Euarchontoglires_A	ANCESTRAL SPECIES	17	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000175032	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00940000165989	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Glires	ANCESTRAL SPECIES	18	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000175032	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00940000165989	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Rodentia	ANCESTRAL SPECIES	12	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000175032	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00940000165989	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00940000165989	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00940000165989	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Muroidea	ANCESTRAL SPECIES	8	ENSGT00990000203541.a.a.a.b #8	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00990000203541.a.a.a.b #8	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Murinae	ANCESTRAL SPECIES	31	ENSGT00990000203541.a.a.a.b #8	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Mus	ANCESTRAL SPECIES	24	ENSGT00990000203541.a.a.a.b #8	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37	ENSGT01030000234595.B.c.b
Mus_A	ANCESTRAL SPECIES	6	ENSGT00990000203541.a.a.a.b #8	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37	ENSGT01030000234595.B.c.b
Ryukyu mouse	MODERN SPECIES	14	Kmt2e (MGP_CAROLIEiJ_G0026997) #7	Lhfpl3 (MGP_CAROLIEiJ_G0026996) #8	Reln (MGP_CAROLIEiJ_G0026995) #9	Slc26a5 (MGP_CAROLIEiJ_G0026994) #10	Psmc2 (MGP_CAROLIEiJ_G0026993) #11	Dnajc2 (MGP_CAROLIEiJ_G0026992) #12	Pmpcb (MGP_CAROLIEiJ_G0026991) #13	Napepld (MGP_CAROLIEiJ_G0026990) #14	Armc10 (MGP_CAROLIEiJ_G0026989) #15	Lrrc17 (MGP_CAROLIEiJ_G0026988) #16	Fbxl13 (MGP_CAROLIEiJ_G0026987) #17	Fam185a (MGP_CAROLIEiJ_G0026986) #18	Fgl2 (MGP_CAROLIEiJ_G0026985) #19	Ccdc146 (MGP_CAROLIEiJ_G0026984) #20	Gsap (MGP_CAROLIEiJ_G0026983) #21	Ptpn12 (MGP_CAROLIEiJ_G0026982) #22	Rsbn1l (MGP_CAROLIEiJ_G0026981) #23	Tmem60 (MGP_CAROLIEiJ_G0026980) #24	Phtf2 (MGP_CAROLIEiJ_G0026979) #25	Magi2 (MGP_CAROLIEiJ_G0026978) #26	Gnai1 (MGP_CAROLIEiJ_G0026977) #27	Gnat3 (MGP_CAROLIEiJ_G0026976) #28	Cd36 (MGP_CAROLIEiJ_G0026975) #29	Sema3c (MGP_CAROLIEiJ_G0026974) #30	Hgf (MGP_CAROLIEiJ_G0026973) #31	Cacna2d1 (MGP_CAROLIEiJ_G0026972) #32	MGP_CAROLIEiJ_G0026971 #33	Pclo (MGP_CAROLIEiJ_G0026970) #34	Sema3e (MGP_CAROLIEiJ_G0026969) #35	Sema3a (MGP_CAROLIEiJ_G0026968) #36	Sema3d (MGP_CAROLIEiJ_G0026967) #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546.g #15	ENSGT00940000159546.h #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37	ENSGT01030000234595.B.c.b
Mouse	MODERN SPECIES	14	Lhfpl3 (ENSMUSG00000106379) #8	Orc5 (ENSMUSG00000029012)	Reln (ENSMUSG00000042453) #9	Slc26a5 (ENSMUSG00000029015) #10	Psmc2 (ENSMUSG00000028932) #11	Dnajc2 (ENSMUSG00000029014) #12	Pmpcb (ENSMUSG00000029017) #13	Napepld (ENSMUSG00000044968) #14	Armc10 (ENSMUSG00000038525) #15	Lrrc17 (ENSMUSG00000039883) #16	Fbxl13 (ENSMUSG00000048520) #17	Fam185a (ENSMUSG00000047221) #18	Fgl2 (ENSMUSG00000039899) #19	Ccdc146 (ENSMUSG00000064280) #20	Gsap (ENSMUSG00000039934) #21	Ptpn12 (ENSMUSG00000028771) #22	Rsbn1l (ENSMUSG00000039968) #23	Tmem60 (ENSMUSG00000045435) #24	Phtf2 (ENSMUSG00000039987) #25	Magi2 (ENSMUSG00000040003) #26	Gnai1 (ENSMUSG00000057614) #27	Gnat3 (ENSMUSG00000028777) #28	Cd36 (ENSMUSG00000002944) #29	Sema3c (ENSMUSG00000028780) #30	Speer4f1 (ENSMUSG00000058643) ##33	Speer4f2 (ENSMUSG00000091827) ##33	Cdhr17 (ENSMUSG00000109903)	Hgf (ENSMUSG00000028864) #31	Cacna2d1 (ENSMUSG00000040118) #32	Speer4c (ENSMUSG00000073208) #33	4930572O03Rik (ENSMUSG00000069720) #33
