Gnathostomata	ANCESTRAL SPECIES	1015														ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000163316 #22
Euteleostomi	ANCESTRAL SPECIES	102	ENSGT00940000161225	ENSGT00950000183104.A.a.a	ENSGT01050000244838.H.d	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.b	ENSGT00940000159643	ENSGT00940000157285	ENSGT00950000182993.C	ENSGT00530000063561	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14
Sarcopterygii	ANCESTRAL SPECIES	100												ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000011196 #12	ENSGT00940000161527 #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a	ENSGT00940000161273
Tetrapoda	ANCESTRAL SPECIES	8	ENSGT00950000183144.B #36	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00390000002634.a	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000011196 #12	ENSGT00940000161527 #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a	ENSGT00940000161273
Anura	DUPLICATION
Anura	ANCESTRAL SPECIES																	ENSGT00940000163316.d #22
Frog	MODERN SPECIES	4	tal1 (ENSXETG00000041260) #7	pdzk1ip1 (ENSXETG00000032460) #8	cyp4b1.4 (ENSXETG00000024496) #9	cyp4b1.5 (ENSXETG00000040829) #10	cyp4b1 (ENSXETG00000024498) #11	efcab14 (ENSXETG00000016352) #12	ccnb1.2 (ENSXETG00000016354) #13	atpaf1 (ENSXETG00000024499) #14	mob3c (ENSXETG00000016355) #15	mknk1 (ENSXETG00000016357) #16	ENSXETG00000035045 #17	TMEM275 (ENSXETG00000045969) #18	dmbx1 (ENSXETG00000004360) #19	ENSXETG00000042239 #20	ENSXETG00000043105 #21	faah.3 (ENSXETG00000004361) #22	faah.1 (ENSXETG00000024500) #23	faah.2 (ENSXETG00000004365) #24	nsun4 (ENSXETG00000024501) #25	uqcrh (ENSXETG00000042017) #26	lrrc41 (ENSXETG00000036043) #27	rad54l (ENSXETG00000004369) #28	ENSXETG00000045488 #29	ENSXETG00000046808 #30	lurap1 (ENSXETG00000024502) #31	pomgnt1 (ENSXETG00000004370) #32	tspan1 (ENSXETG00000004371) #33	pik3r3 (ENSXETG00000003253) #34	mast2 (ENSXETG00000003254) #35	izumo1r (ENSXETG00000003259) #36	ENSXETG00000037795 #37
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	11	ENSLLEG00000018833 ##30	TSPAN1 (ENSLLEG00000019005) #33	POMGNT1 (ENSLLEG00000019672) #32	ENSLLEG00000020075	LURAP1 (ENSLLEG00000020094) #31	ENSLLEG00000020116	RAD54L (ENSLLEG00000020151) #28	LRRC41 (ENSLLEG00000020569) #27	ENSLLEG00000020771	NSUN4 (ENSLLEG00000020795) #25	FAAH (ENSLLEG00000020919) #24	ENSLLEG00000021081	ENSLLEG00000021125 #23	ENSLLEG00000021382 #22	ENSLLEG00000021738	ENSLLEG00000021759 #22	ENSLLEG00000021917 ##29	ENSLLEG00000021947	DMBX1 (ENSLLEG00000021978) #19	ENSLLEG00000022096	ENSLLEG00000022118	ENSLLEG00000022132 #16	MOB3C (ENSLLEG00000022215) #15	ENSLLEG00000022264 ##30	ENSLLEG00000022306 #11	ENSLLEG00000022482 #9	ENSLLEG00000022725 #11	ENSLLEG00000024624 #11	ENSLLEG00000028380 #9	ENSLLEG00000028546	TAL1 (ENSLLEG00000028576) #7
Leishan spiny toad	MODERN SPECIES	11	ENSLLEG00000018129 ##30	PIK3R3 (ENSLLEG00000018155) #34	ENSLLEG00000018833 ##30	TSPAN1 (ENSLLEG00000019005) #33	POMGNT1 (ENSLLEG00000019672) #32	ENSLLEG00000020075	LURAP1 (ENSLLEG00000020094) #31	ENSLLEG00000020116	RAD54L (ENSLLEG00000020151) #28	LRRC41 (ENSLLEG00000020569) #27	ENSLLEG00000020771	NSUN4 (ENSLLEG00000020795) #25	FAAH (ENSLLEG00000020919) #24	ENSLLEG00000021081	ENSLLEG00000021125 #23	ENSLLEG00000021382 #22	ENSLLEG00000021738	ENSLLEG00000021759 #22	ENSLLEG00000021917 ##29	ENSLLEG00000021947	DMBX1 (ENSLLEG00000021978) #19	ENSLLEG00000022096	ENSLLEG00000022118	ENSLLEG00000022132 #16	MOB3C (ENSLLEG00000022215) #15	ENSLLEG00000022264 ##30	ENSLLEG00000022306 #11	ENSLLEG00000022482 #9	ENSLLEG00000022725 #11	ENSLLEG00000024624 #11	ENSLLEG00000028380 #9
Anura	ANCESTRAL SPECIES	6	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.c #23	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00940000154586.a #13	ENSGT00390000011196 #12	ENSGT00940000161527.a.b.a #11	ENSGT00940000161527.b #9	ENSGT00940000161527.a.b.b #10	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000162270
Leishan spiny toad	MODERN SPECIES	11	MAST2 (ENSLLEG00000028731) #35	ENSLLEG00000018129 ##30	PIK3R3 (ENSLLEG00000018155) #34	ENSLLEG00000018833 ##30	TSPAN1 (ENSLLEG00000019005) #33	POMGNT1 (ENSLLEG00000019672) #32	ENSLLEG00000020075	LURAP1 (ENSLLEG00000020094) #31	ENSLLEG00000020116	RAD54L (ENSLLEG00000020151) #28	LRRC41 (ENSLLEG00000020569) #27	ENSLLEG00000020771	NSUN4 (ENSLLEG00000020795) #25	FAAH (ENSLLEG00000020919) #24	ENSLLEG00000021081	ENSLLEG00000021125 #23	ENSLLEG00000021382 #22	ENSLLEG00000021738	ENSLLEG00000021759 #22	ENSLLEG00000021917 ##29	ENSLLEG00000021947	DMBX1 (ENSLLEG00000021978) #19	ENSLLEG00000022096	ENSLLEG00000022118	ENSLLEG00000022132 #16	MOB3C (ENSLLEG00000022215) #15	ENSLLEG00000022264 ##30	ENSLLEG00000022306 #11	ENSLLEG00000022482 #9	ENSLLEG00000022725 #11	ENSLLEG00000024624 #11
Frog	MODERN SPECIES	4	atp6v0b (ENSXETG00000003260)	ENSXETG00000037795 #37	izumo1r (ENSXETG00000003259) #36	mast2 (ENSXETG00000003254) #35	pik3r3 (ENSXETG00000003253) #34	tspan1 (ENSXETG00000004371) #33	pomgnt1 (ENSXETG00000004370) #32	lurap1 (ENSXETG00000024502) #31	ENSXETG00000046808 #30	ENSXETG00000045488 #29	rad54l (ENSXETG00000004369) #28	lrrc41 (ENSXETG00000036043) #27	uqcrh (ENSXETG00000042017) #26	nsun4 (ENSXETG00000024501) #25	faah.2 (ENSXETG00000004365) #24	faah.1 (ENSXETG00000024500) #23	faah.3 (ENSXETG00000004361) #22	ENSXETG00000043105 #21	ENSXETG00000042239 #20	dmbx1 (ENSXETG00000004360) #19	TMEM275 (ENSXETG00000045969) #18	ENSXETG00000035045 #17	mknk1 (ENSXETG00000016357) #16	mob3c (ENSXETG00000016355) #15	atpaf1 (ENSXETG00000024499) #14	ccnb1.2 (ENSXETG00000016354) #13	efcab14 (ENSXETG00000016352) #12	cyp4b1 (ENSXETG00000024498) #11	cyp4b1.5 (ENSXETG00000040829) #10	cyp4b1.4 (ENSXETG00000024496) #9	pdzk1ip1 (ENSXETG00000032460) #8
Amniota	ANCESTRAL SPECIES	9	ENSGT00390000016650	ENSGT00940000167241	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540	ENSGT00940000162270
Mammalia	ANCESTRAL SPECIES	47	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00980000201734	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a	ENSGT00940000161273
Theria	ANCESTRAL SPECIES	3	ENSGT00390000016650	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000155173	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00390000016650	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000155173.w.b	ENSGT00940000161441.a	ENSGT00940000155173.x.b	ENSGT00940000155173.x.a	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Opossum	MODERN SPECIES	1	ENSMODG00000002288	ENSMODG00000002257	GPBP1L1 (ENSMODG00000002239)	TMEM69 (ENSMODG00000043204)	IPP (ENSMODG00000002208)	ENSMODG00000002145 ##35	ENSMODG00000002139 #34	TSPAN1 (ENSMODG00000002113) #33	POMGNT1 (ENSMODG00000002106) #32	LURAP1 (ENSMODG00000049641) #31	ENSMODG00000002032 #28	LRRC41 (ENSMODG00000002018) #27	ENSMODG00000001998	NSUN4 (ENSMODG00000001996) #25	FAAH (ENSMODG00000001986) #24	ENSMODG00000029161 #22	DMBX1 (ENSMODG00000001963) #19	TMEM275 (ENSMODG00000025359) #18	KNCN (ENSMODG00000041143)	MKNK1 (ENSMODG00000001951)	MOB3C (ENSMODG00000048219) #15	ATPAF1 (ENSMODG00000001918) #14	EFCAB14 (ENSMODG00000001906) #12	ENSMODG00000001890	ENSMODG00000045742	ENSMODG00000001709	ENSMODG00000025699	ENSMODG00000001521	ENSMODG00000001509 #8	TAL1 (ENSMODG00000001502) #7	STIL (ENSMODG00000001494)
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00390000016650	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000155173.w.b	ENSGT00940000155173.w.a	ENSGT00940000161441.a	ENSGT00940000155173.x.b	ENSGT00940000155173.x.a	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000024473	AKR1A1 (ENSSHAG00000008420)	ENSSHAG00000008065	TMEM69 (ENSSHAG00000007098)	GPBP1L1 (ENSSHAG00000025227)	IPP (ENSSHAG00000025029)	MAST2 (ENSSHAG00000004259) #35	PIK3R3 (ENSSHAG00000025732) #34	TSPAN1 (ENSSHAG00000027698) #33	POMGNT1 (ENSSHAG00000002657) #32	RAD54L (ENSSHAG00000000110) #28	LRRC41 (ENSSHAG00000001887) #27	ENSSHAG00000031240 #31	NSUN4 (ENSSHAG00000002565) #25	FAAH (ENSSHAG00000007780) #24	ENSSHAG00000006770 #22	DMBX1 (ENSSHAG00000025794) #19	TMEM275 (ENSSHAG00000031634) #18	KNCN (ENSSHAG00000016695)	ENSSHAG00000004306 #16	MOB3C (ENSSHAG00000025198) #15	ATPAF1 (ENSSHAG00000032278) #14	TEX38 (ENSSHAG00000002666)	EFCAB14 (ENSSHAG00000022941) #12	ENSSHAG00000000201	ENSSHAG00000029874	ENSSHAG00000024463	ENSSHAG00000031091	ENSSHAG00000002195	ENSSHAG00000003731	ENSSHAG00000030071
Eutheria	ANCESTRAL SPECIES		ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00940000163316 #22
Afrotheria	ANCESTRAL SPECIES	42	ENSGT00390000016650	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22
Afrotheria_a	ANCESTRAL SPECIES	42	ENSGT00390000016650	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22
Elephant	MODERN SPECIES	332	NASP (ENSLAFG00000008715)	CCDC17 (ENSLAFG00000008721)	ENSLAFG00000008723	TMEM69 (ENSLAFG00000008731)	IPP (ENSLAFG00000008733)	MAST2 (ENSLAFG00000015248) #35	PIK3R3 (ENSLAFG00000003690) #34	TSPAN1 (ENSLAFG00000003695) #33	POMGNT1 (ENSLAFG00000004478) #32	LURAP1 (ENSLAFG00000003696) #31	RAD54L (ENSLAFG00000007583) #28	LRRC41 (ENSLAFG00000007586) #27	ENSLAFG00000007590 #26	NSUN4 (ENSLAFG00000012403) #25	FAAH (ENSLAFG00000000906) #24	ENSLAFG00000028034 #22
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00500000045816	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Primates	ANCESTRAL SPECIES	4	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00500000045816	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000155173	ENSGT00940000160927.e	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00500000045816	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000160927.e	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Lemuriformes	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00500000045816	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000160927.e	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Mouse lemur	MODERN SPECIES	11	IPP (ENSMICG00000007162)	MAST2 (ENSMICG00000001029) #35	ENSMICG00000016854 #34	P3R3URF (ENSMICG00000044954)	TSPAN1 (ENSMICG00000003260) #33	ENSMICG00000038639 #32	LURAP1 (ENSMICG00000045681) #31	RAD54L (ENSMICG00000003266) #28	LRRC41 (ENSMICG00000003273) #27	ENSMICG00000008251 #26	ENSMICG00000029180	ENSMICG00000037757	NSUN4 (ENSMICG00000043368) #25	ENSMICG00000035628	FAAH (ENSMICG00000010595) #24	ENSMICG00000041885 #22	DMBX1 (ENSMICG00000045428) #19	TMEM275 (ENSMICG00000043204) #18	KNCN (ENSMICG00000037994)	ENSMICG00000000071 #16	ATPAF1 (ENSMICG00000000075) #14	TEX38 (ENSMICG00000000074)	EFCAB14 (ENSMICG00000047159) #12	CYP4A11 (ENSMICG00000000965)	ENSMICG00000031270	CYP4B1 (ENSMICG00000000962)	PDZK1IP1 (ENSMICG00000043731) #8	TAL1 (ENSMICG00000045732) #7	STIL (ENSMICG00000005402)	CMPK1 (ENSMICG00000005386)	FOXE3 (ENSMICG00000029422)
