Euteleostomi	ANCESTRAL SPECIES	24	ENSGT00940000161055	ENSGT00940000153434	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000172876	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000171049	ENSGT00940000176108	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34
Sarcopterygii	ANCESTRAL SPECIES	32	ENSGT00940000161055	ENSGT00940000153434	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000172876	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000171049	ENSGT00940000176108	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00940000161055	ENSGT00940000153434	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000172876	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000171049	ENSGT00940000176108	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35
Amniota	ANCESTRAL SPECIES	4	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000171049	ENSGT00940000176108	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35
Mammalia	ANCESTRAL SPECIES	24	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Theria	ANCESTRAL SPECIES	30	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b
Eutheria	ANCESTRAL SPECIES	7	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b
Primates	ANCESTRAL SPECIES	9	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a.d #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT00950000183037.A.b
Bushbaby	MODERN SPECIES	121	ENSOGAG00000030912 #7	ENSOGAG00000027042 #8	ENSOGAG00000026418 #9	TLE1 (ENSOGAG00000012917) #10	ENSOGAG00000024643 #11	ENSOGAG00000027188 #12	TLE4 (ENSOGAG00000009689) #13	ENSOGAG00000009484 #14	ENSOGAG00000032944 #15	PSAT1 (ENSOGAG00000003045) #16	CEP78 (ENSOGAG00000003043) #17	ENSOGAG00000025336 #18	GNAQ (ENSOGAG00000009233) #19	ENSOGAG00000025570 #20	ENSOGAG00000034066 #21	GNA14 (ENSOGAG00000009228) #22	VPS13A (ENSOGAG00000009206) #23	FOXB2 (ENSOGAG00000031210) #24	ENSOGAG00000028224 #25	PRUNE2 (ENSOGAG00000029865) #26	GCNT1 (ENSOGAG00000002901) #27	RFK (ENSOGAG00000013120) #28	PCSK5 (ENSOGAG00000013106) #29	OSTF1 (ENSOGAG00000002603) #30	NMRK1 (ENSOGAG00000002602) #31	CARNMT1 (ENSOGAG00000002600) #32	C9orf40 (ENSOGAG00000029257) #33	TRPM6 (ENSOGAG00000008591) #34	RORB (ENSOGAG00000001523) #35	ENSOGAG00000009311 #36	ENSOGAG00000028240 #37
Lemuriformes	ANCESTRAL SPECIES	66	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a.d #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36
Lemuriformes_a	ANCESTRAL SPECIES	250													ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27
Coquerels sifaka	MODERN SPECIES	475											ENSPCOG00000023650	ENSPCOG00000014693	PSAT1 (ENSPCOG00000016182) #16	CEP78 (ENSPCOG00000009887) #17	GNAQ (ENSPCOG00000024722) #19	GNA14 (ENSPCOG00000024302) #22	VPS13A (ENSPCOG00000023693) #23	FOXB2 (ENSPCOG00000025595) #24	PRUNE2 (ENSPCOG00000026186) #26	RFK (ENSPCOG00000025134) #28	ENSPCOG00000016767	PCSK5 (ENSPCOG00000016483) #29
Greater bamboo lemur	MODERN SPECIES	411															GNAQ (ENSPSMG00000017767) #19	GNA14 (ENSPSMG00000017748) #22	VPS13A (ENSPSMG00000017501) #23	FOXB2 (ENSPSMG00000017149) #24	PRUNE2 (ENSPSMG00000017116) #26	GCNT1 (ENSPSMG00000017048) #27
Mouse lemur	MODERN SPECIES	1	SLC28A3 (ENSMICG00000009916)	RMI1 (ENSMICG00000031486)	HNRNPK (ENSMICG00000015780)	C9orf64 (ENSMICG00000015776)	KIF27 (ENSMICG00000026425)	GKAP1 (ENSMICG00000004713)	UBQLN1 (ENSMICG00000004708)	IDNK (ENSMICG00000004704)	FRMD3 (ENSMICG00000000303)	RASEF (ENSMICG00000011836)	TLE1 (ENSMICG00000012918) #10	TLE4 (ENSMICG00000010164) #13	PSAT1 (ENSMICG00000003010) #16	ENSMICG00000003003 #17	GNAQ (ENSMICG00000044048) #19	GNA14 (ENSMICG00000003970) #22	VPS13A (ENSMICG00000003937) #23	FOXB2 (ENSMICG00000032613) #24	PRUNE2 (ENSMICG00000042329) #26	ENSMICG00000035231 #27	ENSMICG00000047245	ENSMICG00000014909	FBP2 (ENSMICG00000001148)	PTPRD (ENSMICG00000006128)	ENSMICG00000031481	ENSMICG00000035188	DMAC1 (ENSMICG00000035725)	KDM4C (ENSMICG00000010464)	GLDC (ENSMICG00000000602)	UHRF2 (ENSMICG00000036338)	TPD52L3 (ENSMICG00000000600)
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b
Tarsier	MODERN SPECIES	3973												PSAT1 (ENSTSYG00000000093) #16	CEP78 (ENSTSYG00000014143) #17	GNAQ (ENSTSYG00000009194) #19	ENSTSYG00000028216	GNA14 (ENSTSYG00000000455) #22	ENSTSYG00000029340
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.a.a #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00510000047030.xb.a.c.b	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.b #16	ENSGT00390000013287 #17	ENSGT00950000182935.B.a.q.a.a	ENSGT00940000161347 #19	ENSGT00510000047030.xb.a.c.b	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Hominidae	ANCESTRAL SPECIES	10	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.b #16	ENSGT00390000013287 #17	ENSGT00950000182935.B.a.q.a.a	ENSGT00940000161347 #19	ENSGT00510000047030.xb.a.c.b	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b.fb ##9	ENSGT00950000183043.a.b.b.a.b.gb ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.b #16	ENSGT00390000013287 #17	ENSGT00950000182935.B.a.q.a.a	ENSGT00940000161347 #19	ENSGT00510000047030.xb.a.c.b	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Gorilla	MODERN SPECIES	22	GKAP1 (ENSGGOG00000005564)	UBQLN1 (ENSGGOG00000016254)	IDNK (ENSGGOG00000023865)	FRMD3 (ENSGGOG00000004546)	RASEF (ENSGGOG00000006651)	ENSGGOG00000043095	ENSGGOG00000022476 ##9	SPATA31D1 (ENSGGOG00000016183) ##9	ENSGGOG00000036417 ##9	TLE1 (ENSGGOG00000000751) #10	TLE4 (ENSGGOG00000000292) #13	PSAT1 (ENSGGOG00000015480) #16	CEP78 (ENSGGOG00000001126) #17	ENSGGOG00000007023	ENSGGOG00000037158	GNA14 (ENSGGOG00000013561) #22	VPS13A (ENSGGOG00000022591) #23	FOXB2 (ENSGGOG00000043358) #24	PRUNE2 (ENSGGOG00000003389) #26	RFK (ENSGGOG00000037112) #28	PCSK5 (ENSGGOG00000015095) #29	OSTF1 (ENSGGOG00000011920) #30	NMRK1 (ENSGGOG00000011911) #31	CARNMT1 (ENSGGOG00000012752) #32	TRPM6 (ENSGGOG00000011987) #34	RORB (ENSGGOG00000011970) #35	ANXA1 (ENSGGOG00000004678) #36	ALDH1A1 (ENSGGOG00000008563) #37	TMC1 (ENSGGOG00000011002)	ZFAND5 (ENSGGOG00000008957)	GDA (ENSGGOG00000008537)
Homo/Pan group	ANCESTRAL SPECIES	16	ENSGT00390000002374	ENSGT00940000157487.mb.b	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b.fb ##9	ENSGT00950000183043.a.b.b.a.b.gb ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.b #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00510000047030.xb.a.c.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Human	MODERN SPECIES	21	C9orf64 (ENSG00000165118)	KIF27 (ENSG00000165115)	GKAP1 (ENSG00000165113)	UBQLN1 (ENSG00000135018)	IDNK (ENSG00000148057)	FRMD3 (ENSG00000172159)	RASEF (ENSG00000165105)	SPATA31D1 (ENSG00000214929) ##9	SPATA31D3 (ENSG00000186788) ##9	SPATA31D4 (ENSG00000189357) ##9	TLE1 (ENSG00000196781) #10	TLE4 (ENSG00000106829) #13	PSAT1 (ENSG00000135069) #16	CEP78 (ENSG00000148019) #17	GNAQ (ENSG00000156052) #19	GNA14 (ENSG00000156049) #22	VPS13A (ENSG00000197969) #23	FOXB2 (ENSG00000204612) #24	PRUNE2 (ENSG00000106772) #26	GCNT1 (ENSG00000187210) #27	RFK (ENSG00000135002) #28	PCSK5 (ENSG00000099139) #29	OSTF1 (ENSG00000134996) #30	NMRK1 (ENSG00000106733) #31	CARNMT1 (ENSG00000156017) #32	C9orf40 (ENSG00000135045) #33	TRPM6 (ENSG00000119121) #34	RORB (ENSG00000198963) #35	ANXA1 (ENSG00000135046) #36	ALDH1A1 (ENSG00000165092) #37	TMC1 (ENSG00000165091)
Pan	ANCESTRAL SPECIES	36	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00550000074980.b	ENSGT00950000183043.a.b.b.a.a.a.a.a.a.c.b.b ##9	ENSGT00950000183043.a.b.b.a.b.fb ##9	ENSGT00950000183043.a.b.b.a.b.gb ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.b #16	ENSGT00390000013287 #17	ENSGT00950000182971.C.hb.b	ENSGT00950000182935.B.a.q.a.a	ENSGT00940000161347 #19	ENSGT00510000047030.xb.a.c.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Chimpanzee	MODERN SPECIES	22	UBQLN1 (ENSPTRG00000021055)	FRMD3 (ENSPTRG00000021053)	RASEF (ENSPTRG00000021052)	ENSPTRG00000047503	ENSPTRG00000047351	ENSPTRG00000050795 ##9	ENSPTRG00000043940 ##9	TLE1 (ENSPTRG00000021048) #10	TLE4 (ENSPTRG00000021047) #13	PSAT1 (ENSPTRG00000021045) #16	CEP78 (ENSPTRG00000021044) #17	ENSPTRG00000049362	ENSPTRG00000048739	GNAQ (ENSPTRG00000021043) #19	ENSPTRG00000050740	GNA14 (ENSPTRG00000021042) #22	VPS13A (ENSPTRG00000021041) #23	FOXB2 (ENSPTRG00000029242) #24	PRUNE2 (ENSPTRG00000021038) #26	GCNT1 (ENSPTRG00000043705) #27	ENSPTRG00000047373	RFK (ENSPTRG00000021036) #28	PCSK5 (ENSPTRG00000021033) #29	OSTF1 (ENSPTRG00000021031) #30	NMRK1 (ENSPTRG00000021030) #31	CARNMT1 (ENSPTRG00000021028) #32	C9H9orf40 (ENSPTRG00000021027) #33	TRPM6 (ENSPTRG00000021026) #34	RORB (ENSPTRG00000021025) #35	ANXA1 (ENSPTRG00000021024) #36	ALDH1A1 (ENSPTRG00000021023) #37
Bonobo	MODERN SPECIES	22	IDNK (ENSPPAG00000027107)	FRMD3 (ENSPPAG00000025462)	RASEF (ENSPPAG00000042152)	ENSPPAG00000032506	ENSPPAG00000033574 ##9	SPATA31D1 (ENSPPAG00000036570) ##9	ENSPPAG00000029676 ##9	TLE1 (ENSPPAG00000036940) #10	TLE4 (ENSPPAG00000040003) #13	PSAT1 (ENSPPAG00000036829) #16	CEP78 (ENSPPAG00000040548) #17	ENSPPAG00000034884	ENSPPAG00000042095	GNAQ (ENSPPAG00000028510) #19	ENSPPAG00000042939	ENSPPAG00000040048 #22	VPS13A (ENSPPAG00000005660) #23	ENSPPAG00000041248 #24	PRUNE2 (ENSPPAG00000030555) #26	GCNT1 (ENSPPAG00000018525) #27	RFK (ENSPPAG00000044017) #28	PCSK5 (ENSPPAG00000027360) #29	OSTF1 (ENSPPAG00000039936) #30	NMRK1 (ENSPPAG00000033100) #31	CARNMT1 (ENSPPAG00000038872) #32	ENSPPAG00000035253 #33	TRPM6 (ENSPPAG00000030433) #34	RORB (ENSPPAG00000027216) #35	ANXA1 (ENSPPAG00000030576) #36	ALDH1A1 (ENSPPAG00000027865) #37	ENSPPAG00000042355
Orangutan	MODERN SPECIES	22	C9orf64 (ENSPPYG00000019326)	KIF27 (ENSPPYG00000019325)	GKAP1 (ENSPPYG00000019324)	UBQLN1 (ENSPPYG00000019323)	IDNK (ENSPPYG00000033310)	FRMD3 (ENSPPYG00000019321)	RASEF (ENSPPYG00000019320)	ENSPPYG00000031794 ##9	ENSPPYG00000037427 ##9	TLE1 (ENSPPYG00000019316) #10	TLE4 (ENSPPYG00000019315) #13	ENSPPYG00000019314	PSAT1 (ENSPPYG00000019313) #16	CEP78 (ENSPPYG00000019312) #17	GNAQ (ENSPPYG00000019311) #19	GNA14 (ENSPPYG00000019310) #22	VPS13A (ENSPPYG00000019309) #23	PRUNE2 (ENSPPYG00000019305) #26	GCNT1 (ENSPPYG00000019304) #27	ENSPPYG00000019303	RFK (ENSPPYG00000019302) #28	PCSK5 (ENSPPYG00000019301) #29	OSTF1 (ENSPPYG00000035050) #30	ENSPPYG00000032582	NMRK1 (ENSPPYG00000019299) #31	CARNMT1 (ENSPPYG00000019298) #32	C9orf40 (ENSPPYG00000036469) #33	TRPM6 (ENSPPYG00000019295) #34	RORB (ENSPPYG00000019294) #35	ANXA1 (ENSPPYG00000019293) #36	ALDH1A1 (ENSPPYG00000019292) #37
Gibbon	MODERN SPECIES	10	C9orf64 (ENSNLEG00000003473)	KIF27 (ENSNLEG00000003410)	GKAP1 (ENSNLEG00000003375)	UBQLN1 (ENSNLEG00000003306)	IDNK (ENSNLEG00000034109)	FRMD3 (ENSNLEG00000003288)	RASEF (ENSNLEG00000003245)	ENSNLEG00000003238 ##9	ENSNLEG00000033199 ##9	TLE1 (ENSNLEG00000003182) #10	ENSNLEG00000029249	TLE4 (ENSNLEG00000003084) #13	PSAT1 (ENSNLEG00000002989) #16	CEP78 (ENSNLEG00000002920) #17	GNAQ (ENSNLEG00000002860) #19	GNA14 (ENSNLEG00000002821) #22	ENSNLEG00000033637	VPS13A (ENSNLEG00000002199) #23	ENSNLEG00000030344 #26	PRUNE2 (ENSNLEG00000002079) #26	GCNT1 (ENSNLEG00000034138) #27	RFK (ENSNLEG00000035200) #28	PCSK5 (ENSNLEG00000001931) #29	OSTF1 (ENSNLEG00000001854) #30	NMRK1 (ENSNLEG00000001798) #31	CARNMT1 (ENSNLEG00000034652) #32	ENSNLEG00000001769 #33	ENSNLEG00000028548	TRPM6 (ENSNLEG00000001498) #34	RORB (ENSNLEG00000001398) #35	ANXA1 (ENSNLEG00000001203) #36
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00550000074980.b	ENSGT00950000183043.a.b.b.a.b.kb.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.a.a #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00510000047030.xb.a.c.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00550000074980.b	ENSGT00950000183043.a.b.b.a.b.kb.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.a.a #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00510000047030.xb.a.c.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b.a #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00550000074980.b	ENSGT00950000183043.a.b.b.a.b.kb.b ##9	ENSGT00950000183043.a.b.b.a.b.kb.a ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.a.a #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00510000047030.xb.a.c.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b.a #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00550000074980.b	ENSGT00950000183043.a.b.b.a.b.kb.b ##9	ENSGT00950000183043.a.b.b.a.b.kb.a ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.a.a #16	ENSGT00390000013287 #17	ENSGT00940000161347.d #19	ENSGT00510000047030.xb.a.c.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b.a #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Olive baboon	MODERN SPECIES	4	UBQLN1 (ENSPANG00000024877)	ENSPANG00000024897	ENSPANG00000046148	FRMD3 (ENSPANG00000024898)	RASEF (ENSPANG00000024899)	ENSPANG00000024906 ##9	TLE1 (ENSPANG00000024905) #10	ENSPANG00000024904	ENSPANG00000039137	ENSPANG00000041233	TLE4 (ENSPANG00000024903) #13	ENSPANG00000041116 ##8	ENSPANG00000024902 #16	CEP78 (ENSPANG00000024901) #17	GNAQ (ENSPANG00000024900) #19	GNA14 (ENSPANG00000024922) #22	VPS13A (ENSPANG00000024938) #23	ENSPANG00000051369	ENSPANG00000045275	ENSPANG00000049454	PRUNE2 (ENSPANG00000024936) #26	GCNT1 (ENSPANG00000011524) #27	RFK (ENSPANG00000033522) #28	PCSK5 (ENSPANG00000024934) #29	OSTF1 (ENSPANG00000024933) #30	NMRK1 (ENSPANG00000024931) #31	CARNMT1 (ENSPANG00000024930) #32	ENSPANG00000044337	C9orf40 (ENSPANG00000030522) #33	ENSPANG00000043661	TRPM6 (ENSPANG00000024928) #34
Cercopithecinae_d	ANCESTRAL SPECIES	34	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00550000074980.b	ENSGT00950000183043.a.b.b.a.b.kb.b ##9	ENSGT00950000183043.a.b.b.a.b.kb.a ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.a.a #16	ENSGT00390000013287 #17	ENSGT00940000161347.d #19	ENSGT00510000047030.xb.a.c.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b.a #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Drill	MODERN SPECIES	884													ENSMLEG00000001685 #16	CEP78 (ENSMLEG00000018621) #17	GNAQ (ENSMLEG00000029020) #19	GNA14 (ENSMLEG00000031725) #22	ENSMLEG00000043370	VPS13A (ENSMLEG00000029984) #23	PRUNE2 (ENSMLEG00000036315) #26	GCNT1 (ENSMLEG00000020969) #27	ENSMLEG00000034323 #28	PCSK5 (ENSMLEG00000039394) #29
Sooty mangabey	MODERN SPECIES	629	UBQLN1 (ENSCATG00000041838)	IDNK (ENSCATG00000041475)	FRMD3 (ENSCATG00000033534)	ENSCATG00000021632	ENSCATG00000040297	ENSCATG00000038993 ##9	ENSCATG00000021583 ##9	TLE1 (ENSCATG00000033789) #10	TLE4 (ENSCATG00000022648) #13	ENSCATG00000044621 #16	CEP78 (ENSCATG00000036923) #17	ENSCATG00000021563	ENSCATG00000044511	ENSCATG00000003045 #19	ENSCATG00000043408	GNA14 (ENSCATG00000003306) #22	VPS13A (ENSCATG00000036715) #23	ENSCATG00000044702	FOXB2 (ENSCATG00000022251) #24	PRUNE2 (ENSCATG00000041249) #26	ENSCATG00000035860 #28	PCSK5 (ENSCATG00000032835) #29	OSTF1 (ENSCATG00000043742) #30	NMRK1 (ENSCATG00000032637) #31	CARNMT1 (ENSCATG00000029180) #32	ENSCATG00000044017	C9orf40 (ENSCATG00000042316) #33	TRPM6 (ENSCATG00000040469) #34	RORB (ENSCATG00000043441) #35	ANXA1 (ENSCATG00000032811) #36	CYP1D1 (ENSCATG00000017926)
Macaca	ANCESTRAL SPECIES	10	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00550000074980.b	ENSGT00950000183043.a.b.b.a.b.kb.b ##9	ENSGT00950000183043.a.b.b.a.b.kb.a ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234620.a.a.a.a.a.b.l.a.b	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.a.a #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b.a #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Pig-tailed macaque	MODERN SPECIES	272	RASEF (ENSMNEG00000044341)	ENSMNEG00000039588	ENSMNEG00000040526 ##9	ENSMNEG00000037264 ##9	TLE1 (ENSMNEG00000045296) #10	ENSMNEG00000043496	ENSMNEG00000031137	TLE4 (ENSMNEG00000041600) #13	ENSMNEG00000035579 #16	CEP78 (ENSMNEG00000035338) #17	ENSMNEG00000030187	ENSMNEG00000044136	GNAQ (ENSMNEG00000029362) #19	ENSMNEG00000014454	ENSMNEG00000014845	GNA14 (ENSMNEG00000040924) #22	VPS13A (ENSMNEG00000033084) #23	FOXB2 (ENSMNEG00000023676) #24	PRUNE2 (ENSMNEG00000036658) #26	GCNT1 (ENSMNEG00000007369) #27	ENSMNEG00000036738 #28	PCSK5 (ENSMNEG00000025347) #29	OSTF1 (ENSMNEG00000040401) #30	NMRK1 (ENSMNEG00000017921) #31	CARNMT1 (ENSMNEG00000042764) #32	ENSMNEG00000040689	C9orf40 (ENSMNEG00000042694) #33	TRPM6 (ENSMNEG00000042106) #34	RORB (ENSMNEG00000042439) #35	ANXA1 (ENSMNEG00000028666) #36	CYP1D1 (ENSMNEG00000037174)
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b.kb.b ##9	ENSGT00950000183043.a.b.b.a.b.kb.a ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234620.a.a.a.a.a.b.l.a.b	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.a.a #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b.a #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Rhesus	MODERN SPECIES	6	RASEF (ENSMMUG00000005988)	ENSMMUG00000064274	ENSMMUG00000050566	ENSMMUG00000060364	ENSMMUG00000059900	ENSMMUG00000015181 ##9	ENSMMUG00000043575 ##9	TLE1 (ENSMMUG00000003718) #10	ENSMMUG00000006148	TLE4 (ENSMMUG00000023365) #13	ENSMMUG00000061519	ENSMMUG00000056840	PSAT1 (ENSMMUG00000011868) #16	CEP78 (ENSMMUG00000013003) #17	GNAQ (ENSMMUG00000055875) #19	GNA14 (ENSMMUG00000019761) #22	VPS13A (ENSMMUG00000019754) #23	FOXB2 (ENSMMUG00000021769) #24	PRUNE2 (ENSMMUG00000001043) #26	GCNT1 (ENSMMUG00000060380) #27	RFK (ENSMMUG00000057759) #28	PCSK5 (ENSMMUG00000022023) #29	OSTF1 (ENSMMUG00000010401) #30	NMRK1 (ENSMMUG00000010400) #31	CARNMT1 (ENSMMUG00000010399) #32	TRPM6 (ENSMMUG00000013102) #34	RORB (ENSMMUG00000012571) #35	ENSMMUG00000061106	ANXA1 (ENSMMUG00000012667) #36	CYP1D1 (ENSMMUG00000020548)	ALDH1A1 (ENSMMUG00000013303) #37
Crab-eating macaque	MODERN SPECIES	6	GKAP1 (ENSMFAG00000002304)	UBQLN1 (ENSMFAG00000038703)	IDNK (ENSMFAG00000025314)	FRMD3 (ENSMFAG00000042216)	RASEF (ENSMFAG00000046414)	ENSMFAG00000035600 ##9	TLE1 (ENSMFAG00000042116) #10	ENSMFAG00000052030	ENSMFAG00000052460	TLE4 (ENSMFAG00000031817) #13	ENSMFAG00000032662 #16	CEP78 (ENSMFAG00000023050) #17	ENSMFAG00000065595	ENSMFAG00000056118	GNAQ (ENSMFAG00000003921) #19	GNA14 (ENSMFAG00000043028) #22	VPS13A (ENSMFAG00000001206) #23	ENSMFAG00000064329	ENSMFAG00000001184	FOXB2 (ENSMFAG00000017898) #24	PRUNE2 (ENSMFAG00000046406) #26	GCNT1 (ENSMFAG00000023079) #27	RFK (ENSMFAG00000044343) #28	ENSMFAG00000064744	PCSK5 (ENSMFAG00000039542) #29	ENSMFAG00000064432	OSTF1 (ENSMFAG00000065664) #30	NMRK1 (ENSMFAG00000002149) #31	CARNMT1 (ENSMFAG00000055475) #32	TRPM6 (ENSMFAG00000042901) #34	RORB (ENSMFAG00000046226) #35
Vervet Monkey	MODERN SPECIES	3	RMI1 (ENSCSAG00000018503)	ENSCSAG00000007560	C9orf64 (ENSCSAG00000007582)	KIF27 (ENSCSAG00000007594)	GKAP1 (ENSCSAG00000007603)	UBQLN1 (ENSCSAG00000007613)	IDNK (ENSCSAG00000007619)	FRMD3 (ENSCSAG00000007627)	RASEF (ENSCSAG00000007663)	ENSCSAG00000007683 ##9	TLE1 (ENSCSAG00000007687) #10	TLE4 (ENSCSAG00000007699) #13	ENSCSAG00000007705 #16	CEP78 (ENSCSAG00000007718) #17	GNAQ (ENSCSAG00000007724) #19	GNA14 (ENSCSAG00000007735) #22	VPS13A (ENSCSAG00000007781) #23	GCNT1 (ENSCSAG00000018501) #27	RFK (ENSCSAG00000007800) #28	PCSK5 (ENSCSAG00000007915) #29	OSTF1 (ENSCSAG00000007971) #30	NMRK1 (ENSCSAG00000007978) #31	CARNMT1 (ENSCSAG00000007984) #32	C9orf40 (ENSCSAG00000007989) #33	TRPM6 (ENSCSAG00000008115) #34	RORB (ENSCSAG00000008161) #35	ANXA1 (ENSCSAG00000008173) #36	CYP1D1 (ENSCSAG00000008181)	ALDH1A1 (ENSCSAG00000008188) #37	TMC1 (ENSCSAG00000008231)	ZFAND5 (ENSCSAG00000008265)
Rhinopithecus	ANCESTRAL SPECIES	197											ENSGT00390000010391.w.a	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.a.a #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.`b #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Golden snub-nosed monkey	MODERN SPECIES	1158													ENSRROG00000039847 #16	CEP78 (ENSRROG00000040568) #17	GNAQ (ENSRROG00000041250) #19	GNA14 (ENSRROG00000037116) #22	ENSRROG00000027453	ENSRROG00000034738	ENSRROG00000037262 #23
Black snub-nosed monkey	MODERN SPECIES	1096								ENSRBIG00000012060	TLE4 (ENSRBIG00000030332) #13	ENSRBIG00000035546 #16	CEP78 (ENSRBIG00000044796) #17	ENSRBIG00000032897	GNAQ (ENSRBIG00000042001) #19	ENSRBIG00000002072	ENSRBIG00000024188	GNA14 (ENSRBIG00000028274) #22	VPS13A (ENSRBIG00000007952) #23	ENSRBIG00000023197	FOXB2 (ENSRBIG00000030572) #24	PRUNE2 (ENSRBIG00000040675) #26	RFK (ENSRBIG00000036195) #28	PCSK5 (ENSRBIG00000039511) #29	OSTF1 (ENSRBIG00000031483) #30	NMRK1 (ENSRBIG00000033112) #31	CARNMT1 (ENSRBIG00000044281) #32	C9orf40 (ENSRBIG00000020651) #33	TRPM6 (ENSRBIG00000012146) #34
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158947.v	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.c #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348.d #27	ENSGT00550000075030.n	ENSGT00390000015537.cb #28	ENSGT00940000155770 #29	ENSGT00940000161942.a.a.a.b.b.a.a	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164.i #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Mas night monkey	MODERN SPECIES	703																GNA14 (ENSANAG00000019616) #22	VPS13A (ENSANAG00000034677) #23
Cebidae	ANCESTRAL SPECIES	7	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158947.v	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.c #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348.d #27	ENSGT00550000075030.n	ENSGT00390000015537.cb #28	ENSGT00940000155770 #29	ENSGT00940000161942.a.a.a.b.b.a.a	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164.i #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Cebidae_a	ANCESTRAL SPECIES	85	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158947.v	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.k.c #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348.d #27	ENSGT00550000075030.n	ENSGT00390000015537.cb #28	ENSGT00940000155770 #29	ENSGT00940000161942.a.a.a.b.b.a.a	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164.i #34	ENSGT00940000157708 #35
Capuchin	MODERN SPECIES	150										TLE4 (ENSCCAG00000033488) #13	ENSCCAG00000029236 #16	CEP78 (ENSCCAG00000031635) #17	ENSCCAG00000014391	GNAQ (ENSCCAG00000028987) #19	ENSCCAG00000027642	GNA14 (ENSCCAG00000022875) #22	VPS13A (ENSCCAG00000032548) #23	FOXB2 (ENSCCAG00000019520) #24	PRUNE2 (ENSCCAG00000031291) #26	ENSCCAG00000017058 #27	ENSCCAG00000034465	ENSCCAG00000026186 #28	PCSK5 (ENSCCAG00000030269) #29	ENSCCAG00000033511	OSTF1 (ENSCCAG00000026237) #30	NMRK1 (ENSCCAG00000012965) #31	CARNMT1 (ENSCCAG00000034529) #32	ENSCCAG00000015037	C9orf40 (ENSCCAG00000033663) #33	TRPM6 (ENSCCAG00000036659) #34	RORB (ENSCCAG00000027613) #35
Bolivian squirrel monkey	MODERN SPECIES	43	ENSSBOG00000029007	AIF1L (ENSSBOG00000026358)	LAMC3 (ENSSBOG00000029307)	FIBCD1 (ENSSBOG00000031329)	ABL1 (ENSSBOG00000029514)	EXOSC2 (ENSSBOG00000022712)	ENSSBOG00000029129	FUBP3 (ENSSBOG00000021755)	ENSSBOG00000021830	HMCN2 (ENSSBOG00000033989)	ENSSBOG00000026941	ENSSBOG00000020286	PSAT1 (ENSSBOG00000035275) #16	CEP78 (ENSSBOG00000025965) #17	GNAQ (ENSSBOG00000021413) #19	GNA14 (ENSSBOG00000027170) #22	VPS13A (ENSSBOG00000020923) #23	FOXB2 (ENSSBOG00000024647) #24	PRUNE2 (ENSSBOG00000023559) #26	GCNT1 (ENSSBOG00000018905) #27	ENSSBOG00000032040	ENSSBOG00000019534 #28	PCSK5 (ENSSBOG00000009773) #29	ENSSBOG00000009396	OSTF1 (ENSSBOG00000027446) #30	NMRK1 (ENSSBOG00000032396) #31	CARNMT1 (ENSSBOG00000029802) #32	TRPM6 (ENSSBOG00000030648) #34	RORB (ENSSBOG00000024252) #35	ENC1 (ENSSBOG00000018607)	ENSSBOG00000011145
Marmoset	MODERN SPECIES		KCNV2 (ENSCJAG00000042809)	VLDLR (ENSCJAG00000010772)	ENSCJAG00000042690	SMARCA2 (ENSCJAG00000010710)	DMRT2 (ENSCJAG00000010690)	DMRT3 (ENSCJAG00000063670)	ENSCJAG00000084547	KANK1 (ENSCJAG00000010595)	DOCK8 (ENSCJAG00000010485)	ENSCJAG00000078334	ENSCJAG00000054365 ##9	ENSCJAG00000010423	ENSCJAG00000040149	ENSCJAG00000073324 ##9	ENSCJAG00000085396	ENSCJAG00000074827 #22	ENSCJAG00000003147 #23	ENSCJAG00000032275	ENSCJAG00000054232 ##9	ENSCJAG00000084872	ENSCJAG00000072998	ENSCJAG00000003266	GNAQ (ENSCJAG00000003268) #19	ENSCJAG00000042365	CEP78 (ENSCJAG00000003289) #17	PSAT1 (ENSCJAG00000003319) #16	ENSCJAG00000052461	ENSCJAG00000084238	TLE4 (ENSCJAG00000003336) #13	ENSCJAG00000083224	ENSCJAG00000072614
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Tree shrew	MODERN SPECIES	5706															ENSTBEG00000009447	GNA14 (ENSTBEG00000009389) #22	VPS13A (ENSTBEG00000006487) #23
Glires	ANCESTRAL SPECIES	9	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Lagomorpha	ANCESTRAL SPECIES	77													ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Rabbit	MODERN SPECIES		ENSOCUG00000027755 ##9	ENSOCUG00000034184	ENSOCUG00000023951	ENSOCUG00000032438	ENSOCUG00000027027	ENSOCUG00000035151 #10	ENSOCUG00000000531 #10	ENSOCUG00000022657	ENSOCUG00000032761	TLE4 (ENSOCUG00000011891) #13	ENSOCUG00000024344	ENSOCUG00000026996	PSAT1 (ENSOCUG00000007765) #16	CEP78 (ENSOCUG00000007758) #17	GNAQ (ENSOCUG00000016559) #19	GNA14 (ENSOCUG00000005507) #22	VPS13A (ENSOCUG00000001328) #23	FOXB2 (ENSOCUG00000002111) #24	PRUNE2 (ENSOCUG00000008553) #26	GCNT1 (ENSOCUG00000007916) #27	ENSOCUG00000001622 #28	PCSK5 (ENSOCUG00000001616) #29	ENSOCUG00000028054	ENSOCUG00000017040 #30	ENSOCUG00000017026 #31	CARNMT1 (ENSOCUG00000017017) #32	C9orf40 (ENSOCUG00000006076) #33	TRPM6 (ENSOCUG00000003734) #34	RORB (ENSOCUG00000003732) #35	ENSOCUG00000026323	ENSOCUG00000024168
Pika	MODERN SPECIES	4435															GNAQ (ENSOPRG00000009904) #19	GNA14 (ENSOPRG00000009880) #22	VPS13A (ENSOPRG00000009741) #23