Mus_C	ANCESTRAL SPECIES	4	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546.g #15	ENSGT00940000160224 #17	ENSGT00940000159546.h.a #15	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37	ENSGT01030000234595.B.c.b
spretus	MODERN SPECIES	14	Lhfpl3 (MGP_SPRETEiJ_G0027992) #8	Orc5 (MGP_SPRETEiJ_G0027991)	Reln (MGP_SPRETEiJ_G0027990) #9	Slc26a5 (MGP_SPRETEiJ_G0027989) #10	MGP_SPRETEiJ_G0027988 #11	Dnajc2 (MGP_SPRETEiJ_G0027987) #12	Pmpcb (MGP_SPRETEiJ_G0027986) #13	Napepld (MGP_SPRETEiJ_G0027985) #14	MGP_SPRETEiJ_G0027984 #15	Lrrc17 (MGP_SPRETEiJ_G0027983) #16	Fbxl13 (MGP_SPRETEiJ_G0027982) #17	Fam185a (MGP_SPRETEiJ_G0027981) #18	Fgl2 (MGP_SPRETEiJ_G0027980) #19	Ccdc146 (MGP_SPRETEiJ_G0027979) #20	Gsap (MGP_SPRETEiJ_G0027978) #21	Ptpn12 (MGP_SPRETEiJ_G0027977) #22	Rsbn1l (MGP_SPRETEiJ_G0027976) #23	Tmem60 (MGP_SPRETEiJ_G0027975) #24	Phtf2 (MGP_SPRETEiJ_G0027974) #25	MGP_SPRETEiJ_G0027973 #26	MGP_SPRETEiJ_G0027972	Gnai1 (MGP_SPRETEiJ_G0027971) #27	Gnat3 (MGP_SPRETEiJ_G0027970) #28	Cd36 (MGP_SPRETEiJ_G0027969) #29	Sema3c (MGP_SPRETEiJ_G0027968) #30	Hgf (MGP_SPRETEiJ_G0027967) #31	Cacna2d1 (MGP_SPRETEiJ_G0027966) #32	Pclo (MGP_SPRETEiJ_G0027965) #34	Sema3e (MGP_SPRETEiJ_G0027964) #35	MGP_SPRETEiJ_G0027963 #36	Sema3d (MGP_SPRETEiJ_G0027962) #37
Steppe mouse	MODERN SPECIES	62																Ptpn12 (ENSMSIG00000026858) #22	Rsbn1l (ENSMSIG00000026899) #23	Tmem60 (ENSMSIG00000026914) #24	Phtf2 (ENSMSIG00000026916) #25	Magi2 (ENSMSIG00000026966) #26	Gnai1 (ENSMSIG00000000169) #27	ENSMSIG00000000224	Gnat3 (ENSMSIG00000000242) #28	ENSMSIG00000000289 #29
Shrew mouse	MODERN SPECIES	11	Lhfpl3 (MGP_PahariEiJ_G0021768) #8	Orc5 (MGP_PahariEiJ_G0021767)	Reln (MGP_PahariEiJ_G0021766) #9	Slc26a5 (MGP_PahariEiJ_G0021765) #10	Psmc2 (MGP_PahariEiJ_G0021764) #11	Dnajc2 (MGP_PahariEiJ_G0021763) #12	Pmpcb (MGP_PahariEiJ_G0021762) #13	Napepld (MGP_PahariEiJ_G0021761) #14	Armc10 (MGP_PahariEiJ_G0021760) #15	Lrrc17 (MGP_PahariEiJ_G0021759) #16	Fbxl13 (MGP_PahariEiJ_G0021758) #17	Fam185a (MGP_PahariEiJ_G0021757) #18	Fgl2 (MGP_PahariEiJ_G0021756) #19	Ccdc146 (MGP_PahariEiJ_G0021755) #20	Gsap (MGP_PahariEiJ_G0021754) #21	Ptpn12 (MGP_PahariEiJ_G0021753) #22	Rsbn1l (MGP_PahariEiJ_G0021752) #23	Tmem60 (MGP_PahariEiJ_G0021751) #24	Phtf2 (MGP_PahariEiJ_G0021750) #25	MGP_PahariEiJ_G0021749 #26	Gnai1 (MGP_PahariEiJ_G0021748) #27	Gnat3 (MGP_PahariEiJ_G0021747) #28	Cd36 (MGP_PahariEiJ_G0021746) #29	Sema3c (MGP_PahariEiJ_G0021745) #30	Hgf (MGP_PahariEiJ_G0021744) #31	Cacna2d1 (MGP_PahariEiJ_G0021743) #32	Pclo (MGP_PahariEiJ_G0021742) #34	Sema3e (MGP_PahariEiJ_G0021741) #35	Sema3a (MGP_PahariEiJ_G0021740) #36	Sema3d (MGP_PahariEiJ_G0021739) #37	Grm3 (MGP_PahariEiJ_G0021738)