Bushbaby	MODERN SPECIES	325	CCDC17 (ENSOGAG00000009331)	ENSOGAG00000028598	GPBP1L1 (ENSOGAG00000004134)	IPP (ENSOGAG00000004140)	MAST2 (ENSOGAG00000006435) #35	PIK3R3 (ENSOGAG00000006446) #34	POMGNT1 (ENSOGAG00000003522) #32	TSPAN1 (ENSOGAG00000029255) #33	LURAP1 (ENSOGAG00000000910) #31	RAD54L (ENSOGAG00000001132) #28	LRRC41 (ENSOGAG00000033806) #27	ENSOGAG00000001134 #26	NSUN4 (ENSOGAG00000014079) #25	ENSOGAG00000030900	FAAH (ENSOGAG00000003542) #24	ENSOGAG00000027019 #22	DMBX1 (ENSOGAG00000005074) #19	KNCN (ENSOGAG00000031622)	ENSOGAG00000014430 #16	MOB3C (ENSOGAG00000032036) #15	ATPAF1 (ENSOGAG00000014436) #14	EFCAB14 (ENSOGAG00000014445) #12	ENSOGAG00000027560	CYP4B1 (ENSOGAG00000014453)	ENSOGAG00000014461	CYP4X1 (ENSOGAG00000016547)	PDZK1IP1 (ENSOGAG00000026954) #8	TAL1 (ENSOGAG00000016551) #7	STIL (ENSOGAG00000016561)	CMPK1 (ENSOGAG00000026904)	FOXD2 (ENSOGAG00000003055)
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000155173	ENSGT00940000160927.e	ENSGT00940000160927.f	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00910000147102	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000155173	ENSGT00940000160927.e	ENSGT00940000160927.f	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00390000015318	ENSGT00940000158629	ENSGT01050000245298	ENSGT00940000155705.b #35	ENSGT00910000147102	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.h.a.a #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00620000089223	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000155173	ENSGT00940000160927.e	ENSGT00940000160927.f	ENSGT00940000154660.b #8
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000158629	ENSGT01050000245298	ENSGT00940000155705.b #35	ENSGT00910000147102	ENSGT00390000012178.g.a.a	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.h.a.a #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00620000089223	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196.e #12	ENSGT00940000161441	ENSGT00940000163504.c	ENSGT00940000155173	ENSGT00940000160927.e	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00390000015318	ENSGT00940000158629	ENSGT01050000245298	ENSGT00940000155705.b #35	ENSGT00910000147102	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.h.a.b #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00620000089223	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196.e #12	ENSGT00940000161441	ENSGT00940000163504.c	ENSGT00940000160927.e	ENSGT00940000163504.d	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Vervet Monkey	MODERN SPECIES	12	CCDC17 (ENSCSAG00000001219)	ENSCSAG00000001220	GPBP1L1 (ENSCSAG00000001221)	TMEM69 (ENSCSAG00000001222)	IPP (ENSCSAG00000001223)	MAST2 (ENSCSAG00000001224) #35	PIK3R3 (ENSCSAG00000001225) #34	TSPAN1 (ENSCSAG00000001226) #33	POMGNT1 (ENSCSAG00000001227) #32	LURAP1 (ENSCSAG00000001228) #31	RAD54L (ENSCSAG00000001229) #28	LRRC41 (ENSCSAG00000001230) #27	ENSCSAG00000001231 #26	NSUN4 (ENSCSAG00000001232) #25	FAAH (ENSCSAG00000001233) #24	ENSCSAG00000001234 #22	DMBX1 (ENSCSAG00000001235) #19	KNCN (ENSCSAG00000001236)	MKNK1 (ENSCSAG00000001237)	MOB3C (ENSCSAG00000001238) #15	ATPAF1 (ENSCSAG00000001239) #14	TEX38 (ENSCSAG00000001240)	EFCAB14 (ENSCSAG00000001241) #12	CYP4B1 (ENSCSAG00000001242)	ENSCSAG00000001243	CYP4X1 (ENSCSAG00000001244)	CYP4A22 (ENSCSAG00000001245)	ENSCSAG00000000142	PDZK1IP1 (ENSCSAG00000001246) #8	TAL1 (ENSCSAG00000001247) #7	STIL (ENSCSAG00000001248)
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000015318	ENSGT00940000158629	ENSGT01050000245298	ENSGT00940000155705.b #35	ENSGT00910000147102	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.h.a.b #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00620000089223	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196.e #12	ENSGT00940000161441	ENSGT00940000163504.c.b	ENSGT00940000160927.e	ENSGT00940000163504.c.a	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Macaca	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00910000147102	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.h.a.a.b #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00620000089223	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196.e #12	ENSGT00940000161441	ENSGT00940000163504.c.b	ENSGT00940000160927.e	ENSGT00940000163504.c.a	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Macaca_a	ANCESTRAL SPECIES		ENSGT00390000016650	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318.f	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00620000089223	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196.e #12	ENSGT00940000161441	ENSGT00940000163504.c.b	ENSGT00940000160927.e	ENSGT00940000163504.c.a	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Rhesus	MODERN SPECIES		AKR1A1 (ENSMMUG00000049745)	NASP (ENSMMUG00000023431)	ENSMMUG00000059762	GPBP1L1 (ENSMMUG00000001960)	ENSMMUG00000040638	IPP (ENSMMUG00000001831)	MAST2 (ENSMMUG00000015371) #35	PIK3R3 (ENSMMUG00000015080) #34	TSPAN1 (ENSMMUG00000016452) #33	POMGNT1 (ENSMMUG00000015078) #32	LURAP1 (ENSMMUG00000063599) #31	RAD54L (ENSMMUG00000011568) #28	LRRC41 (ENSMMUG00000032149) #27	UQCRH (ENSMMUG00000002714) #24	ENSMMUG00000055679	ENSMMUG00000056382 #22	DMBX1 (ENSMMUG00000014634) #19	TMEM275 (ENSMMUG00000054075) #18	KNCN (ENSMMUG00000044038)	MKNK1 (ENSMMUG00000020162)	MOB3C (ENSMMUG00000063131) #15	ENSMMUG00000056620	ATPAF1 (ENSMMUG00000004863) #14	TEX38 (ENSMMUG00000004864)	ENSMMUG00000056043 #12	CYP4B1 (ENSMMUG00000019873)	CYP4A45 (ENSMMUG00000019871)	CYP4X1 (ENSMMUG00000018867)	CYP4A11 (ENSMMUG00000032143)	PDZK1IP1 (ENSMMUG00000061850) #7	STIL (ENSMMUG00000020389)
Crab-eating macaque	MODERN SPECIES		NASP (ENSMFAG00000043112)	ENSMFAG00000000878	GPBP1L1 (ENSMFAG00000038278)	AKR1A1 (ENSMFAG00000036808)	ENSMFAG00000000895	IPP (ENSMFAG00000043099)	MAST2 (ENSMFAG00000032736) #35	PIK3R3 (ENSMFAG00000033868) #34	P3R3URF (ENSMFAG00000036616)	TSPAN1 (ENSMFAG00000042909) #33	POMGNT1 (ENSMFAG00000000070) #32	LURAP1 (ENSMFAG00000036741) #31	RAD54L (ENSMFAG00000031241) #28	LRRC41 (ENSMFAG00000039635) #27	NSUN4 (ENSMFAG00000036603) #25	ENSMFAG00000065640 #22	DMBX1 (ENSMFAG00000058375) #19	FAAH (ENSMFAG00000046153) #24	ENSMFAG00000016019	KNCN (ENSMFAG00000045471)	MKNK1 (ENSMFAG00000026976)	MOB3C (ENSMFAG00000032003) #15	TEX38 (ENSMFAG00000039763)	ENSMFAG00000038571 #12	CYP4B1 (ENSMFAG00000031207)	CYP4A11 (ENSMFAG00000032544)	CYP4X1 (ENSMFAG00000000631)	CYP4A45P (ENSMFAG00000042796)	PDZK1IP1 (ENSMFAG00000002324) #8	TAL1 (ENSMFAG00000047639) #7	ENSMFAG00000063835
Platyrrhini	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00910000147102	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00950000183210.d.a.c.b.a.b	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000160927.e	ENSGT00940000160927.f	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Cebidae	ANCESTRAL SPECIES	1	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00910000147102	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00950000183210.d.a.c.b.a.b	ENSGT00400000024146	ENSGT00940000162886	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000160927.e	ENSGT00940000160927.f	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Cebidae_a	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00910000147102	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00950000183210.d.a.c.b.a.b	ENSGT00400000024146	ENSGT00940000162886	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000160927.e	ENSGT00940000160927.f	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Bolivian squirrel monkey	MODERN SPECIES	130	GPBP1L1 (ENSSBOG00000028478)	IPP (ENSSBOG00000025688)	ENSSBOG00000025173	MAST2 (ENSSBOG00000026992) #35	ENSSBOG00000035141	PIK3R3 (ENSSBOG00000024946) #34	P3R3URF (ENSSBOG00000025347)	TSPAN1 (ENSSBOG00000035428) #33	POMGNT1 (ENSSBOG00000022467) #32	LURAP1 (ENSSBOG00000032879) #31	RAD54L (ENSSBOG00000024672) #28	LRRC41 (ENSSBOG00000026644) #27	ENSSBOG00000033788 #26	NSUN4 (ENSSBOG00000021418) #25	FAAH (ENSSBOG00000014904) #24	ENSSBOG00000033590 #22	DMBX1 (ENSSBOG00000032738) #19	ENSSBOG00000034928	KNCN (ENSSBOG00000034951)	MKNK1 (ENSSBOG00000025387)	ATPAF1 (ENSSBOG00000036018) #14	TEX38 (ENSSBOG00000024302)	EFCAB14 (ENSSBOG00000034890) #12	ENSSBOG00000030826	CYP4A11 (ENSSBOG00000015955)	CYP4X1 (ENSSBOG00000029052)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441	ENSGT00940000163504	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.c.b.b	ENSGT00940000161441.c.b.a	ENSGT00940000163504	ENSGT00940000161441.d	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8
Artiodactyla	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Pecora	ANCESTRAL SPECIES	2	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.k.a.a.a	ENSGT00940000155173.k.a.a.b.b	ENSGT00940000155173.k.a.a.b.a	ENSGT00940000155173.k.b	ENSGT00940000160927	ENSGT00940000154660.b #8
Yarkand deer	MODERN SPECIES	12	TMEM69 (ENSCHYG00000026064)	IPP (ENSCHYG00000026048)	ENSCHYG00000026038	MAST2 (ENSCHYG00000025735) #35	PIK3R3 (ENSCHYG00000025628) #34	P3R3URF (ENSCHYG00000025545)	TSPAN1 (ENSCHYG00000025510) #33	POMGNT1 (ENSCHYG00000025315) #32	LURAP1 (ENSCHYG00000025283) #31	ENSCHYG00000025272	RAD54L (ENSCHYG00000025239) #28	LRRC41 (ENSCHYG00000025182) #27	ENSCHYG00000025148 #26	ENSCHYG00000025121	FAAH (ENSCHYG00000025069) #24	ENSCHYG00000024986 #22	DMBX1 (ENSCHYG00000024937) #19	TMEM275 (ENSCHYG00000024933) #18	KNCN (ENSCHYG00000024910)	MKNK1 (ENSCHYG00000024738)	MOB3C (ENSCHYG00000024692) #15	TEX38 (ENSCHYG00000024663)	EFCAB14 (ENSCHYG00000024392) #12	CYP4B1 (ENSCHYG00000024314)	ENSCHYG00000023760	ENSCHYG00000023627	ENSCHYG00000023374	ENSCHYG00000023298	CYP4X1 (ENSCHYG00000023196)	PDZK1IP1 (ENSCHYG00000023171) #8	TAL1 (ENSCHYG00000023140) #7
Percora_a	ANCESTRAL SPECIES	1	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.k.a.a.a	ENSGT00940000155173.k.a.a.b.b	ENSGT00940000155173.k.a.a.b.a	ENSGT00940000155173.k.b	ENSGT00940000160927	ENSGT00940000154660.b #8
Bovidae	ANCESTRAL SPECIES	1	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.k.a.a.a	ENSGT00940000155173.k.a.a.b.b	ENSGT00940000155173.k.a.a.b.a	ENSGT00940000155173.k.b	ENSGT00940000160927	ENSGT00940000154660.b #8
Caprinae	ANCESTRAL SPECIES	2	ENSGT00420000029753.b.f	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765.g #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.k.a.a.a	ENSGT00940000155173.k.a.a.b.b	ENSGT00940000155173.k.a.a.b.a.c	ENSGT00940000155173.k.a.a.b.a.d	ENSGT00940000155173.k.b	ENSGT00940000160927