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Hystricomorpha	ANCESTRAL SPECIES	46		ENSGT00940000154461.`c	ENSGT00940000154294.k.a	ENSGT01030000234669.A	ENSGT01090000260018.D.d.a	ENSGT01090000260018.A.a.b	ENSGT00940000162750	ENSGT00530000063632.B	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00940000154461.`c	ENSGT00940000154294.k.a	ENSGT00940000154294.k.b	ENSGT00940000154294.l	ENSGT01030000234669.A	ENSGT01090000260018.A.a.b	ENSGT00940000162750	ENSGT00530000063632.B	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Guinea pig	MODERN SPECIES	21				RACK1 (ENSCPOG00000008724)	TRIM41 (ENSCPOG00000022446)	TRIM7 (ENSCPOG00000034919)	ZFP62 (ENSCPOG00000037011)	MGAT1 (ENSCPOG00000032870)	RASEF (ENSCPOG00000005004)	TLE1 (ENSCPOG00000013582) #10	TLE4 (ENSCPOG00000010034) #13	PSAT1 (ENSCPOG00000030281) #16	CEP78 (ENSCPOG00000009445) #17	GNAQ (ENSCPOG00000034812) #19	ENSCPOG00000019876	GNA14 (ENSCPOG00000005387) #22	VPS13A (ENSCPOG00000006841) #23	PRUNE2 (ENSCPOG00000040525) #26	GCNT1 (ENSCPOG00000013671) #27	RFK (ENSCPOG00000038626) #28	PCSK5 (ENSCPOG00000002680) #29	OSTF1 (ENSCPOG00000007226) #30	NMRK1 (ENSCPOG00000039820) #31	CARNMT1 (ENSCPOG00000034337) #32	TRPM6 (ENSCPOG00000011221) #34	RORB (ENSCPOG00000010612) #35	ANXA1 (ENSCPOG00000014597) #36	ENSCPOG00000037891 #37	ENSCPOG00000027235 #37	ENSCPOG00000039887 #37	TMC1 (ENSCPOG00000002837)
Hystricomorpha_b	ANCESTRAL SPECIES	114											ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Long-tailed chinchilla	MODERN SPECIES	219											PSAT1 (ENSCLAG00000004235) #16	CEP78 (ENSCLAG00000002278) #17	ENSCLAG00000001201	ENSCLAG00000001211	ENSCLAG00000001286	GNA14 (ENSCLAG00000001333) #22	VPS13A (ENSCLAG00000001458) #23	FOXB2 (ENSCLAG00000002151) #24	ENSCLAG00000002177 #26	ENSCLAG00000002261 #26	GCNT1 (ENSCLAG00000002318) #27	RFK (ENSCLAG00000001176) #28	PCSK5 (ENSCLAG00000001262) #29	OSTF1 (ENSCLAG00000001314) #30	NMRK1 (ENSCLAG00000001323) #31	ENSCLAG00000001350 #32	TRPM6 (ENSCLAG00000001382) #34	RORB (ENSCLAG00000001463) #35	ENSCLAG00000001590 #36	ENSCLAG00000001755 #37	ENSCLAG00000001772 #37
Degu	MODERN SPECIES	136		TLE1 (ENSODEG00000003417) #10	ENSODEG00000018969	ENSODEG00000018925	ENSODEG00000003548	ENSODEG00000003198	TLE4 (ENSODEG00000003247) #13	ENSODEG00000018932	ENSODEG00000003341	ENSODEG00000018927	ENSODEG00000003369 #16	ENSODEG00000003423	CEP78 (ENSODEG00000003443) #17	GNAQ (ENSODEG00000003488) #19	ENSODEG00000003499	GNA14 (ENSODEG00000003528) #22	ENSODEG00000003546	VPS13A (ENSODEG00000003608) #23	FOXB2 (ENSODEG00000018997) #24	ENSODEG00000019009	ENSODEG00000018936	ENSODEG00000003738 #26	ENSODEG00000003761 #26	GCNT1 (ENSODEG00000018998) #27	RFK (ENSODEG00000003081) #28	ENSODEG00000003128 #29	ENSODEG00000003169	OSTF1 (ENSODEG00000003195) #30	NMRK1 (ENSODEG00000003218) #31	CARNMT1 (ENSODEG00000003242) #32	TRPM6 (ENSODEG00000003284) #34
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000048766	ENSHGLG00000047277 ##9	ENSHGLG00000048302	ENSHGLG00000000915	ENSHGLG00000001072 #10	ENSHGLG00000019837	TLE4 (ENSHGLG00000002102) #13	ENSHGLG00000044467	ENSHGLG00000000755 #16	ENSHGLG00000002547 #17	ENSHGLG00000038481	ENSHGLG00000007997	ENSHGLG00000002513	ENSHGLG00000036185	ENSHGLG00000002009	ENSHGLG00000001656 #22	VPS13A (ENSHGLG00000000572) #23	FOXB2 (ENSHGLG00000001812) #24	ENSHGLG00000036846 #26	ENSHGLG00000040487 #26	GCNT1 (ENSHGLG00000000522) #27	ENSHGLG00000000486 #28	ENSHGLG00000000259 #29	ENSHGLG00000050620	ENSHGLG00000042174	ENSHGLG00000049071 #30	ENSHGLG00000044788 #31	ENSHGLG00000002210	CARNMT1 (ENSHGLG00000000378) #32	ENSHGLG00000033948	ENSHGLG00000050025
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374.u	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Marmotini	ANCESTRAL SPECIES	1										ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Marmotini_b	ANCESTRAL SPECIES	88										ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Squirrel	MODERN SPECIES	103															GNAQ (ENSSTOG00000024755) #19	GNA14 (ENSSTOG00000008680) #22	VPS13A (ENSSTOG00000008587) #23	ENSSTOG00000033146 #24	ENSSTOG00000026412	PRUNE2 (ENSSTOG00000023589) #26	GCNT1 (ENSSTOG00000012068) #27	ENSSTOG00000027323	RFK (ENSSTOG00000012064) #28	ENSSTOG00000020987 ##8	PCSK5 (ENSSTOG00000012040) #29	OSTF1 (ENSSTOG00000023378) #30	NMRK1 (ENSSTOG00000000389) #31	CARNMT1 (ENSSTOG00000000385) #32	TRPM6 (ENSSTOG00000013271) #34	RORB (ENSSTOG00000013264) #35	ANXA1 (ENSSTOG00000023530) #36
Arctic ground squirrel	MODERN SPECIES	131												TLE4 (ENSUPAG00010021868) #13	PSAT1 (ENSUPAG00010021862) #16	CEP78 (ENSUPAG00010021857) #17	ENSUPAG00010021855	GNA14 (ENSUPAG00010021852) #22	VPS13A (ENSUPAG00010021846) #23	FOXB2 (ENSUPAG00010021845) #24	ENSUPAG00010021844	PRUNE2 (ENSUPAG00010021836) #26	GCNT1 (ENSUPAG00010021834) #27	ENSUPAG00010021831	RFK (ENSUPAG00010021827) #28	ENSUPAG00010021821 #29
Alpin marmot	MODERN SPECIES	32									RASEF (ENSMMMG00000018363)	TLE1 (ENSMMMG00000012607) #10	ENSMMMG00000012571	TLE4 (ENSMMMG00000012524) #13	PSAT1 (ENSMMMG00000012517) #16	CEP78 (ENSMMMG00000012498) #17	GNAQ (ENSMMMG00000012272) #19	GNA14 (ENSMMMG00000012248) #22	VPS13A (ENSMMMG00000012153) #23	ENSMMMG00000012137 #24	ENSMMMG00000012128	PRUNE2 (ENSMMMG00000012039) #26	GCNT1 (ENSMMMG00000012027) #27	RFK (ENSMMMG00000012015) #28	ENSMMMG00000011961 #29	ENSMMMG00000011953	ENSMMMG00000011944	OSTF1 (ENSMMMG00000011932) #30	NMRK1 (ENSMMMG00000011918) #31	ENSMMMG00000011915	ENSMMMG00000011905 #33	TRPM6 (ENSMMMG00000011876) #34	RORB (ENSMMMG00000011844) #35
Eurasian red squirrel	MODERN SPECIES	6	ENSSVLG00005025192	GKAP1 (ENSSVLG00005025203)	ENSSVLG00005025241	UBQLN1 (ENSSVLG00005025254)	IDNK (ENSSVLG00005025283)	ENSSVLG00005025340	FRMD3 (ENSSVLG00005025365)	RASEF (ENSSVLG00005025415)	TLE1 (ENSSVLG00005025442) #10	ENSSVLG00005025469	TLE4 (ENSSVLG00005025580) #13	ENSSVLG00005025732	PSAT1 (ENSSVLG00005025737) #16	ENSSVLG00005025778 #17	ENSSVLG00005025826	GNA14 (ENSSVLG00005025833) #22	VPS13A (ENSSVLG00005025879) #23	ENSSVLG00005025921	FOXB2 (ENSSVLG00005014521) #24	PRUNE2 (ENSSVLG00005014607) #26	ENSSVLG00005014936	ENSSVLG00005015000	GCNT1 (ENSSVLG00005015046) #27	ENSSVLG00005015067 #28	PCSK5 (ENSSVLG00005015142) #29	ENSSVLG00005015236	ENSSVLG00005015253	OSTF1 (ENSSVLG00005015295) #30	NMRK1 (ENSSVLG00005015348) #31	CARNMT1 (ENSSVLG00005015445) #32	C9orf40 (ENSSVLG00005015497) #33
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Muroidea	ANCESTRAL SPECIES	1	ENSGT00950000182916.a.b.a.b	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Muroidea_A	ANCESTRAL SPECIES		ENSGT01060000248581.A.a.a.a.e.b	ENSGT01100000263561.B	ENSGT01060000248581.A.a.a.a.e.a	ENSGT01060000248581.A.a.a.a.f	ENSGT00940000162899	ENSGT01100000263494.a.b.a.a.a.b.c	ENSGT01100000263494.a.b.a.a.a.a.o.b	ENSGT01100000263494.a.b.a.a.a.a.p	ENSGT01100000263494.a.b.a.a.a.b.d	ENSGT01100000263494.a.b.a.a.b	ENSGT01100000263494.a.b.a.a.a.a.o.a	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609.`b #37
Cricetidae	ANCESTRAL SPECIES	1	ENSGT01100000263561.B	ENSGT01060000248581.A.a.a.a.e.a	ENSGT01060000248581.A.a.a.a.f	ENSGT00940000162899	ENSGT01100000263494.a.b.a.a.a.b.c	ENSGT01100000263494.a.b.a.a.a.a.o.b	ENSGT01100000263494.a.b.a.a.a.a.p	ENSGT01100000263494.a.b.a.a.a.b.d	ENSGT01100000263494.a.b.a.a.b	ENSGT01100000263494.a.b.a.a.a.a.o.a	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b.f #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609.`b #37
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT01060000248581.A.a.b	ENSGT01100000263561.B	ENSGT01060000248581.A.a.a.a.e.a	ENSGT01060000248581.A.a.a.a.f	ENSGT00940000162899	ENSGT01100000263494.a.b.a.a.a.b.c	ENSGT01100000263494.a.b.a.a.a.a.o.b	ENSGT01100000263494.a.b.a.a.a.a.p	ENSGT01100000263494.a.b.a.a.a.b.d	ENSGT01100000263494.a.b.a.a.b	ENSGT01100000263494.a.b.a.a.a.a.o.a	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b.f #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609.`b #37
Northern American deer mouse	MODERN SPECIES		Or10q1 (ENSPEMG00000026262)	Or10q12 (ENSPEMG00000026052)	Or1s2 (ENSPEMG00000029030)	Or9q2 (ENSPEMG00000028521)	ENSPEMG00000027169	Or9i14 (ENSPEMG00000028210)	Or9q1 (ENSPEMG00000030928)	ENSPEMG00000005907	ENSPEMG00000029012	Tle4 (ENSPEMG00000006537) #13	ENSPEMG00000025664	Psat1 (ENSPEMG00000022279) #16	Cep78 (ENSPEMG00000013176) #17	ENSPEMG00000029390	ENSPEMG00000026093 #19	Gna14 (ENSPEMG00000022983) #22	Vps13a (ENSPEMG00000022969) #23	ENSPEMG00000001408 #24	Prune2 (ENSPEMG00000009652) #26	ENSPEMG00000025542	Gcnt1 (ENSPEMG00000024295) #27	Rfk (ENSPEMG00000031112) #28	Pcsk5 (ENSPEMG00000002720) #29	ENSPEMG00000003630	Ostf1 (ENSPEMG00000020370) #30	Nmrk1 (ENSPEMG00000013725) #31	Carnmt1 (ENSPEMG00000010072) #32	D030056L22Rik (ENSPEMG00000025661) #33	Trpm6 (ENSPEMG00000011848) #34	Rorb (ENSPEMG00000000824) #35	Anxa1 (ENSPEMG00000014478) #36
Prairie vole	MODERN SPECIES	16	Gm4952 (ENSMOCG00000015076)	Glyat (ENSMOCG00000016115)	Keg1 (ENSMOCG00000012983)	Cntf (ENSMOCG00000016049)	Zfp91 (ENSMOCG00000018468)	Lpxn (ENSMOCG00000019266)	Or5b21 (ENSMOCG00000002067)	ENSMOCG00000009033	ENSMOCG00000017684	Or9q1 (ENSMOCG00000009793)	Tle4 (ENSMOCG00000011846) #13	ENSMOCG00000017959	ENSMOCG00000021736 #16	Cep78 (ENSMOCG00000020072) #17	ENSMOCG00000012700	Gna14 (ENSMOCG00000012393) #22	ENSMOCG00000013981	Vps13a (ENSMOCG00000019974) #23	ENSMOCG00000019450	Foxb2 (ENSMOCG00000001949) #24	ENSMOCG00000009883 #26	ENSMOCG00000019381 #26	Gcnt1 (ENSMOCG00000013528) #27	Rfk (ENSMOCG00000019217) #28	ENSMOCG00000020199 #29	Ostf1 (ENSMOCG00000021405) #30	Nmrk1 (ENSMOCG00000022247) #31	Carnmt1 (ENSMOCG00000005517) #32	D030056L22Rik (ENSMOCG00000012610) #33	Trpm6 (ENSMOCG00000012817) #34	Rorb (ENSMOCG00000020519) #35
Cricetinae	ANCESTRAL SPECIES	2	ENSGT01060000248581.A.a.a.a.e.b	ENSGT01060000248581.A.a.b	ENSGT01060000248581.A.a.a.a.e.a	ENSGT01060000248581.A.a.a.a.f	ENSGT00940000162899	ENSGT01100000263494.a.b.a.a.a.b.c	ENSGT01100000263494.a.b.a.a.a.a.o.b	ENSGT01100000263494.a.b.a.a.a.a.p	ENSGT01100000263494.a.b.a.a.a.b.d	ENSGT01100000263494.a.b.a.a.b	ENSGT01100000263494.a.b.a.a.a.a.o.a	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b.f #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609.`b #37
Chinese hamster chok1gshd	MODERN SPECIES	401	ENSCGRG00001011673	ENSCGRG00001010614	Or10q1 (ENSCGRG00001012195)	Or10q12 (ENSCGRG00001011414)	Or1s2 (ENSCGRG00001011281)	Or9q2 (ENSCGRG00001012139)	ENSCGRG00001021275	Or9i14 (ENSCGRG00001021924)	Or9q1 (ENSCGRG00001011797)	ENSCGRG00001012925	ENSCGRG00001012493	Tle4 (ENSCGRG00001023373) #13	Psat1 (ENSCGRG00001010797) #16	Cep78 (ENSCGRG00001023702) #17	Gnaq (ENSCGRG00001001493)	Gna14 (ENSCGRG00001002239) #22	Vps13a (ENSCGRG00001016073) #23	Foxb2 (ENSCGRG00001010014) #24	Prune2 (ENSCGRG00001006057) #26	Gcnt1 (ENSCGRG00001007418) #27	Rfk (ENSCGRG00001013646) #28	Pcsk5 (ENSCGRG00001018685) #29	ENSCGRG00001022403	Ostf1 (ENSCGRG00001011060) #30	ENSCGRG00001005253	ENSCGRG00001008426 #31	Carnmt1 (ENSCGRG00001013615) #32	D030056L22Rik (ENSCGRG00001015201) #33	Trpm6 (ENSCGRG00001018511) #34	Rorb (ENSCGRG00001012566) #35	Anxa1 (ENSCGRG00001020144) #36
Golden Hamster	MODERN SPECIES	617	Cntf (ENSMAUG00000011143)	Zfp91 (ENSMAUG00000011095)	Lpxn (ENSMAUG00000010591)	Or5b21 (ENSMAUG00000010581)	Or5b24 (ENSMAUG00000010357)	ENSMAUG00000010348	Or5b113 (ENSMAUG00000010634)	ENSMAUG00000011427	ENSMAUG00000010391	Or9q1 (ENSMAUG00000001875)	Tle4 (ENSMAUG00000010722) #13	ENSMAUG00000010124	ENSMAUG00000010617 #16	Cep78 (ENSMAUG00000010295) #17	Gnaq (ENSMAUG00000010263)	Gna14 (ENSMAUG00000010242) #22	ENSMAUG00000009666	Vps13a (ENSMAUG00000011043) #23	Foxb2 (ENSMAUG00000002346) #24	ENSMAUG00000010050 #26	ENSMAUG00000011637 #26	Gcnt1 (ENSMAUG00000002095) #27	ENSMAUG00000011219 #29	Ostf1 (ENSMAUG00000011202) #30	Nmrk1 (ENSMAUG00000009949) #31	Carnmt1 (ENSMAUG00000009492) #32	D030056L22Rik (ENSMAUG00000009324) #33	Trpm6 (ENSMAUG00000011731) #34	Rorb (ENSMAUG00000010447) #35	Anxa1 (ENSMAUG00000009898) #36	Aldh1a1 (ENSMAUG00000010223) #37
Murinae	ANCESTRAL SPECIES		ENSGT01060000248581.A.a.b	ENSGT01060000248581.A.a.a.a.e.b	ENSGT01100000263561.B.g.a	ENSGT01060000248581.A.a.a.a.f	ENSGT00940000162899	ENSGT01100000263494.a.b.a.a.a.b.c	ENSGT01100000263494.a.b.a.a.a.a.o.b	ENSGT01100000263494.a.b.a.a.a.a.p	ENSGT01100000263494.a.b.a.a.a.b.d	ENSGT01100000263494.a.b.a.a.b	ENSGT01100000263494.a.b.a.a.a.a.o.a	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609.`b #37	ENSGT00940000154609.ab #37
Mus	ANCESTRAL SPECIES		ENSGT01060000248581.A.a.b	ENSGT01060000248581.A.a.a.a.e.b	ENSGT01100000263561.B.g.a	ENSGT01060000248581.A.a.a.a.f	ENSGT00940000162899	ENSGT01100000263494.a.b.a.a.a.b.c	ENSGT01100000263494.a.b.a.a.a.a.o.b	ENSGT01100000263494.a.b.a.a.a.a.p	ENSGT01100000263494.a.b.a.a.a.b.d	ENSGT01100000263494.a.b.a.a.b.a	ENSGT01100000263494.a.b.a.a.a.a.o.a	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609.`b #37	ENSGT00940000154609.ab #37
Mus_A	ANCESTRAL SPECIES	16	ENSGT01100000263561.B.g.a	ENSGT01060000248581.A.a.a.a.f	ENSGT00940000162899	ENSGT01100000263494.a.b.a.a.a.b.c	ENSGT01100000263494.a.b.a.a.a.a.o.b	ENSGT01100000263494.a.b.a.a.a.a.p	ENSGT01100000263494.a.b.a.a.a.b.d	ENSGT01100000263494.a.b.a.a.b.a	ENSGT01100000263494.a.b.a.a.a.a.o.a.a.a	ENSGT01100000263494.a.b.a.a.b.b	ENSGT01100000263494.a.b.a.a.a.a.o.a.a.b	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609.`b #37	ENSGT00940000154609.ab #37
Mus_B	ANCESTRAL SPECIES	16	ENSGT01100000263561.B.g.a	ENSGT01060000248581.A.a.a.a.f	ENSGT00940000162899	ENSGT01100000263494.a.b.a.a.a.b.c	ENSGT01100000263494.a.b.a.a.a.a.o.b	ENSGT01100000263494.a.b.a.a.a.a.p	ENSGT01100000263494.a.b.a.a.a.b.d	ENSGT01100000263494.a.b.a.a.b.a	ENSGT01100000263494.a.b.a.a.a.a.o.a.a.a	ENSGT01100000263494.a.b.a.a.b.b	ENSGT01100000263494.a.b.a.a.a.a.o.a.a.b	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609.`b #37	ENSGT00940000154609.ab #37
Mouse	MODERN SPECIES	10	Or10w3 (ENSMUSG00000109520)	Or10q1 (ENSMUSG00000050865)	Or10q12 (ENSMUSG00000047207)	Or1s2 (ENSMUSG00000048356)	Or9q2 (ENSMUSG00000044040)	Or9i14 (ENSMUSG00000045395)	Or9q1 (ENSMUSG00000054526)	Or9i2 (ENSMUSG00000057270)	Or9i1 (ENSMUSG00000056858)	Or9i16 (ENSMUSG00000059105)	Or9i1b (ENSMUSG00000062314)	Tle4 (ENSMUSG00000024642) #13	Psat1 (ENSMUSG00000024640) #16	Cep78 (ENSMUSG00000041491) #17	Gnaq (ENSMUSG00000024639)	Gna14 (ENSMUSG00000024697) #22	Vps13a (ENSMUSG00000046230) #23	Foxb2 (ENSMUSG00000056829) #24	Prune2 (ENSMUSG00000039126) #26	Gcnt1 (ENSMUSG00000038843) #27	Rfk (ENSMUSG00000024712) #28	Pcsk5 (ENSMUSG00000024713) #29	Ostf1 (ENSMUSG00000024725) #30	Nmrk1 (ENSMUSG00000037847) #31	Carnmt1 (ENSMUSG00000024726) #32	D030056L22Rik (ENSMUSG00000047044) #33	Trpm6 (ENSMUSG00000024727) #34	Rorb (ENSMUSG00000036192) #35	Anxa1 (ENSMUSG00000024659) #36	Aldh1a1 (ENSMUSG00000053279) #37	Aldh1a7 (ENSMUSG00000024747) #37
Mus_C	ANCESTRAL SPECIES	24	ENSGT01100000263561.B.g.a	ENSGT01060000248581.A.a.a.a.f	ENSGT00940000162899	ENSGT01100000263494.a.b.a.a.a.b.c	ENSGT01100000263494.a.b.a.a.a.a.o.b	ENSGT01100000263494.a.b.a.a.a.a.p	ENSGT01100000263494.a.b.a.a.a.b.d	ENSGT01100000263494.a.b.a.a.b.a	ENSGT01100000263494.a.b.a.a.a.a.o.a.a.a	ENSGT01100000263494.a.b.a.a.b.b	ENSGT01100000263494.a.b.a.a.a.a.o.a.b	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609.`b #37	ENSGT00940000154609.ab #37
Steppe mouse	MODERN SPECIES	3183										Tle4 (ENSMSIG00000017471) #13	ENSMSIG00000017538	Psat1 (ENSMSIG00000017588) #16	Cep78 (ENSMSIG00000017625) #17	Gnaq (ENSMSIG00000017652)	ENSMSIG00000017672	Gna14 (ENSMSIG00000017683) #22	Vps13a (ENSMSIG00000017713) #23
spretus	MODERN SPECIES	10	Or10q1b (MGP_SPRETEiJ_G0023700)	MGP_SPRETEiJ_G0023701	Or10q12 (MGP_SPRETEiJ_G0023702)	Or1s2 (MGP_SPRETEiJ_G0023703)	Or9q2 (MGP_SPRETEiJ_G0023704)	Or9i14 (MGP_SPRETEiJ_G0023705)	Or9q1 (MGP_SPRETEiJ_G0023706)	MGP_SPRETEiJ_G0023707	MGP_SPRETEiJ_G0023708	MGP_SPRETEiJ_G0023709	MGP_SPRETEiJ_G0023710	Tle4 (MGP_SPRETEiJ_G0023711) #13	Psat1 (MGP_SPRETEiJ_G0023712) #16	Cep78 (MGP_SPRETEiJ_G0023713) #17	Gnaq (MGP_SPRETEiJ_G0023714)	Gna14 (MGP_SPRETEiJ_G0023715) #22	Vps13a (MGP_SPRETEiJ_G0023716) #23	Foxb2 (MGP_SPRETEiJ_G0023717) #24	Prune2 (MGP_SPRETEiJ_G0023718) #26	Gcnt1 (MGP_SPRETEiJ_G0023719) #27	Rfk (MGP_SPRETEiJ_G0023720) #28	MGP_SPRETEiJ_G0023721 #29	Ostf1 (MGP_SPRETEiJ_G0023722) #30	Nmrk1 (MGP_SPRETEiJ_G0023723) #31	MGP_SPRETEiJ_G0023724 #32	D030056L22Rik (MGP_SPRETEiJ_G0023725) #33	Trpm6 (MGP_SPRETEiJ_G0023726) #34	Rorb (MGP_SPRETEiJ_G0023727) #35	Anxa1 (MGP_SPRETEiJ_G0023728) #36	MGP_SPRETEiJ_G0023729 #37	MGP_SPRETEiJ_G0023730 #37
Ryukyu mouse	MODERN SPECIES	10	Or10q1b (MGP_CAROLIEiJ_G0022781)	Or10q1 (MGP_CAROLIEiJ_G0022782)	MGP_CAROLIEiJ_G0022783	Or1s2 (MGP_CAROLIEiJ_G0022784)	Or9q2 (MGP_CAROLIEiJ_G0022785)	Or9i14 (MGP_CAROLIEiJ_G0022786)	Or9q1 (MGP_CAROLIEiJ_G0022787)	Or9i2 (MGP_CAROLIEiJ_G0022788)	Or9i1 (MGP_CAROLIEiJ_G0022789)	Or9i16 (MGP_CAROLIEiJ_G0022790)	Or9i1b (MGP_CAROLIEiJ_G0022791)	Tle4 (MGP_CAROLIEiJ_G0022792) #13	Psat1 (MGP_CAROLIEiJ_G0022793) #16	Cep78 (MGP_CAROLIEiJ_G0022794) #17	Gnaq (MGP_CAROLIEiJ_G0022795)	Gna14 (MGP_CAROLIEiJ_G0022796) #22	Vps13a (MGP_CAROLIEiJ_G0022797) #23	Foxb2 (MGP_CAROLIEiJ_G0022798) #24	Prune2 (MGP_CAROLIEiJ_G0022799) #26	Gcnt1 (MGP_CAROLIEiJ_G0022800) #27	Rfk (MGP_CAROLIEiJ_G0022801) #28	MGP_CAROLIEiJ_G0022802 #29	Ostf1 (MGP_CAROLIEiJ_G0022803) #30	Nmrk1 (MGP_CAROLIEiJ_G0022804) #31	Carnmt1 (MGP_CAROLIEiJ_G0022805) #32	D030056L22Rik (MGP_CAROLIEiJ_G0022806) #33	Trpm6 (MGP_CAROLIEiJ_G0022807) #34	Rorb (MGP_CAROLIEiJ_G0022808) #35	Anxa1 (MGP_CAROLIEiJ_G0022809) #36	Aldh1a1 (MGP_CAROLIEiJ_G0022810) #37	Aldh1a7 (MGP_CAROLIEiJ_G0022811) #37
Shrew mouse	MODERN SPECIES		Or5b124 (MGP_PahariEiJ_G0014276)	Or10w1 (MGP_PahariEiJ_G0014277)	Or10q1b (MGP_PahariEiJ_G0014278)	Or10q1 (MGP_PahariEiJ_G0014279)	MGP_PahariEiJ_G0014280	Or1s2 (MGP_PahariEiJ_G0014281)	Or9q2 (MGP_PahariEiJ_G0014282)	MGP_PahariEiJ_G0014283	Or9q1 (MGP_PahariEiJ_G0014284)	Or9i2 (MGP_PahariEiJ_G0014285)	Or9i16 (MGP_PahariEiJ_G0014286)	Tle4 (MGP_PahariEiJ_G0014287) #13	Psat1 (MGP_PahariEiJ_G0014288) #16	Cep78 (MGP_PahariEiJ_G0014289) #17	Gnaq (MGP_PahariEiJ_G0014290)	Gna14 (MGP_PahariEiJ_G0014291) #22	Vps13a (MGP_PahariEiJ_G0014292) #23	Foxb2 (MGP_PahariEiJ_G0014293) #24	Prune2 (MGP_PahariEiJ_G0014294) #26	Gcnt1 (MGP_PahariEiJ_G0014295) #27	MGP_PahariEiJ_G0014296 #28	MGP_PahariEiJ_G0014297 #29	Ostf1 (MGP_PahariEiJ_G0014298) #30	Nmrk1 (MGP_PahariEiJ_G0014299) #31	D030056L22Rik (MGP_PahariEiJ_G0014300) #33	Trpm6 (MGP_PahariEiJ_G0014301) #34	Rorb (MGP_PahariEiJ_G0014302) #35	Anxa1 (MGP_PahariEiJ_G0014303) #36	Aldh1a1 (MGP_PahariEiJ_G0014304) #37	Aldh1a7 (MGP_PahariEiJ_G0014305) #37	Tmc1 (MGP_PahariEiJ_G0014306)
Rat	MODERN SPECIES		Or10w3 (ENSRNOG00000067633)	Or10q1 (ENSRNOG00000068256)	Or10q12 (ENSRNOG00000032600)	Or1s2 (ENSRNOG00000013192)	Or9q2 (ENSRNOG00000013198)	Or9i13 (ENSRNOG00000031224)	Or9q1 (ENSRNOG00000023530)	Or9i16 (ENSRNOG00000064819)	Or9i14 (ENSRNOG00000013208)	Or9i2 (ENSRNOG00000063548)	Or9i1b (ENSRNOG00000032117)	Tle4 (ENSRNOG00000013239) #13	Psat1 (ENSRNOG00000013971) #16	Cep78 (ENSRNOG00000014041) #17	Gnaq (ENSRNOG00000014183)	Gna14 (ENSRNOG00000014840) #22	Vps13a (ENSRNOG00000025539) #23	Foxb2 (ENSRNOG00000032137) #24	Prune2 (ENSRNOG00000015088) #26	Gcnt1 (ENSRNOG00000062686) #27	LOC120099997 (ENSRNOG00000022308)	Rfk (ENSRNOG00000022273) #28	Pcsk5 (ENSRNOG00000012036) #29	Ostf1 (ENSRNOG00000012156) #30	Nmrk1 (ENSRNOG00000012665) #31	Carnmt1 (ENSRNOG00000012872) #32	C1h9orf40 (ENSRNOG00000025644) #33	Trpm6 (ENSRNOG00000013053) #34	Rorb (ENSRNOG00000013413) #35	LOC108349792 (ENSRNOG00000029732)	ENSRNOG00000063861
Upper Galilee mountains blind mole rat	MODERN SPECIES	843															Gnaq (ENSNGAG00000021391)	Gna14 (ENSNGAG00000022142) #22	ENSNGAG00000000620	Vps13a (ENSNGAG00000018000) #23	Foxb2 (ENSNGAG00000008321) #24	ENSNGAG00000022504 #26	ENSNGAG00000023165	ENSNGAG00000005506 #26
Lesser Egyptian jerboa	MODERN SPECIES	50	ENSJJAG00000015577	ENSJJAG00000015492	Frmd3 (ENSJJAG00000019673)	Rasef (ENSJJAG00000023215)	ENSJJAG00000006657	ENSJJAG00000018428	ENSJJAG00000004662	Tle1 (ENSJJAG00000017288) #10	Tle4 (ENSJJAG00000014624) #13	ENSJJAG00000008651	ENSJJAG00000007961	Psat1 (ENSJJAG00000009742) #16	Cep78 (ENSJJAG00000010603) #17	Cyp2c70 (ENSJJAG00000004077)	ENSJJAG00000014142 #19	Gna14 (ENSJJAG00000021762) #22	ENSJJAG00000022956	Vps13a (ENSJJAG00000020332) #23	Foxb2 (ENSJJAG00000010748) #24	ENSJJAG00000000298 #26	ENSJJAG00000011068 #26	Gcnt1 (ENSJJAG00000007751) #27	ENSJJAG00000023775 #28	ENSJJAG00000017893 #29	ENSJJAG00000017021	ENSJJAG00000007517 #30	Nmrk1 (ENSJJAG00000016607) #31	ENSJJAG00000018227	Carnmt1 (ENSJJAG00000013720) #32	Trpm6 (ENSJJAG00000015158) #34	Rorb (ENSJJAG00000013056) #35
Kangaroo rat	MODERN SPECIES	359							Prxl2c (ENSDORG00000001634)	Cdc14b (ENSDORG00000005998)	Rasef (ENSDORG00000015570)	ENSDORG00000026939 #10	ENSDORG00000025974 #10	ENSDORG00000026113 #10	Tle4 (ENSDORG00000008552) #13	Psat1 (ENSDORG00000016698) #16	ENSDORG00000013680 #19	Gna14 (ENSDORG00000028684) #22	Vps13a (ENSDORG00000014372) #23	ENSDORG00000016172 #26	ENSDORG00000028786 #26	Gcnt1 (ENSDORG00000024110) #27	Rfk (ENSDORG00000028987) #28	ENSDORG00000004033 #29	ENSDORG00000002933 #30	Nmrk1 (ENSDORG00000002934) #31	Carnmt1 (ENSDORG00000002935) #32	Rorb (ENSDORG00000008602) #35	Anxa1 (ENSDORG00000011861) #36	ENSDORG00000007344 #37	Tmc1 (ENSDORG00000011879)	Zfand5 (ENSDORG00000024820)	Gda (ENSDORG00000007276)
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Eulipotyphla	ANCESTRAL SPECIES	1430																ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23
Hedgehog	MODERN SPECIES	8271																GNA14 (ENSEEUG00000004720) #22	VPS13A (ENSEEUG00000004402) #23
Common shrew	MODERN SPECIES	3881																GNA14 (ENSSARG00000011280) #22
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000159834	ENSGT01030000234614.A	ENSGT00910000144278	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.a ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT01100000265124	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Suina	ANCESTRAL SPECIES	23	ENSGT01030000234614.A	ENSGT00910000144278	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.a ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00940000164433	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT01100000265124	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Chacoan peccary	MODERN SPECIES	19											TLE4 (ENSCWAG00000019130) #13	PSAT1 (ENSCWAG00000019225) #16	CEP78 (ENSCWAG00000019324) #17	GNAQ (ENSCWAG00000020026) #19	ENSCWAG00000020048	GNA14 (ENSCWAG00000020058) #22	VPS13A (ENSCWAG00000006755) #23	FOXB2 (ENSCWAG00000009905) #24	PRUNE2 (ENSCWAG00000009958) #26	GCNT1 (ENSCWAG00000010174) #27	RFK (ENSCWAG00000010183) #28	PCSK5 (ENSCWAG00000010242) #29	OSTF1 (ENSCWAG00000010320) #30	NMRK1 (ENSCWAG00000010385) #31	CARNMT1 (ENSCWAG00000010423) #32	C9orf40 (ENSCWAG00000010507) #33	TRPM6 (ENSCWAG00000010622) #34	RORB (ENSCWAG00000011984) #35	ANXA1 (ENSCWAG00000012214) #36	ALDH1A1 (ENSCWAG00000012260) #37	TMC1 (ENSCWAG00000012501)
Pig	MODERN SPECIES		C9orf131 (ENSSSCG00000005298)	DNAJB5 (ENSSSCG00000005297)	PHF24 (ENSSSCG00000005296)	ENSSSCG00000059160 ##9	ENSSSCG00000022044 ##9	ENSSSCG00000058846	ENSSSCG00000037497 ##9	ENSSSCG00000033805 ##9	TLE1 (ENSSSCG00000005291) #10	ENSSSCG00000043640	TLE4 (ENSSSCG00000005288) #13	PSAT1 (ENSSSCG00000005287) #16	CEP78 (ENSSSCG00000005286) #17	GNAQ (ENSSSCG00000033763) #19	ENSSSCG00000050902	GNA14 (ENSSSCG00000005284) #22	VPS13A (ENSSSCG00000005282) #23	ENSSSCG00000005279 #24	ENSSSCG00000060679 #26	ENSSSCG00000039009 #26	GCNT1 (ENSSSCG00000005277) #27	RFK (ENSSSCG00000037277) #28	ENSSSCG00000057774	PCSK5 (ENSSSCG00000023520) #29	ENSSSCG00000045514	OSTF1 (ENSSSCG00000005273) #30	NMRK1 (ENSSSCG00000005272) #31	CARNMT1 (ENSSSCG00000005271) #32	C9orf40 (ENSSSCG00000031382) #33	TRPM6 (ENSSSCG00000005269) #34	RORB (ENSSSCG00000005268) #35
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000159834	ENSGT01030000234614.A	ENSGT00910000144278	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.b.a.a.a.a.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT01100000265124	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Camelidae	ANCESTRAL SPECIES	5	ENSGT00940000159834	ENSGT01030000234614.A	ENSGT00910000144278	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.a ##9	ENSGT00950000183043.b.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970.fb #24	ENSGT00940000161970.gb #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609.o #37
Arabian camel	MODERN SPECIES	30	VCP (ENSCDRG00005008294)	ENSCDRG00005008506	ENSCDRG00005008542	DNAJB5 (ENSCDRG00005008554)	PHF24 (ENSCDRG00005008694)	ENSCDRG00005008755 ##9	ENSCDRG00005008891 ##9	ENSCDRG00005008937	ENSCDRG00005009023 ##9	ENSCDRG00005009152	TLE1 (ENSCDRG00005009223) #10	TLE4 (ENSCDRG00005009729) #13	PSAT1 (ENSCDRG00005010295) #16	CEP78 (ENSCDRG00005010412) #17	GNAQ (ENSCDRG00005010714) #19	GNA14 (ENSCDRG00005010802) #22	VPS13A (ENSCDRG00005010963) #23	ENSCDRG00005012146 #24	ENSCDRG00005012196 #24	PRUNE2 (ENSCDRG00005012296) #26	GCNT1 (ENSCDRG00005000054) #27	ENSCDRG00005000058	RFK (ENSCDRG00005000073) #28	PCSK5 (ENSCDRG00005000104) #29	OSTF1 (ENSCDRG00005000204) #30	NMRK1 (ENSCDRG00005000237) #31	CARNMT1 (ENSCDRG00005000294) #32	C9orf40 (ENSCDRG00005000313) #33	TRPM6 (ENSCDRG00005000352) #34	RORB (ENSCDRG00005000469) #35	ANXA1 (ENSCDRG00005000515) #36
Alpaca	MODERN SPECIES	2498															GNAQ (ENSVPAG00000002660) #19	ENSVPAG00000002658 #22	VPS13A (ENSVPAG00000002653) #23	ENSVPAG00000002649 #24	ENSVPAG00000002647 #26	ENSVPAG00000002644 #26	GCNT1 (ENSVPAG00000002643) #27