Rat	MODERN SPECIES	14	Reln (ENSRNOG00000021441) #9	Cryzl1-ps1 (ENSRNOG00000066436)	Slc26a5 (ENSRNOG00000011616) #10	Psmc2 (ENSRNOG00000012026) #11	Dnajc2 (ENSRNOG00000012392) #12	Pmpcb (ENSRNOG00000012693) #13	ENSRNOG00000063798	Napepld (ENSRNOG00000011363) #14	Armc10 (ENSRNOG00000012785) #15	Fbxl13 (ENSRNOG00000043035) #17	Lrrc17 (ENSRNOG00000012817) #16	Fam185a (ENSRNOG00000048371) #18	Ccdc146 (ENSRNOG00000012932) #20	Fgl2 (ENSRNOG00000012881) #19	Gsap (ENSRNOG00000028801) #21	Ptpn12 (ENSRNOG00000013135) #22	Rsbn1l (ENSRNOG00000013431) #23	Tmem60 (ENSRNOG00000013510) #24	Phtf2 (ENSRNOG00000013517) #25	Magi2 (ENSRNOG00000013962) #26	Gnai1 (ENSRNOG00000057096) #27	Gnat3 (ENSRNOG00000005268) #28	RGD1565355 (ENSRNOG00000005906) #29	Sema3c (ENSRNOG00000006526) #30	LOC102551166 (ENSRNOG00000070617)	Hgf (ENSRNOG00000007027) #31	Cacna2d1 (ENSRNOG00000033531) #32	Pclo (ENSRNOG00000005726) #34	ENSRNOG00000063451	Sema3e (ENSRNOG00000006631) #35	ENSRNOG00000068450
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00990000203541.a.a.a.b #8	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00530000063534.a #20	ENSGT00940000157946 #19	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Cricetidae_B	ANCESTRAL SPECIES	56	ENSGT00990000203541.a.a.a.b #8	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37	ENSGT01030000234595.B.c.b
Northern American deer mouse	MODERN SPECIES	16	Orc5 (ENSPEMG00000021074)	ENSPEMG00000015868	Reln (ENSPEMG00000021521) #9	Slc26a5 (ENSPEMG00000024244) #10	Psmc2 (ENSPEMG00000022409) #11	Dnajc2 (ENSPEMG00000022818) #12	Pmpcb (ENSPEMG00000023365) #13	Napepld (ENSPEMG00000022057) #14	Armc10 (ENSPEMG00000022493) #15	Fbxl13 (ENSPEMG00000019996) #17	Lrrc17 (ENSPEMG00000019459) #16	Fam185a (ENSPEMG00000019617) #18	Ccdc146 (ENSPEMG00000000507) #20	Fgl2 (ENSPEMG00000026988) #19	Gsap (ENSPEMG00000019465) #21	Ptpn12 (ENSPEMG00000019327) #22	Rsbn1l (ENSPEMG00000003144) #23	ENSPEMG00000029660 #24	Phtf2 (ENSPEMG00000019957) #25	Magi2 (ENSPEMG00000019437) #26	ENSPEMG00000027276	Sema3d (ENSPEMG00000001820) #37	Sema3a (ENSPEMG00000000566) #36	Sema3e (ENSPEMG00000020006) #35	Pclo (ENSPEMG00000008368) #34	ENSPEMG00000025835	Cacna2d1 (ENSPEMG00000019975) #32	Hgf (ENSPEMG00000007344) #31	Sema3c (ENSPEMG00000019672) #30	Cd36 (ENSPEMG00000019565) #29	Gnat3 (ENSPEMG00000019440) #28
Prairie vole	MODERN SPECIES	11	Lhfpl3 (ENSMOCG00000013886) #8	Orc5 (ENSMOCG00000012428)	Reln (ENSMOCG00000013520) #9	Slc26a5 (ENSMOCG00000000149) #10	ENSMOCG00000000350 #11	Dnajc2 (ENSMOCG00000021529) #12	ENSMOCG00000007981 #13	Napepld (ENSMOCG00000012625) #14	Armc10 (ENSMOCG00000015527) #15	Lrrc17 (ENSMOCG00000016309) #16	Fbxl13 (ENSMOCG00000012831) #17	Fam185a (ENSMOCG00000015031) #18	Fgl2 (ENSMOCG00000015949) #19	Ccdc146 (ENSMOCG00000009882) #20	Gsap (ENSMOCG00000010633) #21	Ptpn12 (ENSMOCG00000014135) #22	Rsbn1l (ENSMOCG00000010838) #23	Tmem60 (ENSMOCG00000021071) #24	Phtf2 (ENSMOCG00000001547) #25	Magi2 (ENSMOCG00000014388) #26	Gnai1 (ENSMOCG00000019836) #27	Gnat3 (ENSMOCG00000017375) #28	Cd36 (ENSMOCG00000010013) #29	Sema3c (ENSMOCG00000018320) #30	ENSMOCG00000018415 #31	Cacna2d1 (ENSMOCG00000016976) #32	Pclo (ENSMOCG00000015849) #34	Sema3e (ENSMOCG00000018698) #35	Sema3a (ENSMOCG00000021637) #36	Sema3d (ENSMOCG00000016090) #37	ENSMOCG00000003330
Cricetinae	ANCESTRAL SPECIES	51	ENSGT00990000203541.a.a.a.b #8	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00530000063534.a #20	ENSGT00940000157946 #19	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158203 #36	ENSGT00940000156681 #37	ENSGT01030000234595.B.c.b