Rambouillet Sheep	MODERN SPECIES		TMEM69 (ENSOARG00020000462)	IPP (ENSOARG00020000478)	ENSOARG00020000500	MAST2 (ENSOARG00020000575) #35	PIK3R3 (ENSOARG00020000796) #34	P3R3URF (ENSOARG00020000858)	TSPAN1 (ENSOARG00020000865) #33	POMGNT1 (ENSOARG00020000885) #32	LURAP1 (ENSOARG00020000928) #31	RAD54L (ENSOARG00020000936) #28	LRRC41 (ENSOARG00020000971) #27	UQCRH (ENSOARG00020000996) #26	NSUN4 (ENSOARG00020001022) #25	ENSOARG00020001036	FAAH (ENSOARG00020001048) #24	ENSOARG00020001062 #22	DMBX1 (ENSOARG00020001077) #19	TMEM275 (ENSOARG00020001085) #18	KNCN (ENSOARG00020001096)	MKNK1 (ENSOARG00020001122)	MOB3C (ENSOARG00020001167) #15	ATPAF1 (ENSOARG00020001189) #14	TEX38 (ENSOARG00020001250)	EFCAB14 (ENSOARG00020001264) #12	CYP4B1 (ENSOARG00020001284)	ENSOARG00020001350	ENSOARG00020001482	ENSOARG00020001546	ENSOARG00020001738	ENSOARG00020001814	CYP4X1 (ENSOARG00020002290)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.k.a.a.a	ENSGT00940000155173.k.a.a.b.a	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
American bison	MODERN SPECIES	3172	CCDC17 (ENSBBBG00000015992)	GPBP1L1 (ENSBBBG00000015933)	TMEM69 (ENSBBBG00000015914)	IPP (ENSBBBG00000015907)	MAST2 (ENSBBBG00000015890) #35	PIK3R3 (ENSBBBG00000015789) #34	P3R3URF (ENSBBBG00000015715)	TSPAN1 (ENSBBBG00000015713) #33	POMGNT1 (ENSBBBG00000003921) #32	LURAP1 (ENSBBBG00000003915) #31	RAD54L (ENSBBBG00000015678) #28	LRRC41 (ENSBBBG00000015647) #27	ENSBBBG00000003452 #26	NSUN4 (ENSBBBG00000003464) #25	FAAH (ENSBBBG00000015607) #24	ENSBBBG00000003883 #22	DMBX1 (ENSBBBG00000015504) #19	KNCN (ENSBBBG00000003859)	MKNK1 (ENSBBBG00000015483)	MOB3C (ENSBBBG00000003833) #15	ATPAF1 (ENSBBBG00000008375) #14	TEX38 (ENSBBBG00000015355)	EFCAB14 (ENSBBBG00000003824) #12
Bos	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT01100000263480.a.b.a.b.a.a.b.b.b	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.k.a.a.a	ENSGT00940000155173.k.a.a.b.a.b	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Bos_a	ANCESTRAL SPECIES	1	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT01100000263480.a.b.a.b.a.a.b.b.b	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.k.a.a.a	ENSGT00940000155173.k.a.a.b.a.b	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Wild yak	MODERN SPECIES	630	CCDC17 (ENSBMUG00000017536)	GPBP1L1 (ENSBMUG00000017580)	TMEM69 (ENSBMUG00000017619)	IPP (ENSBMUG00000017678)	MAST2 (ENSBMUG00000018202) #35	PIK3R3 (ENSBMUG00000018587) #34	P3R3URF (ENSBMUG00000018621)	TSPAN1 (ENSBMUG00000018631) #33	POMGNT1 (ENSBMUG00000018708) #32	LURAP1 (ENSBMUG00000018743) #31	RAD54L (ENSBMUG00000018748) #28	LRRC41 (ENSBMUG00000018769) #27	ENSBMUG00000018791 #26	NSUN4 (ENSBMUG00000018801) #25	FAAH (ENSBMUG00000018835) #24	ENSBMUG00000018858 #22	DMBX1 (ENSBMUG00000018871) #19	KNCN (ENSBMUG00000018887)	MKNK1 (ENSBMUG00000019092)	MOB3C (ENSBMUG00000019135) #15	ATPAF1 (ENSBMUG00000019157) #14	TEX38 (ENSBMUG00000019206)	EFCAB14 (ENSBMUG00000019237) #12	CYP4B1 (ENSBMUG00000019275)	ENSBMUG00000019388
Bos_b	ANCESTRAL SPECIES	1	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT01100000263480.a.b.a.b.a.a.b.b.b	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.k.a.a.a	ENSGT00940000155173.k.a.a.b.a.a	ENSGT00940000155173.k.a.a.b.a.b	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Cow	MODERN SPECIES	22	TMEM69 (ENSBTAG00000052979)	ENSBTAG00000051822	IPP (ENSBTAG00000016377)	MAST2 (ENSBTAG00000020444) #35	PIK3R3 (ENSBTAG00000002979) #34	P3R3URF (ENSBTAG00000048829)	TSPAN1 (ENSBTAG00000013320) #33	LURAP1 (ENSBTAG00000024144) #31	POMGNT1 (ENSBTAG00000013322) #32	RAD54L (ENSBTAG00000019901) #28	LRRC41 (ENSBTAG00000045664) #27	UQCRH (ENSBTAG00000009603) #26	NSUN4 (ENSBTAG00000015891) #25	FAAH (ENSBTAG00000007507) #24	ENSBTAG00000054510	ENSBTAG00000037858 #22	DMBX1 (ENSBTAG00000009625) #19	TMEM275 (ENSBTAG00000053814) #18	KNCN (ENSBTAG00000030532)	MKNK1 (ENSBTAG00000019933)	MOB3C (ENSBTAG00000023551) #15	ATPAF1 (ENSBTAG00000000094) #14	TEX38 (ENSBTAG00000046812)	EFCAB14 (ENSBTAG00000000097) #12	CYP4B1 (ENSBTAG00000011976)	ENSBTAG00000050746	CYP4A22 (ENSBTAG00000013481)	CYP4A59 (ENSBTAG00000000229)	CYP4A11 (ENSBTAG00000037890)	CYP4X1 (ENSBTAG00000015647)	PDZK1IP1 (ENSBTAG00000002555) #8
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005011146	GPBP1L1 (ENSBIXG00005011221)	TMEM69 (ENSBIXG00005001050)	IPP (ENSBIXG00005011243)	MAST2 (ENSBIXG00005001084) #35	PIK3R3 (ENSBIXG00005011410) #34	P3R3URF (ENSBIXG00005011452)	TSPAN1 (ENSBIXG00005011467) #33	POMGNT1 (ENSBIXG00005011564) #32	LURAP1 (ENSBIXG00005011609) #31	RAD54L (ENSBIXG00005011638) #28	LRRC41 (ENSBIXG00005001150) #27	ENSBIXG00005011690 #26	NSUN4 (ENSBIXG00005011707) #25	FAAH (ENSBIXG00005011771) #24	ENSBIXG00005011831 #22	DMBX1 (ENSBIXG00005011839) #19	TMEM275 (ENSBIXG00005001181) #18	KNCN (ENSBIXG00005011880)	MKNK1 (ENSBIXG00005006328)	MOB3C (ENSBIXG00005001231) #15	ATPAF1 (ENSBIXG00005012121) #14	TEX38 (ENSBIXG00005012152)	EFCAB14 (ENSBIXG00005012188) #12	CYP4B1 (ENSBIXG00005001270)	ENSBIXG00005012345	CYP4X1 (ENSBIXG00005012436)	PDZK1IP1 (ENSBIXG00005012472) #8	TAL1 (ENSBIXG00005001347) #7	STIL (ENSBIXG00005001365)	CMPK1 (ENSBIXG00005012554)
Siberian musk deer	MODERN SPECIES	340			ENSMMSG00000004500	MAST2 (ENSMMSG00000004421) #35	PIK3R3 (ENSMMSG00000004360) #34	P3R3URF (ENSMMSG00000004335)	TSPAN1 (ENSMMSG00000004321) #33	POMGNT1 (ENSMMSG00000019816) #32	LURAP1 (ENSMMSG00000019798) #31	RAD54L (ENSMMSG00000019732) #28	LRRC41 (ENSMMSG00000019692) #27	ENSMMSG00000019655 #26	ENSMMSG00000019597	NSUN4 (ENSMMSG00000019582) #25	FAAH (ENSMMSG00000019549) #24	ENSMMSG00000019482 #22	DMBX1 (ENSMMSG00000019443) #19	TMEM275 (ENSMMSG00000019433) #18	KNCN (ENSMMSG00000019379)	MKNK1 (ENSMMSG00000019302)	MOB3C (ENSMMSG00000019263) #15	ENSMMSG00000019244	ATPAF1 (ENSMMSG00000019161) #14	TEX38 (ENSMMSG00000019113)	EFCAB14 (ENSMMSG00000019009) #12	CYP4B1 (ENSMMSG00000018896)	ENSMMSG00000018832	ENSMMSG00000018812	ENSMMSG00000018754	ENSMMSG00000018560	ENSMMSG00000018495
Suina	ANCESTRAL SPECIES	27	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00500000045816	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.g.b	ENSGT00940000154660.b.d.b #8	ENSGT00940000155173.g.a	ENSGT00940000160927	ENSGT00940000154660.b.c #8	ENSGT00940000159889 #7
Chacoan peccary	MODERN SPECIES	54	GPBP1L1 (ENSCWAG00000011051)	TMEM69 (ENSCWAG00000011008)	IPP (ENSCWAG00000010964)	MAST2 (ENSCWAG00000010628) #35	PIK3R3 (ENSCWAG00000010438) #34	P3R3URF (ENSCWAG00000010396)	TSPAN1 (ENSCWAG00000010332) #33	POMGNT1 (ENSCWAG00000010307) #32	LURAP1 (ENSCWAG00000010268) #31	RAD54L (ENSCWAG00000010094) #28	LRRC41 (ENSCWAG00000010031) #27	ENSCWAG00000009971 #26	NSUN4 (ENSCWAG00000009918) #25	ENSCWAG00000009892	FAAH (ENSCWAG00000009787) #24	ENSCWAG00000009733 #22	DMBX1 (ENSCWAG00000009673) #19	KNCN (ENSCWAG00000009570)	MKNK1 (ENSCWAG00000009368)	MOB3C (ENSCWAG00000009326) #15	ATPAF1 (ENSCWAG00000009076) #14	TEX38 (ENSCWAG00000008969)	EFCAB14 (ENSCWAG00000008901) #12	CYP4B1 (ENSCWAG00000008498)	ENSCWAG00000008145	ENSCWAG00000007884	ENSCWAG00000007782	ENSCWAG00000007685	ENSCWAG00000007625	ENSCWAG00000007601 #8	TAL1 (ENSCWAG00000007586) #7
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00500000045816	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Carnivora	ANCESTRAL SPECIES	1	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00500000045816	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.m	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Caniformia	ANCESTRAL SPECIES	2	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.m	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Canidae	ANCESTRAL SPECIES	12	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318.i	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.m.f	ENSGT00940000155173.n	ENSGT00940000155173.m.e.a.a	ENSGT00940000155173.m.e.a.b	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318.i	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.m.f	ENSGT00940000155173.m.e.a.a	ENSGT00940000155173.m.e.a.b	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Dingo	MODERN SPECIES	344	GPBP1L1 (ENSCAFG00020016690)	ENSCAFG00020016687	IPP (ENSCAFG00020016683)	ENSCAFG00020016680	MAST2 (ENSCAFG00020015300) #35	PIK3R3 (ENSCAFG00020015140) #34	P3R3URF (ENSCAFG00020015132)	TSPAN1 (ENSCAFG00020015118) #33	POMGNT1 (ENSCAFG00020015108) #32	LURAP1 (ENSCAFG00020015104) #31	RAD54L (ENSCAFG00020015066) #28	LRRC41 (ENSCAFG00020015053) #27	ENSCAFG00020015051 #26	NSUN4 (ENSCAFG00020015046) #25	FAAH (ENSCAFG00020015043) #24	ENSCAFG00020015029 #22	DMBX1 (ENSCAFG00020015020) #19	ENSCAFG00020015017	KNCN (ENSCAFG00020015014)	MKNK1 (ENSCAFG00020014775)	MOB3C (ENSCAFG00020014764) #15	ATPAF1 (ENSCAFG00020014753) #14	TEX38 (ENSCAFG00020014751)	ENSCAFG00020014750 #12	ENSCAFG00020014748 #12	CYP4B1 (ENSCAFG00020014733)	ENSCAFG00020014728	ENSCAFG00020014722	ENSCAFG00020014560	ENSCAFG00020014556	CYP4X1 (ENSCAFG00020014528)
Dog	MODERN SPECIES	6	GPBP1L1 (ENSCAFG00845021504)	TMEM69 (ENSCAFG00845021465)	IPP (ENSCAFG00845021274)	LSM3 (ENSCAFG00845021214)	MAST2 (ENSCAFG00845020773) #35	PIK3R3 (ENSCAFG00845020552) #34	P3R3URF (ENSCAFG00845020496)	TSPAN1 (ENSCAFG00845020403) #33	POMGNT1 (ENSCAFG00845020251) #32	LURAP1 (ENSCAFG00845020213) #31	RAD54L (ENSCAFG00845020088) #28	LRRC41 (ENSCAFG00845019955) #27	UQCRH (ENSCAFG00845019885) #26	ENSCAFG00845019757	FAAH (ENSCAFG00845019651) #24	ENSCAFG00845019414 #22	DMBX1 (ENSCAFG00845019339) #19	KNCN (ENSCAFG00845019249)	MKNK1 (ENSCAFG00845018913)	MOB3C (ENSCAFG00845018787) #15	ATPAF1 (ENSCAFG00845018669) #14	ENSCAFG00845018605	EFCAB14 (ENSCAFG00845018333) #12	CYP4B1 (ENSCAFG00845018109)	CYP4A11 (ENSCAFG00845018002)	CYP4A38 (ENSCAFG00845017288)	ENSCAFG00845017005	CYP4X1 (ENSCAFG00845016805)	PDZK1IP1 (ENSCAFG00845016726) #8	TAL1 (ENSCAFG00845016668) #7	STIL (ENSCAFG00845016474)
Red fox	MODERN SPECIES	9	GPBP1L1 (ENSVVUG00000007354)	ENSVVUG00000007350	IPP (ENSVVUG00000007334)	ENSVVUG00000007332	MAST2 (ENSVVUG00000007302) #35	PIK3R3 (ENSVVUG00000007266) #34	P3R3URF (ENSVVUG00000007257)	TSPAN1 (ENSVVUG00000007241) #33	POMGNT1 (ENSVVUG00000007212) #32	LURAP1 (ENSVVUG00000007210) #31	RAD54L (ENSVVUG00000007201) #28	LRRC41 (ENSVVUG00000007175) #27	ENSVVUG00000007144 #26	NSUN4 (ENSVVUG00000007141) #25	FAAH (ENSVVUG00000007135) #24	ENSVVUG00000007109 #22	DMBX1 (ENSVVUG00000007090) #19	KNCN (ENSVVUG00000007079)	MKNK1 (ENSVVUG00000007048)	MOB3C (ENSVVUG00000007033) #15	ATPAF1 (ENSVVUG00000007030) #14	TEX38 (ENSVVUG00000007029)	EFCAB14 (ENSVVUG00000007017) #12	CYP4B1 (ENSVVUG00000007000)	ENSVVUG00000006767	ENSVVUG00000006748	ENSVVUG00000006722	ENSVVUG00000006690	CYP4X1 (ENSVVUG00000006664)	PDZK1IP1 (ENSVVUG00000006655) #8	ENSVVUG00000006648 #7
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.m	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Ursidae	ANCESTRAL SPECIES		ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851.l #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.m	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000161273