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000159834	ENSGT01030000234614.A	ENSGT00910000144278	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.b.a.a.a.a.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT01100000265124	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Pecora	ANCESTRAL SPECIES	30	ENSGT00940000159834	ENSGT01030000234614.A	ENSGT00910000144278	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.b.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT01100000265124	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Percora_a	ANCESTRAL SPECIES	24	ENSGT00940000154929.A	ENSGT00940000159834	ENSGT01030000234614.A	ENSGT00910000144278	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.b.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Bovidae	ANCESTRAL SPECIES	14	ENSGT00910000144278	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.a ##9	ENSGT00950000183043.b.b.g.a ##9	ENSGT00950000183043.a.b.b.a.a.a.a.a.a ##9	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Bovinae	ANCESTRAL SPECIES	14	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.a ##9	ENSGT00950000183043.b.b.g.a ##9	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00510000046986.x.b.b.c	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153786.f	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221.l #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Bos	ANCESTRAL SPECIES	10	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.a ##9	ENSGT00950000183043.b.b.g.a ##9	ENSGT00940000156705.q.a	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00510000046986.x.b.b.c	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153786.f	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.b.a.a.b.a	ENSGT00940000157708 #35	ENSGT00960000191550	ENSGT00940000155221.l #36
Bos_a	ANCESTRAL SPECIES	30	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.b.b ##9	ENSGT00950000183043.b.b.g.a ##9	ENSGT00940000156705.q.a	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00510000046986.x.b.b.c	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153786.f	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.b.a.a.b.a	ENSGT00940000157708 #35	ENSGT00960000191550	ENSGT00940000155221.l #36	ENSGT00950000183037.A.b
Wild yak	MODERN SPECIES	527													PSAT1 (ENSBMUG00000017264) #16	CEP78 (ENSBMUG00000017026) #17	GNAQ (ENSBMUG00000016719) #19	GNA14 (ENSBMUG00000016710) #22	VPS13A (ENSBMUG00000016513) #23	ENSBMUG00000016024 #24	ENSBMUG00000016005	ENSBMUG00000015977 #26	ENSBMUG00000015952 #26	GCNT1 (ENSBMUG00000015908) #27	RFK (ENSBMUG00000015895) #28	ENSBMUG00000015883	PCSK5 (ENSBMUG00000015866) #29	ENSBMUG00000015810
Domestic yak	MODERN SPECIES	26	ENSBGRG00000013622	ENSBGRG00000013635	DNAJB5 (ENSBGRG00000013654)	PHF24 (ENSBGRG00000013768)	ENSBGRG00000013818 ##9	ENSBGRG00000013886 ##9	ENSBGRG00000013935	ENSBGRG00000013989 ##9	TLE1 (ENSBGRG00000014025) #10	ENSBGRG00000014478	TLE4 (ENSBGRG00000014515) #13	ENSBGRG00000015298	PSAT1 (ENSBGRG00000015370) #16	CEP78 (ENSBGRG00000015625) #17	GNAQ (ENSBGRG00000018521) #19	GNA14 (ENSBGRG00000018676) #22	ENSBGRG00000018726	VPS13A (ENSBGRG00000018767) #23	FOXB2 (ENSBGRG00000019072) #24	PRUNE2 (ENSBGRG00000019111) #26	GCNT1 (ENSBGRG00000019923) #27	RFK (ENSBGRG00000019943) #28	PCSK5 (ENSBGRG00000020040) #29	ENSBGRG00000020946	OSTF1 (ENSBGRG00000020958) #30	NMRK1 (ENSBGRG00000021061) #31	CARNMT1 (ENSBGRG00000021200) #32	ENSBGRG00000021340	ENSBGRG00000021355	ENSBGRG00000021369	TRPM6 (ENSBGRG00000021396) #34
Bos_b	ANCESTRAL SPECIES	3	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.a ##9	ENSGT00950000183043.b.b.g.a ##9	ENSGT00940000156705.q.a	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00510000046986.x.b.b.c	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153786.f	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.b.a.a.b.a	ENSGT00940000157708 #35	ENSGT00960000191550	ENSGT00940000155221.l #36
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005006605	ENSBIXG00005010808	DNAJB5 (ENSBIXG00005010876)	PHF24 (ENSBIXG00005010904)	ENSBIXG00005010937 ##9	ENSBIXG00005010942 ##9	ENSBIXG00005011007 ##9	TLE1 (ENSBIXG00005011126) #10	ENSBIXG00005011164	TLE4 (ENSBIXG00005011277) #13	PSAT1 (ENSBIXG00005011341) #16	ENSBIXG00005011364	CEP78 (ENSBIXG00005006208) #17	GNAQ (ENSBIXG00005011522) #19	ENSBIXG00005011557	GNA14 (ENSBIXG00005011575) #22	VPS13A (ENSBIXG00005006324) #23	FOXB2 (ENSBIXG00005011723) #24	PRUNE2 (ENSBIXG00005007526) #26	GCNT1 (ENSBIXG00005012101) #27	ENSBIXG00005012140 #28	ENSBIXG00005012159	PCSK5 (ENSBIXG00005012986) #29	OSTF1 (ENSBIXG00005013151) #30	NMRK1 (ENSBIXG00005013188) #31	CARNMT1 (ENSBIXG00005013231) #32	TRPM6 (ENSBIXG00005014056) #34	ENSBIXG00005014163	RORB (ENSBIXG00005006505) #35	ENSBIXG00005014214	ENSBIXG00005014241 #36
Cow	MODERN SPECIES	27	VCP (ENSBTAG00000015000)	C8H9orf131 (ENSBTAG00000051343)	DNAJB5 (ENSBTAG00000018318)	PHF24 (ENSBTAG00000012809)	FAM205C (ENSBTAG00000017338) ##9	ENSBTAG00000049991 ##9	ENSBTAG00000050015	ENSBTAG00000005667 ##9	TLE1 (ENSBTAG00000000256) #10	ENSBTAG00000006294	TLE4 (ENSBTAG00000003532) #13	ENSBTAG00000024233	PSAT1 (ENSBTAG00000013960) #16	CEP78 (ENSBTAG00000020752) #17	GNAQ (ENSBTAG00000009789) #19	GNA14 (ENSBTAG00000021127) #22	ENSBTAG00000017734 #23	ENSBTAG00000051821 #23	FOXB2 (ENSBTAG00000032983) #24	ENSBTAG00000048354 #26	PRUNE2 (ENSBTAG00000012991) #26	ENSBTAG00000053347 #26	GCNT1 (ENSBTAG00000012757) #27	RFK (ENSBTAG00000019345) #28	PCSK5 (ENSBTAG00000008101) #29	ENSBTAG00000053085	OSTF1 (ENSBTAG00000002746) #30	NMRK1 (ENSBTAG00000019687) #31	CARNMT1 (ENSBTAG00000008204) #32	C8H9orf40 (ENSBTAG00000013231) #33	ENSBTAG00000051504 #34
American bison	MODERN SPECIES	3212								ENSBBBG00000013680	TLE1 (ENSBBBG00000008115) #10	ENSBBBG00000002908	TLE4 (ENSBBBG00000013848) #13	ENSBBBG00000013872	PSAT1 (ENSBBBG00000013891) #16	CEP78 (ENSBBBG00000006946) #17	GNAQ (ENSBBBG00000001428) #19	GNA14 (ENSBBBG00000014272) #22	ENSBBBG00000003245 #23
Caprinae	ANCESTRAL SPECIES	14	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.a ##9	ENSGT00950000183043.b.b.g.a ##9	ENSGT00950000183043.a.b.b.a.a.a.a.a.a ##9	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00730000111116.j	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Goat	MODERN SPECIES	27	VCP (ENSCHIG00000018325)	DNAJB5 (ENSCHIG00000003729)	PHF24 (ENSCHIG00000018664)	ENSCHIG00000005785 ##9	ENSCHIG00000018064 ##9	ENSCHIG00000026697 ##9	ENSCHIG00000018732 ##9	ENSCHIG00000000627 ##9	TLE1 (ENSCHIG00000019014) #10	ENSCHIG00000010112	TLE4 (ENSCHIG00000019651) #13	PSAT1 (ENSCHIG00000023475) #16	CEP78 (ENSCHIG00000016639) #17	ENSCHIG00000023442	GNAQ (ENSCHIG00000011392) #19	GNA14 (ENSCHIG00000021016) #22	VPS13A (ENSCHIG00000020594) #23	FOXB2 (ENSCHIG00000004613) #24	ENSCHIG00000009127 #26	ENSCHIG00000025880 #26	GCNT1 (ENSCHIG00000011189) #27	RFK (ENSCHIG00000023491) #28	PCSK5 (ENSCHIG00000004522) #29	OSTF1 (ENSCHIG00000012972) #30	NMRK1 (ENSCHIG00000014343) #31	CARNMT1 (ENSCHIG00000024458) #32	C9orf40 (ENSCHIG00000012544) #33	TRPM6 (ENSCHIG00000019917) #34	RORB (ENSCHIG00000025702) #35	ENSCHIG00000012586	ANXA1 (ENSCHIG00000020923) #36
Siberian musk deer	MODERN SPECIES	29	VCP (ENSMMSG00000013911)	C9orf131 (ENSMMSG00000013953)	DNAJB5 (ENSMMSG00000014036)	PHF24 (ENSMMSG00000014079)	ENSMMSG00000014101 ##9	ENSMMSG00000014127 ##9	ENSMMSG00000014140	ENSMMSG00000014150	TLE1 (ENSMMSG00000014201) #10	ENSMMSG00000014332	TLE4 (ENSMMSG00000014344) #13	PSAT1 (ENSMMSG00000014424) #16	CEP78 (ENSMMSG00000014473) #17	ENSMMSG00000014588	ENSMMSG00000014599	GNA14 (ENSMMSG00000014616) #22	VPS13A (ENSMMSG00000014654) #23	FOXB2 (ENSMMSG00000014816) #24	PRUNE2 (ENSMMSG00000014836) #26	ENSMMSG00000014983	GCNT1 (ENSMMSG00000014991) #27	RFK (ENSMMSG00000015003) #28
Yarkand deer	MODERN SPECIES	21	VCP (ENSCHYG00000026503)	ENSCHYG00000026490	ENSCHYG00000026476	ENSCHYG00000026469	DNAJB5 (ENSCHYG00000026463)	PHF24 (ENSCHYG00000026447)	ENSCHYG00000026436 ##9	ENSCHYG00000026428 ##9	ENSCHYG00000026421	TLE1 (ENSCHYG00000026374) #10	TLE4 (ENSCHYG00000026147) #13	PSAT1 (ENSCHYG00000026067) #16	CEP78 (ENSCHYG00000025990) #17	GNAQ (ENSCHYG00000025937) #19	ENSCHYG00000025920	GNA14 (ENSCHYG00000025896) #22	ENSCHYG00000025887	VPS13A (ENSCHYG00000025803) #23	FOXB2 (ENSCHYG00000025745) #24	PRUNE2 (ENSCHYG00000025376) #26	ENSCHYG00000025314	ENSCHYG00000025302	ENSCHYG00000025284 #28	PCSK5 (ENSCHYG00000024685) #29	ENSCHYG00000024600	ENSCHYG00000024591	OSTF1 (ENSCHYG00000024488) #30	ENSCHYG00000024377 #31	CARNMT1 (ENSCHYG00000024319) #32	C9orf40 (ENSCHYG00000024308) #33	TRPM6 (ENSCHYG00000024016) #34
Cetacea	ANCESTRAL SPECIES	9	ENSGT00910000144278	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.b.a.a.a.a.a.b ##9	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000162764.A.a.b	ENSGT00940000153241.A #16	ENSGT00390000013287.t #17	ENSGT00940000161347 #19	ENSGT00390000005589.a.b.k.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.v.a.a #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00910000148416	ENSGT00390000005323 #32	ENSGT00390000001325.a #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b
Blue whale	MODERN SPECIES	17	ENSBMSG00010004636	ENSBMSG00010004629	DNAJB5 (ENSBMSG00010004603)	PHF24 (ENSBMSG00010004582)	ENSBMSG00010004559 ##9	ENSBMSG00010004542 ##9	ENSBMSG00010004490	TLE1 (ENSBMSG00010004448) #10	ENSBMSG00010004414	TLE4 (ENSBMSG00010004237) #13	ENSBMSG00010004201	PSAT1 (ENSBMSG00010004175) #16	ENSBMSG00010004135 #17	GNAQ (ENSBMSG00010004092) #19	ENSBMSG00010004083	GNA14 (ENSBMSG00010004068) #22	ENSBMSG00010004060 ##8	VPS13A (ENSBMSG00010003835) #23	FOXB2 (ENSBMSG00010003713) #24	ENSBMSG00010003588 #26	GCNT1 (ENSBMSG00010003536) #27	ENSBMSG00010003531 #28	PCSK5 (ENSBMSG00010003436) #29	ENSBMSG00010003413 #30	NMRK1 (ENSBMSG00010003405) #31	ENSBMSG00010003397	CARNMT1 (ENSBMSG00010003386) #32	C9orf40 (ENSBMSG00010003380) #33	TRPM6 (ENSBMSG00010003340) #34	RORB (ENSBMSG00010003300) #35	ENSBMSG00010003286
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.b.a.a.a.a.a.b ##9	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00390000017385.n	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000162764.A.a.b.b	ENSGT00940000153241.A #16	ENSGT00390000013287.t #17	ENSGT00940000161347 #19	ENSGT00390000005589.a.b.k.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.v.a.a #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00910000148416	ENSGT00390000005323 #32	ENSGT00390000001325.a #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b
Sperm whale	MODERN SPECIES	20	FANCG (ENSPCTG00005000387)	VCP (ENSPCTG00005000426)	C9orf131 (ENSPCTG00005000462)	DNAJB5 (ENSPCTG00005000482)	ENSPCTG00005000497	PHF24 (ENSPCTG00005000516)	TLE1 (ENSPCTG00005000556) #10	ENSPCTG00005000593	TLE4 (ENSPCTG00005000639) #13	ENSPCTG00005000680	PSAT1 (ENSPCTG00005000704) #16	ENSPCTG00005000736 #17	ENSPCTG00005000743 #17	GNAQ (ENSPCTG00005000756) #19	ENSPCTG00005000769	GNA14 (ENSPCTG00005000786) #22	VPS13A (ENSPCTG00005000866) #23	ENSPCTG00005000922 ##20	FOXB2 (ENSPCTG00005000930) #24	PRUNE2 (ENSPCTG00005000981) #26	GCNT1 (ENSPCTG00005001079) #27	ENSPCTG00005001091	RFK (ENSPCTG00005001107) #28	PCSK5 (ENSPCTG00005001143) #29	OSTF1 (ENSPCTG00005001197) #30	NMRK1 (ENSPCTG00005001209) #31	ENSPCTG00005001226	CARNMT1 (ENSPCTG00005001249) #32	C9H9orf40 (ENSPCTG00005001272) #33	TRPM6 (ENSPCTG00005001419) #34	RORB (ENSPCTG00005001849) #35
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00390000007195	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.a ##9	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00390000017385.n	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000162764.A.a.b.b	ENSGT00940000153241.A.e #16	ENSGT00390000013287.t #17	ENSGT00940000161347 #19	ENSGT00390000005589.a.b.k.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.v.a.a #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325.a #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Dolphin	MODERN SPECIES	2753																GNA14 (ENSTTRG00000011603) #22	VPS13A (ENSTTRG00000011573) #23	FOXB2 (ENSTTRG00000011568) #24
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.b.a.a.a.a.a.b ##9	ENSGT00950000183043.b.b.g.a ##9	ENSGT00390000017004.a.a.l	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00390000017385.n	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000162764.A.a.b.b	ENSGT00940000153241.A.e #16	ENSGT00390000013287.t #17	ENSGT00940000161347 #19	ENSGT00390000005589.a.b.k.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.v.a.a #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325.a #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Vaquita	MODERN SPECIES	17	ENSPSNG00000019306	ENSPSNG00000019344	DNAJB5 (ENSPSNG00000019366)	PHF24 (ENSPSNG00000019479)	ENSPSNG00000019507 ##9	ENSPSNG00000019554	ENSPSNG00000019585 ##9	ENSPSNG00000019680 ##9	ENSPSNG00000019722	TLE1 (ENSPSNG00000019950) #10	TLE4 (ENSPSNG00000020039) #13	ENSPSNG00000020147	PSAT1 (ENSPSNG00000020230) #16	ENSPSNG00000020316 #17	GNAQ (ENSPSNG00000020419) #19	GNA14 (ENSPSNG00000020441) #22	VPS13A (ENSPSNG00000020544) #23	ENSPSNG00000020679	ENSPSNG00000020710 #20	FOXB2 (ENSPSNG00000020723) #24	ENSPSNG00000020742 #26	GCNT1 (ENSPSNG00000020765) #27	ENSPSNG00000020791 #28	PCSK5 (ENSPSNG00000020871) #29	ENSPSNG00000020965 #30	NMRK1 (ENSPSNG00000021002) #31	CARNMT1 (ENSPSNG00000021060) #32	C9orf40 (ENSPSNG00000021139) #33	TRPM6 (ENSPSNG00000021209) #34	ENSPSNG00000021377	RORB (ENSPSNG00000021397) #35
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00900000141071	ENSGT00390000000748	ENSGT00940000156090.a	ENSGT00390000002865	ENSGT00950000183043.a.b.b.a.a.a.a.a.b ##9	ENSGT00950000183043.b.b.g.a ##9	ENSGT00390000017004.a.a.l	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00390000017385.n	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000162764.A.a.b.b	ENSGT00940000153241.A.e #16	ENSGT00390000013287.t #17	ENSGT00940000161347 #19	ENSGT00390000005589.a.b.k.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.v.a.a #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325.a #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Narwhal	MODERN SPECIES	312	ENSMMNG00015016439 ##9	ENSMMNG00015016418	ENSMMNG00015016384 ##9	ENSMMNG00015016311	ENSMMNG00015016295 #9	TLE1 (ENSMMNG00015016128) #10	ENSMMNG00015016069	ENSMMNG00015016037	ENSMMNG00015015982	TLE4 (ENSMMNG00015015825) #13	ENSMMNG00015015725	PSAT1 (ENSMMNG00015015696) #16	ENSMMNG00015015512 #17	GNAQ (ENSMMNG00015015412) #19	ENSMMNG00015015399	GNA14 (ENSMMNG00015015382) #22	ENSMMNG00015015370	VPS13A (ENSMMNG00015015293) #23	FOXB2 (ENSMMNG00015015204) #24	ENSMMNG00015015183 #26	ENSMMNG00015015151 #26	ENSMMNG00015015130 #28	PCSK5 (ENSMMNG00015014930) #29	ENSMMNG00015014836 #30	NMRK1 (ENSMMNG00015014803) #31	CARNMT1 (ENSMMNG00015014708) #32	ENSMMNG00015014689 #33	TRPM6 (ENSMMNG00015014567) #34	RORB (ENSMMNG00015014483) #35	ANXA1 (ENSMMNG00015014451) #36	ALDH1A1 (ENSMMNG00015014430) #37
Beluga whale	MODERN SPECIES	50	VCP (ENSDLEG00000021246)	ENSDLEG00000021251	DNAJB5 (ENSDLEG00000021254)	PHF24 (ENSDLEG00000021258)	ENSDLEG00000021261 ##9	ENSDLEG00000021264	ENSDLEG00000021267 ##9	ENSDLEG00000021271	TLE1 (ENSDLEG00000021275) #10	ENSDLEG00000021281	TLE4 (ENSDLEG00000021283) #13	ENSDLEG00000021285	ENSDLEG00000021289 #16	ENSDLEG00000021309 #17	GNAQ (ENSDLEG00000021362) #19	ENSDLEG00000021366 #22	VPS13A (ENSDLEG00000021392) #23	ENSDLEG00000008006	FOXB2 (ENSDLEG00000008017) #24	PRUNE2 (ENSDLEG00000008030) #26	GCNT1 (ENSDLEG00000008169) #27	RFK (ENSDLEG00000008189) #28	PCSK5 (ENSDLEG00000008227) #29	ENSDLEG00000008342 #30	NMRK1 (ENSDLEG00000008464) #31	CARNMT1 (ENSDLEG00000008504) #32	CUNH9orf40 (ENSDLEG00000008530) #33	TRPM6 (ENSDLEG00000008592) #34	RORB (ENSDLEG00000008845) #35	ANXA1 (ENSDLEG00000008888) #36	ALDH1A1 (ENSDLEG00000008942) #37
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Carnivora	ANCESTRAL SPECIES	25	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Caniformia	ANCESTRAL SPECIES	29	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Caniformia_b	ANCESTRAL SPECIES	32	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Ursidae	ANCESTRAL SPECIES	43	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b.l #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221.r #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Ursus	ANCESTRAL SPECIES	280											ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b.k #23
American black bear	MODERN SPECIES	5259																ENSUAMG00000020040 #22	ENSUAMG00000020043 #23
Polar bear	MODERN SPECIES	171										TLE1 (ENSUMAG00000023213) #10	ENSUMAG00000023163	TLE4 (ENSUMAG00000023158) #13	PSAT1 (ENSUMAG00000023147) #16	CEP78 (ENSUMAG00000023079) #17	GNAQ (ENSUMAG00000023048) #19	GNA14 (ENSUMAG00000023042) #22	ENSUMAG00000023039	VPS13A (ENSUMAG00000022379) #23	ENSUMAG00000022179 #26	ENSUMAG00000022172 #26	GCNT1 (ENSUMAG00000022168) #27	RFK (ENSUMAG00000022167) #28	ENSUMAG00000022155 #29	OSTF1 (ENSUMAG00000022148) #30	ENSUMAG00000022147 #31	CARNMT1 (ENSUMAG00000022143) #32	TRPM6 (ENSUMAG00000022132) #34	RORB (ENSUMAG00000022082) #35	ANXA1 (ENSUMAG00000022067) #36	ENSUMAG00000022048 #37	ENSUMAG00000021983 #37
Giant Panda	MODERN SPECIES	8	NTRK2 (ENSAMEG00000003994)	SLC28A3 (ENSAMEG00000003963)	RMI1 (ENSAMEG00000019422)	HNRNPK (ENSAMEG00000003926)	C9orf64 (ENSAMEG00000003917)	KIF27 (ENSAMEG00000003891)	GKAP1 (ENSAMEG00000003861)	UBQLN1 (ENSAMEG00000003825)	IDNK (ENSAMEG00000003818)	FRMD3 (ENSAMEG00000003807)	RASEF (ENSAMEG00000009467)	TLE1 (ENSAMEG00000014488) #10	TLE4 (ENSAMEG00000008536) #13	PSAT1 (ENSAMEG00000006898) #16	GNAQ (ENSAMEG00000005271) #19	GNA14 (ENSAMEG00000005279) #22	VPS13A (ENSAMEG00000005296) #23	ENSAMEG00000023684 #24	PRUNE2 (ENSAMEG00000003568) #26	GCNT1 (ENSAMEG00000019017) #27	RFK (ENSAMEG00000003553) #28	PCSK5 (ENSAMEG00000003447) #29	OSTF1 (ENSAMEG00000005324) #30	NMRK1 (ENSAMEG00000005312) #31	CARNMT1 (ENSAMEG00000005299) #32	C9orf40 (ENSAMEG00000019087) #33	TRPM6 (ENSAMEG00000015683) #34	RORB (ENSAMEG00000015664) #35	ANXA1 (ENSAMEG00000015540) #36	ENSAMEG00000025347 #37	TMC1 (ENSAMEG00000007299)
Mustelinae	ANCESTRAL SPECIES	87												ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Ferret	MODERN SPECIES	332										ENSMPUG00000012594	TLE4 (ENSMPUG00000012590) #13	ENSMPUG00000012588	PSAT1 (ENSMPUG00000012566) #16	CEP78 (ENSMPUG00000012559) #17	GNAQ (ENSMPUG00000012554) #19	GNA14 (ENSMPUG00000012547) #22	VPS13A (ENSMPUG00000012524) #23	FOXB2 (ENSMPUG00000012521) #24	PRUNE2 (ENSMPUG00000012517) #26	GCNT1 (ENSMPUG00000018578) #27	RFK (ENSMPUG00000012511) #28	PCSK5 (ENSMPUG00000012343) #29	ENSMPUG00000018576	OSTF1 (ENSMPUG00000012340) #30	NMRK1 (ENSMPUG00000012337) #31	CARNMT1 (ENSMPUG00000012334) #32
American mink	MODERN SPECIES	72										ENSNVIG00000014390	TLE4 (ENSNVIG00000014309) #13	PSAT1 (ENSNVIG00000014279) #16	CEP78 (ENSNVIG00000013964) #17	GNAQ (ENSNVIG00000013949) #19	ENSNVIG00000013946	GNA14 (ENSNVIG00000013931) #22	VPS13A (ENSNVIG00000012690) #23	FOXB2 (ENSNVIG00000012653) #24	PRUNE2 (ENSNVIG00000012503) #26	GCNT1 (ENSNVIG00000012487) #27	RIFK (ENSNVIG00000012475) #28	PCSK5 (ENSNVIG00000012403) #29	OSTF1 (ENSNVIG00000012393) #30	NMRK1 (ENSNVIG00000012371) #31	CARNMT1 (ENSNVIG00000012354) #32	C9orf40 (ENSNVIG00000012345) #33	TRPM6 (ENSNVIG00000011669) #34	RORB (ENSNVIG00000011617) #35	ENSNVIG00000011556 #36	ALDH1A1 (ENSNVIG00000011532) #37	TMC1 (ENSNVIG00000011459)
Canidae	ANCESTRAL SPECIES	47	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00940000164433	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.g #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000153305.d.cb.a.b	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000157487.ib	ENSGT01100000263605.i.a	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00950000182805.a.a.a.b.j.k.a	ENSGT00940000164433	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A.g #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000153305.d.cb.a.b	ENSGT00940000155221 #36	ENSGT00940000154609 #37
Dog	MODERN SPECIES		GKAP1 (ENSCAFG00845006032)	UBQLN1 (ENSCAFG00845006162)	IDNK (ENSCAFG00845006259)	FRMD3 (ENSCAFG00845006384)	RASEF (ENSCAFG00845006700)	ENSCAFG00845006862 ##9	TLE1 (ENSCAFG00845007046) #10	ENSCAFG00845007319	ENSCAFG00845007343	ENSCAFG00845007360	ENSCAFG00845007380	TLE4 (ENSCAFG00845007658) #13	PSAT1 (ENSCAFG00845008158) #16	CEP78 (ENSCAFG00845008575) #17	GNAQ (ENSCAFG00845009564) #19	GNA14 (ENSCAFG00845009597) #22	VPS13A (ENSCAFG00845009740) #23	FOXB2 (ENSCAFG00845010290) #24	PRUNE2 (ENSCAFG00845010363) #26	GCNT1 (ENSCAFG00845010790) #27	RFK (ENSCAFG00845010840) #28	PCSK5 (ENSCAFG00845010995) #29	ENSCAFG00845011478	ENSCAFG00845011513 #30	ENSCAFG00845011554 #30	NMRK1 (ENSCAFG00845011585) #31	CARNMT1 (ENSCAFG00845011707) #32	C1H9orf40 (ENSCAFG00845011724) #33	TRPM6 (ENSCAFG00845011822) #34	RORB (ENSCAFG00845012330) #35	ENSCAFG00845012398
Dingo	MODERN SPECIES	125	IDNK (ENSCAFG00020023839)	FRMD3 (ENSCAFG00020023845)	RASEF (ENSCAFG00020023859)	ENSCAFG00020023896	ENSCAFG00020023897	ENSCAFG00020023899 ##9	TLE1 (ENSCAFG00020023903) #10	ENSCAFG00020023907	ENSCAFG00020023908	ENSCAFG00020023910	ENSCAFG00020023912	TLE4 (ENSCAFG00020023935) #13	ENSCAFG00020024577 #16	CEP78 (ENSCAFG00020024607) #17	GNAQ (ENSCAFG00020024672) #19	GNA14 (ENSCAFG00020024695) #22	ENSCAFG00020024709 #23	ENSCAFG00020024713 #23	ENSCAFG00020024717 #24	ENSCAFG00020024719	ENSCAFG00020024730 #26	ENSCAFG00020024732 #26	GCNT1 (ENSCAFG00020024738) #27	RFK (ENSCAFG00020024745) #28	PCSK5 (ENSCAFG00020024848) #29	ENSCAFG00020025484	ENSCAFG00020025485	ENSCAFG00020025486	OSTF1 (ENSCAFG00020025488) #30	NMRK1 (ENSCAFG00020025490) #31	ENSCAFG00020025491 #32
Red fox	MODERN SPECIES	37										ENSVVUG00000001369	ENSVVUG00000001377	TLE4 (ENSVVUG00000001430) #13	ENSVVUG00000001473 #16	CEP78 (ENSVVUG00000001495) #17	GNAQ (ENSVVUG00000001540) #19	GNA14 (ENSVVUG00000001563) #22	VPS13A (ENSVVUG00000001749) #23	ENSVVUG00000001950 #23	ENSVVUG00000001964 #24	ENSVVUG00000001998 #26	PRUNE2 (ENSVVUG00000002061) #26	RFK (ENSVVUG00000002092) #28	PCSK5 (ENSVVUG00000002152) #29	OSTF1 (ENSVVUG00000002259) #30	NMRK1 (ENSVVUG00000002291) #31	ENSVVUG00000002307	CARNMT1 (ENSVVUG00000002327) #32	ENSVVUG00000002351	TRPM6 (ENSVVUG00000002363) #34	RORB (ENSVVUG00000002470) #35	ENSVVUG00000003173
Felidae	ANCESTRAL SPECIES	28	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00390000018085.a.b.b	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Panthera	ANCESTRAL SPECIES	34	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00390000018085.a.b.b	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Panthera_a	ANCESTRAL SPECIES	35	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00390000018085.a.b.b	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000157455.b.b.b	ENSGT00940000154609 #37
lion	MODERN SPECIES	13	RMI1 (ENSPLOG00000013722)	HNRNPK (ENSPLOG00000013759)	C9orf64 (ENSPLOG00000013829)	KIF27 (ENSPLOG00000013951)	GKAP1 (ENSPLOG00000014120)	UBQLN1 (ENSPLOG00000014300)	IDNK (ENSPLOG00000014593)	FRMD3 (ENSPLOG00000014784)	RASEF (ENSPLOG00000005557)	TLE1 (ENSPLOG00000005932) #10	TLE4 (ENSPLOG00000006108) #13	ENSPLOG00000006291	PSAT1 (ENSPLOG00000006318) #16	CEP78 (ENSPLOG00000006418) #17	GNAQ (ENSPLOG00000006541) #19	GNA14 (ENSPLOG00000006582) #22	VPS13A (ENSPLOG00000006980) #23	FOXB2 (ENSPLOG00000008702) #24	PRUNE2 (ENSPLOG00000008778) #26	GCNT1 (ENSPLOG00000009043) #27	RFK (ENSPLOG00000009075) #28	PCSK5 (ENSPLOG00000009159) #29	OSTF1 (ENSPLOG00000009605) #30	NMRK1 (ENSPLOG00000009658) #31	CARNMT1 (ENSPLOG00000009718) #32	C9orf40 (ENSPLOG00000009758) #33	TRPM6 (ENSPLOG00000009865) #34	RORB (ENSPLOG00000010628) #35	ANXA1 (ENSPLOG00000010824) #36	ENSPLOG00000010872	ALDH1A1 (ENSPLOG00000010882) #37
leopard	MODERN SPECIES	42											TLE4 (ENSPPRG00000002657) #13	ENSPPRG00000020842	PSAT1 (ENSPPRG00000000680) #16	CEP78 (ENSPPRG00000022688) #17	GNAQ (ENSPPRG00000023191) #19	GNA14 (ENSPPRG00000023254) #22	ENSPPRG00000023314	VPS13A (ENSPPRG00000023867) #23	ENSPPRG00000019426	ENSPPRG00000018788 #26	ENSPPRG00000018607 #26	GCNT1 (ENSPPRG00000020438) #27	RFK (ENSPPRG00000018334) #28	PCSK5 (ENSPPRG00000015616) #29	OSTF1 (ENSPPRG00000014712) #30	NMRK1 (ENSPPRG00000013152) #31	CARNMT1 (ENSPPRG00000012920) #32	ENSPPRG00000020310	C9orf40 (ENSPPRG00000012911) #33	ENSPPRG00000020296	TRPM6 (ENSPPRG00000012646) #34
Tiger	MODERN SPECIES	101												TLE4 (ENSPTIG00000019084) #13	PSAT1 (ENSPTIG00000018344) #16	CEP78 (ENSPTIG00000015052) #17	GNAQ (ENSPTIG00000013977) #19	GNA14 (ENSPTIG00000013203) #22	VPS13A (ENSPTIG00000019104) #23	ENSPTIG00000018318 #26	ENSPTIG00000005329 #26	ENSPTIG00000017898 #26	RFK (ENSPTIG00000016018) #28	PCSK5 (ENSPTIG00000010972) #29	OSTF1 (ENSPTIG00000009600) #30	NMRK1 (ENSPTIG00000007642) #31	CARNMT1 (ENSPTIG00000007361) #32	TRPM6 (ENSPTIG00000018404) #34	RORB (ENSPTIG00000017145) #35	ANXA1 (ENSPTIG00000016582) #36	ALDH1A1 (ENSPTIG00000015084) #37	TMC1 (ENSPTIG00000012847)	ZFAND5 (ENSPTIG00000012129)
Cat	MODERN SPECIES	244	RMI1 (ENSFCAG00000014864)	HNRNPK (ENSFCAG00000014862)	CD4H9orf64 (ENSFCAG00000035394)	KIF27 (ENSFCAG00000013331)	GKAP1 (ENSFCAG00000031248)	IDNK (ENSFCAG00000000492)	UBQLN1 (ENSFCAG00000015049)	FRMD3 (ENSFCAG00000023456)	RASEF (ENSFCAG00000002416)	TLE1 (ENSFCAG00000003893) #10	TLE4 (ENSFCAG00000002339) #13	ENSFCAG00000031069	PSAT1 (ENSFCAG00000024154) #16	CEP78 (ENSFCAG00000007763) #17	GNAQ (ENSFCAG00000024503) #19	GNA14 (ENSFCAG00000008471) #22	VPS13A (ENSFCAG00000000749) #23	FOXB2 (ENSFCAG00000046576) #24	PRUNE2 (ENSFCAG00000029198) #26	GCNT1 (ENSFCAG00000030141) #27	RFK (ENSFCAG00000039390) #28	PCSK5 (ENSFCAG00000027896) #29	OSTF1 (ENSFCAG00000022374) #30	NMRK1 (ENSFCAG00000035848) #31	CARNMT1 (ENSFCAG00000028436) #32	C9orf40 (ENSFCAG00000030577) #33	TRPM6 (ENSFCAG00000011422) #34	RORB (ENSFCAG00000011421) #35	ANXA1 (ENSFCAG00000015263) #36	ALDH1A1 (ENSFCAG00000009133) #37	TMC1 (ENSFCAG00000043213)