Chinese hamster chok1gshd	MODERN SPECIES	83	Reln (ENSCGRG00001013185) #9	Slc26a5 (ENSCGRG00001017052) #10	Psmc2 (ENSCGRG00001020953) #11	Dnajc2 (ENSCGRG00001003350) #12	Pmpcb (ENSCGRG00001013879) #13	Napepld (ENSCGRG00001018986) #14	Armc10 (ENSCGRG00001023015) #15	Fbxl13 (ENSCGRG00001023813) #17	ENSCGRG00001015421	Lrrc17 (ENSCGRG00001017366) #16	Fam185a (ENSCGRG00001009903) #18	Ccdc146 (ENSCGRG00001021726) #20	Fgl2 (ENSCGRG00001000342) #19	Gsap (ENSCGRG00001016392) #21	ENSCGRG00001009609	Ptpn12 (ENSCGRG00001018953) #22	Rsbn1l (ENSCGRG00001003826) #23	Tmem60 (ENSCGRG00001011250) #24	Phtf2 (ENSCGRG00001024428) #25	Magi2 (ENSCGRG00001009718) #26	ENSCGRG00001015694	ENSCGRG00001003393	ENSCGRG00001010454	Gnai1 (ENSCGRG00001015780) #27	Gnat3 (ENSCGRG00001022163) #28	Cd36 (ENSCGRG00001010767) #29	Sema3c (ENSCGRG00001016881) #30	Cdhr17 (ENSCGRG00001009502)	Hgf (ENSCGRG00001021509) #31	Cacna2d1 (ENSCGRG00001005535) #32	Pclo (ENSCGRG00001007284) #34
Golden Hamster	MODERN SPECIES	722	Lhfpl3 (ENSMAUG00000011235) #8	Orc5 (ENSMAUG00000011061)	Reln (ENSMAUG00000018537) #9	Slc26a5 (ENSMAUG00000000055) #10	Psmc2 (ENSMAUG00000008073) #11	Dnajc2 (ENSMAUG00000003928) #12	ENSMAUG00000006601 #13	Napepld (ENSMAUG00000004368) #14	Armc10 (ENSMAUG00000007717) #15	Fbxl13 (ENSMAUG00000004286) #17	Lrrc17 (ENSMAUG00000004793) #16	Fam185a (ENSMAUG00000006573) #18	Ccdc146 (ENSMAUG00000008882) #20	Fgl2 (ENSMAUG00000017628) #19	Gsap (ENSMAUG00000001104) #21	Ptpn12 (ENSMAUG00000000239) #22	Rsbn1l (ENSMAUG00000016941) #23	Tmem60 (ENSMAUG00000000985) #24	Phtf2 (ENSMAUG00000014092) #25	Magi2 (ENSMAUG00000013050) #26	Gnai1 (ENSMAUG00000000903) #27	Gnat3 (ENSMAUG00000007965) #28	Cd36 (ENSMAUG00000000590) #29	Sema3c (ENSMAUG00000013450) #30	ENSMAUG00000003314	Cdhr17 (ENSMAUG00000016818)	Hgf (ENSMAUG00000007722) #31	Cacna2d1 (ENSMAUG00000003964) #32	ENSMAUG00000011469 #32
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	723	ENSNGAG00000024028	Reln (ENSNGAG00000016707) #9	Slc26a5 (ENSNGAG00000015273) #10	ENSNGAG00000022781 #11	ENSNGAG00000024237 #12	ENSNGAG00000003916 #13	Napepld (ENSNGAG00000010505) #14	Armc10 (ENSNGAG00000023657) #15	Fbxl13 (ENSNGAG00000020183) #17	Lrrc17 (ENSNGAG00000004675) #16	Fam185a (ENSNGAG00000023332) #18	Ccdc146 (ENSNGAG00000016089) #20	Fgl2 (ENSNGAG00000019035) #19	Gsap (ENSNGAG00000008171) #21	ENSNGAG00000007224	ENSNGAG00000009649 #22	Rsbn1l (ENSNGAG00000016143) #23	Tmem60 (ENSNGAG00000023996) #24	Phtf2 (ENSNGAG00000019574) #25	Magi2 (ENSNGAG00000011969) #26	ENSNGAG00000023584	Gnai1 (ENSNGAG00000012437) #27
Upper Galilee mountains blind mole rat	MODERN SPECIES	1068	2700049A03Rik (ENSNGAG00000018580)	Timm9 (ENSNGAG00000012518)	Arid4a (ENSNGAG00000015701)	ENSNGAG00000012537	Actr10 (ENSNGAG00000020352)	ENSNGAG00000019693	Armh4 (ENSNGAG00000008903)	Slc35f4 (ENSNGAG00000017272)	ccdc198 (ENSNGAG00000016223)	Naa30 (ENSNGAG00000007396)	Ap5m1 (ENSNGAG00000010113)	Exoc5 (ENSNGAG00000000258)	Otx2 (ENSNGAG00000015521)	Tmem260 (ENSNGAG00000001126)	Peli2 (ENSNGAG00000011043)	ENSNGAG00000003555 #22	Ktn1 (ENSNGAG00000014640)	Tbpl2 (ENSNGAG00000002908)	Atg14 (ENSNGAG00000021004)	Fbxo34 (ENSNGAG00000016745)	ENSNGAG00000019620	Lgals3 (ENSNGAG00000020150)	ENSNGAG00000002812	Socs4 (ENSNGAG00000016338)	Wdhd1 (ENSNGAG00000019249)	Gch1 (ENSNGAG00000001258)	Samd4 (ENSNGAG00000014981)	Cgrrf1 (ENSNGAG00000012236)	Gmfb (ENSNGAG00000015674)	ENSNGAG00000004898	Cdkn3 (ENSNGAG00000000269)