Ursus	ANCESTRAL SPECIES	19	ENSGT00390000016650	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851.l #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.m	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000157546.h	ENSGT00530000063821.b.a
American black bear	MODERN SPECIES	1956														NSUN4 (ENSUAMG00000003749) #25	FAAH (ENSUAMG00000003759) #24	ENSUAMG00000003770 #22	DMBX1 (ENSUAMG00000003778) #19	KNCN (ENSUAMG00000003790)	MKNK1 (ENSUAMG00000003802)	MOB3C (ENSUAMG00000003815) #15	ATPAF1 (ENSUAMG00000003823) #14
Polar bear	MODERN SPECIES	218	NASP (ENSUMAG00000024238)	GPBP1L1 (ENSUMAG00000024234)	TMEM69 (ENSUMAG00000024232)	IPP (ENSUMAG00000024231)	MAST2 (ENSUMAG00000023982) #35	PIK3R3 (ENSUMAG00000023883) #34	P3R3URF (ENSUMAG00000023879)	TSPAN1 (ENSUMAG00000023878) #33	POMGNT1 (ENSUMAG00000023624) #32	LURAP1 (ENSUMAG00000023608) #31	RAD54L (ENSUMAG00000023603) #28	LRRC41 (ENSUMAG00000023590) #27	ENSUMAG00000023582 #26	NSUN4 (ENSUMAG00000023579) #25	FAAH (ENSUMAG00000023571) #24	ENSUMAG00000023566 #22	DMBX1 (ENSUMAG00000023564) #19	KNCN (ENSUMAG00000023562)	MKNK1 (ENSUMAG00000023560)	MOB3C (ENSUMAG00000023559) #15	ATPAF1 (ENSUMAG00000023558) #14	TEX38 (ENSUMAG00000023557)	EFCAB14 (ENSUMAG00000023556) #12	CYP4B1 (ENSUMAG00000023554)	ENSUMAG00000023368	CYP4X1 (ENSUMAG00000023337)	PDZK1IP1 (ENSUMAG00000023333) #8	STIL (ENSUMAG00000023306)	CMPK1 (ENSUMAG00000023298)	ENSUMAG00000023291	SPATA6 (ENSUMAG00000023285)
Mustelinae	ANCESTRAL SPECIES		ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00500000045816	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173.m.c.a.a.a	ENSGT00940000155173.m.c.a.b	ENSGT00940000155173.m.c.b	ENSGT00940000155173.m.d	ENSGT00940000160927	ENSGT00940000154660.b #8
American mink	MODERN SPECIES	99	GPBP1L1 (ENSNVIG00000019202)	TMEM69 (ENSNVIG00000019216)	IPP (ENSNVIG00000019242)	MAST2 (ENSNVIG00000019315) #35	P55G (ENSNVIG00000019400) #34	P3R3URF (ENSNVIG00000019511)	TSPAN1 (ENSNVIG00000019521) #33	POMGNT1 (ENSNVIG00000019563) #32	LURAP1 (ENSNVIG00000019596) #31	RAD54L (ENSNVIG00000019605) #28	LRRC41 (ENSNVIG00000019625) #27	ENSNVIG00000019652 #26	NSUN4 (ENSNVIG00000019674) #25	ENSNVIG00000019682	FAAH (ENSNVIG00000019691) #24	ENSNVIG00000019711 #22	DMBX1 (ENSNVIG00000019739) #19	TMEM275 (ENSNVIG00000019754) #18	KNCN (ENSNVIG00000019761)	MKNK1 (ENSNVIG00000019797)	MOB3C (ENSNVIG00000019897) #15	ATPAF1 (ENSNVIG00000019919) #14	TEX38 (ENSNVIG00000019974)	EFCAB14 (ENSNVIG00000019987) #12	ENSNVIG00000020033	CYP4B1 (ENSNVIG00000020042)	ENSNVIG00000020093	ENSNVIG00000020121	ENSNVIG00000020193
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Equus	ANCESTRAL SPECIES	16	ENSGT00390000016228	ENSGT00730000111061.p	ENSGT00940000173599	ENSGT00390000013995.b.b	ENSGT00940000156242	ENSGT00950000183062.a.a.b	ENSGT00940000155915	ENSGT00720000108953	ENSGT00940000164528	ENSGT00940000158267	ENSGT00940000155870.b	ENSGT00950000182955.a.b.b.b	ENSGT00940000155323.a	ENSGT00940000159679	ENSGT00390000012906	ENSGT00940000163316 #22	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00390000012178.g.a.b	ENSGT00730000111305	ENSGT00940000162982	ENSGT01100000263511.b.a.b.a.b.c.a.b.a.a.a	ENSGT00940000153678.a.a	ENSGT00390000006485.c	ENSGT00940000153438.b	ENSGT00940000158848
Donkey	MODERN SPECIES	28	ENSEASG00005020915	ENSEASG00005024110	ENSEASG00005037127	ENSEASG00005012930	ENSEASG00005032122	ENSEASG00005034116	ENSEASG00005032393	ENSEASG00005034388	ENSEASG00005018042	ENSEASG00005031878	ENSEASG00005024276	ENSEASG00005031921	ENSEASG00005004472	CPNE8 (ENSEASG00005004527)	ENSEASG00005027444	ENSEASG00005031490 #22	SYT10 (ENSEASG00005004537)	PKP2 (ENSEASG00005004545)	YARS2 (ENSEASG00005004548)	DNM1L (ENSEASG00005004557)	ENSEASG00005004573	ENSEASG00005004580	ENSEASG00005004590	RESF1 (ENSEASG00005004595)	ENSEASG00005033475	AMN1 (ENSEASG00005027930)	ENSEASG00005031902	ENSEASG00005035391	ENSEASG00005004738	ENSEASG00005005984	ENSEASG00005005997
Horse	MODERN SPECIES	27	ZCRB1 (ENSECAG00000012174)	PPHLN1 (ENSECAG00000016067)	YAF2 (ENSECAG00000032360)	GXYLT1 (ENSECAG00000011563)	PDZRN4 (ENSECAG00000000627)	CNTN1 (ENSECAG00000011240)	ENSECAG00000006703	ENSECAG00000003485	LRRK2 (ENSECAG00000010288)	SLC2A13 (ENSECAG00000007459)	ENSECAG00000027797	ENSECAG00000029674	KIF21A (ENSECAG00000024186)	CPNE8 (ENSECAG00000014870)	ENSECAG00000013414	ENSECAG00000003178 #22	SYT10 (ENSECAG00000016752)	PKP2 (ENSECAG00000013566)	YARS2 (ENSECAG00000011140)	DNM1L (ENSECAG00000021929)	FGD4 (ENSECAG00000015379)	ENSECAG00000050788	ENSECAG00000050973	ENSECAG00000051470	RESF1 (ENSECAG00000010736)	ENSECAG00000050595	ETFBKMT (ENSECAG00000005690)	AMN1 (ENSECAG00000007078)	ENSECAG00000044287	ENSECAG00000059841	DENND5B (ENSECAG00000012573)
Chiroptera	ANCESTRAL SPECIES		ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163987
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00390000006459	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00700000106049	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00400000024146	ENSGT00940000162886	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161441.d	ENSGT00940000155173	ENSGT00940000160927	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163987
Microbat	MODERN SPECIES	974	GUCA2B (ENSMLUG00000005765)	HIVEP3 (ENSMLUG00000004675)	EDN2 (ENSMLUG00000004668)	SCMH1 (ENSMLUG00000007367)	SLFNL1 (ENSMLUG00000007340)	CTPS1 (ENSMLUG00000007301)	ENSMLUG00000028437	ENSMLUG00000005293	KCNQ4 (ENSMLUG00000007262)	NFYC (ENSMLUG00000007242)	RIMS3 (ENSMLUG00000007201)	EXO5 (ENSMLUG00000014184)	ZFP69 (ENSMLUG00000012551)	NSUN4 (ENSMLUG00000005448) #25	FAAH (ENSMLUG00000005452) #24	ENSMLUG00000023470 #22	DMBX1 (ENSMLUG00000005458) #19	KNCN (ENSMLUG00000028209)	MKNK1 (ENSMLUG00000007816)	MOB3C (ENSMLUG00000007841) #15	ATPAF1 (ENSMLUG00000007861) #14	TEX38 (ENSMLUG00000029002)	ENSMLUG00000014593 #12	CYP4B1 (ENSMLUG00000002776)	ENSMLUG00000024150	ENSMLUG00000025621	ENSMLUG00000002780	CYP4X1 (ENSMLUG00000011781)	PDZK1IP1 (ENSMLUG00000006083) #8	TAL1 (ENSMLUG00000006388) #7	STIL (ENSMLUG00000006395)
Sauria	DUPLICATION
Sauria	DUPLICATION
Sauria	ANCESTRAL SPECIES	7	ENSGT00390000016650	ENSGT00940000167241	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161441	ENSGT00940000161527.d.b.a #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161441	ENSGT00940000161527.d.b.a #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000012433.b	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161527.d.b.b #9	ENSGT00940000161527.d.b.a.c #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Laterata	ANCESTRAL SPECIES	3	ENSGT00390000012433.b	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161527.d.b.b #9	ENSGT00940000161527.d.b.a.c #9	ENSGT00940000161527.d.a.c #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
Common wall lizard	MODERN SPECIES	14	GPBP1L1 (ENSPMRG00000009638)	TMEM69 (ENSPMRG00000009634)	IPP (ENSPMRG00000009620)	ENSPMRG00000009610 #36	ENSPMRG00000009604	MAST2 (ENSPMRG00000008824) #35	PIK3R3 (ENSPMRG00000008673) #34	TSPAN1 (ENSPMRG00000008655) #33	POMGNT1 (ENSPMRG00000008531) #32	LURAP1 (ENSPMRG00000008487) #31	RAD54L (ENSPMRG00000008267) #28	LRRC41 (ENSPMRG00000008224) #27	ENSPMRG00000008218 #26	NSUN4 (ENSPMRG00000008211) #25	FAAH (ENSPMRG00000008196) #24	ENSPMRG00000008178 #22	ENSPMRG00000008164 #22	ENSPMRG00000008154 #22	DMBX1 (ENSPMRG00000008152) #19	ENSPMRG00000008146	ENSPMRG00000008131 #16	MOB3C (ENSPMRG00000008123) #15	ATPAF1 (ENSPMRG00000008083) #14	ENSPMRG00000008077	EFCAB14 (ENSPMRG00000008063) #12	ENSPMRG00000008050 #9	ENSPMRG00000007903 #9	ENSPMRG00000007882 #9	ENSPMRG00000007878	ENSPMRG00000007876	ENSPMRG00000007869 #9
Argentine black and white tegu	MODERN SPECIES	16	BEST4 (ENSSMRG00000018358)	RPS8 (ENSSMRG00000018357)	GPBP1L1 (ENSSMRG00000018356)	TMEM69 (ENSSMRG00000018355)	IPP (ENSSMRG00000018354)	ENSSMRG00000018353 #36	MAST2 (ENSSMRG00000018352) #35	PIK3R3 (ENSSMRG00000018350) #34	TSPAN1 (ENSSMRG00000018348) #33	POMGNT1 (ENSSMRG00000018347) #32	LURAP1 (ENSSMRG00000018346) #31	RAD54L (ENSSMRG00000018344) #28	LRRC41 (ENSSMRG00000018343) #27	ENSSMRG00000018342 #26	NSUN4 (ENSSMRG00000018341) #25	ENSSMRG00000018340 #22	ENSSMRG00000018339 #22	DMBX1 (ENSSMRG00000018338) #19	TMEM275 (ENSSMRG00000018337) #18	ENSSMRG00000018336 #16	MOB3C (ENSSMRG00000018334) #15	ATPAF1 (ENSSMRG00000018333) #14	EFCAB14 (ENSSMRG00000018332) #12	ENSSMRG00000018331 #9	ENSSMRG00000018315 #9	ENSSMRG00000018313 #9	PDZK1IP1 (ENSSMRG00000018312) #8	TAL1 (ENSSMRG00000018311) #7	STIL (ENSSMRG00000018309)	ENSSMRG00000018308	ENSSMRG00000018307
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00390000012433.b	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161527.d.b.a.d #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Elapidae	ANCESTRAL SPECIES	1	ENSGT00390000012433.b	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c.b #9	ENSGT00940000161527.d.a #9	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540
Indian cobra	MODERN SPECIES	2	ENSNNAG00000005212	GPBP1L1 (ENSNNAG00000005252)	TMEM69 (ENSNNAG00000005287)	IPP (ENSNNAG00000005300)	ENSNNAG00000005323 #36	MAST2 (ENSNNAG00000005562) #35	PIK3R3 (ENSNNAG00000008262) #34	TSPAN1 (ENSNNAG00000008310) #33	POMGNT1 (ENSNNAG00000008355) #32	LURAP1 (ENSNNAG00000008492) #31	RAD54L (ENSNNAG00000008522) #28	LRRC41 (ENSNNAG00000008886) #27	ENSNNAG00000008904 #26	NSUN4 (ENSNNAG00000008917) #25	FAAH (ENSNNAG00000008955) #24	ENSNNAG00000009411 #22	ENSNNAG00000009445 #22	ENSNNAG00000009543 #22	DMBX1 (ENSNNAG00000009640) #19	ENSNNAG00000009684 #16	MOB3C (ENSNNAG00000009741) #15	ATPAF1 (ENSNNAG00000009764) #14	ENSNNAG00000009790	EFCAB14 (ENSNNAG00000009832) #12	ENSNNAG00000009903 #9	ENSNNAG00000009996 #9	TAL1 (ENSNNAG00000010424) #7	STIL (ENSNNAG00000010456)	CMPK1 (ENSNNAG00000010501)	ENSNNAG00000010525	FOXD2 (ENSNNAG00000010546)
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00390000012433.b	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c.b #9	ENSGT00940000161527.d.a #9	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540
Blue-lipped sea krait	MODERN SPECIES	2489																ENSLLTG00000008476 #22	ENSLLTG00000008317 #22