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT00950000183043.a.b.b.a.a.a.a.a.a ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Equus	ANCESTRAL SPECIES	70	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b.i.b.a.b.b.b ##9	ENSGT00950000183043.a.b.b.a.b.i.a.a.a ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00390000015537.x #28	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.w #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32
Donkey	MODERN SPECIES	22	ENSEASG00005009587	ZFAND5 (ENSEASG00005009586)	TMC1 (ENSEASG00005036859)	ALDH1A1 (ENSEASG00005009584) #37	ANXA1 (ENSEASG00005007925) #36	RORB (ENSEASG00005007922) #35	TRPM6 (ENSEASG00005007843) #34	ENSEASG00005007794 #33	ENSEASG00005027501 ##9	ENSEASG00005005051 #10	TLE4 (ENSEASG00005005032) #13	PSAT1 (ENSEASG00005005021) #16	CEP78 (ENSEASG00005005009) #17	ENSEASG00005005001 #28	GNAQ (ENSEASG00005004998) #19	GNA14 (ENSEASG00005004986) #22	VPS13A (ENSEASG00005004923) #23	ENSEASG00005004789 #24	ENSEASG00005034399	PRUNE2 (ENSEASG00005004758) #26	GCNT1 (ENSEASG00005030619) #27	ENSEASG00005004752 #28	PCSK5 (ENSEASG00005004745) #29	OSTF1 (ENSEASG00005004735) #30	ENSEASG00005004722 #31	ENSEASG00005004711 #32	ENSEASG00005033852	ENSEASG00005024562	ENSEASG00005031255	ENSEASG00005035670	ENSEASG00005034160
Horse	MODERN SPECIES	15	ENSECAG00000035038	ENSECAG00000009881	ENSECAG00000034991	ENSECAG00000052440	FRMD3 (ENSECAG00000007878)	ENSECAG00000044353	RASEF (ENSECAG00000000324)	ENSECAG00000018120 ##9	ENSECAG00000035266 ##9	TLE1 (ENSECAG00000013680) #10	TLE4 (ENSECAG00000009982) #13	PSAT1 (ENSECAG00000017903) #16	CEP78 (ENSECAG00000012634) #17	ENSECAG00000028496 #28	GNAQ (ENSECAG00000018363) #19	GNA14 (ENSECAG00000020518) #22	VPS13A (ENSECAG00000020865) #23	ENSECAG00000033811 #24	PRUNE2 (ENSECAG00000010004) #26	GCNT1 (ENSECAG00000020201) #27	ENSECAG00000037215 #28	PCSK5 (ENSECAG00000006788) #29	OSTF1 (ENSECAG00000019624) #30	NMRK1 (ENSECAG00000007336) #31	CARNMT1 (ENSECAG00000013964) #32	ANXA1 (ENSECAG00000015794) #36	ENSECAG00000038056 ##9	ENSECAG00000041820 ##9	RORB (ENSECAG00000024312) #35	TRPM6 (ENSECAG00000015942) #34	ENSECAG00000052040
Chiroptera	ANCESTRAL SPECIES	40	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT00950000183043.a.b.b.a.a.a.a.a.a ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Megabat	MODERN SPECIES	6117																GNA14 (ENSPVAG00000012213) #22
Microchiroptera	ANCESTRAL SPECIES	36	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.ib	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT00950000183043.a.b.b.a.a.a.a.a.a ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Greater horseshoe bat	MODERN SPECIES	3	C9orf64 (ENSRFEG00010014739)	KIF27 (ENSRFEG00010014622)	UBQLN1 (ENSRFEG00010014096)	IDNK (ENSRFEG00010013969)	FRMD3 (ENSRFEG00010013516)	RASEF (ENSRFEG00010013434)	ENSRFEG00010013409	TLE1 (ENSRFEG00010013065) #10	ENSRFEG00010012998	TLE4 (ENSRFEG00010012773) #13	ENSRFEG00010012640 #16	CEP78 (ENSRFEG00010012426) #17	GNAQ (ENSRFEG00010012381) #19	ENSRFEG00010012361	ENSRFEG00010012344	GNA14 (ENSRFEG00010012288) #22	ENSRFEG00010012234	VPS13A (ENSRFEG00010011976) #23	FOXB2 (ENSRFEG00010011890) #24	PRUNE2 (ENSRFEG00010011665) #26	GCNT1 (ENSRFEG00010011618) #27	RFK (ENSRFEG00010011567) #28	PCSK5 (ENSRFEG00010011327) #29	OSTF1 (ENSRFEG00010011253) #30	NMRK1 (ENSRFEG00010011161) #31	CARNMT1 (ENSRFEG00010011074) #32	C9orf40 (ENSRFEG00010011017) #33	TRPM6 (ENSRFEG00010009962) #34	RORB (ENSRFEG00010009768) #35	ENSRFEG00010009637 #36	ENSRFEG00010009582
Microbat	MODERN SPECIES	968	RASEF (ENSMLUG00000013108)	ENSMLUG00000022623 ##9	ENSMLUG00000022889 ##9	TLE1 (ENSMLUG00000003088) #10	ENSMLUG00000026478	ENSMLUG00000022957	TLE4 (ENSMLUG00000005564) #13	ENSMLUG00000026096	ENSMLUG00000029964	ENSMLUG00000022667 ##9	ENSMLUG00000026585	PSAT1 (ENSMLUG00000010261) #16	CEP78 (ENSMLUG00000010238) #17	ENSMLUG00000006026	GNAQ (ENSMLUG00000003741) #19	GNA14 (ENSMLUG00000003737) #22	VPS13A (ENSMLUG00000003688) #23	PRUNE2 (ENSMLUG00000001535) #26	GCNT1 (ENSMLUG00000001534) #27	RFK (ENSMLUG00000015223) #28	PCSK5 (ENSMLUG00000015196) #29	OSTF1 (ENSMLUG00000008299) #30	NMRK1 (ENSMLUG00000008290) #31	ENSMLUG00000008278 #32	TRPM6 (ENSMLUG00000006442) #34	ENSMLUG00000023224	RORB (ENSMLUG00000006436) #35	ENSMLUG00000006572	ANXA1 (ENSMLUG00000000473) #36	ENSMLUG00000022963	ALDH1A1 (ENSMLUG00000007209) #37
Atlantogenata	ANCESTRAL SPECIES	67	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Afrotheria	ANCESTRAL SPECIES	75	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00940000164433	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Afrotheria_a	ANCESTRAL SPECIES	74	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT00940000164433	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00390000001325 #33	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609.ob.b #37
Hyrax	MODERN SPECIES	6921																GNA14 (ENSPCAG00000006731) #22	VPS13A (ENSPCAG00000006360) #23
Elephant	MODERN SPECIES	472	KIF27 (ENSLAFG00000017658)	GKAP1 (ENSLAFG00000011867)	UBQLN1 (ENSLAFG00000016447)	IDNK (ENSLAFG00000026646)	FRMD3 (ENSLAFG00000007148)	RASEF (ENSLAFG00000010552)	TLE1 (ENSLAFG00000004803) #10	ENSLAFG00000031777	ENSLAFG00000014287	TLE4 (ENSLAFG00000012471) #13	ENSLAFG00000029717	ENSLAFG00000030525 ##9	PSAT1 (ENSLAFG00000017917) #16	CEP78 (ENSLAFG00000012846) #17	GNAQ (ENSLAFG00000001575) #19	GNA14 (ENSLAFG00000008566) #22	VPS13A (ENSLAFG00000008547) #23	FOXB2 (ENSLAFG00000022363) #24	ENSLAFG00000018547 #26	GCNT1 (ENSLAFG00000021806) #27	ENSLAFG00000011147 #28	PCSK5 (ENSLAFG00000015309) #29	OSTF1 (ENSLAFG00000015441) #30	NMRK1 (ENSLAFG00000005888) #31	CARNMT1 (ENSLAFG00000007066) #32	C9orf40 (ENSLAFG00000007065) #33	ENSLAFG00000028704 #34	ENSLAFG00000004612 #34	RORB (ENSLAFG00000012757) #35	ANXA1 (ENSLAFG00000009163) #36	ENSLAFG00000029788
Tenrec	MODERN SPECIES	7556															GNAQ (ENSETEG00000000740) #19	GNA14 (ENSETEG00000000736) #22
Xenarthra	ANCESTRAL SPECIES	517									ENSGT00950000183043.a.b.b.a.a.b #9	ENSGT00950000183043.a.b.b.a.b ##9	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23
Armadillo	MODERN SPECIES	3656									ENSDNOG00000048345 #9	ENSDNOG00000036520 ##9	TLE1 (ENSDNOG00000000937) #10	TLE4 (ENSDNOG00000011349) #13	PSAT1 (ENSDNOG00000034862) #16	CEP78 (ENSDNOG00000002843) #17	ENSDNOG00000006353	GNA14 (ENSDNOG00000006349) #22	VPS13A (ENSDNOG00000006286) #23	ENSDNOG00000031463	ENSDNOG00000046646	FOXB2 (ENSDNOG00000041384) #24
Sloth	MODERN SPECIES	7318																GNA14 (ENSCHOG00000006744) #22	VPS13A (ENSCHOG00000006671) #23
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287.db.a #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.fb	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287.db.a #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a
Diprotodontia	ANCESTRAL SPECIES	21	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.fb	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287.db.a #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a
Diprotodontia_a	ANCESTRAL SPECIES	17	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.a.a	ENSGT00390000002374	ENSGT00940000157487.fb.a	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287.db.a #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00940000157664	ENSGT00940000157173	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00550000075033	ENSGT00390000003561	ENSGT00950000183038.a.b.b.a	ENSGT01000000214440.A.b	ENSGT00930000151031	ENSGT00940000157688	ENSGT00950000182992.a.a
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1066	ENSVURG00010019808	ENSVURG00010019847	ENSVURG00010019852	ENSVURG00010019882	ENSVURG00010019908	ENSVURG00010019946	ENSVURG00010019961	ENSVURG00010020018	ENSVURG00010020065	ENSVURG00010020081 #10	ENSVURG00010020103	ENSVURG00010020119 #13	ENSVURG00010020163 #16	ENSVURG00010000421 #17	GNAQ (ENSVURG00010000588) #19	ENSVURG00010000975 #22	ENSVURG00010001020 #23	ENSVURG00010001103 #24	ENSVURG00010001165 #26	ENSVURG00010001227 #26	ENSVURG00010001214 #26	GCNT1 (ENSVURG00010001238) #27	ENSVURG00010001354	ENSVURG00010001572	ENSVURG00010001697	ENSVURG00010001751	ENSVURG00010001761	ENSVURG00010001782	ENSVURG00010001827	ENSVURG00010001888	ENSVURG00010001910
Common wonbat	MODERN SPECIES	1066	ENSVURG00010015615	ENSVURG00010015628	ENSVURG00010015650	ENSVURG00010015676	ENSVURG00010015680	ENSVURG00010015703	ENSVURG00010015728	ENSVURG00010015787	ENSVURG00010016176	ENSVURG00010016194	ENSVURG00010016210 #10	ENSVURG00010016243	ENSVURG00010016303 #13	ENSVURG00010016375 #16	ENSVURG00010016387 #17	ENSVURG00010016447 #22	ENSVURG00010016470	ENSVURG00010016491 #23	ENSVURG00010016551 #24	ENSVURG00010016561 #26	ENSVURG00010016577 #26	ENSVURG00010016612	ENSVURG00010016646	ENSVURG00010016686	ENSVURG00010016697	ENSVURG00010016707	ENSVURG00010016712	ENSVURG00010016728	ENSVURG00010016739	ENSVURG00010016751	ENSVURG00010016764
koala	MODERN SPECIES	59												TLE4 (ENSPCIG00000006249) #13	PSAT1 (ENSPCIG00000012123) #16	ENSPCIG00000012127 #17	GNAQ (ENSPCIG00000012132) #19	GNA14 (ENSPCIG00000030641) #22	VPS13A (ENSPCIG00000010866) #23	FOXB2 (ENSPCIG00000031696) #24	ENSPCIG00000021277 #26	ENSPCIG00000014745 #26	ENSPCIG00000014743 #26	ANKS6 (ENSPCIG00000000722)	ENSPCIG00000000733	ENSPCIG00000000782	TGFBR1 (ENSPCIG00000000853)	ALG2 (ENSPCIG00000000867)	SEC61B (ENSPCIG00000000880)	ENSPCIG00000014397	NR4A3 (ENSPCIG00000025397)	ENSPCIG00000026489	ERP44 (ENSPCIG00000026488)
Wallaby	MODERN SPECIES	6136																GNA14 (ENSMEUG00000015944) #22
Tasmanian devil	MODERN SPECIES		RMI1 (ENSSHAG00000017088)	HNRNPK (ENSSHAG00000017109)	C9orf64 (ENSSHAG00000017219)	KIF27 (ENSSHAG00000017257)	GKAP1 (ENSSHAG00000027385)	UBQLN1 (ENSSHAG00000017673)	IDNK (ENSSHAG00000022655)	FRMD3 (ENSSHAG00000029377)	ENSSHAG00000023779	RASEF (ENSSHAG00000031366)	TLE1 (ENSSHAG00000010221) #10	TLE4 (ENSSHAG00000017709) #13	PSAT1 (ENSSHAG00000018888) #16	ENSSHAG00000018907 #17	GNAQ (ENSSHAG00000009733) #19	GNA14 (ENSSHAG00000027605) #22	VPS13A (ENSSHAG00000003917) #23	ENSSHAG00000030882	FOXB2 (ENSSHAG00000027905) #24	ENSSHAG00000001230 #26	ENSSHAG00000029693 #26	ENSSHAG00000026570 #26	ENSSHAG00000003631 #27	ENSSHAG00000017605	ENSSHAG00000017474	COL15A1 (ENSSHAG00000016845)	TGFBR1 (ENSSHAG00000016699)	ALG2 (ENSSHAG00000021066)	SEC61B (ENSSHAG00000023694)	NR4A3 (ENSSHAG00000013487)	STX17 (ENSSHAG00000030239)
Opossum	MODERN SPECIES	5	ENSMODG00000044653	ENSMODG00000039525	ENSMODG00000051066	ENSMODG00000051332	ENSMODG00000045132	ENSMODG00000037285	ENSMODG00000016245	ENSMODG00000043875	ENSMODG00000047503	ENSMODG00000016240	ENSMODG00000049300	ENSMODG00000046248	PSAT1 (ENSMODG00000012960) #16	ENSMODG00000012952 #17	GNAQ (ENSMODG00000012943) #19	GNA14 (ENSMODG00000012932) #22	ENSMODG00000051183	ENSMODG00000012902 #23	ENSMODG00000049650 #23	FOXB2 (ENSMODG00000012804) #24	PRUNE2 (ENSMODG00000012786) #26	ANKS6 (ENSMODG00000012769)	GALNT12 (ENSMODG00000012753)	ENSMODG00000029358	ENSMODG00000049269	TGFBR1 (ENSMODG00000012679)	ALG2 (ENSMODG00000040576)	SEC61B (ENSMODG00000012664)	ENSMODG00000044791	ENSMODG00000027487	NR4A3 (ENSMODG00000012660)
Platypus	MODERN SPECIES	88	RMI1 (ENSOANG00000010899)	HNRNPK (ENSOANG00000014612)	C9orf64 (ENSOANG00000042188)	ENSOANG00000006741	GKAP1 (ENSOANG00000010900)	UBQLN1 (ENSOANG00000010928)	IDNK (ENSOANG00000037832)	FRMD3 (ENSOANG00000036670)	RASEF (ENSOANG00000010379)	TLE1 (ENSOANG00000020884) #10	TLE4 (ENSOANG00000007857) #13	PSAT1 (ENSOANG00000002968) #16	RPL8 (ENSOANG00000002646)	CEP78 (ENSOANG00000002647) #17	ENSOANG00000002649	GNA14 (ENSOANG00000037680) #22	ENSOANG00000050837	VPS13A (ENSOANG00000003028) #23	ENSOANG00000021049 #24	ENSOANG00000013582 #26	ENSOANG00000005175 #26	ENSOANG00000039000 #26	GCNT1 (ENSOANG00000005174) #27	RFK (ENSOANG00000048082) #28	ENSOANG00000040724 #29	OSTF1 (ENSOANG00000002022) #30	NMRK1 (ENSOANG00000011647) #31	CARNMT1 (ENSOANG00000041557) #32	TRPM6 (ENSOANG00000011650) #34	RORB (ENSOANG00000011655) #35	ANXA1 (ENSOANG00000013140) #36
Sauria	ANCESTRAL SPECIES	5	ENSGT00390000003774.b	ENSGT00390000009358	ENSGT00510000050177	ENSGT00940000154491.c	ENSGT00940000161506	ENSGT00390000014944.b	ENSGT00950000183081.b	ENSGT00390000004215.a.b.b.d	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000171049	ENSGT00940000176108	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.b	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000171049	ENSGT00940000176108	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000189515	ENSGT00940000158164 #34	ENSGT00940000157708 #35
Archosauria	ANCESTRAL SPECIES	31	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.b	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000189515	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Aves	ANCESTRAL SPECIES	4	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.b	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000189515	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
African ostrich	MODERN SPECIES	163																ENSSCUG00000000555 #22	VPS13A (ENSSCUG00000000477) #23	ENSSCUG00000000445 #26
Neognathae	ANCESTRAL SPECIES	19	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.b.a.a	ENSGT00390000002374	ENSGT00940000157487.y	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000189515	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00940000161055	ENSGT00940000153434.b.a.a	ENSGT00390000002374	ENSGT00940000157487.y	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.lb.a #28	ENSGT00530000063335.B.a.b	ENSGT00940000156820.a.a	ENSGT00390000017892	ENSGT00940000156117	ENSGT00550000074816.B	ENSGT00940000160905	ENSGT00940000157366	ENSGT00940000153636.b	ENSGT00940000157611	ENSGT00440000033805
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.b.b	ENSGT00390000002374	ENSGT00940000157487.y	ENSGT00390000008742.b	ENSGT00940000156437.i.a	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.lb.a #28	ENSGT00530000063335.B.a.b	ENSGT00940000156820.a.a	ENSGT00390000017892	ENSGT00940000156117	ENSGT01100000263829	ENSGT00940000160905	ENSGT00940000157366	ENSGT00940000153636.b	ENSGT00940000157611	ENSGT00440000033805
Golden eagle	MODERN SPECIES	91	RMI1 (ENSACCG00020013695)	ENSACCG00020013718	C9orf64 (ENSACCG00020013750)	ENSACCG00020013764	ENSACCG00020013784	GKAP1 (ENSACCG00020013838)	UBQLN1 (ENSACCG00020013863)	IDNK (ENSACCG00020013880)	FRMD3 (ENSACCG00020013964)	RASEF (ENSACCG00020014120)	TLE1 (ENSACCG00020014335) #10	TLE4 (ENSACCG00020014435) #13	PSAT1 (ENSACCG00020014490) #16	CEP78 (ENSACCG00020014520) #17	GNAQ (ENSACCG00020014556) #19	GNA14 (ENSACCG00020014570) #22	VPS13A (ENSACCG00020015054) #23	FOXB2 (ENSACCG00020015529) #24	ENSACCG00020015553 #26	ENSACCG00020015582 #26	GCNT1 (ENSACCG00020015597) #27	ENSACCG00020015611 #28	ENTREP1 (ENSACCG00020015643)	APBA1 (ENSACCG00020015667)	PTAR1 (ENSACCG00020015676)	MAMDC2 (ENSACCG00020015741)	ENSACCG00020015799	KLF9 (ENSACCG00020015824)	TRPM3 (ENSACCG00020015843)	ENSACCG00020015870	CEMIP2 (ENSACCG00020015901)
Kakapo	MODERN SPECIES	19	SLC28A3 (ENSSHBG00005020535)	RMI1 (ENSSHBG00005020541)	HNRNPK (ENSSHBG00005020544)	C9orf64 (ENSSHBG00005020551)	KIF27 (ENSSHBG00005020554)	ENSSHBG00005000104	ENSSHBG00005009843	ENSSHBG00005009867	IDNK (ENSSHBG00005009906)	FRMD3 (ENSSHBG00005009944)	RASEF (ENSSHBG00005009980)	TLE1 (ENSSHBG00005010062) #10	TLE4 (ENSSHBG00005010088) #13	PSAT1 (ENSSHBG00005010114) #16	ENSSHBG00005010138 #19	GNA14 (ENSSHBG00005010165) #22	VPS13A (ENSSHBG00005010243) #23	FOXB2 (ENSSHBG00005010328) #24	ENSSHBG00005010344 #26	ENSSHBG00005010378 #26	GCNT1 (ENSSHBG00005010414) #27	ENSSHBG00005010435 #28	ENTREP1 (ENSSHBG00005010461)	APBA1 (ENSSHBG00005010535)	PTAR1 (ENSSHBG00005010649)	MAMDC2 (ENSSHBG00005010809)	ENSSHBG00005011898	KLF9 (ENSSHBG00005011943)	TRPM3 (ENSSHBG00005012320)	CEMIP2 (ENSSHBG00005014315)	ABHD17B (ENSSHBG00005014339)
Galloanserae	ANCESTRAL SPECIES	18	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.b.a.a	ENSGT00390000002374	ENSGT00940000157487.y	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000189515	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Anatidae	ANCESTRAL SPECIES	12	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.b.b	ENSGT00390000002374	ENSGT00940000157487.y	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00530000063335.B.a.b	ENSGT00940000156820.a.a	ENSGT00390000017892	ENSGT00940000156117	ENSGT01100000263829	ENSGT00940000160905	ENSGT00940000157366	ENSGT00940000153636.b	ENSGT00940000157611	ENSGT00440000033805	ENSGT00390000017130
Pink-footed goose	MODERN SPECIES	138									RASEF (ENSABRG00000018279)	TLE1 (ENSABRG00000018269) #10	TLE4 (ENSABRG00000018244) #13	PSAT1 (ENSABRG00000018226) #16	CEP78 (ENSABRG00000018217) #17	ENSABRG00000018215	ENSABRG00000018214 #19	GNA14 (ENSABRG00000018151) #22	VPS13A (ENSABRG00000017386) #23
Duck	MODERN SPECIES	4281	HNRNPK (ENSAPLG00000010986)	C9orf64 (ENSAPLG00000020199)	ENSAPLG00000030886	GKAP1 (ENSAPLG00000014453)	UBQLN1 (ENSAPLG00000014441)	IDNK (ENSAPLG00000017965)	ENSAPLG00000026639	FRMD3 (ENSAPLG00000014312)	RASEF (ENSAPLG00000013969)	TLE1 (ENSAPLG00000012402) #10	ENSAPLG00000027958	TLE4 (ENSAPLG00000004314) #13	PSAT1 (ENSAPLG00000005388) #16	CEP78 (ENSAPLG00000005202) #17	GNAQ (ENSAPLG00000005161) #19	GNA14 (ENSAPLG00000004760) #22	VPS13A (ENSAPLG00000005010) #23	FOXB2 (ENSAPLG00000006208) #24	PRUNE2 (ENSAPLG00000020377) #26	ENSAPLG00000024975	GCNT1 (ENSAPLG00000025966) #27	RFK (ENSAPLG00000030187) #28	ENTREP1 (ENSAPLG00000008627)	ENSAPLG00000028514	APBA1 (ENSAPLG00000008905)	PTAR1 (ENSAPLG00000009255)	ENSAPLG00000027170	MAMDC2 (ENSAPLG00000009256)	ENSAPLG00000009355	KLF9 (ENSAPLG00000031066)	TRPM3 (ENSAPLG00000009788)
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.b.a.a	ENSGT00390000002374	ENSGT00940000157487.y	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.sb #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000189515	ENSGT00940000158164 #34	ENSGT00940000157708.d #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00390000016025.a	ENSGT00940000161055	ENSGT00940000153434.b.a.a	ENSGT00390000002374	ENSGT00940000157487.y	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537.sb #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708.d #35	ENSGT00940000155221 #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a	ENSGT00940000156165.k.a
Chicken	MODERN SPECIES	131	RMI1 (ENSGALG00010014737)	HNRNPK (ENSGALG00010014677)	CZH9orf64 (ENSGALG00010014592)	KIF27 (ENSGALG00010014570)	GKAP1 (ENSGALG00010014537)	UBQLN1 (ENSGALG00010015628)	IDNK (ENSGALG00010015621)	FRMD3 (ENSGALG00010015589)	RASEF (ENSGALG00010015541)	ENSGALG00010016632	TLE1 (ENSGALG00010015766) #10	TLE4 (ENSGALG00010015946) #13	PSAT1 (ENSGALG00010015533) #16	CEP78 (ENSGALG00010015894) #17	GNAQ (ENSGALG00010015212) #19	GNA14 (ENSGALG00010015208) #22	VPS13A (ENSGALG00010015181) #23	FOXB2 (ENSGALG00010015144) #24	ENSGALG00010016898 #26	ENSGALG00010015138 #26	GCNT1 (ENSGALG00010015132) #27	RFK (ENSGALG00010015064) #28	PCSK5 (ENSGALG00010015038) #29	OSTF1 (ENSGALG00010015493) #30	NMRK1 (ENSGALG00010015466) #31	CARNMT1 (ENSGALG00010015413) #32	TRPM6 (ENSGALG00010015320) #34	RORB (ENSGALG00010015250) #35	ANXA1 (ENSGALG00010014114) #36	ALDH1A1 (ENSGALG00010014104) #37	TMC1 (ENSGALG00010015872)
Japanese quail	MODERN SPECIES	699	C9orf64 (ENSCJPG00005009409)	KIF27 (ENSCJPG00005009390)	ENSCJPG00005009388	UBQLN1 (ENSCJPG00005009387)	IDNK (ENSCJPG00005009386)	FRMD3 (ENSCJPG00005009385)	RASEF (ENSCJPG00005009383)	ENSCJPG00005009382	ENSCJPG00005009380	TLE1 (ENSCJPG00005009379) #10	TLE4 (ENSCJPG00005009372) #13	ENSCJPG00005009367	PSAT1 (ENSCJPG00005009365) #16	CEP78 (ENSCJPG00005009363) #17	GNAQ (ENSCJPG00005009359) #19	GNA14 (ENSCJPG00005009354) #22	VPS13A (ENSCJPG00005007910) #23	FOXB2 (ENSCJPG00005007899) #24	PRUNE2 (ENSCJPG00005007885) #26	GCNT1 (ENSCJPG00005007882) #27	ENSCJPG00005007880 #28	PCSK5 (ENSCJPG00005007863) #29	OSTF1 (ENSCJPG00005007842) #30	NMRK1 (ENSCJPG00005007841) #31	CARNMT1 (ENSCJPG00005007840) #32	ENSCJPG00005007839	TRPM6 (ENSCJPG00005007835) #34	RORB (ENSCJPG00005007829) #35	ANXA1 (ENSCJPG00005007826) #36	ALDH1A1 (ENSCJPG00005007817) #37	TMC1 (ENSCJPG00005007792)
Australian saltwater crocodile	MODERN SPECIES	67	SLC28A3 (ENSCPRG00005006926)	RMI1 (ENSCPRG00005006921)	HNRNPK (ENSCPRG00005006910)	C9orf64 (ENSCPRG00005006899)	KIF27 (ENSCPRG00005006887)	GKAP1 (ENSCPRG00005006877)	UBQLN1 (ENSCPRG00005006861)	IDNK (ENSCPRG00005006853)	FRMD3 (ENSCPRG00005006777)	RASEF (ENSCPRG00005006676)	TLE1 (ENSCPRG00005006631) #10	TLE4 (ENSCPRG00005006614) #13	PSAT1 (ENSCPRG00005006592) #16	CEP78 (ENSCPRG00005006576) #17	GNAQ (ENSCPRG00005006573) #19	GNA14 (ENSCPRG00005006556) #22	VPS13A (ENSCPRG00005006496) #23	PRUNE2 (ENSCPRG00005006454) #26	GCNT1 (ENSCPRG00005006444) #27	RFK (ENSCPRG00005006442) #28	PCSK5 (ENSCPRG00005006403) #29	ENSCPRG00005006385	OSTF1 (ENSCPRG00005006380) #30	NMRK1 (ENSCPRG00005006370) #31	CARNMT1 (ENSCPRG00005006362) #32	TRPM6 (ENSCPRG00005006349) #34	RORB (ENSCPRG00005006328) #35	ANXA1 (ENSCPRG00005006317) #36	ALDH1A1 (ENSCPRG00005006260) #37	TMC1 (ENSCPRG00005006240)	ZFAND5 (ENSCPRG00005006217)
Cryptodira	ANCESTRAL SPECIES	48										ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000171049	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000189515	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.c.a.b	ENSGT01000000214430.c.a.a.a.a	ENSGT01000000214430.c.b.b.b.b.b	ENSGT01000000214430.c.b.a.b.a.b	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000171049	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000189515	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b
Emydidae	ANCESTRAL SPECIES	20	ENSGT00730000110920.b.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.c.a.b	ENSGT01000000214430.c.a.a.a.a	ENSGT01000000214430.c.b.b.b.b.b	ENSGT01000000214430.c.b.a.b.a.b.d	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000189515	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
painted turtle	MODERN SPECIES	705	ENSCPBG00000019022	ENSCPBG00000019023	ENSCPBG00000019024	ENSCPBG00000019027	ENSCPBG00000019028	ENSCPBG00000019030	ENSCPBG00000019034	ENSCPBG00000019035	RASEF (ENSCPBG00000019037)	TLE1 (ENSCPBG00000019082) #10	TLE4 (ENSCPBG00000019087) #13	PSAT1 (ENSCPBG00000019096) #16	CEP78 (ENSCPBG00000019104) #17	ENSCPBG00000019108	ENSCPBG00000019109	GNA14 (ENSCPBG00000019112) #22	VPS13A (ENSCPBG00000019204) #23	FOXB2 (ENSCPBG00000019707) #24	ENSCPBG00000019712 #26	ENSCPBG00000019728 #26	GCNT1 (ENSCPBG00000019732) #27	RFK (ENSCPBG00000019734) #28	ENSCPBG00000019735 #29	PCSK5 (ENSCPBG00000019742) #29	OSTF1 (ENSCPBG00000019756) #30	CARNMT1 (ENSCPBG00000019763) #32	ENSCPBG00000019771	TRPM6 (ENSCPBG00000019827) #34	RORB (ENSCPBG00000020082) #35	ANXA1 (ENSCPBG00000020089) #36	ENSCPBG00000020092
Three-toed box turtle	MODERN SPECIES	50	ENSTMTG00000017693	MLLT3 (ENSTMTG00000017725)	ENSTMTG00000017737	FOCAD (ENSTMTG00000017986)	HACD4 (ENSTMTG00000020159)	ENSTMTG00000020167	ENSTMTG00000020174	RASEF (ENSTMTG00000020204)	TLE1 (ENSTMTG00000020394) #10	ENSTMTG00000020413 #13	ENSTMTG00000020432 #13	PSAT1 (ENSTMTG00000020439) #16	ENSTMTG00000020447	CEP78 (ENSTMTG00000020456) #17	GNAQ (ENSTMTG00000020463) #19	GNA14 (ENSTMTG00000020468) #22	VPS13A (ENSTMTG00000020491) #23	FOXB2 (ENSTMTG00000020568) #24	PRUNE2 (ENSTMTG00000020608) #26	GCNT1 (ENSTMTG00000020794) #27	RFK (ENSTMTG00000020802) #28	PCSK5 (ENSTMTG00000020815) #29	OSTF1 (ENSTMTG00000020837) #30	NMRK1 (ENSTMTG00000020856) #31	CARNMT1 (ENSTMTG00000020887) #32	ENSTMTG00000020895	TRPM6 (ENSTMTG00000003242) #34	RORB (ENSTMTG00000003307) #35	ANXA1 (ENSTMTG00000003349) #36	ENSTMTG00000003394	ALDH1A1 (ENSTMTG00000003431) #37
Testudinidae	ANCESTRAL SPECIES	15	ENSGT01000000214430.c.b.a.a.a.b	ENSGT01030000234532.B.e.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01000000214430.c.a.b	ENSGT01000000214430.c.a.a.a.a	ENSGT01000000214430.c.b.b.b.b.b	ENSGT01000000214430.c.b.a.b.a.b	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000171049	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Goode s thornscrub tortoise	MODERN SPECIES	20	ENSGEVG00005020719	ENSGEVG00005020720	ENSGEVG00005020725	ENSGEVG00005020726	ENSGEVG00005020731	RASEF (ENSGEVG00005020748)	TLE1 (ENSGEVG00005020765) #10	ENSGEVG00005020771	TLE4 (ENSGEVG00005020789) #13	ENSGEVG00005020844	ENSGEVG00005020845	PSAT1 (ENSGEVG00005020848) #16	CEP78 (ENSGEVG00005009089) #17	ENSGEVG00005009209	ENSGEVG00005009240	GNA14 (ENSGEVG00005009271) #22	VPS13A (ENSGEVG00005009336) #23	FOXB2 (ENSGEVG00005009541) #24	ENSGEVG00005009580 #26	ENSGEVG00005009642 #26	GCNT1 (ENSGEVG00005009784) #27	RFK (ENSGEVG00005009802) #28	ENSGEVG00005009826	PCSK5 (ENSGEVG00005009905) #29	OSTF1 (ENSGEVG00005010236) #30	NMRK1 (ENSGEVG00005010267) #31	CARNMT1 (ENSGEVG00005010329) #32	TRPM6 (ENSGEVG00005010374) #34	RORB (ENSGEVG00005010680) #35	ANXA1 (ENSGEVG00005010829) #36	ENSGEVG00005011063
Abingdon island giant tortoise	MODERN SPECIES	1517													PSAT1 (ENSCABG00000010221) #16	CEP78 (ENSCABG00000010224) #17	ENSCABG00000010234	GNA14 (ENSCABG00000010237) #22	VPS13A (ENSCABG00000010278) #23	FOXB2 (ENSCABG00000012819) #24	KCTD4 (ENSCABG00000012822)	ENSCABG00000012823
Chinese turtle	MODERN SPECIES	1047													PSAT1 (ENSPSIG00000006099) #16	CEP78 (ENSPSIG00000008337) #17	ENSPSIG00000008891	GNA14 (ENSPSIG00000010004) #22	VPS13A (ENSPSIG00000011081) #23	PRUNE2 (ENSPSIG00000010175) #26