Lesser Egyptian jerboa	MODERN SPECIES	49	Slc26a5 (ENSJJAG00000024113) #10	ENSJJAG00000007388 #11	ENSJJAG00000012128 #12	ENSJJAG00000008828 #13	Napepld (ENSJJAG00000010036) #14	Armc10 (ENSJJAG00000023439) #15	Fbxl13 (ENSJJAG00000024216) #17	ENSJJAG00000014726	Lrrc17 (ENSJJAG00000015076) #16	Fam185a (ENSJJAG00000018185) #18	ENSJJAG00000001386	Fgl2 (ENSJJAG00000010663) #19	ENSJJAG00000021745 #20	ENSJJAG00000009895 #21	ENSJJAG00000004035	Ptpn12 (ENSJJAG00000023092) #22	Rsbn1l (ENSJJAG00000017941) #23	ENSJJAG00000012291 #24	Phtf2 (ENSJJAG00000007015) #25	Bbs9 (ENSJJAG00000003244)	Bmper (ENSJJAG00000009850)	ENSJJAG00000021154	ENSJJAG00000017362	Smg1 (ENSJJAG00000018008)	Mrps24 (ENSJJAG00000011276)	ENSJJAG00000016812	ENSJJAG00000013146	Dbnl (ENSJJAG00000019824)	Pgam2 (ENSJJAG00000006198)	Polm (ENSJJAG00000005659)	Aebp1 (ENSJJAG00000006815)
Kangaroo rat	MODERN SPECIES	524			Armc10 (ENSDORG00000011654) #15	Napepld (ENSDORG00000029712) #14	ENSDORG00000026182 #13	Dnajc2 (ENSDORG00000003632) #12	Psmc2 (ENSDORG00000000212) #11	Slc26a5 (ENSDORG00000002471) #10	Lrrc17 (ENSDORG00000029679) #16	ENSDORG00000011651 #17	Fam185a (ENSDORG00000023351) #18	Fgl2 (ENSDORG00000029967) #19	ENSDORG00000029582	ENSDORG00000024224 #20	ENSDORG00000025432 #21	ENSDORG00000013855 #22	Rsbn1l (ENSDORG00000014707) #23	Tmem60 (ENSDORG00000014711) #24	Phtf2 (ENSDORG00000006664) #25	Magi2 (ENSDORG00000003291) #26
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000175032	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00940000165989	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00390000009380	ENSGT00580000081623.n #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00940000165989	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Marmotini	ANCESTRAL SPECIES	35	ENSGT00390000009380	ENSGT00580000081623.n #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000016972.a.a.b.b.b.a.a	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00530000063534.a #20	ENSGT00940000157946 #19	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Marmotini_b	ANCESTRAL SPECIES	65	ENSGT00580000081623.n #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000016972.a.a.b.b.b.a.a	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00940000165989	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00940000165534	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36
Arctic ground squirrel	MODERN SPECIES	34	RELN (ENSUPAG00010002310) #9	SLC26A5 (ENSUPAG00010003267) #10	PSMC2 (ENSUPAG00010003329) #11	DNAJC2 (ENSUPAG00010003345) #12	PMPCB (ENSUPAG00010003374) #13	ENSUPAG00010003420	NAPEPLD (ENSUPAG00010003433) #14	ARMC10 (ENSUPAG00010003440) #15	FBXL13 (ENSUPAG00010003449) #17	LRRC17 (ENSUPAG00010003536) #16	FAM185A (ENSUPAG00010003542) #18	ENSUPAG00010003549	FGL2 (ENSUPAG00010003562) #19	GSAP (ENSUPAG00010003567) #21	ENSUPAG00010003676 #20	PTPN12 (ENSUPAG00010003700) #22	ENSUPAG00010003741	TMEM60 (ENSUPAG00010003761) #24	PHTF2 (ENSUPAG00010003774) #25	MAGI2 (ENSUPAG00010003838) #26	ENSUPAG00010004069	GNAI1 (ENSUPAG00010004076) #27	GNAT3 (ENSUPAG00010004094) #28	CD36 (ENSUPAG00010004109) #29	SEMA3C (ENSUPAG00010004275) #30	ENSUPAG00010004298	ENSUPAG00010004315	HGF (ENSUPAG00010004320) #31	CACNA2D1 (ENSUPAG00010004400) #32	PCLO (ENSUPAG00010007156) #34	SEMA3E (ENSUPAG00010007251) #35