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00390000012433.b	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c.b #9	ENSGT00940000161527.d.a #9	ENSGT00980000201417	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Eastern brown snake	MODERN SPECIES	34	RPS8 (ENSPTXG00000001654)	ENSPTXG00000001659	TMEM69 (ENSPTXG00000001660)	IPP (ENSPTXG00000001661)	ENSPTXG00000001662 #36	MAST2 (ENSPTXG00000001758) #35	PIK3R3 (ENSPTXG00000007104) #34	TSPAN1 (ENSPTXG00000007105) #33	POMGNT1 (ENSPTXG00000007106) #32	LURAP1 (ENSPTXG00000007107) #31	RAD54L (ENSPTXG00000007109) #28	LRRC41 (ENSPTXG00000007114) #27	ENSPTXG00000007120 #26	NSUN4 (ENSPTXG00000007122) #25	FAAH (ENSPTXG00000007124) #24	ENSPTXG00000007125 #22	ENSPTXG00000001479 #22	ENSPTXG00000001485 #22	DMBX1 (ENSPTXG00000001497) #19	ENSPTXG00000001502 #16	MOB3C (ENSPTXG00000001507) #15	ATPAF1 (ENSPTXG00000001511) #14	ENSPTXG00000001516	EFCAB14 (ENSPTXG00000001523) #12	ENSPTXG00000001527 #9	ENSPTXG00000001532 #9	ENSPTXG00000001545	ENSPTXG00000001547 #7	STIL (ENSPTXG00000001553)	ENSPTXG00000001577	ENSPTXG00000001580
Mainland tiger snake	MODERN SPECIES	13	RPS8 (ENSNSUG00000015807)	GPBP1L1 (ENSNSUG00000015810)	TMEM69 (ENSNSUG00000015811)	IPP (ENSNSUG00000015812)	ENSNSUG00000015813 #36	MAST2 (ENSNSUG00000015815) #35	PIK3R3 (ENSNSUG00000016086) #34	TSPAN1 (ENSNSUG00000016088) #33	POMGNT1 (ENSNSUG00000016096) #32	LURAP1 (ENSNSUG00000016145) #31	RAD54L (ENSNSUG00000016147) #28	LRRC41 (ENSNSUG00000016149) #27	ENSNSUG00000016158 #26	NSUN4 (ENSNSUG00000016159) #25	FAAH (ENSNSUG00000016160) #24	ENSNSUG00000016161 #22	ENSNSUG00000016162 #22	ENSNSUG00000016163 #22	DMBX1 (ENSNSUG00000016164) #19	TMEM275 (ENSNSUG00000016165) #18	ENSNSUG00000016166 #16	ENSNSUG00000016167 #16	MOB3C (ENSNSUG00000016168) #15	ATPAF1 (ENSNSUG00000016169) #14	ENSNSUG00000016170	EFCAB14 (ENSNSUG00000016171) #12	ENSNSUG00000016172 #9	ENSNSUG00000016173 #9	ENSNSUG00000016174	TAL1 (ENSNSUG00000016175) #7	STIL (ENSNSUG00000016176)
Lizard	MODERN SPECIES	3	ENSACAG00000015757 #36	MAST2 (ENSACAG00000015765) #35	ENSACAG00000040097	ENSACAG00000038001	PIK3R3 (ENSACAG00000015856) #34	ENSACAG00000028366	TSPAN1 (ENSACAG00000029493) #33	POMGNT1 (ENSACAG00000002424) #32	ENSACAG00000002593	LURAP1 (ENSACAG00000002422) #31	RAD54L (ENSACAG00000002312) #28	LRRC41 (ENSACAG00000002210) #27	ENSACAG00000002194 #26	NSUN4 (ENSACAG00000043184) #25	FAAH (ENSACAG00000002040) #24	ENSACAG00000001984 #22	ENSACAG00000028412 #22	ENSACAG00000029353 #22	ENSACAG00000001951 #19	ENSACAG00000001932	ENSACAG00000001870 #16	ENSACAG00000034956	ENSACAG00000001833 #15	ENSACAG00000034569	ENSACAG00000041940	ENSACAG00000035349	ENSACAG00000043345	ENSACAG00000037944	ELAVL4 (ENSACAG00000004527)	ENSACAG00000042237	DMRTA2 (ENSACAG00000007289)
tuatara	MODERN SPECIES	1725				IPP (ENSSPUG00000007872)	ENSSPUG00000007957 #36	MAST2 (ENSSPUG00000008056) #35	PIK3R3 (ENSSPUG00000008274) #34	TSPAN1 (ENSSPUG00000008283) #33	POMGNT1 (ENSSPUG00000008304) #32	LURAP1 (ENSSPUG00000008406) #31	RAD54L (ENSSPUG00000008501) #28	LRRC41 (ENSSPUG00000008537) #27	ENSSPUG00000008549	NSUN4 (ENSSPUG00000008598) #25	FAAH (ENSSPUG00000008773) #24	ENSSPUG00000008796 #22	ENSSPUG00000008848 #22	ENSSPUG00000008867 #22	DMBX1 (ENSSPUG00000008894) #19	ENSSPUG00000008905 #16	MOB3C (ENSSPUG00000008916) #15	ATPAF1 (ENSSPUG00000009006) #14	EFCAB14 (ENSSPUG00000009350) #12	CYP4B1 (ENSSPUG00000009405) #9	CYP4B35 (ENSSPUG00000009557)	CYP4B36 (ENSSPUG00000009899) #9	CYP4B37 (ENSSPUG00000010107) #9	CYP4B38 (ENSSPUG00000010929) #9	TAL1 (ENSSPUG00000011173) #7	STIL (ENSSPUG00000011248)	ENSSPUG00000011504
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000016446	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000163316.b #22	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00940000167241	ENSGT00390000016650	ENSGT00940000156539
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.d.b.b #9	ENSGT00940000161527.c.f #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000016446	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000163316.b #22	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.d.b.a #9	ENSGT00940000161441	ENSGT00940000161527.c.f #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000016446	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000163316.b #22	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35
Testudinidae	ANCESTRAL SPECIES	33	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.d.b.a #9	ENSGT00940000161441	ENSGT00940000161527.c.f #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000016446	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000163316.b #22	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00950000185760	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00940000157700	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b
Goode s thornscrub tortoise	MODERN SPECIES	22	STIL (ENSGEVG00005018571)	TAL1 (ENSGEVG00005018730) #7	PDZK1IP1 (ENSGEVG00005018742) #8	ENSGEVG00005018800 #9	ENSGEVG00005019175 #9	ENSGEVG00005019318 #9	ENSGEVG00005019451 #9	EFCAB14 (ENSGEVG00005019524) #12	TEX38 (ENSGEVG00005019533)	ATPAF1 (ENSGEVG00005019541) #14	MOB3C (ENSGEVG00005019561) #15	ENSGEVG00005019576 #16	DMBX1 (ENSGEVG00005019588) #19	ENSGEVG00005019602 #22	FAAH (ENSGEVG00005019620) #24	ENSGEVG00005019637 #22	NSUN4 (ENSGEVG00005019648) #25	ENSGEVG00005019659 #26	LRRC41 (ENSGEVG00005019676) #27	RAD54L (ENSGEVG00005019699) #28	LURAP1 (ENSGEVG00005019716) #31	POMGNT1 (ENSGEVG00005019721) #32	TSPAN1 (ENSGEVG00005019729) #33	ENSGEVG00005019734	PIK3R3 (ENSGEVG00005019739) #34	MAST2 (ENSGEVG00005020025) #35	ENSGEVG00005020502 #36	IPP (ENSGEVG00005020503)	TMEM69 (ENSGEVG00005020507)	GPBP1L1 (ENSGEVG00005020508)	ENSGEVG00005020516
Abingdon island giant tortoise	MODERN SPECIES	2304	PDZK1IP1 (ENSCABG00000010251) #8	ENSCABG00000010253 #9	ENSCABG00000010355 #9	CYP4B1 (ENSCABG00000010391)	ENSCABG00000010415 #9	ENSCABG00000010908 #9	EFCAB14 (ENSCABG00000011128) #12	TEX38 (ENSCABG00000011132)	ATPAF1 (ENSCABG00000011133) #14	MOB3C (ENSCABG00000011134) #15	ENSCABG00000011135 #16	TMEM275 (ENSCABG00000011136) #18	DMBX1 (ENSCABG00000011137) #19	ENSCABG00000011138 #22	ENSCABG00000011142 #24	ENSCABG00000011145 #22	NSUN4 (ENSCABG00000011147) #25	ENSCABG00000011149 #26	LRRC41 (ENSCABG00000011153) #27	RAD54L (ENSCABG00000011204) #28	LURAP1 (ENSCABG00000011246) #31	POMGNT1 (ENSCABG00000011271) #32	TSPAN1 (ENSCABG00000011827) #33	ENSCABG00000011829	PIK3R3 (ENSCABG00000011830) #34	MAST2 (ENSCABG00000011920) #35
Emydidae	ANCESTRAL SPECIES	22	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000157700	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161527.c.e #9	ENSGT00940000161527.c.f #9	ENSGT00940000161441	ENSGT00940000161527.d.b.a #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7
painted turtle	MODERN SPECIES	1031					ENSCPBG00000018637	ENSCPBG00000018643	ENSCPBG00000018646	ENSCPBG00000018650	ENSCPBG00000018653	ENSCPBG00000018657	ENSCPBG00000018661	ENSCPBG00000018662	ENSCPBG00000018664	THAP7 (ENSCPBG00000018688)	ENSCPBG00000018704 #24	ENSCPBG00000018712 #22	ENSCPBG00000018720 #22	NSUN4 (ENSCPBG00000018725) #25	ENSCPBG00000018727 #26
Archosauria	ANCESTRAL SPECIES	11	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Aves	ANCESTRAL SPECIES	7	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
African ostrich	MODERN SPECIES	578	SLC5A9 (ENSSCUG00000012331)	TRABD2B (ENSSCUG00000012332)	ENSSCUG00000012336	STIL (ENSSCUG00000012337)	TAL1 (ENSSCUG00000012338) #7	PDZK1IP1 (ENSSCUG00000012339) #8	ENSSCUG00000012340 #9	ENSSCUG00000012342 #9	EFCAB14 (ENSSCUG00000012343) #12	ATPAF1 (ENSSCUG00000012344) #14	MOB3C (ENSSCUG00000012345) #15	ENSSCUG00000012346 #16	DMBX1 (ENSSCUG00000012347) #19	ENSSCUG00000012348 #22	FAAH (ENSSCUG00000012349) #24	ENSSCUG00000012351 #22	ENSSCUG00000012354 #22	NSUN4 (ENSSCUG00000012356) #25	ENSSCUG00000012357	ENSSCUG00000012358 #26	LRRC41 (ENSSCUG00000012360) #27	RAD54L (ENSSCUG00000012362) #28	ENSSCUG00000012368 #32	TSPAN1 (ENSSCUG00000012372) #33
Neognathae	ANCESTRAL SPECIES	8	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Great tit	MODERN SPECIES	28	FOXD2 (ENSPMJG00000000414)	FOXE1 (ENSPMJG00000000299)	ENSPMJG00000000275	STIL (ENSPMJG00000000254)	TAL1 (ENSPMJG00000000238) #7	PDZK1IP1 (ENSPMJG00000000226) #8	ENSPMJG00000000216 #9	ENSPMJG00000000189 #9	EFCAB14 (ENSPMJG00000000135) #12	ATPAF1 (ENSPMJG00000000092) #14	MOB3C (ENSPMJG00000000048) #15	ENSPMJG00000019632 #16	TMEM275 (ENSPMJG00000019631) #18	DMBX1 (ENSPMJG00000019630) #19	FAAH (ENSPMJG00000019628) #24	ENSPMJG00000019627 #22	ENSPMJG00000019624 #22	NSUN4 (ENSPMJG00000019620) #25	ENSPMJG00000019616 #26	LRRC41 (ENSPMJG00000019615) #27	RAD54L (ENSPMJG00000019613) #28	LURAP1 (ENSPMJG00000019612) #31	POMGNT1 (ENSPMJG00000019610) #32	TSPAN1 (ENSPMJG00000019609) #33	PIK3R3 (ENSPMJG00000019608) #34	MAST2 (ENSPMJG00000019600) #35	ENSPMJG00000019595 #36	IPP (ENSPMJG00000019594)	TMEM69 (ENSPMJG00000019593)	GPBP1L1 (ENSPMJG00000019592)	ENSPMJG00000019591
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Zebra finch	MODERN SPECIES	30	ENSTGUG00000023854	ENSTGUG00000008563	STIL (ENSTGUG00000008545)	TAL1 (ENSTGUG00000008542) #7	PDZK1IP1 (ENSTGUG00000008532) #8	ENSTGUG00000008524 #9	ENSTGUG00000008418 #9	EFCAB14 (ENSTGUG00000008408) #12	ENSTGUG00000019172	ATPAF1 (ENSTGUG00000008394) #14	MOB3C (ENSTGUG00000008386) #15	ENSTGUG00000008358 #16	TMEM275 (ENSTGUG00000027598) #18	DMBX1 (ENSTGUG00000008353) #19	FAAH (ENSTGUG00000008323) #24	ENSTGUG00000017201 #22	ENSTGUG00000008319 #22	NSUN4 (ENSTGUG00000021857) #25	UQCRH (ENSTGUG00000008278) #26	LRRC41 (ENSTGUG00000008262) #27	RAD54L (ENSTGUG00000008233) #28	LURAP1 (ENSTGUG00000020108) #31	POMGNT1 (ENSTGUG00000008179) #32	TSPAN1 (ENSTGUG00000008165) #33	PIK3R3 (ENSTGUG00000008122) #34	MAST2 (ENSTGUG00000008089) #35	ENSTGUG00000020094 #36	IPP (ENSTGUG00000008061)	TMEM69 (ENSTGUG00000008059)	GPBP1L1 (ENSTGUG00000008044)	NASP (ENSTGUG00000008032)
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Kakapo	MODERN SPECIES	25	ENSSHBG00005007192	ENSSHBG00005007170	STIL (ENSSHBG00005007114)	TAL1 (ENSSHBG00005007088) #7	PDZK1IP1 (ENSSHBG00005007075) #8	ENSSHBG00005006437 #9	ENSSHBG00005006306 #9	EFCAB14 (ENSSHBG00005006278) #12	ATPAF1 (ENSSHBG00005006246) #14	MOB3C (ENSSHBG00005006236) #15	ENSSHBG00005006223	ENSSHBG00005006177 #16	TMEM275 (ENSSHBG00005006147) #18	DMBX1 (ENSSHBG00005006125) #19	FAAH (ENSSHBG00005006094) #24	ENSSHBG00005006062 #22	ENSSHBG00005006024 #22	NSUN4 (ENSSHBG00005006011) #25	ENSSHBG00005006002 #26	LRRC41 (ENSSHBG00005005972) #27	RAD54L (ENSSHBG00005005827) #28	LURAP1 (ENSSHBG00005005795) #31	POMGNT1 (ENSSHBG00005005775) #32	TSPAN1 (ENSSHBG00005005758) #33	PIK3R3 (ENSSHBG00005005718) #34	MAST2 (ENSSHBG00005005596) #35	ENSSHBG00005005524 #36	IPP (ENSSHBG00005005497)	TMEM69 (ENSSHBG00005005478)	GPBP1L1 (ENSSHBG00005005468)	NASP (ENSSHBG00005005428)