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00390000003364	ENSGT00940000158577	ENSGT00390000009358	ENSGT00510000050177	ENSGT00940000154491.c	ENSGT00940000161506	ENSGT00390000014944.b	ENSGT00950000183081.b	ENSGT00390000004215.a.b.b.d	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1616													PSAT1 (ENSSPUG00000015619) #16	CEP78 (ENSSPUG00000015513) #17	ENSSPUG00000015482	ENSSPUG00000015475 #22	ENSSPUG00000015465 #22	ENSSPUG00000015458	ENSSPUG00000015383 #23	ENSSPUG00000015353 ##23	ENSSPUG00000015344	ENSSPUG00000015326 #23	ENSSPUG00000015316	FOXB2 (ENSSPUG00000015308) #24	ENSSPUG00000015301 #26	ENSSPUG00000015265 #26	RFK (ENSSPUG00000015243) #28	PCSK5 (ENSSPUG00000015217) #29	OSTF1 (ENSSPUG00000015197) #30	NMRK1 (ENSSPUG00000015186) #31	CARNMT1 (ENSSPUG00000015140) #32
tuatara	MODERN SPECIES	1616												PSAT1 (ENSSPUG00000015619) #16	CEP78 (ENSSPUG00000015513) #17	ENSSPUG00000015482	ENSSPUG00000015475 #22	ENSSPUG00000015465 #22	ENSSPUG00000015458	ENSSPUG00000015383 #23	ENSSPUG00000015353 ##23	ENSSPUG00000015344	ENSSPUG00000015326 #23	ENSSPUG00000015316	FOXB2 (ENSSPUG00000015308) #24	ENSSPUG00000015301 #26	ENSSPUG00000015265 #26	RFK (ENSSPUG00000015243) #28	PCSK5 (ENSSPUG00000015217) #29	OSTF1 (ENSSPUG00000015197) #30	NMRK1 (ENSSPUG00000015186) #31	CARNMT1 (ENSSPUG00000015140) #32	TRPM6 (ENSSPUG00000014760) #34
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000161055	ENSGT00940000153434.b	ENSGT00390000002374	ENSGT00940000157487.eb	ENSGT00940000157487.db	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000190269	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Laterata	ANCESTRAL SPECIES	8	ENSGT00940000161055	ENSGT00940000153434.b	ENSGT00390000002374	ENSGT00940000157487.eb	ENSGT00940000157487.db	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000190269	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Common wall lizard	MODERN SPECIES	2	ENSPMRG00000016853	ENSPMRG00000016858	ENSPMRG00000016869	RASEF (ENSPMRG00000016876)	TLE1 (ENSPMRG00000016889) #10	ENSPMRG00000016913	TLE4 (ENSPMRG00000016921) #13	ENSPMRG00000016938	ENSPMRG00000016946	ENSPMRG00000016950	PSAT1 (ENSPMRG00000016957) #16	CEP78 (ENSPMRG00000016965) #17	ENSPMRG00000016976	ENSPMRG00000009861	ENSPMRG00000009954	GNA14 (ENSPMRG00000010242) #22	VPS13A (ENSPMRG00000010569) #23	ENSPMRG00000011850	FOXB2 (ENSPMRG00000011853) #24	ENSPMRG00000011855 #26	ENSPMRG00000011866 #26	GCNT1 (ENSPMRG00000011872) #27	RFK (ENSPMRG00000011873) #28	PCSK5 (ENSPMRG00000011949) #29	ENSPMRG00000012583	OSTF1 (ENSPMRG00000012586) #30	NMRK1 (ENSPMRG00000012589) #31	CARNMT1 (ENSPMRG00000012594) #32	ENSPMRG00000012598	TRPM6 (ENSPMRG00000012803) #34	RORB (ENSPMRG00000014404) #35
Argentine black and white tegu	MODERN SPECIES	25	C9orf64 (ENSSMRG00000019175)	KIF27 (ENSSMRG00000019173)	GKAP1 (ENSSMRG00000019172)	UBQLN1 (ENSSMRG00000019171)	IDNK (ENSSMRG00000019170)	ENSSMRG00000019169	FRMD3 (ENSSMRG00000019168)	ENSSMRG00000019167	RASEF (ENSSMRG00000019166)	TLE1 (ENSSMRG00000019001) #10	ENSSMRG00000018997	TLE4 (ENSSMRG00000018996) #13	PSAT1 (ENSSMRG00000018994) #16	CEP78 (ENSSMRG00000018993) #17	ENSSMRG00000018991	GNA14 (ENSSMRG00000018990) #22	VPS13A (ENSSMRG00000018987) #23	FOXB2 (ENSSMRG00000018986) #24	ENSSMRG00000018985 #26	ENSSMRG00000018983 #26	GCNT1 (ENSSMRG00000018982) #27	RFK (ENSSMRG00000018980) #28	ENSSMRG00000018979 #29	PCSK5 (ENSSMRG00000018978) #29	OSTF1 (ENSSMRG00000018977) #30	NMRK1 (ENSSMRG00000018976) #31	CARNMT1 (ENSSMRG00000018975) #32	ENSSMRG00000018974	TRPM6 (ENSSMRG00000018973) #34	RORB (ENSSMRG00000018972) #35	ENSSMRG00000018962 #36
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00940000161055	ENSGT00940000153434.b	ENSGT00390000002374	ENSGT00940000157487.eb	ENSGT00940000157487.db	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970.ab #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000190269	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Elapidae	ANCESTRAL SPECIES	7	ENSGT00940000161055	ENSGT00940000153434.b	ENSGT00390000002374	ENSGT00940000157487.eb	ENSGT00940000157487.db	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b.l.a #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b.t #23	ENSGT00940000161970.`b #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00960000190269	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37
Elapidae_a	ANCESTRAL SPECIES	9	ENSGT00940000161055	ENSGT00940000153434.b	ENSGT00390000002374	ENSGT00940000157487.eb	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00390000009358	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b.l.a #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b.t #23	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164.c #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a	ENSGT00940000156165
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT00940000161055	ENSGT00940000153434.b	ENSGT00390000002374	ENSGT00940000157487.eb	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00390000009358	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a #10	ENSGT01030000234519.e.a.a.a.a.b.l.a #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b.t #23	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164.c #34	ENSGT00940000157708 #35	ENSGT00940000155221 #36	ENSGT00950000183037.A.b	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.a	ENSGT00940000156165
Mainland tiger snake	MODERN SPECIES	1	HNRNPK (ENSNSUG00000014458)	C9orf64 (ENSNSUG00000014459)	ENSNSUG00000014460	ENSNSUG00000014461	GKAP1 (ENSNSUG00000014462)	UBQLN1 (ENSNSUG00000014464)	IDNK (ENSNSUG00000014976)	FRMD3 (ENSNSUG00000014978)	ENSNSUG00000014980	TLE1 (ENSNSUG00000014982) #10	TLE4 (ENSNSUG00000014992) #13	PSAT1 (ENSNSUG00000017692) #16	CEP78 (ENSNSUG00000017693) #17	ENSNSUG00000017694	ENSNSUG00000017695	GNA14 (ENSNSUG00000017696) #22	VPS13A (ENSNSUG00000017697) #23	ENSNSUG00000017700 #26	ENSNSUG00000017711 #26	GCNT1 (ENSNSUG00000017727) #27	PCSK5 (ENSNSUG00000017728) #29	OSTF1 (ENSNSUG00000017729) #30	NMRK1 (ENSNSUG00000017730) #31	CARNMT1 (ENSNSUG00000017731) #32	ENSNSUG00000017732	ENSNSUG00000017733 #34	ENSNSUG00000017734 #34	RORB (ENSNSUG00000017735) #35	ANXA1 (ENSNSUG00000017744) #36	ENSNSUG00000017745	ENSNSUG00000017746
Eastern brown snake	MODERN SPECIES	23	HNRNPK (ENSPTXG00000011080)	C9orf64 (ENSPTXG00000011079)	ENSPTXG00000011078	ENSPTXG00000011076	GKAP1 (ENSPTXG00000011073)	UBQLN1 (ENSPTXG00000011070)	IDNK (ENSPTXG00000011068)	FRMD3 (ENSPTXG00000011050)	ENSPTXG00000011048	RASEF (ENSPTXG00000011044)	TLE1 (ENSPTXG00000011035) #10	TLE4 (ENSPTXG00000011028) #13	PSAT1 (ENSPTXG00000011024) #16	CEP78 (ENSPTXG00000011019) #17	ENSPTXG00000011016	GNA14 (ENSPTXG00000011015) #22	VPS13A (ENSPTXG00000005943) #23	ENSPTXG00000005941 #26	ENSPTXG00000005940 #26	GCNT1 (ENSPTXG00000005939) #27	RFK (ENSPTXG00000005938) #28	PCSK5 (ENSPTXG00000005937) #29	OSTF1 (ENSPTXG00000005936) #30	NMRK1 (ENSPTXG00000005935) #31	CARNMT1 (ENSPTXG00000005934) #32	TRPM6 (ENSPTXG00000005920) #34	RORB (ENSPTXG00000005917) #35	ANXA1 (ENSPTXG00000005230) #36	ENSPTXG00000005171	ALDH1A1 (ENSPTXG00000005166) #37	ENSPTXG00000005164
Blue-lipped sea krait	MODERN SPECIES	3065																GNA14 (ENSLLTG00000015410) #22
Indian cobra	MODERN SPECIES	1	ENSNNAG00000016807	ENSNNAG00000016804	ENSNNAG00000016791	ENSNNAG00000016758	GKAP1 (ENSNNAG00000016726)	UBQLN1 (ENSNNAG00000016716)	IDNK (ENSNNAG00000016714)	FRMD3 (ENSNNAG00000016655)	RASEF (ENSNNAG00000016547)	TLE1 (ENSNNAG00000016494) #10	ENSNNAG00000016142 #13	PSAT1 (ENSNNAG00000016080) #16	ENSNNAG00000016066 #17	ENSNNAG00000016060 #17	ENSNNAG00000016049	GNA14 (ENSNNAG00000016037) #22	VPS13A (ENSNNAG00000011477) #23	FOXB2 (ENSNNAG00000011034) #24	ENSNNAG00000011008 #26	ENSNNAG00000010952 #26	GCNT1 (ENSNNAG00000010933) #27	RFK (ENSNNAG00000010914) #28	PCSK5 (ENSNNAG00000008993) #29	OSTF1 (ENSNNAG00000008798) #30	NMRK1 (ENSNNAG00000008740) #31	CARNMT1 (ENSNNAG00000008718) #32	TRPM6 (ENSNNAG00000008269) #34	RORB (ENSNNAG00000008087) #35	ANXA1 (ENSNNAG00000007974) #36	ENSNNAG00000007480	ALDH1A1 (ENSNNAG00000007407) #37
Lizard	MODERN SPECIES	1	KIF27 (ENSACAG00000001735)	ENSACAG00000040829	GKAP1 (ENSACAG00000001835)	ENSACAG00000042248	UBQLN1 (ENSACAG00000001880)	IDNK (ENSACAG00000002000)	FRMD3 (ENSACAG00000002032)	ENSACAG00000041514	RASEF (ENSACAG00000002155)	TLE1 (ENSACAG00000002262) #10	TLE4 (ENSACAG00000002789) #13	ENSACAG00000044927	ENSACAG00000025462	PSAT1 (ENSACAG00000006074) #16	ENSACAG00000005913	GNA14 (ENSACAG00000028039) #22	VPS13A (ENSACAG00000005655) #23	FOXB2 (ENSACAG00000023403) #24	ENSACAG00000034707 #26	PRUNE2 (ENSACAG00000005636) #26	GCNT1 (ENSACAG00000005572) #27	RFK (ENSACAG00000040387) #28	PCSK5 (ENSACAG00000005525) #29	ENSACAG00000041724	OSTF1 (ENSACAG00000005379) #30	NMRK1 (ENSACAG00000005328) #31	CARNMT1 (ENSACAG00000029442) #32	TRPM6 (ENSACAG00000005230) #34	RORB (ENSACAG00000005205) #35	ENSACAG00000038724	ANXA1 (ENSACAG00000011929) #36
Anura	ANCESTRAL SPECIES	29	ENSGT00940000161055	ENSGT00940000153434	ENSGT00940000157487	ENSGT01070000255930	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000172876	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.b.f #13	ENSGT01030000234519.e.a.a.a.a.b.e #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.b	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000155221.eb #36	ENSGT00940000154609 #37	ENSGT01050000244942.b.a.b.d	ENSGT01050000244942.b.a.a
Leishan spiny toad	MODERN SPECIES		FRMD3 (ENSLLEG00000005315)	ENSLLEG00000005386	RASEF (ENSLLEG00000005579)	ENSLLEG00000005666	ENSLLEG00000005677	ENSLLEG00000005719 #13	ENSLLEG00000006350 #13	ENSLLEG00000008971	ENSLLEG00000008995	ENSLLEG00000009010	ENSLLEG00000009037	PSAT1 (ENSLLEG00000009064) #16	CEP78 (ENSLLEG00000009151) #17	ENSLLEG00000009439	ENSLLEG00000009757	GNA14 (ENSLLEG00000009805) #22	VPS13A (ENSLLEG00000010186) #23	ENSLLEG00000010897	ENSLLEG00000010912	FOXB2 (ENSLLEG00000010937) #24	ENSLLEG00000011281 #26	ENSLLEG00000010977 #26	ENSLLEG00000011331	ENSLLEG00000011352	ENSLLEG00000011362	ENSLLEG00000011380	GCNT1 (ENSLLEG00000011390) #27	ENSLLEG00000011481 #28	PCSK5 (ENSLLEG00000011703) #29	OSTF1 (ENSLLEG00000012362) #30	ENSLLEG00000012532
Frog	MODERN SPECIES		ENSXETG00000040442	slc28a3 (ENSXETG00000011724)	rmi1 (ENSXETG00000011723)	hnrnpk (ENSXETG00000011722)	frmd3 (ENSXETG00000016772)	idnk (ENSXETG00000016771)	ubqln1 (ENSXETG00000016764)	gkap1 (ENSXETG00000016759)	mrps18c (ENSXETG00000027597)	rasef (ENSXETG00000016758)	tle1 (ENSXETG00000013999) #13	tle4 (ENSXETG00000010266) #13	psat1 (ENSXETG00000003623) #16	cep78 (ENSXETG00000003622) #17	lyve1 (ENSXETG00000003621)	gna14 (ENSXETG00000003619) #22	vps13a (ENSXETG00000003616) #23	foxb2 (ENSXETG00000045437) #24	taok2 (ENSXETG00000003614) #26	gcnt1 (ENSXETG00000000760) #27	rfk (ENSXETG00000000759) #28	pcsk5 (ENSXETG00000000758) #29	nmrk1 (ENSXETG00000031505) #32	ENSXETG00000049177	trpm6 (ENSXETG00000001048) #34	rorb (ENSXETG00000031251) #35	anxa1.3 (ENSXETG00000027479) #36	anxa1.2 (ENSXETG00000027478) #36	cyp1d1 (ENSXETG00000019609)	aldh1a1 (ENSXETG00000019615) #37	ENSXETG00000031532
Actinopterygii	ANCESTRAL SPECIES	43	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.b.r.a #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00500000045074	ENSGT00940000164811	ENSGT00940000161259.B	ENSGT00940000165296	ENSGT00940000162569.b	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b ##10	ENSGT01030000234519.e.a.a.b.a.a.b.b ##10	ENSGT00940000155885	ENSGT01030000234573.A.b.b.a	ENSGT00940000154630.a	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000171049	ENSGT00940000176108	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00390000005323 #32	ENSGT00940000158164 #34
Neopterygii	ANCESTRAL SPECIES	16	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000172876	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.b.r.a #13	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000165296	ENSGT00940000162569.b	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b ##10	ENSGT01030000234519.e.a.a.b.a.a.b.b ##10	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000171049	ENSGT00940000176108	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00940000164899	ENSGT00390000005323 #32
Osteoglossocephalai	ANCESTRAL SPECIES	33	ENSGT00940000161055	ENSGT00940000153434.c.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000172876	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.b ##10	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.a	ENSGT00940000161347 #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000171049	ENSGT00940000176108	ENSGT00940000155770 #29	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00940000164899	ENSGT00390000005323 #32
Clupeocephala	ANCESTRAL SPECIES	194															ENSGT00940000161347.a.a #19	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00390000013287 #17	ENSGT00970000197811	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00940000164899	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35	ENSGT00940000154019.b	ENSGT00940000155221.fb #36
Otomorpha	ANCESTRAL SPECIES	364			ENSGT00940000153241.A #16	ENSGT00940000159488	ENSGT00940000158577	ENSGT00390000008742	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00980000203448	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000013287 #17	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00920000149159 #30	ENSGT00940000156901.B
Otophysi	ANCESTRAL SPECIES	199	ENSGT00390000005989.b.a	ENSGT00940000157556.b	ENSGT00940000160930	ENSGT00940000158607	ENSGT01100000263540.B.d	ENSGT00720000108860	ENSGT00940000160296	ENSGT00940000155860.a.e	ENSGT00940000160547	ENSGT00940000154314.b	ENSGT00940000164226.a.a	ENSGT00940000159598	ENSGT00940000164254.a.a	ENSGT00390000008529	ENSGT00390000013287 #17	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23
Characiphysae	ANCESTRAL SPECIES	71	ENSGT00940000157556.b	ENSGT00940000160930	ENSGT00940000158607	ENSGT01100000263540.B.d	ENSGT00720000108860	ENSGT00940000160296	ENSGT00940000155860.a.e	ENSGT00940000160547	ENSGT00940000181688	ENSGT00940000154314.b	ENSGT00940000164226.a.a	ENSGT00940000159598	ENSGT00940000164254.a.a	ENSGT00390000008529	ENSGT00390000013287 #17	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000158663.c	ENSGT00970000196970	ENSGT00950000183082.b.a	ENSGT00940000164214.k.a	ENSGT00940000165511.a	ENSGT00940000158941	ENSGT00940000160418	ENSGT00940000160558	ENSGT00940000157079.b	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00940000160545	ENSGT00390000015226.c	ENSGT01030000234574.B.c.b.b.m	ENSGT00940000161259.A
Characiphysae_b	ANCESTRAL SPECIES	75	ENSGT00940000157556.b	ENSGT00940000160930	ENSGT00940000158607	ENSGT01100000263540.B.d	ENSGT00720000108860	ENSGT00940000160296	ENSGT00940000155860.a.e	ENSGT00940000160547	ENSGT00940000154314.b	ENSGT00940000164226.a.a	ENSGT00940000159598	ENSGT00940000164254.a.a	ENSGT00390000008529.d	ENSGT00390000008529.c	ENSGT00390000013287 #17	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000158663.c	ENSGT00970000196970	ENSGT00950000183082.b.a	ENSGT00940000164214.k.a	ENSGT00940000165511.a	ENSGT00940000158941	ENSGT00940000160418	ENSGT00940000160558	ENSGT00940000157079.b	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00940000160545	ENSGT00390000015226.c	ENSGT01030000234574.B.c.b.b.m	ENSGT00940000161259.A
Characoidei	ANCESTRAL SPECIES	72	ENSGT00940000157556.b	ENSGT00940000160930	ENSGT00940000158607	ENSGT01100000263540.B.d	ENSGT00720000108860	ENSGT00940000160296	ENSGT00940000155860.a.e	ENSGT00940000160547	ENSGT00940000154314.b	ENSGT00940000164226.a.a	ENSGT00940000159598	ENSGT00940000164254.a.a	ENSGT00390000008529.d	ENSGT00390000008529.c	ENSGT00390000013287 #17	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000158663.c	ENSGT00950000183082.b.a	ENSGT00940000164214.k.a	ENSGT00940000165511.a	ENSGT00940000158941	ENSGT00940000160418	ENSGT00940000160558	ENSGT00940000157079.b	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00940000160545	ENSGT00390000015226.c	ENSGT01030000234574.B.c.b.b.m	ENSGT00940000159331.a	ENSGT00390000015537 #28
Mexicana tetra	MODERN SPECIES	1345													tbx16 (ENSAMXG00000001195)	CABIN1 (ENSAMXG00000001215)	CEP78 (ENSAMXG00000032851) #17	GNA14 (ENSAMXG00000001059) #22	vps13a (ENSAMXG00000001062) #23	ENSAMXG00000029944	adrb3a (ENSAMXG00000001079)	npm2a (ENSAMXG00000001084)	got1l1 (ENSAMXG00000029051)	prlhr2a (ENSAMXG00000001098)	ENSAMXG00000001107	adgra2 (ENSAMXG00000001112)	ENSAMXG00000038956
Red-bellied piranha	MODERN SPECIES	44	slc25a37 (ENSPNAG00000020230)	entpd4 (ENSPNAG00000020216)	chmp7 (ENSPNAG00000005145)	lgi3 (ENSPNAG00000003637)	fgfr1a (ENSPNAG00000020161)	ENSPNAG00000020122	ankrd39 (ENSPNAG00000003624)	ENSPNAG00000020086	kctd9a (ENSPNAG00000020060)	npy8br (ENSPNAG00000006422)	KLHL22 (ENSPNAG00000019987)	tbx16 (ENSPNAG00000019971)	ENSPNAG00000019831	CABIN1 (ENSPNAG00000019814)	CEP78 (ENSPNAG00000019733) #17	GNA14 (ENSPNAG00000019726) #22	vps13a (ENSPNAG00000019644) #23	adrb3a (ENSPNAG00000018201)	npm2a (ENSPNAG00000018186)	got1l1 (ENSPNAG00000003509)	prlhr2a (ENSPNAG00000018165)	ENSPNAG00000018143	adgra2 (ENSPNAG00000018110)	pdlim2 (ENSPNAG00000018080)	sorbs3 (ENSPNAG00000018023)	ENSPNAG00000018001	ENSPNAG00000017995	nkx6.3 (ENSPNAG00000017980)	inpp5l (ENSPNAG00000017965)	GPAT4 (ENSPNAG00000017911)	ENSPNAG00000017815
Electric eel	MODERN SPECIES	622					ENSEEEG00000003680	lgi3 (ENSEEEG00000003659)	fgfr1a (ENSEEEG00000001091)	ankrd39 (ENSEEEG00000000908)	ENSEEEG00000000907	kctd9a (ENSEEEG00000000895)	KLHL22 (ENSEEEG00000000877)	tbx16 (ENSEEEG00000000873)	ENSEEEG00000000870	ENSEEEG00000000869 #17	ENSEEEG00000000867 #17	GNA14 (ENSEEEG00000000865) #22	vps13a (ENSEEEG00000000493) #23
Channel catfish	MODERN SPECIES	24	ren (ENSIPUG00000012121)	Bicd2 (ENSIPUG00000012042)	ENSIPUG00000012009	renbp (ENSIPUG00000011934)	kdm5c (ENSIPUG00000011859)	ENSIPUG00000011840	ENSIPUG00000011790	ENSIPUG00000011736	KCTD9 (ENSIPUG00000011636)	Npy1r (ENSIPUG00000011623)	klhl22 (ENSIPUG00000011577)	tbx16 (ENSIPUG00000011441)	asb4 (ENSIPUG00000011415)	cabin1 (ENSIPUG00000011197)	cep78 (ENSIPUG00000011146) #17	gna14 (ENSIPUG00000011128) #22	vps13a (ENSIPUG00000010219) #23	adrb3a (ENSIPUG00000010110)	npm2a (ENSIPUG00000010101)	got1l1 (ENSIPUG00000010086)	prlhr2a (ENSIPUG00000010082)	ENSIPUG00000010070	adgra2 (ENSIPUG00000009932)	Pdlim2 (ENSIPUG00000009855)	sorbs3 (ENSIPUG00000009782)	ENSIPUG00000009773	ENSIPUG00000009748	nkx6-3 (ENSIPUG00000009736)	inpp5l (ENSIPUG00000009715)	ENSIPUG00000009699	GPAT4 (ENSIPUG00000009607)
Cyprinoidei	ANCESTRAL SPECIES	99	ENSGT00940000164380.a	ENSGT00390000005989.b.a	ENSGT00940000160930	ENSGT00940000158607	ENSGT01100000263540.B.d	ENSGT00720000108860	ENSGT00940000160296	ENSGT00940000155860.a.e.b	ENSGT00940000160547	ENSGT00940000154314.b	ENSGT00940000164226.a.a	ENSGT00940000159598	ENSGT00940000164254.a.a	ENSGT00390000008529	ENSGT00390000013287 #17	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	224	ENSGT00390000005989.b.a.a	ENSGT00940000158996.g.b	ENSGT00940000160930.a	ENSGT00940000158607.n	ENSGT01100000263540.B.d.b	ENSGT00720000108860	ENSGT00940000160296.f	ENSGT00940000155860.a.e.a	ENSGT00940000154314.b.a	ENSGT00950000182847.b.b.b.d	ENSGT00940000164226.a.a.f	ENSGT00940000159598.c	ENSGT00940000164254.a.a.b	ENSGT00390000008529.f	ENSGT00390000013287 #17	ENSGT00940000158510.e #22	ENSGT00940000159152.d.m.b
Cyprininae_a	ANCESTRAL SPECIES	96	ENSGT00940000158996.g.b	ENSGT00940000165452.b	ENSGT00940000158607.n	ENSGT01100000263540.B.d.b	ENSGT00720000108860	ENSGT00940000160296.f	ENSGT00940000155860.a.e.b.b	ENSGT00940000155860.a.e.a	ENSGT00940000154314.b.a	ENSGT00950000182847.b.b.b.d	ENSGT00940000164226.a.a.f	ENSGT00940000159598.c	ENSGT00940000164254.a.a.b	ENSGT00390000008529.f	ENSGT00390000013287.m #17	ENSGT00940000158510.e #22	ENSGT00940000159152.d.m.b	ENSGT00940000159152.d.m.a	ENSGT00490000043388.a.d	ENSGT00390000013948.a.l	ENSGT00390000014563.b.d	ENSGT00940000155648.A.a.b.d.b	ENSGT00390000003246.e	ENSGT00940000163584.b.b.b	ENSGT00940000156732.a.b.c	ENSGT00940000160915.v.b	ENSGT00940000157038.a.b.a.b	ENSGT00530000064712.c	ENSGT00940000153710.a.f.b	ENSGT00530000064286.m.a	ENSGT00940000155151.a.a.a.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	559												KLHL22 (ENSSGRG00000044759)	tbx16 (ENSSGRG00000044757)	CABIN1 (ENSSGRG00000044751)	CEP78 (ENSSGRG00000044744) #17	ENSSGRG00000044743 #22	ENSSGRG00000044742	ENSSGRG00000044739	POLR3D (ENSSGRG00000044735)	PHYHIP (ENSSGRG00000044731)	ppp1r3c2b (ENSSGRG00000044728)	gins4 (ENSSGRG00000044717)	COX5B (ENSSGRG00000044714)	arid5a (ENSSGRG00000044698)	dbnlb (ENSSGRG00000044685)	ube2d4 (ENSSGRG00000044240)	tcf7l1b (ENSSGRG00000043827)	ENSSGRG00000043821	stambpb (ENSSGRG00000043800)	FKBP15 (ENSSGRG00000043760)	ccn1l2 (ENSSGRG00000043757)
Golden-line barbel	MODERN SPECIES	857												npy8br (ENSSGRG00000030171)	KLHL22 (ENSSGRG00000030170)	tbx16 (ENSSGRG00000030168)	CABIN1 (ENSSGRG00000030020)	ENSSGRG00000030013 #22	vps13a (ENSSGRG00000028567) #23	RNF122 (ENSSGRG00000028527)	ENSSGRG00000028526	ENSSGRG00000028525	PHYHIP (ENSSGRG00000028524)	ppp1r3c2b (ENSSGRG00000028523)	gins4 (ENSSGRG00000028522)	COX5B (ENSSGRG00000028521)	ENSSGRG00000028500	dbnlb (ENSSGRG00000028494)	ube2d4 (ENSSGRG00000028366)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	1347																ENSGT00940000158510.f.a #22	ENSGT00950000183083.a.d.b.v #23
Cyprininae_a	ANCESTRAL SPECIES	1016																ENSGT00940000158510.f.a #22	ENSGT00950000183083.a.d.b.v #23
Common carp reference	MODERN SPECIES	23	stc1 (ENSCCRG00000004251)	nkx2.7 (ENSCCRG00000010174)	ENSCCRG00000012365	slc25a37 (ENSCCRG00000048886)	entpd4 (ENSCCRG00000043971)	chmp7 (ENSCCRG00000009191)	lgi3 (ENSCCRG00000009243)	fgfr1a (ENSCCRG00000005159)	kctd9a (ENSCCRG00000057928)	ENSCCRG00000053256	npy8br (ENSCCRG00000074211)	ENSCCRG00000007551	tbx16 (ENSCCRG00000082779)	ENSCCRG00000079557	CEP78 (ENSCCRG00000061044) #17	ENSCCRG00000053282 #22	vps13a (ENSCCRG00000061422) #23	ENSCCRG00000061158	ENSCCRG00000023560	ENSCCRG00000023553	ppp1r3c2b (ENSCCRG00000023551)	ENSCCRG00000023546	gins4 (ENSCCRG00000023549)	arid5a (ENSCCRG00000070583)	dbnlb (ENSCCRG00000075106)	ube2d4 (ENSCCRG00000078165)	tcf7l1b (ENSCCRG00000070159)	ENSCCRG00000081581	ENSCCRG00000034229	ENSCCRG00000051582	ccn1l2 (ENSCCRG00000022585)
Goldfish	MODERN SPECIES	48	ENSCARG00000019956	mvb12bb (ENSCARG00000019961)	ENSCARG00000020008	ENSCARG00000020951	lgi3 (ENSCARG00000020958)	FGFR1 (ENSCARG00000021203)	kctd9a (ENSCARG00000028521)	ENSCARG00000028617	npy8br (ENSCARG00000028621)	KLHL22 (ENSCARG00000028626)	tbx16 (ENSCARG00000028633)	ENSCARG00000028645	ENSCARG00000028655	ENSCARG00000028656 #17	ENSCARG00000028660 #17	ENSCARG00000028662 #22	RNF122 (ENSCARG00000030256)	ENSCARG00000030286	POLR3D (ENSCARG00000030301)	PHYHIP (ENSCARG00000030335)	ppp1r3c2b (ENSCARG00000030339)	gins4 (ENSCARG00000030345)	COX5B (ENSCARG00000030361)	dbnlb (ENSCARG00000030381)	ube2d4 (ENSCARG00000030644)	tcf7l1b (ENSCARG00000017055)	ENSCARG00000017503	ENSCARG00000017511	FKBP15 (ENSCARG00000017540)	ccn1l2 (ENSCARG00000017689)	ENSCARG00000017698
Cyprininae	ANCESTRAL SPECIES	215	ENSGT00390000005989.b.a.b	ENSGT00940000158996.g.a	ENSGT00940000165452.b	ENSGT00940000160930.b	ENSGT00940000158607.m	ENSGT01100000263540.B.d.a	ENSGT00940000160296.e	ENSGT00940000155860.a.e.b.a	ENSGT00940000155860.b	ENSGT00940000160547	ENSGT00940000154314.b.b	ENSGT00940000164226.a.a.e	ENSGT00940000159598.d	ENSGT00940000164254.a.a.a	ENSGT00390000008529.e	ENSGT00940000158510.f.b #22	ENSGT00950000183083.a.d.b.u #23
Goldfish	MODERN SPECIES	17	ckmt1 (ENSCARG00000054749)	ENSCARG00000054882	pdia3 (ENSCARG00000054907)	ENSCARG00000055011	si:ch1073-281m9.1 (ENSCARG00000055146)	alkbh3 (ENSCARG00000055154)	hsd17b12a (ENSCARG00000055182)	api5 (ENSCARG00000055543)	PRR5L (ENSCARG00000055732)	ankrd39 (ENSCARG00000055818)	ENSCARG00000055832	kctd9a (ENSCARG00000055838)	npy8br (ENSCARG00000056067)	tbx16 (ENSCARG00000056085)	CABIN1 (ENSCARG00000056207)	ENSCARG00000059343 #22	vps13a (ENSCARG00000059454) #23	vps13a (ENSCARG00000062609) #23	ENSCARG00000062775	ENSCARG00000062780	grm8b (ENSCARG00000062791)	znf800a (ENSCARG00000063017)	ENSCARG00000063032	dldh (ENSCARG00000063076)	sema7a (ENSCARG00000063473)	commd4 (ENSCARG00000063505)	neil1 (ENSCARG00000063580)	ENSCARG00000063605	CA12 (ENSCARG00000063706)	CA12 (ENSCARG00000063767)	ENSCARG00000063810
Cyprininae_a	ANCESTRAL SPECIES	214	ENSGT00390000005989.b.a.b	ENSGT00940000158996.g.a	ENSGT00940000160930.a	ENSGT00940000158607.m	ENSGT01100000263540.B.d.a	ENSGT00940000160296.e	ENSGT00940000155860.a.e.b.a	ENSGT00940000155860.b	ENSGT00940000160547	ENSGT00940000154314.b.b	ENSGT00940000164226.a.a.e	ENSGT00940000159598.d	ENSGT00940000164254.a.a.a	ENSGT00390000008529.e	ENSGT00390000013287.n #17	ENSGT00940000158510.f.b #22	ENSGT00950000183083.a.d.b.u #23
Common carp reference	MODERN SPECIES	17	stc1 (ENSCCRG00000060953)	nkx2.7 (ENSCCRG00000053768)	nkx3-1 (ENSCCRG00000052651)	slc25a37 (ENSCCRG00000061036)	entpd4 (ENSCCRG00000023329)	lgi3 (ENSCCRG00000055167)	fgfr1a (ENSCCRG00000033246)	ENSCCRG00000065151	ankrd39 (ENSCCRG00000072968)	kctd9a (ENSCCRG00000056054)	npy8br (ENSCCRG00000055247)	ENSCCRG00000062067	tbx16 (ENSCCRG00000007555)	ENSCCRG00000039056	CEP78 (ENSCCRG00000043030) #17	ENSCCRG00000006968 #22	vps13a (ENSCCRG00000077561) #23	ENSCCRG00000082861	ENSCCRG00000065869	ENSCCRG00000017598	ENSCCRG00000025452	ppp1r3c2b (ENSCCRG00000037668)	gins4 (ENSCCRG00000037672)	ENSCCRG00000073741	arid5a (ENSCCRG00000062873)	dbnlb (ENSCCRG00000064511)	ube2d4 (ENSCCRG00000053646)	tcf7l1b (ENSCCRG00000022613)	ENSCCRG00000081010	stambpb (ENSCCRG00000051595)	ENSCCRG00000051626