Squirrel	MODERN SPECIES	79	ORC5 (ENSSTOG00000003838)	RELN (ENSSTOG00000011764) #9	SLC26A5 (ENSSTOG00000011743) #10	PSMC2 (ENSSTOG00000005211) #11	DNAJC2 (ENSSTOG00000005180) #12	PMPCB (ENSSTOG00000005143) #13	NAPEPLD (ENSSTOG00000014525) #14	ARMC10 (ENSSTOG00000014517) #15	FBXL13 (ENSSTOG00000031857) #17	LRRC17 (ENSSTOG00000014510) #16	FAM185A (ENSSTOG00000026689) #18	CCDC146 (ENSSTOG00000016335) #20	FGL2 (ENSSTOG00000007612) #19	GSAP (ENSSTOG00000016348) #21	ENSSTOG00000025652	PTPN12 (ENSSTOG00000022147) #22	RSBN1L (ENSSTOG00000015257) #23	ENSSTOG00000033001	PHTF2 (ENSSTOG00000015265) #25	MAGI2 (ENSSTOG00000001974) #26
Alpin marmot	MODERN SPECIES	22	ORC5 (ENSMMMG00000016934)	RELN (ENSMMMG00000016952) #9	SLC26A5 (ENSMMMG00000017069) #10	DNAJC2 (ENSMMMG00000017106) #12	PMPCB (ENSMMMG00000017148) #13	ENSMMMG00000017163	NAPEPLD (ENSMMMG00000017176) #14	ARMC10 (ENSMMMG00000017188) #15	FBXL13 (ENSMMMG00000017210) #17	LRRC17 (ENSMMMG00000017274) #16	FAM185A (ENSMMMG00000017282) #18	CCDC146 (ENSMMMG00000017292) #20	FGL2 (ENSMMMG00000017311) #19	GSAP (ENSMMMG00000017323) #21	ENSMMMG00000017594	PTPN12 (ENSMMMG00000017611) #22	RSBN1L (ENSMMMG00000017630) #23	TMEM60 (ENSMMMG00000017641) #24	PHTF2 (ENSMMMG00000017649) #25	MAGI2 (ENSMMMG00000017684) #26	ENSMMMG00000018142	GNAI1 (ENSMMMG00000018160) #27	ENSMMMG00000018232	GNAT3 (ENSMMMG00000000102) #28	CD36 (ENSMMMG00000000147) #29	SEMA3C (ENSMMMG00000000312) #30	ENSMMMG00000000362	ENSMMMG00000000406	HGF (ENSMMMG00000000425) #31	CACNA2D1 (ENSMMMG00000000572) #32	PCLO (ENSMMMG00000001266) #34
Eurasian red squirrel	MODERN SPECIES	17	DNAJC2 (ENSSVLG00005020576) #12	PMPCB (ENSSVLG00005020529) #13	NAPEPLD (ENSSVLG00005020401) #14	ARMC10 (ENSSVLG00005020307) #15	LRRC17 (ENSSVLG00005020200) #16	FBXL13 (ENSSVLG00005019714) #17	ENSSVLG00005019279	FAM185A (ENSSVLG00005019204) #18	FGL2 (ENSSVLG00005019131) #19	ENSSVLG00005019089	CCDC146 (ENSSVLG00005018902) #20	ENSSVLG00005018834	GSAP (ENSSVLG00005018527) #21	ENSSVLG00005018483	ENSSVLG00005018466	PTPN12 (ENSSVLG00005018354) #22	RSBN1L (ENSSVLG00005018306) #23	ENSSVLG00005018287 #24	ENSSVLG00005018073 #25	MAGI2 (ENSSVLG00005016871) #26	GNAI1 (ENSSVLG00005016705) #27	GNAT3 (ENSSVLG00005016616) #28	CD36 (ENSSVLG00005016162) #29	SEMA3C (ENSSVLG00005016076) #30	ENSSVLG00005016050	HGF (ENSSVLG00005015489) #31	CACNA2D1 (ENSSVLG00005015379) #32	PCLO (ENSSVLG00005014745) #34	SEMA3E (ENSSVLG00005014255) #35	ENSSVLG00005014203	ENSSVLG00005014163
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000175032	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00940000165989	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000005976	ENSHGLG00000007833	RELN (ENSHGLG00000005815) #9	SLC26A5 (ENSHGLG00000014816) #10	PSMC2 (ENSHGLG00000016199) #11	DNAJC2 (ENSHGLG00000015196) #12	PMPCB (ENSHGLG00000015307) #13	NAPEPLD (ENSHGLG00000014769) #14	ENSHGLG00000034358 #15	FBXL13 (ENSHGLG00000014934) #17	LRRC17 (ENSHGLG00000007872) #16	ENSHGLG00000014966 #18	ENSHGLG00000013766 #20	ENSHGLG00000044640 #19	GSAP (ENSHGLG00000034146) #21	ENSHGLG00000006021 #22	RSBN1L (ENSHGLG00000008532) #23	PHTF2 (ENSHGLG00000016369) #25	TMEM60 (ENSHGLG00000010918) #24	ENSHGLG00000003108 ##11	ENSHGLG00000038970 #26	ENSHGLG00000043492	ENSHGLG00000041214	ENSHGLG00000035610 #27	GNAT3 (ENSHGLG00000005477) #28	CD36 (ENSHGLG00000008538) #29	SEMA3C (ENSHGLG00000017349) #30	ENSHGLG00000033747	HGF (ENSHGLG00000013433) #31	ENSHGLG00000009396 #32	ENSHGLG00000046779 #32