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000161237 #24	ENSGT00940000155505.a #19	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b.`b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00940000161237 #24	ENSGT00940000155505.a #19	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b.`b.a #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Turkey	MODERN SPECIES	1	IPP (ENSMGAG00000010501)	TMEM69 (ENSMGAG00000010500)	ENSMGAG00000020097 #35	GPBP1L1 (ENSMGAG00000019238)	ENSMGAG00000010530 #35	PIK3R3 (ENSMGAG00000010604) #34	ENSMGAG00000010574 #32	ENSMGAG00000010616 #33	LURAP1 (ENSMGAG00000010613) #31	ENSMGAG00000010634 #28	ENSMGAG00000020766 #28	NSUN4 (ENSMGAG00000010675) #25	ENSMGAG00000010666 #26	LRRC41 (ENSMGAG00000010654) #27	ENSMGAG00000010684 #24	ENSMGAG00000010681 #22	ENSMGAG00000010718 #19	ENSMGAG00000010722 #16	ENSMGAG00000010730 #15	ENSMGAG00000010732 #14	ENSMGAG00000010747 #12	ENSMGAG00000010784 #9	ENSMGAG00000010752 #9	ENSMGAG00000010823 #7	ENSMGAG00000010795	ENSMGAG00000010814	ENSMGAG00000010792	TRABD2B (ENSMGAG00000017913)	ENSMGAG00000021374	ENSMGAG00000010829	ENSMGAG00000010855
Chicken	MODERN SPECIES	37	ENSGALG00010024768	SPATA6 (ENSGALG00010024758)	SLC5A9 (ENSGALG00010024728)	TRABD2B (ENSGALG00010024695)	ENSGALG00010026936	CMPK1 (ENSGALG00010024686)	STIL (ENSGALG00010024669)	TAL1 (ENSGALG00010022991) #7	PDZK1IP1 (ENSGALG00010022948) #8	CYP4B7 (ENSGALG00010022917) #9	EFCAB14 (ENSGALG00010022874) #12	ATPAF1 (ENSGALG00010022867) #14	MOB3C (ENSGALG00010022860) #15	MKNK1 (ENSGALG00010023356) #16	DMBX1 (ENSGALG00010022675) #19	VDHAP (ENSGALG00010027076) #22	ENSGALG00010022999 #22	NSUN4 (ENSGALG00010023124) #25	UQCRHL (ENSGALG00010023114) #26	LRRC41 (ENSGALG00010023090) #27	RAD54L (ENSGALG00010023052) #28	LURAP1 (ENSGALG00010023097) #31	POMGNT1 (ENSGALG00010023073) #32	TSPAN1 (ENSGALG00010023330) #33	PIK3R3 (ENSGALG00010023309) #34	ENSGALG00010026498 #35	RBP (ENSGALG00010026367) #36	IPP (ENSGALG00010026335)	TMEM69 (ENSGALG00010026325)	GPBP1L1 (ENSGALG00010026321)	NASP (ENSGALG00010026287)
Japanese quail	MODERN SPECIES	26	TRABD2B (ENSCJPG00005010082)	FOXD2 (ENSCJPG00005010080)	ENSCJPG00005010079	ENSCJPG00005010078	STIL (ENSCJPG00005010077)	TAL1 (ENSCJPG00005010076) #7	ENSCJPG00005010075 #9	ENSCJPG00005010074 #9	EFCAB14 (ENSCJPG00005010073) #12	ATPAF1 (ENSCJPG00005010072) #14	MOB3C (ENSCJPG00005010071) #15	ENSCJPG00005010070 #16	TMEM275 (ENSCJPG00005010069) #18	DMBX1 (ENSCJPG00005010066) #19	FAAH (ENSCJPG00005010065) #24	ENSCJPG00005010064 #22	ENSCJPG00005010063 #22	NSUN4 (ENSCJPG00005010062) #25	LRRC41 (ENSCJPG00005010061) #27	RAD54L (ENSCJPG00005010060) #28	LURAP1 (ENSCJPG00005010059) #31	POMGNT1 (ENSCJPG00005010058) #32	TSPAN1 (ENSCJPG00005010057) #33	PIK3R3 (ENSCJPG00005010056) #34	MAST2 (ENSCJPG00005010055) #35	ENSCJPG00005010054 #36	IPP (ENSCJPG00005010026)	TMEM69 (ENSCJPG00005010025)	GPBP1L1 (ENSCJPG00005009998)	NASP (ENSCJPG00005009996)	AKR1A1 (ENSCJPG00005009995)
Anatidae	ANCESTRAL SPECIES	5	ENSGT00940000161273	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650
Pink-footed goose	MODERN SPECIES	1	TRABD2B (ENSABRG00000016692)	ENSABRG00000016705	ENSABRG00000016710	STIL (ENSABRG00000016714)	TAL1 (ENSABRG00000016716) #7	PDZK1IP1 (ENSABRG00000016718) #8	ENSABRG00000016720 #9	ENSABRG00000016721 #9	EFCAB14 (ENSABRG00000016757) #12	ATPAF1 (ENSABRG00000016766) #14	MOB3C (ENSABRG00000016771) #15	ENSABRG00000016779 #16	TMEM275 (ENSABRG00000016800) #18	DMBX1 (ENSABRG00000016803) #19	ENSABRG00000016807	ENSABRG00000016808 #22	ENSABRG00000016829 #22	NSUN4 (ENSABRG00000016836) #25	ENSABRG00000016838 #26	LRRC41 (ENSABRG00000016846) #27	RAD54L (ENSABRG00000016858) #28	LURAP1 (ENSABRG00000016908) #31	POMGNT1 (ENSABRG00000016911) #32	TSPAN1 (ENSABRG00000016928) #33	ENSABRG00000016940 ##34	PIK3R3 (ENSABRG00000016952) #34	MAST2 (ENSABRG00000016971) #35	ENSABRG00000017000 #36	IPP (ENSABRG00000017006)	TMEM69 (ENSABRG00000017007)	GPBP1L1 (ENSABRG00000017008)
Duck	MODERN SPECIES	26	ENSAPLG00000020726	SLC5A9 (ENSAPLG00000007144)	ENSAPLG00000022301 ##29	TRABD2B (ENSAPLG00000007124)	ENSAPLG00000028912	ENSAPLG00000029939	STIL (ENSAPLG00000010138)	ENSAPLG00000009571 #9	EFCAB14 (ENSAPLG00000026113) #12	ATPAF1 (ENSAPLG00000009308) #14	MOB3C (ENSAPLG00000009181) #15	ENSAPLG00000008479 #16	TMEM275 (ENSAPLG00000018210) #18	DMBX1 (ENSAPLG00000008404) #19	FAAH (ENSAPLG00000007898) #24	ENSAPLG00000007474 #22	ENSAPLG00000007374 #22	NSUN4 (ENSAPLG00000007241) #25	ENSAPLG00000007037 #26	LRRC41 (ENSAPLG00000006638) #27	RAD54L (ENSAPLG00000006389) #28	LURAP1 (ENSAPLG00000030348) #31	POMGNT1 (ENSAPLG00000007878) #32	TSPAN1 (ENSAPLG00000007619) #33	PIK3R3 (ENSAPLG00000006823) #34	MAST2 (ENSAPLG00000006200) #35	ENSAPLG00000006104 #36	IPP (ENSAPLG00000005658)	TMEM69 (ENSAPLG00000005652)	GPBP1L1 (ENSAPLG00000005350)	NASP (ENSAPLG00000004941)
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	28	ENSCPRG00005018033	STIL (ENSCPRG00005018027)	TAL1 (ENSCPRG00005018024) #7	ENSCPRG00005018022	ENSCPRG00005017986 #9	ENSCPRG00005017973 #9	EFCAB14 (ENSCPRG00005017964) #12	ENSCPRG00005017961	ATPAF1 (ENSCPRG00005017958) #14	MOB3C (ENSCPRG00005017953) #15	ENSCPRG00005017951 #16	TMEM275 (ENSCPRG00005017950) #18	DMBX1 (ENSCPRG00005017947) #19	RAD54L (ENSCPRG00005017943) #28	ENSCPRG00005017941 #22	ENSCPRG00005017938 #22	ENSCPRG00005017934 #22	NSUN4 (ENSCPRG00005017933) #25	ENSCPRG00005017930 #26	LRRC41 (ENSCPRG00005017926) #27	LURAP1 (ENSCPRG00005017917) #31	POMGNT1 (ENSCPRG00005017911) #32	TSPAN1 (ENSCPRG00005017902) #33	PIK3R3 (ENSCPRG00005017894) #34	ENSCPRG00005017887	MAST2 (ENSCPRG00005017882) #35	ENSCPRG00005017875 #36	IPP (ENSCPRG00005017866)	GPBP1L1 (ENSCPRG00005017857)	NASP (ENSCPRG00005017842)	AKR1A1 (ENSCPRG00005017833)
Australian saltwater crocodile	MODERN SPECIES	28	TRABD2B (ENSCPRG00005018038)	ENSCPRG00005018033	STIL (ENSCPRG00005018027)	TAL1 (ENSCPRG00005018024) #7	ENSCPRG00005018022	ENSCPRG00005017986 #9	ENSCPRG00005017973 #9	EFCAB14 (ENSCPRG00005017964) #12	ENSCPRG00005017961	ATPAF1 (ENSCPRG00005017958) #14	MOB3C (ENSCPRG00005017953) #15	ENSCPRG00005017951 #16	TMEM275 (ENSCPRG00005017950) #18	DMBX1 (ENSCPRG00005017947) #19	RAD54L (ENSCPRG00005017943) #28	ENSCPRG00005017941 #22	ENSCPRG00005017938 #22	ENSCPRG00005017934 #22	NSUN4 (ENSCPRG00005017933) #25	ENSCPRG00005017930 #26	LRRC41 (ENSCPRG00005017926) #27	LURAP1 (ENSCPRG00005017917) #31	POMGNT1 (ENSCPRG00005017911) #32	TSPAN1 (ENSCPRG00005017902) #33	PIK3R3 (ENSCPRG00005017894) #34	ENSCPRG00005017887	MAST2 (ENSCPRG00005017882) #35	ENSCPRG00005017875 #36	IPP (ENSCPRG00005017866)	GPBP1L1 (ENSCPRG00005017857)	NASP (ENSCPRG00005017842)
Sauria	ANCESTRAL SPECIES																	ENSGT00940000163316.a.b #22
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161441	ENSGT00940000161527.d.b.a #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Episquamata	ANCESTRAL SPECIES	1	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161527.d.b.b #9	ENSGT00940000161527.d.b.a.c #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161527.d.b.a.d #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Elapidae	ANCESTRAL SPECIES	1	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c.b #9	ENSGT00940000161527.d.a #9	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540	ENSGT00940000162270.a
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c.b #9	ENSGT00940000161527.d.a #9	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540	ENSGT00940000162270.a
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c.b #9	ENSGT00940000161527.d.a #9	ENSGT00980000201417	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540
Mainland tiger snake	MODERN SPECIES	13	GPBP1L1 (ENSNSUG00000015810)	TMEM69 (ENSNSUG00000015811)	IPP (ENSNSUG00000015812)	ENSNSUG00000015813 #36	MAST2 (ENSNSUG00000015815) #35	PIK3R3 (ENSNSUG00000016086) #34	TSPAN1 (ENSNSUG00000016088) #33	POMGNT1 (ENSNSUG00000016096) #32	LURAP1 (ENSNSUG00000016145) #31	RAD54L (ENSNSUG00000016147) #28	LRRC41 (ENSNSUG00000016149) #27	ENSNSUG00000016158 #26	NSUN4 (ENSNSUG00000016159) #25	FAAH (ENSNSUG00000016160) #24	ENSNSUG00000016161 #22	ENSNSUG00000016162 #22	ENSNSUG00000016163 #22	DMBX1 (ENSNSUG00000016164) #19	TMEM275 (ENSNSUG00000016165) #18	ENSNSUG00000016166 #16	ENSNSUG00000016167 #16	MOB3C (ENSNSUG00000016168) #15	ATPAF1 (ENSNSUG00000016169) #14	ENSNSUG00000016170	EFCAB14 (ENSNSUG00000016171) #12	ENSNSUG00000016172 #9	ENSNSUG00000016173 #9	ENSNSUG00000016174	TAL1 (ENSNSUG00000016175) #7	STIL (ENSNSUG00000016176)	CMPK1 (ENSNSUG00000016179)
Eastern brown snake	MODERN SPECIES	34	ENSPTXG00000001659	TMEM69 (ENSPTXG00000001660)	IPP (ENSPTXG00000001661)	ENSPTXG00000001662 #36	MAST2 (ENSPTXG00000001758) #35	PIK3R3 (ENSPTXG00000007104) #34	TSPAN1 (ENSPTXG00000007105) #33	POMGNT1 (ENSPTXG00000007106) #32	LURAP1 (ENSPTXG00000007107) #31	RAD54L (ENSPTXG00000007109) #28	LRRC41 (ENSPTXG00000007114) #27	ENSPTXG00000007120 #26	NSUN4 (ENSPTXG00000007122) #25	FAAH (ENSPTXG00000007124) #24	ENSPTXG00000007125 #22	ENSPTXG00000001479 #22	ENSPTXG00000001485 #22	DMBX1 (ENSPTXG00000001497) #19	ENSPTXG00000001502 #16	MOB3C (ENSPTXG00000001507) #15	ATPAF1 (ENSPTXG00000001511) #14	ENSPTXG00000001516	EFCAB14 (ENSPTXG00000001523) #12	ENSPTXG00000001527 #9	ENSPTXG00000001532 #9	ENSPTXG00000001545	ENSPTXG00000001547 #7	STIL (ENSPTXG00000001553)	ENSPTXG00000001577	ENSPTXG00000001580	FOXD2 (ENSPTXG00000001582)
Blue-lipped sea krait	MODERN SPECIES	2489															ENSLLTG00000008476 #22	ENSLLTG00000008317 #22
Indian cobra	MODERN SPECIES	2	GPBP1L1 (ENSNNAG00000005252)	TMEM69 (ENSNNAG00000005287)	IPP (ENSNNAG00000005300)	ENSNNAG00000005323 #36	MAST2 (ENSNNAG00000005562) #35	PIK3R3 (ENSNNAG00000008262) #34	TSPAN1 (ENSNNAG00000008310) #33	POMGNT1 (ENSNNAG00000008355) #32	LURAP1 (ENSNNAG00000008492) #31	RAD54L (ENSNNAG00000008522) #28	LRRC41 (ENSNNAG00000008886) #27	ENSNNAG00000008904 #26	NSUN4 (ENSNNAG00000008917) #25	FAAH (ENSNNAG00000008955) #24	ENSNNAG00000009411 #22	ENSNNAG00000009445 #22	ENSNNAG00000009543 #22	DMBX1 (ENSNNAG00000009640) #19	ENSNNAG00000009684 #16	MOB3C (ENSNNAG00000009741) #15	ATPAF1 (ENSNNAG00000009764) #14	ENSNNAG00000009790	EFCAB14 (ENSNNAG00000009832) #12	ENSNNAG00000009903 #9	ENSNNAG00000009996 #9	TAL1 (ENSNNAG00000010424) #7	STIL (ENSNNAG00000010456)	CMPK1 (ENSNNAG00000010501)	ENSNNAG00000010525	FOXD2 (ENSNNAG00000010546)	TRABD2B (ENSNNAG00000010576)
Lizard	MODERN SPECIES	3	MAST2 (ENSACAG00000015765) #35	ENSACAG00000040097	ENSACAG00000038001	PIK3R3 (ENSACAG00000015856) #34	ENSACAG00000028366	TSPAN1 (ENSACAG00000029493) #33	POMGNT1 (ENSACAG00000002424) #32	ENSACAG00000002593	LURAP1 (ENSACAG00000002422) #31	RAD54L (ENSACAG00000002312) #28	LRRC41 (ENSACAG00000002210) #27	ENSACAG00000002194 #26	NSUN4 (ENSACAG00000043184) #25	FAAH (ENSACAG00000002040) #24	ENSACAG00000001984 #22	ENSACAG00000028412 #22	ENSACAG00000029353 #22	ENSACAG00000001951 #19	ENSACAG00000001932	ENSACAG00000001870 #16	ENSACAG00000034956	ENSACAG00000001833 #15	ENSACAG00000034569	ENSACAG00000041940	ENSACAG00000035349	ENSACAG00000043345	ENSACAG00000037944	ELAVL4 (ENSACAG00000004527)	ENSACAG00000042237	DMRTA2 (ENSACAG00000007289)	FAF1 (ENSACAG00000007308)