Zebrafish	MODERN SPECIES	23	DISP3 (ENSDARG00000036999)	bmp1a (ENSDARG00000028071)	kansl3 (ENSDARG00000029556)	si:ch211-198o12.4 (ENSDARG00000068098)	chmp7 (ENSDARG00000041362)	lgi3 (ENSDARG00000041358)	fgfr1a (ENSDARG00000011027)	ankrd39 (ENSDARG00000041350)	kctd9a (ENSDARG00000021209)	npy8br (ENSDARG00000005780)	KLHL22 (ENSDARG00000088807)	tbx16 (ENSDARG00000007329)	ENSDARG00000094868	CABIN1 (ENSDARG00000079326)	CEP78 (ENSDARG00000039229) #17	ENSDARG00000025013 #22	vps13a (ENSDARG00000039225) #23	tcf7l1b (ENSDARG00000007369)	ube2d4 (ENSDARG00000015057)	dbnlb (ENSDARG00000016016)	arid5a (ENSDARG00000077120)	COX5B (ENSDARG00000113254)	gins4 (ENSDARG00000016044)	ppp1r3c2b (ENSDARG00000015657)	phyhip (ENSDARG00000116497)	ENSDARG00000102758	RNF122 (ENSDARG00000102075)	ENSDARG00000102599	stambpb (ENSDARG00000086906)	ENSDARG00000099294	ccn1l2 (ENSDARG00000099985)
Clupeiformes	ANCESTRAL SPECIES	182	ENSGT00950000183185.c.a.a.bb.a.b	ENSGT00390000001901	ENSGT00390000007992	ENSGT00940000156009.A.c	ENSGT00940000155760.u	ENSGT00950000182859.A.a.a.b	ENSGT00940000169432	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT01100000265558	ENSGT00390000013287 #17	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00920000149159 #30	ENSGT00940000156901.B
Atlantic herring	MODERN SPECIES	23	ENSCHAG00000007080	spaw (ENSCHAG00000007069)	ENSCHAG00000007056	ENSCHAG00000007028	ank1a (ENSCHAG00000001526)	ENSCHAG00000000329	ebf2 (ENSCHAG00000000295)	ENSCHAG00000024733	zgc:136564 (ENSCHAG00000024727)	hnrnpk (ENSCHAG00000024703)	rmi1 (ENSCHAG00000024700)	NTRK2 (ENSCHAG00000024697)	agtpbp1 (ENSCHAG00000024424)	naa35 (ENSCHAG00000024374)	CEP78 (ENSCHAG00000024356) #17	GNA14 (ENSCHAG00000024349) #22	vps13a (ENSCHAG00000021136) #23	ENSCHAG00000021009	FOXB2 (ENSCHAG00000020979) #24	rfk (ENSCHAG00000020946) #28	pcsk5b (ENSCHAG00000019210) #29	ENSCHAG00000019164	RFESD (ENSCHAG00000019160)	ENSCHAG00000019078	ostf1 (ENSCHAG00000019000) #30	ENSCHAG00000018984	slc20a2 (ENSCHAG00000018853)	lipg (ENSCHAG00000018787)	mthfd2l (ENSCHAG00000018748)	ENSCHAG00000018687	ENSCHAG00000018514
Euteleosteomorpha	ANCESTRAL SPECIES	112	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00980000203448	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000013287 #17	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000171049	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00940000164899
Protacanthopterygii	ANCESTRAL SPECIES	16	ENSGT00950000182928.A.b	ENSGT00940000164250	ENSGT00940000156871.o	ENSGT01090000260294	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000013287 #17	ENSGT00940000162569.a.c	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00920000149159 #30	ENSGT00940000159384 #31	ENSGT00940000164899	ENSGT00390000005323 #32	ENSGT00940000158164 #34	ENSGT00940000157708 #35
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	31	ENSGT00950000183187.C.a	ENSGT00530000063811.B.a.c	ENSGT00940000158615.c	ENSGT00940000155182.b.y	ENSGT00940000156383.a.d	ENSGT00950000182928.A.b.t	ENSGT00940000164250.d	ENSGT00940000156871.o.e	ENSGT00940000153434.c.a.a	ENSGT00390000016025.a	ENSGT00940000155181.c.a.e	ENSGT00940000157707.h	ENSGT00390000002445.r	ENSGT01030000234934.h	ENSGT00940000162569.a.c.a	ENSGT00940000158510.g #22	ENSGT00950000183083.a.d.b.hb #23	ENSGT00940000161970.b #24	ENSGT00940000154422.c #26	ENSGT00390000015537.f #28	ENSGT00940000155770.b.a.l #29	ENSGT00390000003453.a.c.i.a	ENSGT00940000154046.b	ENSGT00940000166324.a.a	ENSGT00920000149159.i #30	ENSGT00940000159384 #31	ENSGT00940000164899.c	ENSGT00390000005323.j #32	ENSGT00940000158164.r #34	ENSGT00940000157708.h #35	ENSGT00940000154019.b.c
Salmoninae_a	ANCESTRAL SPECIES	70	ENSGT00950000183187.C.a	ENSGT00530000063811.B.a.c	ENSGT00940000158615.c	ENSGT00940000155182.b.y	ENSGT00940000156383.a.d	ENSGT00950000182928.A.b.t	ENSGT00940000164250.d	ENSGT00940000156871.o.e	ENSGT00940000153434.c.a.a	ENSGT00390000016025.a	ENSGT00940000155181.c.a.e	ENSGT00940000157707.h	ENSGT00390000002445.r	ENSGT01030000234934.h	ENSGT00940000162569.a.c.a	ENSGT00940000158510.g #22	ENSGT00950000183083.a.d.b.hb #23	ENSGT00940000161970.b #24	ENSGT00940000154422.c #26	ENSGT00390000015537.f #28	ENSGT00940000155770.b.a.l #29	ENSGT00390000003453.a.c.i.a	ENSGT00940000154046.b	ENSGT00940000166324.a.a	ENSGT00920000149159.i #30	ENSGT00940000159384 #31	ENSGT00940000164899.c	ENSGT00390000005323.j #32	ENSGT00940000158164.r #34	ENSGT00940000157708.h #35	ENSGT00940000154019.b.c
Salmo	ANCESTRAL SPECIES	58	ENSGT00950000183187.C.a	ENSGT00530000063811.B.a.c	ENSGT00940000158615.c	ENSGT00940000155182.b.y	ENSGT00940000156383.a.d	ENSGT00950000182928.A.b.t	ENSGT00940000164250.d	ENSGT00940000156871.o.e	ENSGT00940000153434.c.a.a	ENSGT00390000016025.a	ENSGT00940000155181.c.a.e	ENSGT00940000157707.h	ENSGT00390000002445.r	ENSGT01030000234934.h	ENSGT00940000162569.a.c.a	ENSGT00940000158510.g #22	ENSGT00950000183083.a.d.b.hb #23	ENSGT00940000161970.b #24	ENSGT00940000154422.c #26	ENSGT00390000015537.f #28	ENSGT00940000155770.b.a.l #29	ENSGT00390000003453.a.c.i.a	ENSGT00940000154046.b	ENSGT00940000166324.a.a	ENSGT00920000149159.i #30	ENSGT00940000159384 #31	ENSGT00940000164899.c	ENSGT00390000005323.j #32	ENSGT00940000158164.r #34	ENSGT00940000157708.h #35	ENSGT00940000154019.b.c
Atlantic salmon	MODERN SPECIES	12	gltpa (ENSSSAG00000099699)	git2 (ENSSSAG00000006552)	ankrd13a (ENSSSAG00000042478)	slc6a4b (ENSSSAG00000070612)	ENSSSAG00000042685	ENSSSAG00000104377	HNRNPK (ENSSSAG00000047380)	SLC28A3 (ENSSSAG00000047436)	NTRK2 (ENSSSAG00000048073)	ENSSSAG00000104267	ENSSSAG00000115324	agtpbp1 (ENSSSAG00000048431)	naa35 (ENSSSAG00000051897)	NATTE (ENSSSAG00000052042)	ENSSSAG00000069664	GNA14 (ENSSSAG00000069653) #22	VPS13A (ENSSSAG00000052162) #23	FOXB2 (ENSSSAG00000117157) #24	ENSSSAG00000053817 #26	RFK (ENSSSAG00000113628) #28	pcsk5b (ENSSSAG00000054014) #29	ENSSSAG00000065721	ub2r2 (ENSSSAG00000065750)	OSTF1 (ENSSSAG00000065791) #30	NMRK1 (ENSSSAG00000118048) #31	ENSSSAG00000100865	ENSSSAG00000065940	carnmt1 (ENSSSAG00000065948) #32	trpm6 (ENSSSAG00000066061) #34	rorb (ENSSSAG00000069458) #35	ENSSSAG00000065411
River trout	MODERN SPECIES	39	fam222aa (ENSSTUG00000026814)	trpv4 (ENSSTUG00000026862)	gltpa (ENSSTUG00000030690)	git2a (ENSSTUG00000030776)	ankrd13a (ENSSTUG00000035182)	slc6a4b (ENSSTUG00000035225)	ENSSTUG00000035794	hnrnpk (ENSSTUG00000038048)	SLC28A3 (ENSSTUG00000038091)	NTRK2 (ENSSTUG00000038382)	agtpbp1 (ENSSTUG00000038459)	naa35 (ENSSTUG00000039681)	ENSSTUG00000039842	ENSSTUG00000039857	ENSSTUG00000039869	GNA14 (ENSSTUG00000039910) #22	vps13a (ENSSTUG00000040068) #23	FOXB2 (ENSSTUG00000043942) #24	ENSSTUG00000043949 #26	rfk (ENSSTUG00000043979) #28	pcsk5b (ENSSTUG00000044025) #29	ubap2b (ENSSTUG00000044394)	ENSSTUG00000044446	ENSSTUG00000044461	ube2r2 (ENSSTUG00000044463)	ostf1 (ENSSTUG00000044562) #30	ENSSTUG00000044955	carnmt1 (ENSSTUG00000045003) #32	trpm6 (ENSSTUG00000045021) #34	rorb (ENSSTUG00000045150) #35	ENSSTUG00000045955
Oncorhynchus	ANCESTRAL SPECIES	12	ENSGT00940000158615.c	ENSGT00940000155182.b.y	ENSGT00940000156383.a.d	ENSGT00950000182928.A.b.t	ENSGT00940000164250.d	ENSGT00940000156871.o.e	ENSGT01090000260294.b	ENSGT00940000157487	ENSGT00940000153434.c.a.a	ENSGT00390000016025.a	ENSGT00940000155181.c.a.e	ENSGT00940000157707.h	ENSGT00390000002445.r	ENSGT01030000234934.h	ENSGT00940000162569.a.c.a	ENSGT00940000158510.g #22	ENSGT00950000183083.a.d.b.hb #23	ENSGT00940000161970.b #24	ENSGT00940000154422.c #26	ENSGT00390000015537.f #28	ENSGT00940000155770.b.a.l #29	ENSGT00390000003453.a.c.i.a	ENSGT00940000154046.b	ENSGT00940000166324.a.a	ENSGT01000000221648	ENSGT00920000149159.i #30	ENSGT00940000164899.c	ENSGT00390000005323.j #32	ENSGT00940000158164.r #34	ENSGT00940000157708.h #35	ENSGT00940000154019.b.c
Oncorhynchus_a	ANCESTRAL SPECIES	15	ENSGT00940000158615.c	ENSGT00940000155182.b.y	ENSGT00940000156383.a.d	ENSGT00950000182928.A.b.t	ENSGT00940000164250.d	ENSGT00940000156871.o.e	ENSGT01090000260294.b	ENSGT00940000157487	ENSGT00940000153434.c.a.a	ENSGT00390000016025.a	ENSGT00940000155181.c.a.e	ENSGT00940000157707.h	ENSGT00390000002445.r	ENSGT01030000234934.h	ENSGT00940000162569.a.c.a	ENSGT00940000158510.g #22	ENSGT00950000183083.a.d.b.hb #23	ENSGT00940000161970.b #24	ENSGT00940000154422.c #26	ENSGT00390000015537.f #28	ENSGT00940000155770.b.a.l #29	ENSGT00390000003453.a.c.i.a	ENSGT00940000154046.b	ENSGT00940000166324.a.a	ENSGT01000000221648	ENSGT00920000149159.i #30	ENSGT00940000164899.c	ENSGT00390000005323.j #32	ENSGT00940000158164.r #34	ENSGT00940000157708.h #35	ENSGT00940000154019.b.c
Chinook salmon	MODERN SPECIES	3	trpv4 (ENSOTSG00005037452)	gltpa (ENSOTSG00005037391)	git2a (ENSOTSG00005036784)	ankrd13a (ENSOTSG00005036694)	slc6a4b (ENSOTSG00005032650)	ENSOTSG00005032551	ENSOTSG00005041594	ENSOTSG00005041593	hnrnpk (ENSOTSG00005041590)	SLC28A3 (ENSOTSG00005041342)	NTRK2 (ENSOTSG00005041340)	agtpbp1 (ENSOTSG00005040461)	naa35 (ENSOTSG00005040441)	ENSOTSG00005040440	ENSOTSG00005040439	GNA14 (ENSOTSG00005040437) #22	vps13a (ENSOTSG00005038422) #23	FOXB2 (ENSOTSG00005038405) #24	ENSOTSG00005038404 #26	ENSOTSG00005038403 #26	rfk (ENSOTSG00005038402) #28	pcsk5b (ENSOTSG00005037626) #29	ENSOTSG00005037610	ENSOTSG00005037609	ube2r2 (ENSOTSG00005037607)	ENSOTSG00005037605	ostf1 (ENSOTSG00005037479) #30	ENSOTSG00005037473	carnmt1 (ENSOTSG00005037470) #32	ENSOTSG00005037467 #34	rorb (ENSOTSG00005037461) #35
Coho salmon	MODERN SPECIES	28	ENSOKIG00005037625	ankrd13a (ENSOKIG00005037469)	slc6a4b (ENSOKIG00005036918)	ENSOKIG00005033548	ENSOKIG00005033345	ENSOKIG00005033332	ENSOKIG00005033313	hnrnpk (ENSOKIG00005033255)	SLC28A3 (ENSOKIG00005032371)	NTRK2 (ENSOKIG00005032295)	agtpbp1 (ENSOKIG00005031995)	naa35 (ENSOKIG00005031902)	ENSOKIG00005031886	ENSOKIG00005031856	ENSOKIG00005031846	GNA14 (ENSOKIG00005031832) #22	FOXB2 (ENSOKIG00005029479) #24	ENSOKIG00005029420 #26	RFK (ENSOKIG00005029397) #28	pcsk5b (ENSOKIG00005028661) #29	ENSOKIG00005028563	ENSOKIG00005028482	ube2r2 (ENSOKIG00005028454)	ENSOKIG00005028434	ostf1 (ENSOKIG00005028277) #30	ENSOKIG00005028225	carnmt1 (ENSOKIG00005028212) #32	trpm6 (ENSOKIG00005027414) #34	rorb (ENSOKIG00005027235) #35	MFSD3 (ENSOKIG00005027195)	anxa1a (ENSOKIG00005026548) #36
Huchen	MODERN SPECIES	405														ENSHHUG00000009798	ENSHHUG00000009621	GNA14 (ENSHHUG00000009614) #22	vps13a (ENSHHUG00000009444) #23	FOXB2 (ENSHHUG00000009428) #24	ENSHHUG00000009325 #26	rfk (ENSHHUG00000009123) #28	pcsk5b (ENSHHUG00000008712) #29	ubap2b (ENSHHUG00000008615)	ENSHHUG00000008607	ENSHHUG00000008592	ube2r2 (ENSHHUG00000008563)	ENSHHUG00000008547	ostf1 (ENSHHUG00000008428) #30	ENSHHUG00000008404	carnmt1 (ENSHHUG00000008396) #32	trpm6 (ENSHHUG00000008280) #34	rorb (ENSHHUG00000008142) #35
Salmoninae	ANCESTRAL SPECIES	138	ENSGT00950000182928.A.b.s	ENSGT00940000164250.c	ENSGT00940000156871.o.f	ENSGT01090000260294.a	ENSGT01090000260294.b	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a.b	ENSGT00940000161055	ENSGT00940000155181.c.a.f	ENSGT00940000157707.g	ENSGT00390000002445.q	ENSGT00530000063675.b	ENSGT00390000013287 #17	ENSGT00940000162569.a.c.b	ENSGT00940000158510.h #22	ENSGT00950000183083.a.d.b.ib #23	ENSGT00940000161259.A	ENSGT00940000161970.a #24	ENSGT00940000159331.a	ENSGT00390000015537.e #28	ENSGT00940000155770.b.a.k #29	ENSGT00390000003453.a.c.i.b	ENSGT00940000166324.a.b	ENSGT00390000018225.B.b	ENSGT00900000141068.fb	ENSGT00920000149159.j #30	ENSGT00940000164899.d	ENSGT00390000005323.i #32	ENSGT00940000158164.q #34	ENSGT00940000157708.g #35
Salmoninae_a	ANCESTRAL SPECIES	10	ENSGT00950000182928.A.b.s	ENSGT00940000164250.c	ENSGT00940000156871.o.f	ENSGT01090000260294.a	ENSGT01090000260294.b	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a.b	ENSGT00940000161055	ENSGT00940000155181.c.a.f	ENSGT00940000157707.g	ENSGT00390000002445.q	ENSGT00530000063675.b	ENSGT00390000013287 #17	ENSGT00940000162569.a.c.b	ENSGT00940000158510.h #22	ENSGT00950000183083.a.d.b.ib #23	ENSGT00940000161259.A	ENSGT00940000161970.a #24	ENSGT00940000159331.a	ENSGT00390000015537.e #28	ENSGT00940000155770.b.a.k #29	ENSGT00390000003453.a.c.i.b	ENSGT00940000166324.a.b	ENSGT00390000018225.B.b	ENSGT00900000141068.fb	ENSGT00920000149159.j #30	ENSGT00940000164899.d	ENSGT00390000005323.i #32	ENSGT00940000158164.q #34	ENSGT00940000157708.g #35
Oncorhynchus	ANCESTRAL SPECIES	58	ENSGT01070000253909	ENSGT00940000156383.a.c	ENSGT00950000182928.A.b.s	ENSGT00940000164250.c	ENSGT00940000156871.o.f	ENSGT01090000260294.a	ENSGT00390000002374	ENSGT00940000153434.c.a.b	ENSGT00940000161055	ENSGT00940000155181.c.a.f	ENSGT00940000157707.g	ENSGT00390000002445.q	ENSGT00530000063675.b	ENSGT00390000013287 #17	ENSGT00940000162569.a.c.b	ENSGT00940000158510.h #22	ENSGT00950000183083.a.d.b.ib #23	ENSGT00940000161259.A	ENSGT00940000161970.a #24	ENSGT00940000159331.a	ENSGT00390000015537.e #28	ENSGT00940000155770.b.a.k #29	ENSGT00390000003453.a.c.i.b	ENSGT00940000166324.a.b	ENSGT00390000018225.B.b	ENSGT00900000141068.fb	ENSGT00920000149159.j #30	ENSGT00940000164899.d	ENSGT00940000158164.q #34	ENSGT00940000157708.g #35	ENSGT01000000214993.b.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	61	ENSGT01070000253909.c	ENSGT00940000156383.a.c	ENSGT00950000182928.A.b.s	ENSGT00940000164250.c	ENSGT00940000156871.o.f	ENSGT01090000260294.a	ENSGT00390000002374	ENSGT00940000153434.c.a.b	ENSGT00940000161055	ENSGT00940000155181.c.a.f	ENSGT00940000157707.g	ENSGT00390000002445.q	ENSGT00530000063675.b	ENSGT00390000013287 #17	ENSGT00940000162569.a.c.b	ENSGT00940000158510.h #22	ENSGT00950000183083.a.d.b.ib #23	ENSGT00940000161259.A	ENSGT00940000161970.a #24	ENSGT00940000159331.a	ENSGT00390000015537.e #28	ENSGT00940000155770.b.a.k #29	ENSGT00390000003453.a.c.i.b	ENSGT00940000166324.a.b	ENSGT00390000018225.B.b	ENSGT00900000141068.fb	ENSGT00920000149159.j #30	ENSGT00940000164899.d	ENSGT00940000158164.q #34	ENSGT00940000157708.g #35	ENSGT01000000214993.b.a.b
Coho salmon	MODERN SPECIES	22	slc6a4b (ENSOKIG00005016096)	SGSM1 (ENSOKIG00005017770)	ENSOKIG00005019583	ENSOKIG00005019597	zgc:136564 (ENSOKIG00005019608)	hnrnpk (ENSOKIG00005019629)	rmi1 (ENSOKIG00005019704)	rmi1 (ENSOKIG00005019707)	ENSOKIG00005019715	NTRK2 (ENSOKIG00005019723)	agtpbp1 (ENSOKIG00005019795)	naa35 (ENSOKIG00005020567)	GOLM1 (ENSOKIG00005020600)	CEP78 (ENSOKIG00005020610) #17	ENSOKIG00005020619	GNA14 (ENSOKIG00005000099) #22	vps13a (ENSOKIG00005000249) #23	ENSOKIG00005000281	FOXB2 (ENSOKIG00005000283) #24	ENSOKIG00005000290	rfk (ENSOKIG00005000305) #28	pcsk5b (ENSOKIG00005000668) #29	ENSOKIG00005001377	ENSOKIG00005001394	RFESD (ENSOKIG00005001409)	ENSOKIG00005001418	ENSOKIG00005001424	ENSOKIG00005001490 #30	ENSOKIG00005001646	trpm6 (ENSOKIG00005001930) #34	rorb (ENSOKIG00005004003) #35
Rainbow trout	MODERN SPECIES	27	ankrd13a (ENSOMYG00000007890)	slc6a4b (ENSOMYG00000008320)	ENSOMYG00000009313	ENSOMYG00000010888	ENSOMYG00000010902	zgc:136564 (ENSOMYG00000010923)	hnrnpk (ENSOMYG00000011000)	rmi1 (ENSOMYG00000011061)	NTRK2 (ENSOMYG00000011075)	ENSOMYG00000068918	agtpbp1 (ENSOMYG00000011248)	naa35 (ENSOMYG00000013141)	GOLM1 (ENSOMYG00000056203)	CEP78 (ENSOMYG00000013244) #17	ENSOMYG00000013258	GNA14 (ENSOMYG00000013268) #22	vps13a (ENSOMYG00000013638) #23	ENSOMYG00000052361	ENSOMYG00000015480	FOXB2 (ENSOMYG00000015490) #24	RFK (ENSOMYG00000015499) #28	pcsk5b (ENSOMYG00000015881) #29	ENSOMYG00000021640	ENSOMYG00000021690	ENSOMYG00000053603	ENSOMYG00000021708	ENSOMYG00000075846	ENSOMYG00000021780 #30	ENSOMYG00000022070	trpm6 (ENSOMYG00000022500) #34	ENSOMYG00000024370 #35
Salmo	ANCESTRAL SPECIES		ENSGT00940000156383.a.c	ENSGT00950000182928.A.b.s	ENSGT00940000164250.c	ENSGT00940000156871.o.f	ENSGT01090000260294.a	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a.b	ENSGT00940000161055	ENSGT00940000155181.c.a.f	ENSGT00940000157707.g	ENSGT00390000002445.q	ENSGT00530000063675.b	ENSGT00390000013287 #17	ENSGT00940000162569.a.c.b	ENSGT00940000158510.h #22	ENSGT00950000183083.a.d.b.ib #23	ENSGT00940000161259.A	ENSGT00940000161970.a #24	ENSGT00940000159331.a	ENSGT00390000015537.e #28	ENSGT00940000155770.b.a.k #29	ENSGT00390000003453.a.c.i.b	ENSGT00940000166324.a.b	ENSGT00390000018225.B.b	ENSGT00900000141068.fb	ENSGT00920000149159.j #30	ENSGT00940000164899.d	ENSGT00390000005323.i #32	ENSGT00940000158164.q #34	ENSGT00940000157708.g #35
Atlantic salmon	MODERN SPECIES	16	slc6a4b (ENSSSAG00000042549)	ENSSSAG00000070410	KIF27 (ENSSSAG00000089720)	ENSSSAG00000070383	ENSSSAG00000109473	ENSSSAG00000116714	zgc:136564 (ENSSSAG00000070375)	hnrnpk (ENSSSAG00000070356)	rmi1 (ENSSSAG00000097785)	NTRK2 (ENSSSAG00000070303)	agtpbp1 (ENSSSAG00000069778)	naa35 (ENSSSAG00000069711)	ENSSSAG00000069701	CEP78 (ENSSSAG00000118150) #17	ENSSSAG00000088078	GNA14 (ENSSSAG00000094623) #22	ENSSSAG00000104804	vps13a (ENSSSAG00000069212) #23	ENSSSAG00000094683	FOXB2 (ENSSSAG00000069177) #24	ENSSSAG00000069176	RFK (ENSSSAG00000069174) #28	pcsk5b (ENSSSAG00000068019) #29	ENSSSAG00000067922	ENSSSAG00000100286	ENSSSAG00000067906	glrx1 (ENSSSAG00000067904)	ostf1 (ENSSSAG00000067882) #30	ENSSSAG00000099703	ENSSSAG00000067877	carnmt1 (ENSSSAG00000086810) #32
River trout	MODERN SPECIES	19	git2a (ENSSTUG00000014522)	ankrd13a (ENSSTUG00000014378)	slc6a4b (ENSSTUG00000014340)	ENSSTUG00000014338	SGSM1 (ENSSTUG00000013338)	ENSSTUG00000013277	KIF27 (ENSSTUG00000013248)	zgc:136564 (ENSSTUG00000013235)	hnrnpk (ENSSTUG00000013176)	rmi1 (ENSSTUG00000013155)	NTRK2 (ENSSTUG00000024717)	agtpbp1 (ENSSTUG00000023564)	naa35 (ENSSTUG00000023484)	GOLM1 (ENSSTUG00000023460)	ENSSTUG00000023373	GNA14 (ENSSTUG00000023369) #22	vps13a (ENSSTUG00000020651) #23	FOXB2 (ENSSTUG00000020558) #24	rfk (ENSSTUG00000020531) #28	pcsk5b (ENSSTUG00000019532) #29	ENSSTUG00000019413	ube2r2 (ENSSTUG00000019343)	ENSSTUG00000019316	glrx (ENSSTUG00000019307)	ostf1 (ENSSTUG00000019200) #30	ENSSTUG00000019185	carnmt1 (ENSSTUG00000019155) #32	trpm6 (ENSSTUG00000017556) #34	rorb (ENSSTUG00000016996) #35	ENSSTUG00000016982	MFSD3 (ENSSTUG00000016973)
Huchen	MODERN SPECIES	729	ankrd13a (ENSHHUG00000010963)	slc6a4b (ENSHHUG00000010993)	SGSM1 (ENSHHUG00000011159)	ENSHHUG00000011303	zgc:136564 (ENSHHUG00000011339)	hnrnpk (ENSHHUG00000011353)	ENSHHUG00000011398	ENSHHUG00000011406	ENSHHUG00000011416	NTRK2 (ENSHHUG00000011420)	agtpbp1 (ENSHHUG00000011428)	naa35 (ENSHHUG00000011542)	GOLM1 (ENSHHUG00000011645)	CEP78 (ENSHHUG00000011651) #17	ENSHHUG00000011660	ENSHHUG00000011688 #22	vps13a (ENSHHUG00000011698) #23
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	12	SGSM1 (ENSELUG00000002879)	ENSELUG00000024729	KIF27 (ENSELUG00000001218)	zgc:136564 (ENSELUG00000002827)	hnrnpk (ENSELUG00000002820)	rmi1 (ENSELUG00000002801)	SLC28A3 (ENSELUG00000002789)	NTRK2 (ENSELUG00000002774)	agtpbp1 (ENSELUG00000002764)	naa35 (ENSELUG00000002742)	GOLM1 (ENSELUG00000002723)	CEP78 (ENSELUG00000002712) #17	ENSELUG00000027426	ENSELUG00000002705	GNA14 (ENSELUG00000026029) #22	ENSELUG00000027402 #22	ENSELUG00000002663 #23	ENSELUG00000002650	FOXB2 (ENSELUG00000002644) #24	ENSELUG00000002629 #26	rfk (ENSELUG00000002612) #28	pcsk5b (ENSELUG00000001226) #29	ubap2b (ENSELUG00000002582)	ALOXE3 (ENSELUG00000002555)	RFESD (ENSELUG00000002370)	GLRX1 (ENSELUG00000027309)	ostf1 (ENSELUG00000002495) #30	nmrk1 (ENSELUG00000002468) #31	serpina7 (ENSELUG00000002431)	carnmt1 (ENSELUG00000002426) #32	trpm6 (ENSELUG00000002412) #34
Northern pike	MODERN SPECIES	12	tlr22 (ENSELUG00000002846)	SGSM1 (ENSELUG00000002879)	ENSELUG00000024729	KIF27 (ENSELUG00000001218)	zgc:136564 (ENSELUG00000002827)	hnrnpk (ENSELUG00000002820)	rmi1 (ENSELUG00000002801)	SLC28A3 (ENSELUG00000002789)	NTRK2 (ENSELUG00000002774)	agtpbp1 (ENSELUG00000002764)	naa35 (ENSELUG00000002742)	GOLM1 (ENSELUG00000002723)	CEP78 (ENSELUG00000002712) #17	ENSELUG00000027426	ENSELUG00000002705	GNA14 (ENSELUG00000026029) #22	ENSELUG00000027402 #22	ENSELUG00000002663 #23	ENSELUG00000002650	FOXB2 (ENSELUG00000002644) #24	ENSELUG00000002629 #26	rfk (ENSELUG00000002612) #28	pcsk5b (ENSELUG00000001226) #29	ubap2b (ENSELUG00000002582)	ALOXE3 (ENSELUG00000002555)	RFESD (ENSELUG00000002370)	GLRX1 (ENSELUG00000027309)	ostf1 (ENSELUG00000002495) #30	nmrk1 (ENSELUG00000002468) #31	serpina7 (ENSELUG00000002431)	carnmt1 (ENSELUG00000002426) #32
Acanthomorphata	ANCESTRAL SPECIES	48	ENSGT00530000063675.b	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000171049	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Euacanthomorphacea	ANCESTRAL SPECIES	14	ENSGT00530000063675.b	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000171049	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147
Pinecone sodierfish	MODERN SPECIES	23	GOLM1 (ENSMMDG00005024665)	lmbrd2a (ENSMMDG00005024664)	slc1a3a (ENSMMDG00005024663)	nipbla (ENSMMDG00005024662)	ndc80 (ENSMMDG00005024661)	GDNF (ENSMMDG00005024660)	EGFLAM (ENSMMDG00005024659)	opn4xb (ENSMMDG00005024658)	pdlim5a (ENSMMDG00005024657)	bmpr1ba (ENSMMDG00005024654)	UNC5C (ENSMMDG00005024653)	STPG2 (ENSMMDG00005024652)	bri3bp (ENSMMDG00005024651)	wdr31 (ENSMMDG00005024650)	ENSMMDG00005024649	GNA14 (ENSMMDG00005024648) #22	vps13a (ENSMMDG00005024582) #23	POGK (ENSMMDG00005024182)	FOXB2 (ENSMMDG00005024168) #24	ENSMMDG00005024106 #26	ENSMMDG00005023984	rfk (ENSMMDG00005023959) #28	pcsk5b (ENSMMDG00005022541) #29	ubap2b (ENSMMDG00005021919)	ENSMMDG00005021880	gtf2h3 (ENSMMDG00005021730)	psmd9 (ENSMMDG00005021672)	ENSMMDG00005021657	ENSMMDG00005021629	mlxip (ENSMMDG00005021578)	ENSMMDG00005021519
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00530000063675.b	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000171049	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147
Tiger tail seahorse	MODERN SPECIES	270	ENSHCOG00000017820	ENSHCOG00000017811	PDE4D (ENSHCOG00000017800)	ENSHCOG00000017758	rab3c (ENSHCOG00000017745)	si:dkey-190g11.3 (ENSHCOG00000017727)	plk2b (ENSHCOG00000017701)	mier3b (ENSHCOG00000017694)	UNC5C (ENSHCOG00000017660)	ENSHCOG00000017605	ENSHCOG00000017543	bri3bp (ENSHCOG00000017539)	wdr31 (ENSHCOG00000017528)	tfa (ENSHCOG00000017505)	ENSHCOG00000017497	GNA14 (ENSHCOG00000017473) #22	ENSHCOG00000017462	ENSHCOG00000017448 #23	ENSHCOG00000017421 #23	ENSHCOG00000017380	ENSHCOG00000017368 #26	ENSHCOG00000017303	tmem167a (ENSHCOG00000017265)	ENSHCOG00000017256	ENSHCOG00000017247	hapln1a (ENSHCOG00000017205)	EDIL3 (ENSHCOG00000017169)	cox7c (ENSHCOG00000017118)	RASA1 (ENSHCOG00000017107)	ccnh (ENSHCOG00000017060)
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000171049	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
Tetraodontidae	ANCESTRAL SPECIES	12	ENSGT00390000018651.b	ENSGT00940000155464.a.b.a	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.c.b	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000178770	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000164360.A	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370	ENSGT00940000158691
Tetraodon	MODERN SPECIES	3	naa35 (ENSTNIG00000015794)	LMBRD2 (ENSTNIG00000015795)	ENSTNIG00000015796	ndc80 (ENSTNIG00000015797)	ENSTNIG00000015798	EGFLAM (ENSTNIG00000015799)	ENSTNIG00000015800	opn4xb (ENSTNIG00000015801)	pdlim5a (ENSTNIG00000015802)	bmpr1ba (ENSTNIG00000015803)	UNC5C (ENSTNIG00000015804)	STPG2 (ENSTNIG00000015805)	bri3bp (ENSTNIG00000015806)	wdr31 (ENSTNIG00000015807)	ENSTNIG00000015808	GNA14 (ENSTNIG00000015809) #22	vps13a (ENSTNIG00000015810) #23	FOXB2 (ENSTNIG00000015811) #24	ENSTNIG00000015812 #26	fut9b.3 (ENSTNIG00000015813)	ENSTNIG00000015814	rfk (ENSTNIG00000015815) #28	pcsk5b (ENSTNIG00000015816) #29	ubap2b (ENSTNIG00000015817)	ENSTNIG00000015818	gtf2h3 (ENSTNIG00000015819)	psmd9 (ENSTNIG00000015820)	ENSTNIG00000015821	mlxip (ENSTNIG00000015822)	CLIP1 (ENSTNIG00000015823)	zcchc8 (ENSTNIG00000015824)
Fugu	MODERN SPECIES	13	ndc80 (ENSTRUG00000006903)	ENSTRUG00000021031	EGFLAM (ENSTRUG00000006503)	si:dkey-251i10.2 (ENSTRUG00000032943)	opn4xb (ENSTRUG00000030465)	pdlim5a (ENSTRUG00000005717)	EGFLAM (ENSTRUG00000026754)	si:dkey-251i10.2 (ENSTRUG00000028391)	opn4xb (ENSTRUG00000006369)	bmpr1ba (ENSTRUG00000005555)	UNC5C (ENSTRUG00000004833)	ENSTRUG00000020458	bri3bp (ENSTRUG00000028808)	wdr31 (ENSTRUG00000004563)	ENSTRUG00000020151	GNA14 (ENSTRUG00000025488) #22	vps13a (ENSTRUG00000002310) #23	ENSTRUG00000033277	FOXB2 (ENSTRUG00000025084) #24	ENSTRUG00000002086 #26	ENSTRUG00000028306	ENSTRUG00000021452	rfk (ENSTRUG00000025821) #28	ENSTRUG00000031738	pcsk5b (ENSTRUG00000004165) #29	ubap2b (ENSTRUG00000005653)	ENSTRUG00000024938	gtf2h3 (ENSTRUG00000006621)	psmd9 (ENSTRUG00000025271)	ENSTRUG00000006980	mlxip (ENSTRUG00000007381)
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	737													bri3bp (ENSLBEG00000006788)	wdr31 (ENSLBEG00000006766)	ENSLBEG00000006711	GNA14 (ENSLBEG00000006678) #22	vps13a (ENSLBEG00000006413) #23	ENSLBEG00000006363
Ballan wrasse	MODERN SPECIES	1614															ENSLBEG00000007640	ENSLBEG00000007617 #22	ENSLBEG00000007575
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
European seabass	MODERN SPECIES	13	ENSDLAG00005017800	slc1a3a (ENSDLAG00005017623)	lmbrd2a (ENSDLAG00005017640)	nipbla (ENSDLAG00005017440)	ENSDLAG00005017361	ENSDLAG00005017021	ENSDLAG00005016995	opn4xb (ENSDLAG00005016964)	pdlim5a (ENSDLAG00005016895)	bmpr1ba (ENSDLAG00005016706)	UNC5C (ENSDLAG00005014696)	STPG2 (ENSDLAG00005026712)	ENSDLAG00005026396	ENSDLAG00005014561	ENSDLAG00005029740	GNA14 (ENSDLAG00005031579) #22	VPS13A (ENSDLAG00005009758) #23	ENSDLAG00005009614	FOXB2 (ENSDLAG00005026924) #24	ENSDLAG00005033740 #26	ENSDLAG00005009506	ENSDLAG00005034628	pcsk5b (ENSDLAG00005008447) #29	RFK (ENSDLAG00005027596) #28	ENSDLAG00005029652	ENSDLAG00005033165	ENSDLAG00005033049	ENSDLAG00005008264	ENSDLAG00005008258	ENSDLAG00005008246	ENSDLAG00005029344
