12 (MGP_CAROLIEiJ_G0026982) #22	Rsbn1l (MGP_CAROLIEiJ_G0026981) #23	Tmem60 (MGP_CAROLIEiJ_G0026980) #24	Phtf2 (MGP_CAROLIEiJ_G0026979) #25	Magi2 (MGP_CAROLIEiJ_G0026978) #26	Gnai1 (MGP_CAROLIEiJ_G0026977) #27	Gnat3 (MGP_CAROLIEiJ_G0026976) #28	Cd36 (MGP_CAROLIEiJ_G0026975) #29	Sema3c (MGP_CAROLIEiJ_G0026974) #30	Hgf (MGP_CAROLIEiJ_G0026973) #31	Cacna2d1 (MGP_CAROLIEiJ_G0026972) #32	MGP_CAROLIEiJ_G0026971 #33	Pclo (MGP_CAROLIEiJ_G0026970) #34	Sema3e (MGP_CAROLIEiJ_G0026969) #35	Sema3a (MGP_CAROLIEiJ_G0026968) #36	Sema3d (MGP_CAROLIEiJ_G0026967) #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546.g #15	ENSGT00940000159546.h #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37	ENSGT01030000234595.B.c.b
Mouse	MODERN SPECIES	14	Lhfpl3 (ENSMUSG00000106379) #8	Orc5 (ENSMUSG00000029012)	Reln (ENSMUSG00000042453) #9	Slc26a5 (ENSMUSG00000029015) #10	Psmc2 (ENSMUSG00000028932) #11	Dnajc2 (ENSMUSG00000029014) #12	Pmpcb (ENSMUSG00000029017) #13	Napepld (ENSMUSG00000044968) #14	Armc10 (ENSMUSG00000038525) #15	Lrrc17 (ENSMUSG00000039883) #16	Fbxl13 (ENSMUSG00000048520) #17	Fam185a (ENSMUSG00000047221) #18	Fgl2 (ENSMUSG00000039899) #19	Ccdc146 (ENSMUSG00000064280) #20	Gsap (ENSMUSG00000039934) #21	Ptpn12 (ENSMUSG00000028771) #22	Rsbn1l (ENSMUSG00000039968) #23	Tmem60 (ENSMUSG00000045435) #24	Phtf2 (ENSMUSG00000039987) #25	Magi2 (ENSMUSG00000040003) #26	Gnai1 (ENSMUSG00000057614) #27	Gnat3 (ENSMUSG00000028777) #28	Cd36 (ENSMUSG00000002944) #29	Sema3c (ENSMUSG00000028780) #30	Speer4f1 (ENSMUSG00000058643) ##33	Speer4f2 (ENSMUSG00000091827) ##33	Cdhr17 (ENSMUSG00000109903)	Hgf (ENSMUSG00000028864) #31	Cacna2d1 (ENSMUSG00000040118) #32	Speer4c (ENSMUSG00000073208) #33	4930572O03Rik (ENSMUSG00000069720) #33
Mus_C	ANCESTRAL SPECIES	4	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546.g #15	ENSGT00940000160224 #17	ENSGT00940000159546.h.a #15	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37	ENSGT01030000234595.B.c.b
spretus	MODERN SPECIES	14	Lhfpl3 (MGP_SPRETEiJ_G0027992) #8	Orc5 (MGP_SPRETEiJ_G0027991)	Reln (MGP_SPRETEiJ_G0027990) #9	Slc26a5 (MGP_SPRETEiJ_G0027989) #10	MGP_SPRETEiJ_G0027988 #11	Dnajc2 (MGP_SPRETEiJ_G0027987) #12	Pmpcb (MGP_SPRETEiJ_G0027986) #13	Napepld (MGP_SPRETEiJ_G0027985) #14	MGP_SPRETEiJ_G0027984 #15	Lrrc17 (MGP_SPRETEiJ_G0027983) #16	Fbxl13 (MGP_SPRETEiJ_G0027982) #17	Fam185a (MGP_SPRETEiJ_G0027981) #18	Fgl2 (MGP_SPRETEiJ_G0027980) #19	Ccdc146 (MGP_SPRETEiJ_G0027979) #20	Gsap (MGP_SPRETEiJ_G0027978) #21	Ptpn12 (MGP_SPRETEiJ_G0027977) #22	Rsbn1l (MGP_SPRETEiJ_G0027976) #23	Tmem60 (MGP_SPRETEiJ_G0027975) #24	Phtf2 (MGP_SPRETEiJ_G0027974) #25	MGP_SPRETEiJ_G0027973 #26	MGP_SPRETEiJ_G0027972	Gnai1 (MGP_SPRETEiJ_G0027971) #27	Gnat3 (MGP_SPRETEiJ_G0027970) #28	Cd36 (MGP_SPRETEiJ_G0027969) #29	Sema3c (MGP_SPRETEiJ_G0027968) #30	Hgf (MGP_SPRETEiJ_G0027967) #31	Cacna2d1 (MGP_SPRETEiJ_G0027966) #32	Pclo (MGP_SPRETEiJ_G0027965) #34	Sema3e (MGP_SPRETEiJ_G0027964) #35	MGP_SPRETEiJ_G0027963 #36	Sema3d (MGP_SPRETEiJ_G0027962) #37
Steppe mouse	MODERN SPECIES	62																Ptpn12 (ENSMSIG00000026858) #22	Rsbn1l (ENSMSIG00000026899) #23	Tmem60 (ENSMSIG00000026914) #24	Phtf2 (ENSMSIG00000026916) #25	Magi2 (ENSMSIG00000026966) #26	Gnai1 (ENSMSIG00000000169) #27	ENSMSIG00000000224	Gnat3 (ENSMSIG00000000242) #28	ENSMSIG00000000289 #29