Laterata	ANCESTRAL SPECIES	3	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161527.d.b.b #9	ENSGT00940000161527.d.b.a.c #9	ENSGT00940000161527.d.a.c #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Common wall lizard	MODERN SPECIES	14	TMEM69 (ENSPMRG00000009634)	IPP (ENSPMRG00000009620)	ENSPMRG00000009610 #36	ENSPMRG00000009604	MAST2 (ENSPMRG00000008824) #35	PIK3R3 (ENSPMRG00000008673) #34	TSPAN1 (ENSPMRG00000008655) #33	POMGNT1 (ENSPMRG00000008531) #32	LURAP1 (ENSPMRG00000008487) #31	RAD54L (ENSPMRG00000008267) #28	LRRC41 (ENSPMRG00000008224) #27	ENSPMRG00000008218 #26	NSUN4 (ENSPMRG00000008211) #25	FAAH (ENSPMRG00000008196) #24	ENSPMRG00000008178 #22	ENSPMRG00000008164 #22	ENSPMRG00000008154 #22	DMBX1 (ENSPMRG00000008152) #19	ENSPMRG00000008146	ENSPMRG00000008131 #16	MOB3C (ENSPMRG00000008123) #15	ATPAF1 (ENSPMRG00000008083) #14	ENSPMRG00000008077	EFCAB14 (ENSPMRG00000008063) #12	ENSPMRG00000008050 #9	ENSPMRG00000007903 #9	ENSPMRG00000007882 #9	ENSPMRG00000007878	ENSPMRG00000007876	ENSPMRG00000007869 #9	ENSPMRG00000007867
Argentine black and white tegu	MODERN SPECIES	16	RPS8 (ENSSMRG00000018357)	GPBP1L1 (ENSSMRG00000018356)	TMEM69 (ENSSMRG00000018355)	IPP (ENSSMRG00000018354)	ENSSMRG00000018353 #36	MAST2 (ENSSMRG00000018352) #35	PIK3R3 (ENSSMRG00000018350) #34	TSPAN1 (ENSSMRG00000018348) #33	POMGNT1 (ENSSMRG00000018347) #32	LURAP1 (ENSSMRG00000018346) #31	RAD54L (ENSSMRG00000018344) #28	LRRC41 (ENSSMRG00000018343) #27	ENSSMRG00000018342 #26	NSUN4 (ENSSMRG00000018341) #25	ENSSMRG00000018340 #22	ENSSMRG00000018339 #22	DMBX1 (ENSSMRG00000018338) #19	TMEM275 (ENSSMRG00000018337) #18	ENSSMRG00000018336 #16	MOB3C (ENSSMRG00000018334) #15	ATPAF1 (ENSSMRG00000018333) #14	EFCAB14 (ENSSMRG00000018332) #12	ENSSMRG00000018331 #9	ENSSMRG00000018315 #9	ENSSMRG00000018313 #9	PDZK1IP1 (ENSSMRG00000018312) #8	TAL1 (ENSSMRG00000018311) #7	STIL (ENSSMRG00000018309)	ENSSMRG00000018308	ENSSMRG00000018307	ENSSMRG00000018306
tuatara	MODERN SPECIES	1725			IPP (ENSSPUG00000007872)	ENSSPUG00000007957 #36	MAST2 (ENSSPUG00000008056) #35	PIK3R3 (ENSSPUG00000008274) #34	TSPAN1 (ENSSPUG00000008283) #33	POMGNT1 (ENSSPUG00000008304) #32	LURAP1 (ENSSPUG00000008406) #31	RAD54L (ENSSPUG00000008501) #28	LRRC41 (ENSSPUG00000008537) #27	ENSSPUG00000008549	NSUN4 (ENSSPUG00000008598) #25	FAAH (ENSSPUG00000008773) #24	ENSSPUG00000008796 #22	ENSSPUG00000008848 #22	ENSSPUG00000008867 #22	DMBX1 (ENSSPUG00000008894) #19	ENSSPUG00000008905 #16	MOB3C (ENSSPUG00000008916) #15	ATPAF1 (ENSSPUG00000009006) #14	EFCAB14 (ENSSPUG00000009350) #12	CYP4B1 (ENSSPUG00000009405) #9	CYP4B35 (ENSSPUG00000009557)	CYP4B36 (ENSSPUG00000009899) #9	CYP4B37 (ENSSPUG00000010107) #9	CYP4B38 (ENSSPUG00000010929) #9	TAL1 (ENSSPUG00000011173) #7	STIL (ENSSPUG00000011248)	ENSSPUG00000011504	ENSSPUG00000011518
Sauria	ANCESTRAL SPECIES	7	ENSGT00940000167241	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161441	ENSGT00940000161527.d.b.a #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000163540
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161441	ENSGT00940000161527.d.b.a #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161527.d.b.b #9	ENSGT00940000161527.d.b.a.c #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161527.d.b.a.d #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540
Elapidae	ANCESTRAL SPECIES	1	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c.b #9	ENSGT00940000161527.d.a #9	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c.b #9	ENSGT00940000161527.d.a #9	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a
Blue-lipped sea krait	MODERN SPECIES	2490																ENSLLTG00000008572 #22
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c.b #9	ENSGT00940000161527.d.a #9	ENSGT00980000201417	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000160589	ENSGT00940000163540	ENSGT00940000162270.a
Mainland tiger snake	MODERN SPECIES	13	TMEM69 (ENSNSUG00000015811)	IPP (ENSNSUG00000015812)	ENSNSUG00000015813 #36	MAST2 (ENSNSUG00000015815) #35	PIK3R3 (ENSNSUG00000016086) #34	TSPAN1 (ENSNSUG00000016088) #33	POMGNT1 (ENSNSUG00000016096) #32	LURAP1 (ENSNSUG00000016145) #31	RAD54L (ENSNSUG00000016147) #28	LRRC41 (ENSNSUG00000016149) #27	ENSNSUG00000016158 #26	NSUN4 (ENSNSUG00000016159) #25	FAAH (ENSNSUG00000016160) #24	ENSNSUG00000016161 #22	ENSNSUG00000016162 #22	ENSNSUG00000016163 #22	DMBX1 (ENSNSUG00000016164) #19	TMEM275 (ENSNSUG00000016165) #18	ENSNSUG00000016166 #16	ENSNSUG00000016167 #16	MOB3C (ENSNSUG00000016168) #15	ATPAF1 (ENSNSUG00000016169) #14	ENSNSUG00000016170	EFCAB14 (ENSNSUG00000016171) #12	ENSNSUG00000016172 #9	ENSNSUG00000016173 #9	ENSNSUG00000016174	TAL1 (ENSNSUG00000016175) #7	STIL (ENSNSUG00000016176)	CMPK1 (ENSNSUG00000016179)	ENSNSUG00000016180
Eastern brown snake	MODERN SPECIES	34	TMEM69 (ENSPTXG00000001660)	IPP (ENSPTXG00000001661)	ENSPTXG00000001662 #36	MAST2 (ENSPTXG00000001758) #35	PIK3R3 (ENSPTXG00000007104) #34	TSPAN1 (ENSPTXG00000007105) #33	POMGNT1 (ENSPTXG00000007106) #32	LURAP1 (ENSPTXG00000007107) #31	RAD54L (ENSPTXG00000007109) #28	LRRC41 (ENSPTXG00000007114) #27	ENSPTXG00000007120 #26	NSUN4 (ENSPTXG00000007122) #25	FAAH (ENSPTXG00000007124) #24	ENSPTXG00000007125 #22	ENSPTXG00000001479 #22	ENSPTXG00000001485 #22	DMBX1 (ENSPTXG00000001497) #19	ENSPTXG00000001502 #16	MOB3C (ENSPTXG00000001507) #15	ATPAF1 (ENSPTXG00000001511) #14	ENSPTXG00000001516	EFCAB14 (ENSPTXG00000001523) #12	ENSPTXG00000001527 #9	ENSPTXG00000001532 #9	ENSPTXG00000001545	ENSPTXG00000001547 #7	STIL (ENSPTXG00000001553)	ENSPTXG00000001577	ENSPTXG00000001580	FOXD2 (ENSPTXG00000001582)	TRABD2B (ENSPTXG00000001584)
Indian cobra	MODERN SPECIES	2	TMEM69 (ENSNNAG00000005287)	IPP (ENSNNAG00000005300)	ENSNNAG00000005323 #36	MAST2 (ENSNNAG00000005562) #35	PIK3R3 (ENSNNAG00000008262) #34	TSPAN1 (ENSNNAG00000008310) #33	POMGNT1 (ENSNNAG00000008355) #32	LURAP1 (ENSNNAG00000008492) #31	RAD54L (ENSNNAG00000008522) #28	LRRC41 (ENSNNAG00000008886) #27	ENSNNAG00000008904 #26	NSUN4 (ENSNNAG00000008917) #25	FAAH (ENSNNAG00000008955) #24	ENSNNAG00000009411 #22	ENSNNAG00000009445 #22	ENSNNAG00000009543 #22	DMBX1 (ENSNNAG00000009640) #19	ENSNNAG00000009684 #16	MOB3C (ENSNNAG00000009741) #15	ATPAF1 (ENSNNAG00000009764) #14	ENSNNAG00000009790	EFCAB14 (ENSNNAG00000009832) #12	ENSNNAG00000009903 #9	ENSNNAG00000009996 #9	TAL1 (ENSNNAG00000010424) #7	STIL (ENSNNAG00000010456)	CMPK1 (ENSNNAG00000010501)	ENSNNAG00000010525	FOXD2 (ENSNNAG00000010546)	TRABD2B (ENSNNAG00000010576)	SLC5A9 (ENSNNAG00000010629)
Lizard	MODERN SPECIES	3	ENSACAG00000040097	ENSACAG00000038001	PIK3R3 (ENSACAG00000015856) #34	ENSACAG00000028366	TSPAN1 (ENSACAG00000029493) #33	POMGNT1 (ENSACAG00000002424) #32	ENSACAG00000002593	LURAP1 (ENSACAG00000002422) #31	RAD54L (ENSACAG00000002312) #28	LRRC41 (ENSACAG00000002210) #27	ENSACAG00000002194 #26	NSUN4 (ENSACAG00000043184) #25	FAAH (ENSACAG00000002040) #24	ENSACAG00000001984 #22	ENSACAG00000028412 #22	ENSACAG00000029353 #22	ENSACAG00000001951 #19	ENSACAG00000001932	ENSACAG00000001870 #16	ENSACAG00000034956	ENSACAG00000001833 #15	ENSACAG00000034569	ENSACAG00000041940	ENSACAG00000035349	ENSACAG00000043345	ENSACAG00000037944	ELAVL4 (ENSACAG00000004527)	ENSACAG00000042237	DMRTA2 (ENSACAG00000007289)	FAF1 (ENSACAG00000007308)	CDKN2C (ENSACAG00000039282)
Laterata	ANCESTRAL SPECIES	3	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.a.b #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00960000192856	ENSGT00390000011196 #12	ENSGT00940000161527.c #9	ENSGT00940000161527.d.b.b #9	ENSGT00940000161527.d.b.a.c #9	ENSGT00940000161527.d.a.c #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000163540
Common wall lizard	MODERN SPECIES	14	IPP (ENSPMRG00000009620)	ENSPMRG00000009610 #36	ENSPMRG00000009604	MAST2 (ENSPMRG00000008824) #35	PIK3R3 (ENSPMRG00000008673) #34	TSPAN1 (ENSPMRG00000008655) #33	POMGNT1 (ENSPMRG00000008531) #32	LURAP1 (ENSPMRG00000008487) #31	RAD54L (ENSPMRG00000008267) #28	LRRC41 (ENSPMRG00000008224) #27	ENSPMRG00000008218 #26	NSUN4 (ENSPMRG00000008211) #25	FAAH (ENSPMRG00000008196) #24	ENSPMRG00000008178 #22	ENSPMRG00000008164 #22	ENSPMRG00000008154 #22	DMBX1 (ENSPMRG00000008152) #19	ENSPMRG00000008146	ENSPMRG00000008131 #16	MOB3C (ENSPMRG00000008123) #15	ATPAF1 (ENSPMRG00000008083) #14	ENSPMRG00000008077	EFCAB14 (ENSPMRG00000008063) #12	ENSPMRG00000008050 #9	ENSPMRG00000007903 #9	ENSPMRG00000007882 #9	ENSPMRG00000007878	ENSPMRG00000007876	ENSPMRG00000007869 #9	ENSPMRG00000007867	ENSPMRG00000007855 #9
tuatara	MODERN SPECIES	1725		IPP (ENSSPUG00000007872)	ENSSPUG00000007957 #36	MAST2 (ENSSPUG00000008056) #35	PIK3R3 (ENSSPUG00000008274) #34	TSPAN1 (ENSSPUG00000008283) #33	POMGNT1 (ENSSPUG00000008304) #32	LURAP1 (ENSSPUG00000008406) #31	RAD54L (ENSSPUG00000008501) #28	LRRC41 (ENSSPUG00000008537) #27	ENSSPUG00000008549	NSUN4 (ENSSPUG00000008598) #25	FAAH (ENSSPUG00000008773) #24	ENSSPUG00000008796 #22	ENSSPUG00000008848 #22	ENSSPUG00000008867 #22	DMBX1 (ENSSPUG00000008894) #19	ENSSPUG00000008905 #16	MOB3C (ENSSPUG00000008916) #15	ATPAF1 (ENSSPUG00000009006) #14	EFCAB14 (ENSSPUG00000009350) #12	CYP4B1 (ENSSPUG00000009405) #9	CYP4B35 (ENSSPUG00000009557)	CYP4B36 (ENSSPUG00000009899) #9	CYP4B37 (ENSSPUG00000010107) #9	CYP4B38 (ENSSPUG00000010929) #9	TAL1 (ENSSPUG00000011173) #7	STIL (ENSSPUG00000011248)	ENSSPUG00000011504	ENSSPUG00000011518	FOXD2 (ENSSPUG00000011531)
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00940000167241	ENSGT00420000029753.b	ENSGT00390000015318	ENSGT00940000158629	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000163316.a.a #22	ENSGT00940000161237 #24	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161527.c.e #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000163540	ENSGT00940000162270.a	ENSGT00940000157140.b.a.b.a
Cryptodira	ANCESTRAL SPECIES	8					ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000163316.a.a #22	ENSGT00940000161237 #24	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161527.c.e #9	ENSGT00940000161527.c.f #9	ENSGT00940000161527.d.b.b #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310	ENSGT00940000163540
Testudinoidea	ANCESTRAL SPECIES	5					ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000163316.a.a #22	ENSGT00940000161237 #24	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161527.c.e #9	ENSGT00940000161527.c.f #9	ENSGT00940000161441	ENSGT00940000161527.d.b.a #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Testudinidae	ANCESTRAL SPECIES	33	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000157700	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00950000185760	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000163316.a.a #22	ENSGT00940000161237 #24	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161527.c.e #9	ENSGT00940000161527.c.f #9	ENSGT00940000161441	ENSGT00940000161527.d.b.a #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