Large yellow croaker	MODERN SPECIES	2	GOLM1 (ENSLCRG00005011241)	lmbrd2a (ENSLCRG00005011200)	slc1a3a (ENSLCRG00005011144)	nipbla (ENSLCRG00005011126)	ndc80 (ENSLCRG00005011120)	GDNF (ENSLCRG00005011117)	EGFLAM (ENSLCRG00005011111)	opn4xb (ENSLCRG00005011105)	pdlim5a (ENSLCRG00005011100)	bmpr1ba (ENSLCRG00005010657)	UNC5C (ENSLCRG00005008563)	STPG2 (ENSLCRG00005008548)	bri3bp (ENSLCRG00005008546)	wdr31 (ENSLCRG00005008543)	ENSLCRG00005008541	GNA14 (ENSLCRG00005008540) #22	vps13a (ENSLCRG00005007710) #23	ENSLCRG00005007698	FOXB2 (ENSLCRG00005007696) #24	ENSLCRG00005007695	ENSLCRG00005007691 #26	ENSLCRG00005007688	ENSLCRG00005007687	rfk (ENSLCRG00005007686) #28	pcsk5b (ENSLCRG00005003470) #29	ubap2b (ENSLCRG00005003420)	ENSLCRG00005003418	RFESD (ENSLCRG00005003416)	gtf2h3 (ENSLCRG00005003409)	psmd9 (ENSLCRG00005003406)	ENSLCRG00005003405
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES	19	GOLM1 (ENSSAUG00010010555)	lmbrd2a (ENSSAUG00010010559)	slc1a3a (ENSSAUG00010010562)	nipbla (ENSSAUG00010010563)	ndc80 (ENSSAUG00010010566)	GDNF (ENSSAUG00010010567)	EGFLAM (ENSSAUG00010010573)	opn4xb (ENSSAUG00010010598)	pdlim5a (ENSSAUG00010010612)	bmpr1ba (ENSSAUG00010010627)	UNC5C (ENSSAUG00010011075)	STPG2 (ENSSAUG00010011103)	bri3bp (ENSSAUG00010011107)	wdr31 (ENSSAUG00010011108)	ENSSAUG00010011111	GNA14 (ENSSAUG00010011113) #22	vps13a (ENSSAUG00010011158) #23	ENSSAUG00010011518	FOXB2 (ENSSAUG00010011521) #24	ENSSAUG00010011524	ENSSAUG00010011526	ENSSAUG00010011531 #26	ENSSAUG00010011541 #26	ENSSAUG00010011617	ENSSAUG00010011622	ENSSAUG00010011623 #27	ENSSAUG00010011626	rfk (ENSSAUG00010011627) #28	pcsk5b (ENSSAUG00010011643) #29	ubap2b (ENSSAUG00010012264)	ENSSAUG00010012269
Gilthead seabream	MODERN SPECIES	3	btc (ENSSAUG00010009435)	gng10 (ENSSAUG00010009434)	nxnl2 (ENSSAUG00010009433)	ENSSAUG00010009431	CSGALNACT1 (ENSSAUG00010009429)	PLPP1 (ENSSAUG00010009422)	mtrex (ENSSAUG00010009164)	DHX29 (ENSSAUG00010007319)	ENSSAUG00010007275	GOLPH3 (ENSSAUG00010007273)	ENSSAUG00010006404	kcmf1 (ENSSAUG00010006396)	ntrk2b (ENSSAUG00010006394)	hnrpkl (ENSSAUG00010006229)	ENSSAUG00010006214 #19	ENSSAUG00010006208 #22	prune2 (ENSSAUG00010006201) #26	ENSSAUG00010006192 #29	ENSSAUG00010006188	zgc:73226 (ENSSAUG00010006180)	thbs4b (ENSSAUG00010001952)	ENSSAUG00010001870	zgc:122979 (ENSSAUG00010001865)	hwa (ENSSAUG00010001860)	atp5fa1 (ENSSAUG00010001552)	zgc:77838 (ENSSAUG00010001499)	RNF165 (ENSSAUG00010021687)	LOXHD1 (ENSSAUG00010021665)	st8sia5 (ENSSAUG00010021660)	rpl37 (ENSSAUG00010021655)	PTGS1 (ENSSAUG00010021005)
Perciformes	ANCESTRAL SPECIES	6	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
Perciformes_a	ANCESTRAL SPECIES	4	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370	ENSGT00940000158691	ENSGT00390000008994
Channel bull blenny	MODERN SPECIES	23	slc1a3a (ENSCGOG00000005366)	nipbla (ENSCGOG00000003956)	ndc80 (ENSCGOG00000003868)	ENSCGOG00000003852	EGFLAM (ENSCGOG00000022308)	si:dkey-251i10.2 (ENSCGOG00000022303)	opn4xb (ENSCGOG00000022297)	ENSCGOG00000022291	pdlim5a (ENSCGOG00000022287)	bmpr1ba (ENSCGOG00000021984)	UNC5C (ENSCGOG00000021173)	STPG2 (ENSCGOG00000021150)	bri3bp (ENSCGOG00000021148)	wdr31 (ENSCGOG00000021145)	ENSCGOG00000021049	GNA14 (ENSCGOG00000020988) #22	vps13a (ENSCGOG00000020350) #23	ENSCGOG00000020296	FOXB2 (ENSCGOG00000020294) #24	ENSCGOG00000020284 #26	rfk (ENSCGOG00000020280) #28	ENSCGOG00000020278	ENSCGOG00000020269	ENSCGOG00000020261	pcsk5b (ENSCGOG00000019509) #29	ENSCGOG00000019471	RFESD (ENSCGOG00000019469)	gtf2h3 (ENSCGOG00000019461)	psmd9 (ENSCGOG00000019467)	ENSCGOG00000019460	CFAP251 (ENSCGOG00000019456)
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	23	GOLM1 (ENSSLUG00000017025)	lmbrd2a (ENSSLUG00000016951)	slc1a3a (ENSSLUG00000016889)	nipbla (ENSSLUG00000016675)	ndc80 (ENSSLUG00000016640)	ENSSLUG00000016629	EGFLAM (ENSSLUG00000016521)	opn4xb (ENSSLUG00000016496)	pdlim5a (ENSSLUG00000016430)	bmpr1ba (ENSSLUG00000016057)	UNC5C (ENSSLUG00000014167)	STPG2 (ENSSLUG00000014068)	bri3bp (ENSSLUG00000014059)	wdr31 (ENSSLUG00000014050)	ENSSLUG00000014042	GNA14 (ENSSLUG00000014035) #22	vps13a (ENSSLUG00000012661) #23	ENSSLUG00000012528	FOXB2 (ENSSLUG00000012524) #24	ENSSLUG00000012506 #26	ENSSLUG00000012488	rfk (ENSSLUG00000012482) #28	pcsk5b (ENSSLUG00000011028) #29	ENSSLUG00000010929	ENSSLUG00000010919	RFESD (ENSSLUG00000010917)	gtf2h3 (ENSSLUG00000010891)	psmd9 (ENSSLUG00000010882)	ENSSLUG00000010877	CFAP251 (ENSSLUG00000010867)	mlxip (ENSSLUG00000010863)
Pike perch	MODERN SPECIES	33	rxfp3 (ENSSLUG00000015090)	btc (ENSSLUG00000015098)	gng10 (ENSSLUG00000015109)	nxnl2 (ENSSLUG00000015117)	CSGALNACT1 (ENSSLUG00000015121)	PLPP1 (ENSSLUG00000015127)	mtrex (ENSSLUG00000015150)	DHX29 (ENSSLUG00000015593)	ENSSLUG00000015725	GOLPH3 (ENSSLUG00000015750)	ENSSLUG00000015857	kcmf1 (ENSSLUG00000016963)	ntrk2b (ENSSLUG00000016986)	hnrpkl (ENSSLUG00000017016)	ENSSLUG00000017076 #19	ENSSLUG00000017079 #22	prune2 (ENSSLUG00000017092) #26	ENSSLUG00000017129 #29	ENSSLUG00000017225	zgc:73226 (ENSSLUG00000005332)	thbs4b (ENSSLUG00000005766)	ENSSLUG00000012975	zgc:122979 (ENSSLUG00000013034)	hwa (ENSSLUG00000013038)	atp5fa1 (ENSSLUG00000013047)	zgc:77838 (ENSSLUG00000013069)	RNF165 (ENSSLUG00000013083)	LOXHD1 (ENSSLUG00000013122)	st8sia5 (ENSSLUG00000013165)	rpl37 (ENSSLUG00000013190)	ptgs1 (ENSSLUG00000013244)
Cottioidei	ANCESTRAL SPECIES	11	ENSGT00530000063675.b	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370	ENSGT00940000158691
Lumpfish	MODERN SPECIES	24	tfip11 (ENSCLMG00005000233)	srrd (ENSCLMG00005000253)	slc1a3a (ENSCLMG00005000258)	nipbla (ENSCLMG00005000282)	ndc80 (ENSCLMG00005000307)	GDNF (ENSCLMG00005000313)	EGFLAM (ENSCLMG00005000322)	opn4xb (ENSCLMG00005000349)	pdlim5a (ENSCLMG00005000355)	bmpr1ba (ENSCLMG00005000405)	UNC5C (ENSCLMG00005000429)	STPG2 (ENSCLMG00005000490)	bri3bp (ENSCLMG00005000492)	wdr31 (ENSCLMG00005000494)	ENSCLMG00005000496	ENSCLMG00005000497 #22	vps13a (ENSCLMG00005000548) #23	ENSCLMG00005000910	arl6ip4 (ENSCLMG00005000912)	PITPNM2 (ENSCLMG00005000923)	mtrfr (ENSCLMG00005001186)	kmt5ab (ENSCLMG00005001187)	rilpl2 (ENSCLMG00005001188)	RILPL1 (ENSCLMG00005001189)	hip1rb (ENSCLMG00005001213)	HCAR1 (ENSCLMG00005007395)	KNTC1 (ENSCLMG00005007404)	rsrc2 (ENSCLMG00005007435)	zcchc8 (ENSCLMG00005007437)	CLIP1 (ENSCLMG00005007440)	ENSCLMG00005007443
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	12	naa35 (ENSGACG00000007653)	GOLM1 (ENSGACG00000007679)	lmbrd2a (ENSGACG00000007686)	slc1a3a (ENSGACG00000007696)	nipbla (ENSGACG00000007706)	ndc80 (ENSGACG00000007732)	ENSGACG00000007743	EGFLAM (ENSGACG00000007745)	opn4xb (ENSGACG00000007757)	pdlim5a (ENSGACG00000007765)	bmpr1ba (ENSGACG00000007776)	UNC5C (ENSGACG00000007780)	bri3bp (ENSGACG00000007804)	wdr31 (ENSGACG00000007806)	ENSGACG00000007821	GNA14 (ENSGACG00000007900) #22	vps13a (ENSGACG00000007925) #23	FOXB2 (ENSGACG00000007973) #24	ENSGACG00000007980	ENSGACG00000007984 #26	ENSGACG00000007993	rfk (ENSGACG00000008000) #28	pcsk5b (ENSGACG00000008029) #29	ubap2b (ENSGACG00000008043)	ENSGACG00000008074	RFESD (ENSGACG00000008080)	gtf2h3 (ENSGACG00000008083)	psmd9 (ENSGACG00000008097)	ENSGACG00000008103	CFAP251 (ENSGACG00000008111)	mlxip (ENSGACG00000008122)
Stickleback	MODERN SPECIES	13	rxfp3 (ENSGACG00000016296)	gng10 (ENSGACG00000016294)	nxnl2 (ENSGACG00000016289)	CSGALNACT1 (ENSGACG00000016287)	ENSGACG00000016285	PLPP1 (ENSGACG00000016270)	mtrex (ENSGACG00000016260)	DHX29 (ENSGACG00000016244)	ENSGACG00000016240	GOLPH3 (ENSGACG00000016233)	ENSGACG00000016225	kcmf1 (ENSGACG00000016222)	ntrk2b (ENSGACG00000016216)	hnrpkl (ENSGACG00000016211)	ENSGACG00000016186 #19	ENSGACG00000016180 #22	prune2 (ENSGACG00000016173) #26	ENSGACG00000016171 #29	ENSGACG00000016170	zgc:73226 (ENSGACG00000016169)	thbs4b (ENSGACG00000016162)	ENSGACG00000016160	zgc:122979 (ENSGACG00000016157)	atp5fa1 (ENSGACG00000016142)	zgc:77838 (ENSGACG00000016140)	RNF165 (ENSGACG00000016138)	LOXHD1 (ENSGACG00000016133)	st8sia5 (ENSGACG00000016126)	rpl37 (ENSGACG00000016123)	PTGS1 (ENSGACG00000016097)	pdcl (ENSGACG00000016094)
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Carangaria	ANCESTRAL SPECIES	9	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Carangaria_A	ANCESTRAL SPECIES	6	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Seriola	ANCESTRAL SPECIES	35	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
Yellowtail amberjack	MODERN SPECIES	2601										BMPR1B (ENSSLDG00000019667)	UNC5C (ENSSLDG00000019697)	STPG2 (ENSSLDG00000019721)	bri3bp (ENSSLDG00000019740)	wdr31 (ENSSLDG00000019747)	ENSSLDG00000019769	GNA14 (ENSSLDG00000019790) #22	vps13a (ENSSLDG00000019834) #23	ENSSLDG00000020037	FOXB2 (ENSSLDG00000020048) #24	ENSSLDG00000020082 #26	ENSSLDG00000020129	ENSSLDG00000020203	rfk (ENSSLDG00000020215) #28	ENSSLDG00000020240 #29
Greater amberjack	MODERN SPECIES	98	lmbrd2a (ENSSDUG00000022007)	slc1a3a (ENSSDUG00000021995)	nipbla (ENSSDUG00000021930)	ndc80 (ENSSDUG00000021910)	GDNF (ENSSDUG00000021907)	EGFLAM (ENSSDUG00000021874)	si:dkey-251i10.2 (ENSSDUG00000021863)	opn4xb (ENSSDUG00000021856)	pdlim5a (ENSSDUG00000021835)	bmpr1ba (ENSSDUG00000021819)	UNC5C (ENSSDUG00000021801)	STPG2 (ENSSDUG00000021790)	bri3bp (ENSSDUG00000021787)	wdr31 (ENSSDUG00000021779)	ENSSDUG00000021773	GNA14 (ENSSDUG00000021761) #22	vps13a (ENSSDUG00000021275) #23	ENSSDUG00000021202	FOXB2 (ENSSDUG00000021192) #24	ENSSDUG00000021131 #26	ENSSDUG00000021099	ENSSDUG00000021068	rfk (ENSSDUG00000021049) #28	ENSSDUG00000021041 #29	pcsk5b (ENSSDUG00000021024) #29	ubap2b (ENSSDUG00000020941)	ENSSDUG00000020923	RFESD (ENSSDUG00000020919)	gtf2h3 (ENSSDUG00000020899)	psmd9 (ENSSDUG00000020887)	ENSSDUG00000020880
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	95	lmbrd2a (ENSLCAG00010028325)	slc1a3a (ENSLCAG00010028324)	nipbla (ENSLCAG00010028323)	ndc80 (ENSLCAG00010028322)	GDNF (ENSLCAG00010028321)	EGFLAM (ENSLCAG00010028320)	si:dkey-251i10.2 (ENSLCAG00010028319)	opn4xb (ENSLCAG00010028318)	pdlim5a (ENSLCAG00010028317)	bmpr1ba (ENSLCAG00010028316)	UNC5C (ENSLCAG00010028315)	STPG2 (ENSLCAG00010028314)	bri3bp (ENSLCAG00010028313)	wdr31 (ENSLCAG00010028312)	ENSLCAG00010028311	GNA14 (ENSLCAG00010028310) #22	vps13a (ENSLCAG00010028309) #23	ENSLCAG00010028308	FOXB2 (ENSLCAG00010028307) #24	ENSLCAG00010028306	ENSLCAG00010028304 #26	ENSLCAG00010028303	rfk (ENSLCAG00010028302) #28	pcsk5b (ENSLCAG00010028301) #29	ubap2b (ENSLCAG00010028299)	ENSLCAG00010028298	RFESD (ENSLCAG00010028296)	gtf2h3 (ENSLCAG00010028295)	psmd9 (ENSLCAG00010028294)	ENSLCAG00010028293	CFAP251 (ENSLCAG00010028292)
Barramundi perch	MODERN SPECIES	101	rxfp3 (ENSLCAG00010003995)	btc (ENSLCAG00010003993)	gng10 (ENSLCAG00010003985)	nxnl2 (ENSLCAG00010003982)	CSGALNACT1 (ENSLCAG00010003978)	PLPP1 (ENSLCAG00010003970)	mtrex (ENSLCAG00010003945)	DHX29 (ENSLCAG00010003344)	PSTPIP2 (ENSLCAG00010003202)	GOLPH3 (ENSLCAG00010003190)	ITGA1 (ENSLCAG00010003053)	kcmf1 (ENSLCAG00010003025)	ntrk2b (ENSLCAG00010002974)	hnrpkl (ENSLCAG00010002964)	ENSLCAG00010002954 #19	ENSLCAG00010002949 #22	prune2 (ENSLCAG00010002946) #26	ENSLCAG00010002896 #29	ENSLCAG00010002878	zgc:73226 (ENSLCAG00010002874)	thbs4b (ENSLCAG00010002473)	ENSLCAG00010002380	zgc:122979 (ENSLCAG00010002377)	atp5fa1 (ENSLCAG00010002375)	zgc:77838 (ENSLCAG00010002371)	RNF165 (ENSLCAG00010002367)	LOXHD1 (ENSLCAG00010002359)	st8sia5 (ENSLCAG00010002346)	rpl37 (ENSLCAG00010002333)	ptgs1 (ENSLCAG00010002329)	pdcl (ENSLCAG00010002322)
Pleuronectoidei	ANCESTRAL SPECIES	8	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
Turbot	MODERN SPECIES	21	slc1a3a (ENSSMAG00000019163)	nipbla (ENSSMAG00000019097)	ENSSMAG00000019051	ENSSMAG00000019044	ENSSMAG00000018944	ENSSMAG00000018926	opn4xb (ENSSMAG00000018910)	ENSSMAG00000018888	pdlim5a (ENSSMAG00000028243)	bmpr1ba (ENSSMAG00000018855)	UNC5C (ENSSMAG00000018821)	STPG2 (ENSSMAG00000018799)	ENSSMAG00000018785	ENSSMAG00000018777	ENSSMAG00000018771	GNA14 (ENSSMAG00000018762) #22	VPS13A (ENSSMAG00000018673) #23	ENSSMAG00000018664	FOXB2 (ENSSMAG00000018662) #24	ENSSMAG00000018637 #26	ENSSMAG00000018611	RFK (ENSSMAG00000018603) #28	pcsk5b (ENSSMAG00000017955) #29	ENSSMAG00000017916	ENSSMAG00000031816	ENSSMAG00000017881	ENSSMAG00000017841	ENSSMAG00000017642	ENSSMAG00000017810	CFAP251 (ENSSMAG00000017415)	MLXIP (ENSSMAG00000017326)
Tongue sole	MODERN SPECIES	34												ENSCSEG00000014471	bri3bp (ENSCSEG00000014451)	wdr31 (ENSCSEG00000014440)	ENSCSEG00000014431	GNA14 (ENSCSEG00000014289) #22	ENSCSEG00000014256
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
Climbing perch	MODERN SPECIES	22	lmbrd2a (ENSATEG00000014475)	slc1a3a (ENSATEG00000014453)	nipbla (ENSATEG00000014308)	ENSATEG00000014281	ENSATEG00000014271	ENSATEG00000014218	ENSATEG00000014190	opn4xb (ENSATEG00000014167)	pdlim5a (ENSATEG00000014080)	bmpr1ba (ENSATEG00000014026)	UNC5C (ENSATEG00000013966)	STPG2 (ENSATEG00000013911)	ENSATEG00000029940	ENSATEG00000013876	ENSATEG00000026851	GNA14 (ENSATEG00000013827) #22	VPS13A (ENSATEG00000012753) #23	ENSATEG00000026923	FOXB2 (ENSATEG00000028383) #24	ENSATEG00000012624 #26	ENSATEG00000012602	RFK (ENSATEG00000012584) #28	pcsk5b (ENSATEG00000012541) #29	ENSATEG00000012455	ENSATEG00000012383	ENSATEG00000012335	ENSATEG00000012298	ENSATEG00000026077	CFAP251 (ENSATEG00000012205)	MLXIP (ENSATEG00000012124)	LRRC43 (ENSATEG00000012094)
Siamese fighting fish	MODERN SPECIES	20	lmbrd2a (ENSBSLG00000002303)	slc1a3a (ENSBSLG00000002179)	nipbla (ENSBSLG00000001915)	ndc80 (ENSBSLG00000001902)	GDNF (ENSBSLG00000001899)	EGFLAM (ENSBSLG00000001825)	si:dkey-251i10.2 (ENSBSLG00000001808)	opn4xb (ENSBSLG00000001794)	pdlim5a (ENSBSLG00000001746)	bmpr1ba (ENSBSLG00000020449)	UNC5C (ENSBSLG00000019525)	STPG2 (ENSBSLG00000019246)	bri3bp (ENSBSLG00000019241)	wdr31 (ENSBSLG00000019230)	ENSBSLG00000019208	GNA14 (ENSBSLG00000019190) #22	vps13a (ENSBSLG00000017832) #23	ENSBSLG00000017753	FOXB2 (ENSBSLG00000017742) #24	ENSBSLG00000017729	ENSBSLG00000017702 #26	ENSBSLG00000017674	rfk (ENSBSLG00000017666) #28	pcsk5b (ENSBSLG00000016382) #29	ubap2b (ENSBSLG00000016339)	ENSBSLG00000016336	ENSBSLG00000016333	gtf2h3 (ENSBSLG00000016293)	psmd9 (ENSBSLG00000016286)	ENSBSLG00000016283	mlxip (ENSBSLG00000016265)
Zig-zag eel	MODERN SPECIES	23	SEMA6A (ENSMAMG00000018861)	COMMD10 (ENSMAMG00000018834)	ENSMAMG00000018803	ENSMAMG00000018788	ENSMAMG00000018764 #17	ENSMAMG00000018718	ENSMAMG00000018711	opn4xb (ENSMAMG00000018631)	pdlim5a (ENSMAMG00000018603)	bmpr1ba (ENSMAMG00000018564)	UNC5C (ENSMAMG00000018531)	STPG2 (ENSMAMG00000018518)	ENSMAMG00000018512	WDR31 (ENSMAMG00000028723)	ENSMAMG00000026659	GNA14 (ENSMAMG00000018474) #22	VPS13A (ENSMAMG00000018333) #23	ENSMAMG00000018310	FOXB2 (ENSMAMG00000018302) #24	ENSMAMG00000018291 #26	ENSMAMG00000026374	RFK (ENSMAMG00000018258) #28	pcsk5b (ENSMAMG00000018135) #29	ENSMAMG00000018105	ENSMAMG00000018078	ENSMAMG00000028287	ENSMAMG00000025557	ENSMAMG00000017917	CFAP251 (ENSMAMG00000017931)	MLXIP (ENSMAMG00000017901)	LRRC43 (ENSMAMG00000017872)
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000171049	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000176108	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147
Cichlidae	ANCESTRAL SPECIES	6	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	11	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a.w.b	ENSGT00940000159331.a.w.a.a	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147
Nile tilapia	MODERN SPECIES	3	slc1a3a (ENSONIG00000014971)	nipbla (ENSONIG00000014956)	ndc80 (ENSONIG00000014951)	ENSONIG00000027207	EGFLAM (ENSONIG00000014949)	si:dkey-251i10.2 (ENSONIG00000041106)	opn4xb (ENSONIG00000014946)	pdlim5a (ENSONIG00000014932)	ENSONIG00000029476	UNC5C (ENSONIG00000014925)	ENSONIG00000014922	bri3bp (ENSONIG00000014921)	ENSONIG00000028933	wdr31 (ENSONIG00000014919)	ENSONIG00000014912	GNA14 (ENSONIG00000037957) #22	vps13a (ENSONIG00000014896) #23	ENSONIG00000020991	FOXB2 (ENSONIG00000020990) #24	ENSONIG00000027318 #26	ENSONIG00000014889	ENSONIG00000035126	ENSONIG00000033683	ENSONIG00000041446	ENSONIG00000043003	ENSONIG00000036825	ENSONIG00000039156	rfk (ENSONIG00000013219) #28	pcsk5b (ENSONIG00000013221) #29	ENSONIG00000013231	ENSONIG00000039927
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	8	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a.w.a.a	ENSGT00940000159331.a.w.b	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	306	ENSNBRG00000011142	EGFLAM (ENSNBRG00000011085)	si:dkey-251i10.2 (ENSNBRG00000011053)	opn4xb (ENSNBRG00000011027)	ENSNBRG00000011016	ENSNBRG00000011003	ENSNBRG00000010994	bmpr1ba (ENSNBRG00000010966)	UNC5C (ENSNBRG00000010924)	STPG2 (ENSNBRG00000010845)	bri3bp (ENSNBRG00000010826)	wdr31 (ENSNBRG00000010801)	gnaq (ENSNBRG00000010770) #19	ENSNBRG00000010758	ENSNBRG00000010750 #22	GNA14 (ENSNBRG00000010740) #22	vps13a (ENSNBRG00000009814) #23	ENSNBRG00000009714	FOXB2 (ENSNBRG00000009689) #24	ENSNBRG00000009664	ENSNBRG00000009639 #26	ENSNBRG00000009561	ENSNBRG00000009538	ENSNBRG00000009493	rfk (ENSNBRG00000009466) #28	ENSNBRG00000009442	pcsk5b (ENSNBRG00000009417) #29	ubap2b (ENSNBRG00000009285)	gtf2h3 (ENSNBRG00000009206)	psmd9 (ENSNBRG00000009175)	ENSNBRG00000009167
Lyretail cichlid	MODERN SPECIES	306	ndc80 (ENSNBRG00000011167)	ENSNBRG00000011142	EGFLAM (ENSNBRG00000011085)	si:dkey-251i10.2 (ENSNBRG00000011053)	opn4xb (ENSNBRG00000011027)	ENSNBRG00000011016	ENSNBRG00000011003	ENSNBRG00000010994	bmpr1ba (ENSNBRG00000010966)	UNC5C (ENSNBRG00000010924)	STPG2 (ENSNBRG00000010845)	bri3bp (ENSNBRG00000010826)	wdr31 (ENSNBRG00000010801)	gnaq (ENSNBRG00000010770) #19	ENSNBRG00000010758	ENSNBRG00000010750 #22	GNA14 (ENSNBRG00000010740) #22	vps13a (ENSNBRG00000009814) #23	ENSNBRG00000009714	FOXB2 (ENSNBRG00000009689) #24	ENSNBRG00000009664	ENSNBRG00000009639 #26	ENSNBRG00000009561	ENSNBRG00000009538	ENSNBRG00000009493	rfk (ENSNBRG00000009466) #28	ENSNBRG00000009442	pcsk5b (ENSNBRG00000009417) #29	ubap2b (ENSNBRG00000009285)	gtf2h3 (ENSNBRG00000009206)	psmd9 (ENSNBRG00000009175)
Haplochromini	ANCESTRAL SPECIES	4	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504.c	ENSGT00940000158504.b	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000173665	ENSGT00940000154422.c #26	ENSGT00940000159331.a.w.a.a.d	ENSGT00940000159331.a.w.a.a.c.a	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147
Burton s mouthbrooder	MODERN SPECIES	283	slc1a3a (ENSHBUG00000009870)	nipbla (ENSHBUG00000009817)	ndc80 (ENSHBUG00000000244)	ENSHBUG00000009535	EGFLAM (ENSHBUG00000009496)	si:dkey-251i10.2 (ENSHBUG00000009309)	opn4xb (ENSHBUG00000009296)	pdlim5a (ENSHBUG00000009250)	bmpr1ba (ENSHBUG00000009202)	UNC5C (ENSHBUG00000009151)	STPG2 (ENSHBUG00000009016)	bri3bp (ENSHBUG00000008999)	wdr31 (ENSHBUG00000008981)	ENSHBUG00000008963	vps13a (ENSHBUG00000008919) #23	GNA14 (ENSHBUG00000008725) #22	ENSHBUG00000008707	FOXB2 (ENSHBUG00000008696) #24	ENSHBUG00000008634	ENSHBUG00000008615 #26	ENSHBUG00000008530	rfk (ENSHBUG00000008361) #28	ENSHBUG00000008318	pcsk5b (ENSHBUG00000008289) #29	ubap2b (ENSHBUG00000008244)	ENSHBUG00000008180	RFESD (ENSHBUG00000008172)	gtf2h3 (ENSHBUG00000008155)	psmd9 (ENSHBUG00000008037)	ENSHBUG00000008017	CFAP251 (ENSHBUG00000008006)
Haplochromini_A	DUPLICATION
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504.c	ENSGT00940000179796	ENSGT00940000158504.b	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.w #22	ENSGT00940000158510.x #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a.w.a.a.d	ENSGT00940000159331.a.x	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504.c	ENSGT00940000179796	ENSGT00940000158504.b	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.w #22	ENSGT00940000158510.x #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a.w.a.a.d	ENSGT00940000159331.a.x	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147
Eastern happy	MODERN SPECIES	3	GDNF (ENSACLG00000019329)	EGFLAM (ENSACLG00000019344)	si:dkey-251i10.2 (ENSACLG00000019456)	opn4xb (ENSACLG00000019486)	GDNF (ENSACLG00000019522)	EGFLAM (ENSACLG00000019536)	ENSACLG00000019601	opn4xb (ENSACLG00000019622)	pdlim5a (ENSACLG00000019648)	bmpr1ba (ENSACLG00000019659)	UNC5C (ENSACLG00000019732)	STPG2 (ENSACLG00000019810)	bri3bp (ENSACLG00000019833)	wdr31 (ENSACLG00000019840)	ENSACLG00000019861	GNA14 (ENSACLG00000019914) #22	GNA14 (ENSACLG00000019930) #22	vps13a (ENSACLG00000020134) #23	ENSACLG00000022647	FOXB2 (ENSACLG00000022667) #24	ENSACLG00000022715 #26	ENSACLG00000022740	ENSACLG00000022792	ENSACLG00000022813	ENSACLG00000022881	ENSACLG00000022940	rfk (ENSACLG00000022953) #28	pcsk5b (ENSACLG00000023019) #29	ubap2b (ENSACLG00000023092)	ENSACLG00000023195	RFESD (ENSACLG00000023204)
Zebra mbuna	MODERN SPECIES	1094	FRMD3 (ENSMZEG00005004753)	IDNK (ENSMZEG00005004724)	UBQLN1 (ENSMZEG00005004709)	gkap1 (ENSMZEG00005004690)	KIF27 (ENSMZEG00005004665)	zgc:136564 (ENSMZEG00005004648)	hnrnpk (ENSMZEG00005004611)	rmi1 (ENSMZEG00005004595)	ENSMZEG00005004573	SLC28A3 (ENSMZEG00005004540)	ENSMZEG00005004526	ENSMZEG00005004497	bri3bp (ENSMZEG00005004490)	wdr31 (ENSMZEG00005004475)	ENSMZEG00005004457	GNA14 (ENSMZEG00005004299) #22	GNA14 (ENSMZEG00005004271) #22	vps13a (ENSMZEG00005002197) #23	ENSMZEG00005002079	FOXB2 (ENSMZEG00005002047) #24	ENSMZEG00005001778 #26	ENSMZEG00005001735	ENSMZEG00005001701	ENSMZEG00005001646	ENSMZEG00005001630	rfk (ENSMZEG00005001605) #28	ENSMZEG00005001581	pcsk5b (ENSMZEG00005001567) #29	ENSMZEG00005001516	ENSMZEG00005001500	RFESD (ENSMZEG00005001488)
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504.c	ENSGT00940000179796	ENSGT00940000158504.b	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.w #22	ENSGT00940000158510.x #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a.w.a.a.d	ENSGT00940000159331.a.x	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
P. nyererei	MODERN SPECIES	301	nipbla (ENSPNYG00000011546)	ndc80 (ENSPNYG00000011801)	GDNF (ENSPNYG00000011827)	EGFLAM (ENSPNYG00000011856)	ENSPNYG00000011921	opn4xb (ENSPNYG00000011934)	ENSPNYG00000011959	ENSPNYG00000011972	pdlim5a (ENSPNYG00000011978)	bmpr1ba (ENSPNYG00000012001)	UNC5C (ENSPNYG00000012038)	STPG2 (ENSPNYG00000012085)	bri3bp (ENSPNYG00000012122)	wdr31 (ENSPNYG00000012137)	ENSPNYG00000012168	GNA14 (ENSPNYG00000012201) #22	vps13a (ENSPNYG00000012394) #23	ENSPNYG00000013617	FOXB2 (ENSPNYG00000013634) #24	ENSPNYG00000013671 #26	rfk (ENSPNYG00000013702) #28	ENSPNYG00000013726	pcsk5b (ENSPNYG00000013754) #29	ENSPNYG00000013838	RFESD (ENSPNYG00000013899)	gtf2h3 (ENSPNYG00000013914)	psmd9 (ENSPNYG00000013930)	ENSPNYG00000013947	ENSPNYG00000013965	mlxip (ENSPNYG00000014006)	ENSPNYG00000014031
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504.c	ENSGT00940000179796	ENSGT00940000158504.b	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.w #22	ENSGT00940000158510.x #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a.w.a.a.d	ENSGT00940000159331.a.x	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Zebra mbuna	MODERN SPECIES	1094	IDNK (ENSMZEG00005004724)	UBQLN1 (ENSMZEG00005004709)	gkap1 (ENSMZEG00005004690)	KIF27 (ENSMZEG00005004665)	zgc:136564 (ENSMZEG00005004648)	hnrnpk (ENSMZEG00005004611)	rmi1 (ENSMZEG00005004595)	ENSMZEG00005004573	SLC28A3 (ENSMZEG00005004540)	ENSMZEG00005004526	ENSMZEG00005004497	bri3bp (ENSMZEG00005004490)	wdr31 (ENSMZEG00005004475)	ENSMZEG00005004457	GNA14 (ENSMZEG00005004299) #22	GNA14 (ENSMZEG00005004271) #22	vps13a (ENSMZEG00005002197) #23	ENSMZEG00005002079	FOXB2 (ENSMZEG00005002047) #24	ENSMZEG00005001778 #26	ENSMZEG00005001735	ENSMZEG00005001701	ENSMZEG00005001646	ENSMZEG00005001630	rfk (ENSMZEG00005001605) #28	ENSMZEG00005001581	pcsk5b (ENSMZEG00005001567) #29	ENSMZEG00005001516	ENSMZEG00005001500	RFESD (ENSMZEG00005001488)	gtf2h3 (ENSMZEG00005001438)
Eastern happy	MODERN SPECIES	3	EGFLAM (ENSACLG00000019344)	si:dkey-251i10.2 (ENSACLG00000019456)	opn4xb (ENSACLG00000019486)	GDNF (ENSACLG00000019522)	EGFLAM (ENSACLG00000019536)	ENSACLG00000019601	opn4xb (ENSACLG00000019622)	pdlim5a (ENSACLG00000019648)	bmpr1ba (ENSACLG00000019659)	UNC5C (ENSACLG00000019732)	STPG2 (ENSACLG00000019810)	bri3bp (ENSACLG00000019833)	wdr31 (ENSACLG00000019840)	ENSACLG00000019861	GNA14 (ENSACLG00000019914) #22	GNA14 (ENSACLG00000019930) #22	vps13a (ENSACLG00000020134) #23	ENSACLG00000022647	FOXB2 (ENSACLG00000022667) #24	ENSACLG00000022715 #26	ENSACLG00000022740	ENSACLG00000022792	ENSACLG00000022813	ENSACLG00000022881	ENSACLG00000022940	rfk (ENSACLG00000022953) #28	pcsk5b (ENSACLG00000023019) #29	ubap2b (ENSACLG00000023092)	ENSACLG00000023195	RFESD (ENSACLG00000023204)	gtf2h3 (ENSACLG00000023213)
Midas cichlid	MODERN SPECIES	630	lmbrd2a (ENSACIG00000004828)	slc1a3a (ENSACIG00000004802)	nipbla (ENSACIG00000004615)	ndc80 (ENSACIG00000004570)	GDNF (ENSACIG00000004542)	EGFLAM (ENSACIG00000004487)	si:dkey-251i10.2 (ENSACIG00000004467)	opn4xb (ENSACIG00000004440)	pdlim5a (ENSACIG00000004356)	bmpr1ba (ENSACIG00000004333)	UNC5C (ENSACIG00000004303)	STPG2 (ENSACIG00000004203)	bri3bp (ENSACIG00000004184)	wdr31 (ENSACIG00000004157)	ENSACIG00000004132	GNA14 (ENSACIG00000004108) #22	vps13a (ENSACIG00000003169) #23	ENSACIG00000003104	FOXB2 (ENSACIG00000003097) #24	ENSACIG00000003077 #26	ENSACIG00000003037	ENSACIG00000002995	ENSACIG00000002991	rfk (ENSACIG00000002975) #28	ENSACIG00000002968	pcsk5b (ENSACIG00000002788) #29	ENSACIG00000002764	ENSACIG00000002731	gtf2h3 (ENSACIG00000002652)	psmd9 (ENSACIG00000002520)	ENSACIG00000002487