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000037870	ENSHGLG00000018660	ENSHGLG00000035370	DEFB103B (ENSHGLG00000048217)	ENSHGLG00000043681	ENSHGLG00000050883	ENSHGLG00000000054	ENSHGLG00000046844	ENSHGLG00000042547	ENSHGLG00000034021	ENSHGLG00000044335	ENSHGLG00000032308	ENSHGLG00000000880	ENSHGLG00000002668	ENSHGLG00000040104	ENSHGLG00000002310 #22	ENSHGLG00000048261	ANGPT2 (ENSHGLG00000002482)	ENSHGLG00000048727	CSMD1 (ENSHGLG00000000508)	ENSHGLG00000049125	MYOM2 (ENSHGLG00000000341)	KBTBD11 (ENSHGLG00000035008)	ARHGEF10 (ENSHGLG00000003965)	ENSHGLG00000041229	ENSHGLG00000003492	ENSHGLG00000003073	ENSHGLG00000018999	ENSHGLG00000043011	ENSHGLG00000050365	DEFB136 (ENSHGLG00000018411)
Hystricomorpha_a	ANCESTRAL SPECIES	41	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000175032	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000160224 #17	ENSGT00940000156400 #16	ENSGT00390000016680 #18	ENSGT00940000165989	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Guinea pig	MODERN SPECIES	31	ORC5 (ENSCPOG00000034910)	RELN (ENSCPOG00000031702) #9	SLC26A5 (ENSCPOG00000008126) #10	PSMC2 (ENSCPOG00000027107) #11	DNAJC2 (ENSCPOG00000008112) #12	PMPCB (ENSCPOG00000008108) #13	NAPEPLD (ENSCPOG00000001384) #14	ARMC10 (ENSCPOG00000019936) #15	FBXL13 (ENSCPOG00000001377) #17	LRRC17 (ENSCPOG00000001382) #16	FAM185A (ENSCPOG00000006904) #18	ENSCPOG00000030851	FGL2 (ENSCPOG00000011949) #19	ENSCPOG00000005922 #20	ENSCPOG00000037788 #21	ENSCPOG00000005099 #22	RSBN1L (ENSCPOG00000024933) #23	TMEM60 (ENSCPOG00000024211) #24	PHTF2 (ENSCPOG00000003576) #25	MAGI2 (ENSCPOG00000015293) #26	GNAI1 (ENSCPOG00000039890) #27	GNAT3 (ENSCPOG00000024295) #28	CD36 (ENSCPOG00000000503) #29	SEMA3C (ENSCPOG00000013376) #30	ENSCPOG00000038430	HGF (ENSCPOG00000000550) #31	CACNA2D1 (ENSCPOG00000012138) #32	PCLO (ENSCPOG00000009376) #34	SEMA3E (ENSCPOG00000011802) #35	SEMA3A (ENSCPOG00000003490) #36	SEMA3D (ENSCPOG00000011580) #37
Hystricomorpha_b	ANCESTRAL SPECIES	39	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000175032	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000165989	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31	ENSGT00940000155209 #32	ENSGT00620000087961.a.b.a.a.a.a #34	ENSGT00940000158437 #35	ENSGT00940000158203 #36	ENSGT00940000156681 #37
Long-tailed chinchilla	MODERN SPECIES	117	LHFPL3 (ENSCLAG00000007790) #8	ORC5 (ENSCLAG00000008027)	RELN (ENSCLAG00000007814) #9	SLC26A5 (ENSCLAG00000006369) #10	PSMC2 (ENSCLAG00000005494) #11	DNAJC2 (ENSCLAG00000008434) #12	PMPCB (ENSCLAG00000007214) #13	NAPEPLD (ENSCLAG00000006757) #14	ARMC10 (ENSCLAG00000006484) #15	LRRC17 (ENSCLAG00000009736) #16	FBXL13 (ENSCLAG00000006381) #17	ENSCLAG00000005813 #18	FGL2 (ENSCLAG00000004828) #19	CCDC146 (ENSCLAG00000007712) #20	ENSCLAG00000011224 #21	PTPN12 (ENSCLAG00000009559) #22	RSBN1L (ENSCLAG00000007980) #23	TMEM60 (ENSCLAG00000006206) #24	PHTF2 (ENSCLAG00000005414) #25	MAGI2 (ENSCLAG00000007220) #26	GNAI1 (ENSCLAG00000013140) #27	GNAT3 (ENSCLAG00000016271) #28	CD36 (ENSCLAG00000009968) #29	SEMA3C (ENSCLAG00000004911) #30	HGF (ENSCLAG00000004376) #31	CACNA2D1 (ENSCLAG00000006166) #32	PCLO (ENSCLAG00000004728) #34	SEMA3E (ENSCLAG00000006430) #35	SEMA3A (ENSCLAG00000005329) #36	SEMA3D (ENSCLAG00000012274) #37	GRM3 (ENSCLAG00000009192)