Pomacentridae	ANCESTRAL SPECIES		ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000176108	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Bicolor damselfish	MODERN SPECIES	716												ENSSPAG00000000225	bri3bp (ENSSPAG00000000311)	wdr31 (ENSSPAG00000000323)	ENSSPAG00000000339	ENSSPAG00000000344 #22	vps13a (ENSSPAG00000000418) #23	ENSSPAG00000001942
Pomacentridae_A	ANCESTRAL SPECIES	1	ENSGT00530000063675.b	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386.w	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.a #29	ENSGT00940000176108	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Amphiprion	ANCESTRAL SPECIES	10	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386.w	ENSGT00950000182993.A.b.f	ENSGT00940000182521	ENSGT00940000158504	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000176108	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000155356.d.b.a.a.a.a.a.a.b	ENSGT00940000154540.b
Orange clownfish	MODERN SPECIES	19	ENSAPEG00000001447	ndc80 (ENSAPEG00000001431)	GDNF (ENSAPEG00000001418)	ENSAPEG00000001374	EGFLAM (ENSAPEG00000001264)	opn4xb (ENSAPEG00000001219)	ENSAPEG00000001213	pdlim5a (ENSAPEG00000001184)	ENSAPEG00000001170	bmpr1ba (ENSAPEG00000001141)	UNC5C (ENSAPEG00000001042)	STPG2 (ENSAPEG00000001001)	bri3bp (ENSAPEG00000000978)	wdr31 (ENSAPEG00000000956)	ENSAPEG00000000924	GNA14 (ENSAPEG00000000874) #22	vps13a (ENSAPEG00000000630) #23	ENSAPEG00000000617	FOXB2 (ENSAPEG00000000597) #24	ENSAPEG00000000520 #26	ENSAPEG00000000440	ENSAPEG00000000425	rfk (ENSAPEG00000000389) #28	ENSAPEG00000000367	pcsk5b (ENSAPEG00000000363) #29	ubap2b (ENSAPEG00000000301)	ENSAPEG00000024759	RFESD (ENSAPEG00000024755)	gtf2h3 (ENSAPEG00000024750)	psmd9 (ENSAPEG00000024747)	ENSAPEG00000024745
Clown anemonefish	MODERN SPECIES	1497																GNA14 (ENSAOCG00000022506) #22	vps13a (ENSAOCG00000023130) #23	ENSAOCG00000002579	FOXB2 (ENSAOCG00000023236) #24	ENSAOCG00000023265 #26	ENSAOCG00000023309	slco3a1a (ENSAOCG00000023336)	si:dkeyp-59c12.1 (ENSAOCG00000023368)	gnrhr4 (ENSAOCG00000023607)
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	9	odf3l2a (ENSAPOG00000021531)	crlf1a (ENSAPOG00000021611)	keap1a (ENSAPOG00000021664)	SSBP4 (ENSAPOG00000021699)	ENSAPOG00000021714	ENSAPOG00000021737	d2hgdh (ENSAPOG00000021787)	acvr1l (ENSAPOG00000021807)	otomp (ENSAPOG00000021844)	hs6st1b (ENSAPOG00000021875)	uggt1 (ENSAPOG00000021954)	bri3bp (ENSAPOG00000021988)	wdr31 (ENSAPOG00000022023)	ENSAPOG00000022062	mibp2 (ENSAPOG00000022093)	GNA14 (ENSAPOG00000022114) #22	vps13a (ENSAPOG00000023260) #23	ENSAPOG00000023325	FOXB2 (ENSAPOG00000023340) #24	ENSAPOG00000023424 #26	ENSAPOG00000023438	EPHB3 (ENSAPOG00000023574)	ENSAPOG00000023636	polr2h (ENSAPOG00000023660)	b3gnt7 (ENSAPOG00000023672)	ARMC9 (ENSAPOG00000023800)	ncl (ENSAPOG00000023888)	nppc (ENSAPOG00000023909)	ENSAPOG00000023928	alpi.1 (ENSAPOG00000023972)	alpi.2 (ENSAPOG00000023981)
Spiny chromis	MODERN SPECIES	746												kcmf1 (ENSAPOG00000006727)	ntrk2b (ENSAPOG00000006744)	hnrpkl (ENSAPOG00000006764)	ENSAPOG00000006795 #19	ENSAPOG00000006825 #22	ENSAPOG00000006840	prune2 (ENSAPOG00000006888) #26	ENSAPOG00000006979 #29	ENSAPOG00000006988	zgc:73226 (ENSAPOG00000007019)	thbs4b (ENSAPOG00000007117)	ENSAPOG00000000199	zgc:122979 (ENSAPOG00000007367)	hwa (ENSAPOG00000000201)	atp5fa1 (ENSAPOG00000007424)
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000171049	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Oryzias	ANCESTRAL SPECIES	7	ENSGT00390000009571.a.a.a	ENSGT00530000063675.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Oryzias_b	ANCESTRAL SPECIES	6	ENSGT00390000009571.a.a.a	ENSGT00530000063675.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
Indian medaka	MODERN SPECIES	11	GOLM1 (ENSOMEG00000023710)	slc1a3a (ENSOMEG00000023718)	nipbla (ENSOMEG00000000744)	ndc80 (ENSOMEG00000023750)	ENSOMEG00000023755	EGFLAM (ENSOMEG00000023779)	si:dkey-251i10.2 (ENSOMEG00000023786)	opn4xb (ENSOMEG00000023798)	pdlim5a (ENSOMEG00000001351)	bmpr1ba (ENSOMEG00000001362)	UNC5C (ENSOMEG00000000007)	ENSOMEG00000000009	bri3bp (ENSOMEG00000000011)	wdr31 (ENSOMEG00000001382)	ENSOMEG00000001390	GNA14 (ENSOMEG00000001391) #22	ENSOMEG00000001394	ENSOMEG00000001399 #23	ENSOMEG00000001408 #23	ENSOMEG00000001414	FOXB2 (ENSOMEG00000001419) #24	ENSOMEG00000001432 #26	ENSOMEG00000001439	rfk (ENSOMEG00000001442) #28	ENSOMEG00000001446	pcsk5b (ENSOMEG00000001461) #29	ubap2b (ENSOMEG00000001488)	ENSOMEG00000001510	RFESD (ENSOMEG00000001514)	gtf2h3 (ENSOMEG00000001520)	psmd9 (ENSOMEG00000001530)
Javanese ricefish	MODERN SPECIES	23	GOLM1 (ENSOJAG00000007520)	slc1a3a (ENSOJAG00000007552)	nipbla (ENSOJAG00000007817)	ndc80 (ENSOJAG00000007933)	GDNF (ENSOJAG00000008045)	EGFLAM (ENSOJAG00000008092)	si:dkey-251i10.2 (ENSOJAG00000008423)	opn4xb (ENSOJAG00000008438)	pdlim5a (ENSOJAG00000008467)	bmpr1ba (ENSOJAG00000008506)	UNC5C (ENSOJAG00000009429)	ENSOJAG00000011229	bri3bp (ENSOJAG00000011235)	wdr31 (ENSOJAG00000011256)	ENSOJAG00000011329	GNA14 (ENSOJAG00000011364) #22	ENSOJAG00000011431 #23	ENSOJAG00000012330	FOXB2 (ENSOJAG00000012343) #24	ENSOJAG00000012355 #26	ENSOJAG00000012448	rfk (ENSOJAG00000012467) #28	pcsk5b (ENSOJAG00000012640) #29	ubap2b (ENSOJAG00000015342)	ENSOJAG00000015397	RFESD (ENSOJAG00000015405)	gtf2h3 (ENSOJAG00000015414)	psmd9 (ENSOJAG00000015531)	ENSOJAG00000015540	CFAP251 (ENSOJAG00000015546)	mlxip (ENSOJAG00000015587)
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00390000009571.a.a.a	ENSGT00530000063675.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370	ENSGT00940000158691
Japanese Medaka HdrR	MODERN SPECIES	23	GOLM1 (ENSORLG00000005368)	slc1a3a (ENSORLG00000005396)	nipbla (ENSORLG00000005446)	ndc80 (ENSORLG00000005465)	GDNF (ENSORLG00000023134)	EGFLAM (ENSORLG00000005499)	si:dkey-251i10.2 (ENSORLG00000005506)	opn4xb (ENSORLG00000005512)	pdlim5a (ENSORLG00000005537)	bmpr1ba (ENSORLG00000005565)	UNC5C (ENSORLG00000005617)	ENSORLG00000025953	bri3bp (ENSORLG00000005629)	wdr31 (ENSORLG00000005644)	ENSORLG00000005669	GNA14 (ENSORLG00000005681) #22	vps13a (ENSORLG00000005718) #23	ENSORLG00000023369	foxb2 (ENSORLG00000005726) #24	ENSORLG00000005730 #26	ENSORLG00000030039	ENSORLG00000005742	rfk (ENSORLG00000005753) #28	pcsk5b (ENSORLG00000005789) #29	ubap2b (ENSORLG00000005856)	ENSORLG00000024676	ENSORLG00000005873	gtf2h3 (ENSORLG00000005886)	psmd9 (ENSORLG00000005905)	ENSORLG00000005911	CFAP251 (ENSORLG00000005926)
Chinese medaka	MODERN SPECIES	528													bri3bp (ENSOSIG00000016392)	wdr31 (ENSOSIG00000016394)	ENSOSIG00000016399	GNA14 (ENSOSIG00000016402) #22	vps13a (ENSOSIG00000016435) #23	ENSOSIG00000017153	FOXB2 (ENSOSIG00000017154) #24	ENSOSIG00000017159 #26	ENSOSIG00000017190	rfk (ENSOSIG00000017194) #28	pcsk5b (ENSOSIG00000017210) #29	ENSOSIG00000018459	gtf2h3 (ENSOSIG00000018461)	psmd9 (ENSOSIG00000018467)	ENSOSIG00000018483	CFAP251 (ENSOSIG00000018491)	mlxip (ENSOSIG00000018496)	ENSOSIG00000018499	CLIP1 (ENSOSIG00000018509)
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000171049	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Aplocheiloidei	ANCESTRAL SPECIES	24	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370	ENSGT00940000158691
Mangrove rivulus	MODERN SPECIES	26	slc1a3a (ENSKMAG00000020629)	nipbla (ENSKMAG00000020533)	ndc80 (ENSKMAG00000020492)	ENSKMAG00000020480	EGFLAM (ENSKMAG00000020383)	si:dkey-251i10.2 (ENSKMAG00000020340)	opn4xb (ENSKMAG00000020321)	pdlim5a (ENSKMAG00000020281)	bmpr1ba (ENSKMAG00000020249)	ENSKMAG00000020221	UNC5C (ENSKMAG00000020144)	STPG2 (ENSKMAG00000020110)	bri3bp (ENSKMAG00000020104)	wdr31 (ENSKMAG00000020089)	ENSKMAG00000020068	GNA14 (ENSKMAG00000020049) #22	vps13a (ENSKMAG00000019919) #23	ENSKMAG00000019886	FOXB2 (ENSKMAG00000019879) #24	ENSKMAG00000019860 #26	ENSKMAG00000019821	ENSKMAG00000019799	rfk (ENSKMAG00000019786) #28	pcsk5b (ENSKMAG00000019726) #29	ubap2b (ENSKMAG00000019643)	ENSKMAG00000019603	RFESD (ENSKMAG00000019587)	gtf2h3 (ENSKMAG00000019548)	psmd9 (ENSKMAG00000019571)	ENSKMAG00000019527	CFAP251 (ENSKMAG00000019425)
Turquoise killifish	MODERN SPECIES	1627	NIPBLA (ENSNFUG00015014878)	ndc80 (ENSNFUG00015014729)	ENSNFUG00015014707	EGFLAM (ENSNFUG00015014310)	si:dkey-251i10.2 (ENSNFUG00015014257)	opn4xb (ENSNFUG00015014193)	ENSNFUG00015014181	pdlim5a (ENSNFUG00015014100)	ENSNFUG00015014064	BMPR1BA (ENSNFUG00015024795)	UNC5C (ENSNFUG00015024648)	ENSNFUG00015024619	BRI3BP (ENSNFUG00015024614)	wdr31 (ENSNFUG00015024602)	ENSNFUG00015024592	GNA14 (ENSNFUG00015024587) #22	vps13a (ENSNFUG00015024449) #23	ENSNFUG00015024434	FOXB2 (ENSNFUG00015024430) #24	ENSNFUG00015024423 #26	ENSNFUG00015024405	ENSNFUG00015024404	ENSNFUG00015024398	RFK (ENSNFUG00015024393) #28	pcsk5b (ENSNFUG00015024223) #29	ubap2b (ENSNFUG00015024201)	ENSNFUG00015024199	RFESD (ENSNFUG00015024196)	gtf2h3 (ENSNFUG00015024187)	PSMD9 (ENSNFUG00015024177)	ENSNFUG00015024156
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00530000063675.b	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Poeciliinae	DUPLICATION
Poeciliinae	DUPLICATION
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT01100000263525.a.a	ENSGT00940000161260	ENSGT01050000244968.c.c	ENSGT00940000156730.b	ENSGT00940000156183	ENSGT00940000157286	ENSGT00940000158788	ENSGT00980000199400	ENSGT00390000007153.a.a.b	ENSGT00940000157646	ENSGT00510000047171.y	ENSGT00940000155181.c.b	ENSGT00940000153434.c.b	ENSGT00940000161347.a.a #19	ENSGT00940000161347.a.b.g.b #19	ENSGT00940000158510.`b.a #22	ENSGT00940000161347.a.b.g.a #19	ENSGT00940000161347.a.b.h #19	ENSGT00940000154422.d #26	ENSGT00940000155770.b.b #29	ENSGT00940000170274	ENSGT00390000013415.b	ENSGT00940000155227.a	ENSGT00390000018729.a.f	ENSGT00940000156090.b	ENSGT01000000214630	ENSGT00550000074846.jb.b	ENSGT00390000016167	ENSGT00940000156997.b	ENSGT00390000018830.a.b	ENSGT01030000234535.C
Platyfish	MODERN SPECIES	22	gng10 (ENSXMAG00000013638)	nxnl2 (ENSXMAG00000013635)	CSGALNACT1 (ENSXMAG00000028446)	PLPP1 (ENSXMAG00000004780)	mtrex (ENSXMAG00000004799)	DHX29 (ENSXMAG00000004847)	ENSXMAG00000004871	pmaip1 (ENSXMAG00000028157)	GOLPH3 (ENSXMAG00000021187)	ENSXMAG00000004890	kcmf1 (ENSXMAG00000021858)	ntrk2b (ENSXMAG00000004917)	hnrpkl (ENSXMAG00000004923)	ENSXMAG00000022761 #19	ENSXMAG00000026652	ENSXMAG00000004944 #22	gna14 (ENSXMAG00000004946) #19	gna14 (ENSXMAG00000022637) #19	prune2 (ENSXMAG00000026292) #26	ENSXMAG00000004957 #29	ENSXMAG00000026071	zgc:73226 (ENSXMAG00000028910)	ENSXMAG00000023621	thbs4b (ENSXMAG00000005071)	ENSXMAG00000005101	zgc:122979 (ENSXMAG00000001193)	hwa (ENSXMAG00000021928)	atp5fa1 (ENSXMAG00000001160)	zgc:77838 (ENSXMAG00000005105)	RNF165 (ENSXMAG00000029477)	LOXHD1 (ENSXMAG00000005112)
Poecilia	ANCESTRAL SPECIES	12	ENSGT00940000160508	ENSGT01100000263525.a.a	ENSGT00940000161260	ENSGT01050000244968.c.c	ENSGT00940000156730.b	ENSGT00940000156183	ENSGT00940000157286	ENSGT00940000158788	ENSGT00390000007153.a.a.b	ENSGT00940000157646	ENSGT00510000047171.y	ENSGT00940000155181.c.b	ENSGT00940000153434.c.b	ENSGT00940000161347.a.a #19	ENSGT00940000161347.a.b.g.b #19	ENSGT00940000158510.`b.a #22	ENSGT00940000161347.a.b.g.a #19	ENSGT00940000161347.a.b.h #19	ENSGT00940000154422.d #26	ENSGT00940000155770.b.b #29	ENSGT00940000170274	ENSGT00390000013415.b	ENSGT00940000155227.a	ENSGT00390000018729.a.f	ENSGT00940000156090.b	ENSGT01000000214630	ENSGT00550000074846.jb.b	ENSGT00390000016167	ENSGT00940000156997.b	ENSGT00390000018830.a.b	ENSGT01030000234535.C
Guppy	MODERN SPECIES	442	ENSPREG00000003248	gng10 (ENSPREG00000003234)	nxnl2 (ENSPREG00000003218)	CSGALNACT1 (ENSPREG00000003182)	PLPP1 (ENSPREG00000003154)	mtrex (ENSPREG00000003089)	DHX29 (ENSPREG00000003029)	PSTPIP2 (ENSPREG00000003015)	GOLPH3 (ENSPREG00000002993)	ENSPREG00000002974	kcmf1 (ENSPREG00000002942)	ntrk2b (ENSPREG00000002914)	hnrpkl (ENSPREG00000002843)	ENSPREG00000002817 #19	gna14 (ENSPREG00000002803) #19	ENSPREG00000002787 #22	ENSPREG00000002778 #22	ENSPREG00000002697 #29	ENSPREG00000002672	zgc:73226 (ENSPREG00000002647)	thbs4b (ENSPREG00000002574)	ENSPREG00000002443	zgc:122979 (ENSPREG00000002420)	hwa (ENSPREG00000002407)	atp5fa1 (ENSPREG00000002381)	zgc:77838 (ENSPREG00000002353)	RNF165 (ENSPREG00000002318)	LOXHD1 (ENSPREG00000002175)	st8sia5 (ENSPREG00000002126)	ENSPREG00000002104	ptgs1 (ENSPREG00000002054)
NAME_6	ANCESTRAL SPECIES	13	ENSGT01030000234518.B.a.a.c	ENSGT00940000160508	ENSGT01100000263525.a.a	ENSGT00940000161260	ENSGT01050000244968.c.c	ENSGT00940000156730.b	ENSGT00940000156183	ENSGT00940000157286	ENSGT00940000158788	ENSGT00390000007153.a.a.b	ENSGT00940000157646	ENSGT00510000047171.y	ENSGT00940000155181.c.b	ENSGT00940000153434.c.b	ENSGT00940000161347.a.a #19	ENSGT00940000158510.`b.a #22	ENSGT00940000161347.a.b.g.a #19	ENSGT00940000161347.a.b.h #19	ENSGT00940000154422.d #26	ENSGT00940000155770.b.b #29	ENSGT00940000170274	ENSGT00390000013415.b	ENSGT00940000155227.a.b	ENSGT00390000018729.a.f.b	ENSGT00940000156090.b	ENSGT01000000214630	ENSGT00550000074846.jb.b	ENSGT00390000016167	ENSGT00940000156997.b	ENSGT00390000018830.a.b	ENSGT01030000234535.C
Amazon molly	MODERN SPECIES	664								DHX29 (ENSPFOG00000012697)	ENSPFOG00000012931	GOLPH3 (ENSPFOG00000013093)	ENSPFOG00000013129	kcmf1 (ENSPFOG00000013355)	ntrk2b (ENSPFOG00000013362)	hnrpkl (ENSPFOG00000013507)	ENSPFOG00000013654 #19	ENSPFOG00000013809 #22	gna14 (ENSPFOG00000013817) #19	gna14 (ENSPFOG00000013820) #19	prune2 (ENSPFOG00000013832) #26	ENSPFOG00000013865 #29	ENSPFOG00000022565	zgc:73226 (ENSPFOG00000014184)	thbs4b (ENSPFOG00000014191)	ENSPFOG00000014280	zgc:122979 (ENSPFOG00000014288)	atp5fa1 (ENSPFOG00000014312)	ENSPFOG00000024580	zgc:77838 (ENSPFOG00000014350)	RNF165 (ENSPFOG00000014366)	LOXHD1 (ENSPFOG00000014448)
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000158510.`b.b #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000158510.`b.b #22
Guppy	MODERN SPECIES	442	gng10 (ENSPREG00000003234)	nxnl2 (ENSPREG00000003218)	CSGALNACT1 (ENSPREG00000003182)	PLPP1 (ENSPREG00000003154)	mtrex (ENSPREG00000003089)	DHX29 (ENSPREG00000003029)	PSTPIP2 (ENSPREG00000003015)	GOLPH3 (ENSPREG00000002993)	ENSPREG00000002974	kcmf1 (ENSPREG00000002942)	ntrk2b (ENSPREG00000002914)	hnrpkl (ENSPREG00000002843)	ENSPREG00000002817 #19	gna14 (ENSPREG00000002803) #19	ENSPREG00000002787 #22	ENSPREG00000002778 #22	ENSPREG00000002697 #29	ENSPREG00000002672	zgc:73226 (ENSPREG00000002647)	thbs4b (ENSPREG00000002574)	ENSPREG00000002443	zgc:122979 (ENSPREG00000002420)	hwa (ENSPREG00000002407)	atp5fa1 (ENSPREG00000002381)	zgc:77838 (ENSPREG00000002353)	RNF165 (ENSPREG00000002318)	LOXHD1 (ENSPREG00000002175)	st8sia5 (ENSPREG00000002126)	ENSPREG00000002104	ptgs1 (ENSPREG00000002054)	pdcl (ENSPREG00000002038)
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00530000063675.b	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.ab #22	ENSGT00940000165714	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Poecilia	ANCESTRAL SPECIES	3	ENSGT00530000063675.b	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.ab #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
NAME_6	ANCESTRAL SPECIES	51	ENSGT00530000063675.b	ENSGT00390000018651.b	ENSGT00940000155464.a.b	ENSGT00390000010427.c.t	ENSGT00390000018386	ENSGT00950000182993.A.b.f	ENSGT00940000158504	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.ab #22	ENSGT00950000183083.a.d.b.cb #23	ENSGT00950000183083.a.d.b.bb #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000171049	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	277	lmbrd2a (ENSPFOG00000018671)	slc1a3a (ENSPFOG00000018655)	nipbla (ENSPFOG00000018626)	ndc80 (ENSPFOG00000018599)	ENSPFOG00000018588	ENSPFOG00000018586	EGFLAM (ENSPFOG00000018544)	si:dkey-251i10.2 (ENSPFOG00000018535)	opn4xb (ENSPFOG00000018528)	pdlim5a (ENSPFOG00000018515)	bmpr1ba (ENSPFOG00000018504)	UNC5C (ENSPFOG00000018451)	bri3bp (ENSPFOG00000018444)	wdr31 (ENSPFOG00000018436)	ENSPFOG00000018421	ENSPFOG00000022247 #22	vps13a (ENSPFOG00000022370) #23	GNA14 (ENSPFOG00000018412) #22	vps13a (ENSPFOG00000018366) #23	ENSPFOG00000020823	FOXB2 (ENSPFOG00000020822) #24	ENSPFOG00000018358 #26	ENSPFOG00000018355 #26	ENSPFOG00000018347	rfk (ENSPFOG00000018341) #28	pcsk5b (ENSPFOG00000018200) #29	ubap2b (ENSPFOG00000018141)	ENSPFOG00000018138	RFESD (ENSPFOG00000022283)	gtf2h3 (ENSPFOG00000018098)	psmd9 (ENSPFOG00000018129)
Amazon molly	MODERN SPECIES	277	nipbla (ENSPFOG00000018626)	ndc80 (ENSPFOG00000018599)	ENSPFOG00000018588	ENSPFOG00000018586	EGFLAM (ENSPFOG00000018544)	si:dkey-251i10.2 (ENSPFOG00000018535)	opn4xb (ENSPFOG00000018528)	pdlim5a (ENSPFOG00000018515)	bmpr1ba (ENSPFOG00000018504)	UNC5C (ENSPFOG00000018451)	bri3bp (ENSPFOG00000018444)	wdr31 (ENSPFOG00000018436)	ENSPFOG00000018421	ENSPFOG00000022247 #22	vps13a (ENSPFOG00000022370) #23	GNA14 (ENSPFOG00000018412) #22	vps13a (ENSPFOG00000018366) #23	ENSPFOG00000020823	FOXB2 (ENSPFOG00000020822) #24	ENSPFOG00000018358 #26	ENSPFOG00000018355 #26	ENSPFOG00000018347	rfk (ENSPFOG00000018341) #28	pcsk5b (ENSPFOG00000018200) #29	ubap2b (ENSPFOG00000018141)	ENSPFOG00000018138	RFESD (ENSPFOG00000022283)	gtf2h3 (ENSPFOG00000018098)	psmd9 (ENSPFOG00000018129)	ENSPFOG00000018086	CFAP251 (ENSPFOG00000018046)
Sailfin molly	MODERN SPECIES	1513													bri3bp (ENSPLAG00000019471)	wdr31 (ENSPLAG00000019498)	ENSPLAG00000019527	ENSPLAG00000019550 #22	vps13a (ENSPLAG00000019691) #23
Guppy	MODERN SPECIES	461	lmbrd2a (ENSPREG00000019428)	slc1a3a (ENSPREG00000019460)	nipbla (ENSPREG00000019501)	ndc80 (ENSPREG00000019564)	ENSPREG00000019596	EGFLAM (ENSPREG00000019629)	si:dkey-251i10.2 (ENSPREG00000019750)	opn4xb (ENSPREG00000019759)	pdlim5a (ENSPREG00000019780)	pdlim5a (ENSPREG00000019825)	bmpr1ba (ENSPREG00000019872)	UNC5C (ENSPREG00000019925)	bri3bp (ENSPREG00000020029)	wdr31 (ENSPREG00000020036)	ENSPREG00000020048	GNA14 (ENSPREG00000020077) #22	vps13a (ENSPREG00000020130) #23	ENSPREG00000020459	FOXB2 (ENSPREG00000020466) #24	ENSPREG00000020494 #26	ENSPREG00000020556	ENSPREG00000020594	rfk (ENSPREG00000020605) #28	ENSPREG00000020636	pcsk5b (ENSPREG00000020687) #29	ubap2b (ENSPREG00000020711)	RFESD (ENSPREG00000020754)	gtf2h3 (ENSPREG00000020772)	psmd9 (ENSPREG00000020803)	ENSPREG00000020813	CFAP251 (ENSPREG00000020845)
Platyfish	MODERN SPECIES	3	slc1a3a (ENSXMAG00000016896)	nipbla (ENSXMAG00000016926)	ndc80 (ENSXMAG00000017031)	GDNF (ENSXMAG00000027276)	EGFLAM (ENSXMAG00000017061)	ENSXMAG00000017087	opn4xb (ENSXMAG00000017088)	pdlim5a (ENSXMAG00000021636)	ENSXMAG00000021901	bmpr1ba (ENSXMAG00000017124)	UNC5C (ENSXMAG00000017169)	zgc:113274 (ENSXMAG00000027371)	bri3bp (ENSXMAG00000021682)	wdr31 (ENSXMAG00000017218)	ENSXMAG00000017236	GNA14 (ENSXMAG00000017274) #22	ENSXMAG00000020894	ENSXMAG00000029494 #23	ENSXMAG00000017284 #23	ENSXMAG00000020328	FOXB2 (ENSXMAG00000017381) #24	ENSXMAG00000029917 #26	ENSXMAG00000022765	ENSXMAG00000029302	rfk (ENSXMAG00000027050) #28	pcsk5b (ENSXMAG00000017401) #29	ubap2b (ENSXMAG00000017476)	ENSXMAG00000022468	ENSXMAG00000024910	gtf2h3 (ENSXMAG00000017500)	psmd9 (ENSXMAG00000017517)
NAME_4	ANCESTRAL SPECIES	33													ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422.c #26	ENSGT00940000159331.a	ENSGT00390000015537 #28	ENSGT00940000176240	ENSGT00940000155770.b.a #29	ENSGT00390000003453.a.c	ENSGT00940000154046.b	ENSGT00390000018225.B.b	ENSGT00390000013143	ENSGT00390000004147	ENSGT00940000154540.b	ENSGT00390000013370
Mummichog	MODERN SPECIES	390													bri3bp (ENSFHEG00000013104)	wdr31 (ENSFHEG00000013068)	ENSFHEG00000013065	GNA14 (ENSFHEG00000013060) #22	vps13a (ENSFHEG00000013025) #23	ENSFHEG00000012846	FOXB2 (ENSFHEG00000012829) #24	ENSFHEG00000012810 #26	ENSFHEG00000012772	ENSFHEG00000012758	ENSFHEG00000012748	rfk (ENSFHEG00000012742) #28	ENSFHEG00000012726	ENSFHEG00000012716 #29	pcsk5b (ENSFHEG00000012695) #29
Sheepshead minnow	MODERN SPECIES	783													bri3bp (ENSCVAG00000009455)	wdr31 (ENSCVAG00000009467)	ENSCVAG00000009502	ENSCVAG00000009769 #22	vps13a (ENSCVAG00000011159) #23	ENSCVAG00000011199	ENSCVAG00000011223	ENSCVAG00000011227
Osteoglossiformes	ANCESTRAL SPECIES	38	ENSGT00940000153434.c.a	ENSGT00390000002374	ENSGT00940000157487	ENSGT00390000008742	ENSGT00940000156437	ENSGT00390000003364	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.b ##10	ENSGT00940000158605	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000154644.jb.a	ENSGT00940000153241.A #16	ENSGT00390000013287 #17	ENSGT00940000162569.a	ENSGT00940000158510 #22	ENSGT00950000183083.a.d.b #23	ENSGT00940000161259.A	ENSGT00940000161970 #24	ENSGT00940000154422 #26	ENSGT00940000161348 #27	ENSGT00390000015537 #28	ENSGT00940000155770 #29	ENSGT00950000182989.D.a.b.b	ENSGT00390000013415.b	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004511.c.b	ENSGT00940000155135	ENSGT00940000156114.d	ENSGT00440000033609.w
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	7	zgc:136564 (ENSPKIG00000021683)	KIF27 (ENSPKIG00000021661)	gkap1 (ENSPKIG00000021632)	UBQLN1 (ENSPKIG00000021604)	IDNK (ENSPKIG00000021583)	FRMD3 (ENSPKIG00000021510)	ENSPKIG00000021426	ENSPKIG00000021404	ENSPKIG00000021395	ENSPKIG00000021347 ##10	ENSPKIG00000021298	ENSPKIG00000021237 ##10	psat1 (ENSPKIG00000021208) #16	CEP78 (ENSPKIG00000021157) #17	ENSPKIG00000021122	GNA14 (ENSPKIG00000021089) #22	vps13a (ENSPKIG00000020234) #23	ENSPKIG00000019845	ENSPKIG00000019698 #26	GCNT1 (ENSPKIG00000019595) #27	rfk (ENSPKIG00000019577) #28	pcsk5b (ENSPKIG00000019520) #29	PTPRA (ENSPKIG00000019404)	zgc:73226 (ENSPKIG00000019345)	PRADC1 (ENSPKIG00000019327)	ENSPKIG00000019280	oxt (ENSPKIG00000019246)	fabp1b.1 (ENSPKIG00000019196)	smyd1b (ENSPKIG00000019142)	DDRGK1 (ENSPKIG00000019095)	LZTS3 (ENSPKIG00000019072)
P. kingsleyae	MODERN SPECIES	221	ENSPKIG00000009605	tpst2 (ENSPKIG00000009621)	SEZ6L (ENSPKIG00000009657)	npm2b (ENSPKIG00000009700)	MYO18B (ENSPKIG00000009736)	ENSPKIG00000009807	grk3 (ENSPKIG00000009838)	acads (ENSPKIG00000009951)	cldn5b (ENSPKIG00000009972)	ENSPKIG00000009987	LETM2 (ENSPKIG00000010040)	NSD3 (ENSPKIG00000010104)	KCMF1 (ENSPKIG00000010141)	ntrk2b (ENSPKIG00000010169)	hnrpkl (ENSPKIG00000010245)	ENSPKIG00000010322 #22	ENSPKIG00000010524	smc5 (ENSPKIG00000010713)	tjp2a (ENSPKIG00000010798)	ENSPKIG00000010843	EFNA5 (ENSPKIG00000010862)	ENSPKIG00000010871	CCDC152 (ENSPKIG00000010892)	ghrb (ENSPKIG00000010983)	rimoc1 (ENSPKIG00000011126)	oxct1b (ENSPKIG00000011151)	c6 (ENSPKIG00000011218)	RGS7BP (ENSPKIG00000011267)	rnf180b (ENSPKIG00000011285)	ANK1 (ENSPKIG00000011319)	ewsr1a (ENSPKIG00000011381)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	8	hnrnpk (ENSSFOG00015009351)	zgc:136564 (ENSSFOG00015028369)	ENSSFOG00015009335	gkap1 (ENSSFOG00015009231)	UBQLN2 (ENSSFOG00015027552)	IDNK (ENSSFOG00015009211)	FRMD3 (ENSSFOG00015009076)	RASEF (ENSSFOG00015009014)	ENSSFOG00015008913 ##10	ENSSFOG00015008860	ENSSFOG00015008771 ##10	ENSSFOG00015024626	psat1 (ENSSFOG00015008732) #16	CEP78 (ENSSFOG00015008713) #17	ENSSFOG00015008692	GNA14 (ENSSFOG00015008639) #22	vps13a (ENSSFOG00015008516) #23	FOXB2 (ENSSFOG00015030254) #24	ENSSFOG00015008416 #26	GCNT1 (ENSSFOG00015008392) #27	rfk (ENSSFOG00015030589) #28	pcsk5b (ENSSFOG00015008347) #29	ptpra (ENSSFOG00015008326)	idh3b (ENSSFOG00015033228)	zgc:73226 (ENSSFOG00015029270)	PRADC1 (ENSSFOG00015028271)	ENSSFOG00015008220	oxt (ENSSFOG00015008145)	fabp1b.1 (ENSSFOG00015028435)	smyd1b (ENSSFOG00015008052)	SPR (ENSSFOG00015008017)
Asian bonytongue	MODERN SPECIES	21													kcmf1 (ENSSFOG00015030195)	ntrk2b (ENSSFOG00015023738)	HNRNPK (ENSSFOG00015023730)	ENSSFOG00015023725 #22	TMC2 (ENSSFOG00015023721)	smc5 (ENSSFOG00015023710)	ENSSFOG00015027089	ENSSFOG00015023685	ENSSFOG00015020169	ENSSFOG00015029686	ENSSFOG00015023137	ENSSFOG00015033104	ENSSFOG00015004043	ENSSFOG00015026811	ENSSFOG00015001586	ENSSFOG00015023186	ENSSFOG00015023118	ENSSFOG00015029960	ENSSFOG00015004235
Spotted gar	MODERN SPECIES	658	gldc (ENSLOCG00000010035)	oaz1b (ENSLOCG00000010027)	PRAG1 (ENSLOCG00000010023)	coq2 (ENSLOCG00000010011)	TMEM38B (ENSLOCG00000009996)	ZNF462 (ENSLOCG00000009983)	rad23b (ENSLOCG00000009976)	klf4 (ENSLOCG00000009967)	ENSLOCG00000009957	ENSLOCG00000009952	ENSLOCG00000009924 #13	TLE4 (ENSLOCG00000009894) #13	psat1 (ENSLOCG00000009885) #16	CEP78 (ENSLOCG00000009875) #17	ENSLOCG00000009866	GNA14 (ENSLOCG00000009852) #22	vps13a (ENSLOCG00000009844) #23	ENSLOCG00000017540	FOXB2 (ENSLOCG00000017539) #24	ENSLOCG00000009837 #26	prune2 (ENSLOCG00000009830) #26	GCNT1 (ENSLOCG00000017538) #27	rfk (ENSLOCG00000009824) #28	pcsk5b (ENSLOCG00000009798) #29	ostf1 (ENSLOCG00000009781) #30	nmrk1 (ENSLOCG00000009775) #31	ENSLOCG00000009770	ENSLOCG00000009755	carnmt1 (ENSLOCG00000009746) #32	trpm6 (ENSLOCG00000009721) #34	rorb (ENSLOCG00000009712) #35
Reedfish	MODERN SPECIES	13	ENSECRG00000000988	ENSECRG00000001024	gkap1 (ENSECRG00000001073)	UBQLN1 (ENSECRG00000001120)	IDNK (ENSECRG00000001151)	ENSECRG00000001169	FRMD3 (ENSECRG00000001204)	RASEF (ENSECRG00000001298)	ENSECRG00000001344	ENSECRG00000001414 #13	ENSECRG00000001508	TLE4 (ENSECRG00000001564) #13	psat1 (ENSECRG00000001633) #16	CEP78 (ENSECRG00000001656) #17	ENSECRG00000001693	GNA14 (ENSECRG00000001717) #22	vps13a (ENSECRG00000001789) #23	ENSECRG00000002009	CPLANE1 (ENSECRG00000002039)	nipbla (ENSECRG00000002104)	slc1a3b (ENSECRG00000002241)	RANBP3L (ENSECRG00000002258)	nadk2 (ENSECRG00000002285)	skp2 (ENSECRG00000002305)	lmbrd2a (ENSECRG00000002356)	UGT3A2 (ENSECRG00000002455)	capslb (ENSECRG00000002477)	ENSECRG00000002509	ENSECRG00000002548	prlra (ENSECRG00000002581)	agxt2 (ENSECRG00000002604)