Degu	DUPLICATION
Degu	MODERN SPECIES	103	KLHL38 (ENSODEG00000002853)	FBXO32 (ENSODEG00000002945)	NTAQ1 (ENSODEG00000002956)	ATAD2 (ENSODEG00000003054)	ZHX1 (ENSODEG00000003111)	C8orf76 (ENSODEG00000003145)	ENSODEG00000003175	ENSODEG00000003219	ENSODEG00000003283	DERL1 (ENSODEG00000003299)	ZHX2 (ENSODEG00000019025)	HAS2 (ENSODEG00000003318)	ENSODEG00000003330	CCDC115 (ENSODEG00000003345)	IMP4 (ENSODEG00000003380)	ENSODEG00000003427 #22	AMER3 (ENSODEG00000002521)	ENSODEG00000018847	ENSODEG00000002544	ENSODEG00000002566	ENSODEG00000002605	FAM168B (ENSODEG00000002635)	ENSODEG00000002643	ENSODEG00000002654
Degu	MODERN SPECIES	149	RELN (ENSODEG00000005973) #9	SLC26A5 (ENSODEG00000009035) #10	ENSODEG00000007135 #11	ENSODEG00000008033 #12	ENSODEG00000006442	ENSODEG00000006733 #13	NAPEPLD (ENSODEG00000007965) #14	ARMC10 (ENSODEG00000006645) #15	FBXL13 (ENSODEG00000006526) #17	LRRC17 (ENSODEG00000010033) #16	FAM185A (ENSODEG00000010542) #18	ENSODEG00000007238	FGL2 (ENSODEG00000009010) #19	ENSODEG00000006399 #20	GSAP (ENSODEG00000007231) #21	PTPN12 (ENSODEG00000007326) #22	RSBN1L (ENSODEG00000006196) #23	ENSODEG00000019377 #24	PHTF2 (ENSODEG00000007039) #25	MAGI2 (ENSODEG00000007551) #26	GNAI1 (ENSODEG00000008540) #27	GNAT3 (ENSODEG00000007421) #28	CD36 (ENSODEG00000007161) #29	SEMA3C (ENSODEG00000006685) #30	ENSODEG00000007412	HGF (ENSODEG00000008277) #31	CACNA2D1 (ENSODEG00000009374) #32	PCLO (ENSODEG00000007259) #34	ENSODEG00000007059	SEMA3E (ENSODEG00000007213) #35	ENSODEG00000008317
Lagomorpha	ANCESTRAL SPECIES	24	ENSGT00990000203541.a.a.a.b #8	ENSGT00390000009380	ENSGT00580000081623 #9	ENSGT01070000253775.a.d.a.b.a #10	ENSGT01020000230346.B #11	ENSGT00940000155441 #12	ENSGT00940000156608 #13	ENSGT00390000017990 #14	ENSGT00940000159546 #15	ENSGT00940000156400 #16	ENSGT00940000160224 #17	ENSGT00390000016680 #18	ENSGT00940000157946 #19	ENSGT00530000063534.a #20	ENSGT00390000012875 #21	ENSGT00940000156909 #22	ENSGT00390000001969.b #23	ENSGT00390000007283 #24	ENSGT00390000011648.a #25	ENSGT00940000155057 #26	ENSGT00940000153567.b.a.b #27	ENSGT00940000161422 #28	ENSGT00940000153372.A.f #29	ENSGT00940000159379 #30	ENSGT00940000163878	ENSGT00940000156019 #31
Rabbit	MODERN SPECIES	18	ENSOCUG00000009050 #9	ENSOCUG00000030067 #9	SLC26A5 (ENSOCUG00000010227) #10	PSMC2 (ENSOCUG00000010217) #11	DNAJC2 (ENSOCUG00000010208) #12	ENSOCUG00000010200 #13	NAPEPLD (ENSOCUG00000023463) #14	ARMC10 (ENSOCUG00000007315) #15	LRRC17 (ENSOCUG00000011161) #16	ENSOCUG00000034584	FBXL13 (ENSOCUG00000011149) #17	FAM185A (ENSOCUG00000005977) #18	FGL2 (ENSOCUG00000013675) #19	CCDC146 (ENSOCUG00000015899) #20	GSAP (ENSOCUG00000015936) #21	PTPN12 (ENSOCUG00000002159) #22	RSBN1L (ENSOCUG00000005195) #23	TMEM60 (ENSOCUG00000005199) #24	PHTF2 (ENSOCUG00000005203) #25	ENSOCUG00000037148	MAGI2 (ENSOCUG00000001407) #26	ENSOCUG00000037608	GNAI1 (ENSOCUG00000001020) #27	GNAT3 (ENSOCUG00000024754) #28	CD36 (ENSOCUG00000002492) #29	SEMA3C (ENSOCUG00000009070) #30	ENSOCUG00000032770	HGF (ENSOCUG00000001618) #31	ENSOCUG00000035594	ENSOCUG00000036457	ENSOCUG00000007763 #32
Pika	MODERN SPECIES	940																PTPN12 (ENSOPRG00000016121) #22	RSBN1L (ENSOPRG00000016139) #23	TMEM60 (ENSOPRG00000016154) #24
Tree shrew	MODERN SPECIES	1209																PTPN12 (ENSTBEG00000002073) #22