Abingdon island giant tortoise	MODERN SPECIES	2304				MAST2 (ENSCABG00000011920) #35	PIK3R3 (ENSCABG00000011830) #34	ENSCABG00000011829	TSPAN1 (ENSCABG00000011827) #33	POMGNT1 (ENSCABG00000011271) #32	LURAP1 (ENSCABG00000011246) #31	RAD54L (ENSCABG00000011204) #28	LRRC41 (ENSCABG00000011153) #27	ENSCABG00000011149 #26	NSUN4 (ENSCABG00000011147) #25	ENSCABG00000011145 #22	ENSCABG00000011142 #24	ENSCABG00000011138 #22	DMBX1 (ENSCABG00000011137) #19	TMEM275 (ENSCABG00000011136) #18	ENSCABG00000011135 #16	MOB3C (ENSCABG00000011134) #15	ATPAF1 (ENSCABG00000011133) #14	TEX38 (ENSCABG00000011132)	EFCAB14 (ENSCABG00000011128) #12	ENSCABG00000010908 #9	ENSCABG00000010415 #9	CYP4B1 (ENSCABG00000010391)	ENSCABG00000010355 #9	ENSCABG00000010253 #9	PDZK1IP1 (ENSCABG00000010251) #8	TAL1 (ENSCABG00000010248) #7	STIL (ENSCABG00000010245)
Goode s thornscrub tortoise	MODERN SPECIES	22	TMEM69 (ENSGEVG00005020507)	IPP (ENSGEVG00005020503)	ENSGEVG00005020502 #36	MAST2 (ENSGEVG00005020025) #35	PIK3R3 (ENSGEVG00005019739) #34	ENSGEVG00005019734	TSPAN1 (ENSGEVG00005019729) #33	POMGNT1 (ENSGEVG00005019721) #32	LURAP1 (ENSGEVG00005019716) #31	RAD54L (ENSGEVG00005019699) #28	LRRC41 (ENSGEVG00005019676) #27	ENSGEVG00005019659 #26	NSUN4 (ENSGEVG00005019648) #25	ENSGEVG00005019637 #22	FAAH (ENSGEVG00005019620) #24	ENSGEVG00005019602 #22	DMBX1 (ENSGEVG00005019588) #19	ENSGEVG00005019576 #16	MOB3C (ENSGEVG00005019561) #15	ATPAF1 (ENSGEVG00005019541) #14	TEX38 (ENSGEVG00005019533)	EFCAB14 (ENSGEVG00005019524) #12	ENSGEVG00005019451 #9	ENSGEVG00005019318 #9	ENSGEVG00005019175 #9	ENSGEVG00005018800 #9	PDZK1IP1 (ENSGEVG00005018742) #8	TAL1 (ENSGEVG00005018730) #7	STIL (ENSGEVG00005018571)	ENSGEVG00005018548	ENSGEVG00005018529
Emydidae	ANCESTRAL SPECIES	22	ENSGT00390000015318	ENSGT00940000158629	ENSGT00950000183144.B #36	ENSGT00940000157700	ENSGT00940000155705.b #35	ENSGT00940000156259.b #34	ENSGT00940000158851 #33	ENSGT00530000063632.A #32	ENSGT00530000063790.a #31	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT00390000012765 #14	ENSGT00390000016446	ENSGT00390000011196 #12	ENSGT00940000161527.c.e #9	ENSGT00940000161527.c.f #9	ENSGT00940000161441	ENSGT00940000161527.d.b.a #9	ENSGT00940000161527.d.a #9	ENSGT00940000154660.b #8	ENSGT00940000159889 #7	ENSGT00390000007310
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	1031				ENSCPBG00000018637	ENSCPBG00000018643	ENSCPBG00000018646	ENSCPBG00000018650	ENSCPBG00000018653	ENSCPBG00000018657	ENSCPBG00000018661	ENSCPBG00000018662	ENSCPBG00000018664	THAP7 (ENSCPBG00000018688)	ENSCPBG00000018704 #24	ENSCPBG00000018712 #22	ENSCPBG00000018720 #22	NSUN4 (ENSCPBG00000018725) #25	ENSCPBG00000018727 #26
painted turtle	MODERN SPECIES	698	MRPL37 (ENSCPBG00000003477)	SSBP3 (ENSCPBG00000003485)	ACOT11 (ENSCPBG00000003530)	ENSCPBG00000003594	ENSCPBG00000003602	TTC4 (ENSCPBG00000003619)	ENSCPBG00000003643	PARS2 (ENSCPBG00000003691)	TTC22 (ENSCPBG00000003705)	LEXM (ENSCPBG00000003744)	DHCR24 (ENSCPBG00000003766)	TMEM61 (ENSCPBG00000003777)	BSND (ENSCPBG00000003792)	PCSK9 (ENSCPBG00000003984)	USP24 (ENSCPBG00000008926)	ENSCPBG00000008948 #22	DMBX1 (ENSCPBG00000008953) #19	TMEM275 (ENSCPBG00000008960) #18	ENSCPBG00000008965 #16	MOB3C (ENSCPBG00000008983) #15	ATPAF1 (ENSCPBG00000008995) #14	TEX38 (ENSCPBG00000009005)	EFCAB14 (ENSCPBG00000009010) #12	ENSCPBG00000009018 #9	ENSCPBG00000009058 #9	ENSCPBG00000009449 #9	ENSCPBG00000009470 #9	ENSCPBG00000009505 #9	ENSCPBG00000009551 #9	ENSCPBG00000009792 #9	ENSCPBG00000009909 #9
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	47	ENSTMTG00000008619	STIL (ENSTMTG00000008637)	TAL1 (ENSTMTG00000008852) #7	ENSTMTG00000008864	ENSTMTG00000008883 #9	ENSTMTG00000008967 #9	ENSTMTG00000009631	ENSTMTG00000009718 #9	EFCAB14 (ENSTMTG00000010371) #12	ATPAF1 (ENSTMTG00000010398) #14	MOB3C (ENSTMTG00000010428) #15	ENSTMTG00000010437 #16	DMBX1 (ENSTMTG00000010467) #19	ENSTMTG00000010486 #22	ENSTMTG00000010541 #24	ENSTMTG00000010676 #22	ENSTMTG00000010712	NSUN4 (ENSTMTG00000010730) #25	LRRC41 (ENSTMTG00000010766) #27	RAD54L (ENSTMTG00000011057) #28	ENSTMTG00000011632	LURAP1 (ENSTMTG00000011643) #31	POMGNT1 (ENSTMTG00000011662) #32	TSPAN1 (ENSTMTG00000011697) #33	PIK3R3 (ENSTMTG00000000080) #34	MAST2 (ENSTMTG00000000486) #35	ENSTMTG00000001174 #36	IPP (ENSTMTG00000001195)	TMEM69 (ENSTMTG00000001208)	GPBP1L1 (ENSTMTG00000001221)	ENSTMTG00000001232
Three-toed box turtle	MODERN SPECIES	47	TMEM69 (ENSTMTG00000001208)	IPP (ENSTMTG00000001195)	ENSTMTG00000001174 #36	MAST2 (ENSTMTG00000000486) #35	PIK3R3 (ENSTMTG00000000080) #34	TSPAN1 (ENSTMTG00000011697) #33	POMGNT1 (ENSTMTG00000011662) #32	LURAP1 (ENSTMTG00000011643) #31	ENSTMTG00000011632	RAD54L (ENSTMTG00000011057) #28	LRRC41 (ENSTMTG00000010766) #27	NSUN4 (ENSTMTG00000010730) #25	ENSTMTG00000010712	ENSTMTG00000010676 #22	ENSTMTG00000010541 #24	ENSTMTG00000010486 #22	DMBX1 (ENSTMTG00000010467) #19	ENSTMTG00000010437 #16	MOB3C (ENSTMTG00000010428) #15	ATPAF1 (ENSTMTG00000010398) #14	EFCAB14 (ENSTMTG00000010371) #12	ENSTMTG00000009718 #9	ENSTMTG00000009631	ENSTMTG00000008967 #9	ENSTMTG00000008883 #9	ENSTMTG00000008864	TAL1 (ENSTMTG00000008852) #7	STIL (ENSTMTG00000008637)	ENSTMTG00000008619	ENSTMTG00000008607	ENSTMTG00000008602
Archosauria	ANCESTRAL SPECIES	11	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Australian saltwater crocodile	MODERN SPECIES	28	STIL (ENSCPRG00005018027)	TAL1 (ENSCPRG00005018024) #7	ENSCPRG00005018022	ENSCPRG00005017986 #9	ENSCPRG00005017973 #9	EFCAB14 (ENSCPRG00005017964) #12	ENSCPRG00005017961	ATPAF1 (ENSCPRG00005017958) #14	MOB3C (ENSCPRG00005017953) #15	ENSCPRG00005017951 #16	TMEM275 (ENSCPRG00005017950) #18	DMBX1 (ENSCPRG00005017947) #19	RAD54L (ENSCPRG00005017943) #28	ENSCPRG00005017941 #22	ENSCPRG00005017938 #22	ENSCPRG00005017934 #22	NSUN4 (ENSCPRG00005017933) #25	ENSCPRG00005017930 #26	LRRC41 (ENSCPRG00005017926) #27	LURAP1 (ENSCPRG00005017917) #31	POMGNT1 (ENSCPRG00005017911) #32	TSPAN1 (ENSCPRG00005017902) #33	PIK3R3 (ENSCPRG00005017894) #34	ENSCPRG00005017887	MAST2 (ENSCPRG00005017882) #35	ENSCPRG00005017875 #36	IPP (ENSCPRG00005017866)	GPBP1L1 (ENSCPRG00005017857)	NASP (ENSCPRG00005017842)	AKR1A1 (ENSCPRG00005017833)	PRDX1 (ENSCPRG00005017830)
Aves	ANCESTRAL SPECIES	7	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Neognathae	ANCESTRAL SPECIES	8	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Great tit	MODERN SPECIES	28	FOXE1 (ENSPMJG00000000299)	ENSPMJG00000000275	STIL (ENSPMJG00000000254)	TAL1 (ENSPMJG00000000238) #7	PDZK1IP1 (ENSPMJG00000000226) #8	ENSPMJG00000000216 #9	ENSPMJG00000000189 #9	EFCAB14 (ENSPMJG00000000135) #12	ATPAF1 (ENSPMJG00000000092) #14	MOB3C (ENSPMJG00000000048) #15	ENSPMJG00000019632 #16	TMEM275 (ENSPMJG00000019631) #18	DMBX1 (ENSPMJG00000019630) #19	FAAH (ENSPMJG00000019628) #24	ENSPMJG00000019627 #22	ENSPMJG00000019624 #22	NSUN4 (ENSPMJG00000019620) #25	ENSPMJG00000019616 #26	LRRC41 (ENSPMJG00000019615) #27	RAD54L (ENSPMJG00000019613) #28	LURAP1 (ENSPMJG00000019612) #31	POMGNT1 (ENSPMJG00000019610) #32	TSPAN1 (ENSPMJG00000019609) #33	PIK3R3 (ENSPMJG00000019608) #34	MAST2 (ENSPMJG00000019600) #35	ENSPMJG00000019595 #36	IPP (ENSPMJG00000019594)	TMEM69 (ENSPMJG00000019593)	GPBP1L1 (ENSPMJG00000019592)	ENSPMJG00000019591	AKR1A1 (ENSPMJG00000019587)
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Flycatcher	MODERN SPECIES	27	SLC5A9 (ENSFALG00000005278)	TRABD2B (ENSFALG00000005263)	ENSFALG00000009291	ENSFALG00000025721	STIL (ENSFALG00000009298)	TAL1 (ENSFALG00000009303) #7	PDZK1IP1 (ENSFALG00000009311) #8	ENSFALG00000009327 #9	ENSFALG00000009359 #9	EFCAB14 (ENSFALG00000009363) #12	ATPAF1 (ENSFALG00000028925) #14	MOB3C (ENSFALG00000009374) #15	ENSFALG00000009378 #16	ENSFALG00000024196 #19	ENSFALG00000009400 #24	ENSFALG00000009429 #22	NSUN4 (ENSFALG00000028643) #25	ENSFALG00000028231 #26	LRRC41 (ENSFALG00000009461) #27	RAD54L (ENSFALG00000009480) #28	LURAP1 (ENSFALG00000009504) #31	POMGNT1 (ENSFALG00000009510) #32	TSPAN1 (ENSFALG00000009516) #33	PIK3R3 (ENSFALG00000009521) #34	MAST2 (ENSFALG00000009528) #35	ENSFALG00000009535 #36	IPP (ENSFALG00000009544)	TMEM69 (ENSFALG00000009547)	GPBP1L1 (ENSFALG00000009548)	AKR1A1 (ENSFALG00000009600)	NASP (ENSFALG00000009566)
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Medium ground finch	MODERN SPECIES	50	SLC5A9 (ENSGFOG00000011742)	SPATA6 (ENSGFOG00000011726)	TRABD2B (ENSGFOG00000011719)	ENSGFOG00000011713	STIL (ENSGFOG00000011699)	TAL1 (ENSGFOG00000011696) #7	ENSGFOG00000011241 #9	ENSGFOG00000010906 #9	EFCAB14 (ENSGFOG00000010880) #12	ENSGFOG00000010874	ATPAF1 (ENSGFOG00000010864) #14	MOB3C (ENSGFOG00000010857) #15	ENSGFOG00000010842 #16	DMBX1 (ENSGFOG00000010834) #19	FAAH (ENSGFOG00000010792) #24	ENSGFOG00000010777 #22	NSUN4 (ENSGFOG00000010770) #25	ENSGFOG00000010765 #26	LRRC41 (ENSGFOG00000010756) #27	RAD54L (ENSGFOG00000010680) #28	POMGNT1 (ENSGFOG00000010649) #32	TSPAN1 (ENSGFOG00000010599) #33	PIK3R3 (ENSGFOG00000010593) #34	MAST2 (ENSGFOG00000010136) #35	ENSGFOG00000010077 #36	IPP (ENSGFOG00000010074)	TMEM69 (ENSGFOG00000010069)	GPBP1L1 (ENSGFOG00000010064)	NASP (ENSGFOG00000010057)	AKR1A1 (ENSGFOG00000010053)	PRDX1 (ENSGFOG00000010049)
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Zebra finch	MODERN SPECIES	30	ENSTGUG00000008563	STIL (ENSTGUG00000008545)	TAL1 (ENSTGUG00000008542) #7	PDZK1IP1 (ENSTGUG00000008532) #8	ENSTGUG00000008524 #9	ENSTGUG00000008418 #9	EFCAB14 (ENSTGUG00000008408) #12	ENSTGUG00000019172	ATPAF1 (ENSTGUG00000008394) #14	MOB3C (ENSTGUG00000008386) #15	ENSTGUG00000008358 #16	TMEM275 (ENSTGUG00000027598) #18	DMBX1 (ENSTGUG00000008353) #19	FAAH (ENSTGUG00000008323) #24	ENSTGUG00000017201 #22	ENSTGUG00000008319 #22	NSUN4 (ENSTGUG00000021857) #25	UQCRH (ENSTGUG00000008278) #26	LRRC41 (ENSTGUG00000008262) #27	RAD54L (ENSTGUG00000008233) #28	LURAP1 (ENSTGUG00000020108) #31	POMGNT1 (ENSTGUG00000008179) #32	TSPAN1 (ENSTGUG00000008165) #33	PIK3R3 (ENSTGUG00000008122) #34	MAST2 (ENSTGUG00000008089) #35	ENSTGUG00000020094 #36	IPP (ENSTGUG00000008061)	TMEM69 (ENSTGUG00000008059)	GPBP1L1 (ENSTGUG00000008044)	NASP (ENSTGUG00000008032)	AKR1A1 (ENSTGUG00000007993)
Common canary	MODERN SPECIES	9	TRABD2B (ENSSCAG00000003575)	FOXE1 (ENSSCAG00000003549)	ENSSCAG00000003547	STIL (ENSSCAG00000003537)	ENSSCAG00000003518 #7	PDZK1IP1 (ENSSCAG00000003514) #8	ENSSCAG00000003305 #9	ENSSCAG00000003281 #9	EFCAB14 (ENSSCAG00000003273) #12	ATPAF1 (ENSSCAG00000003265) #14	MOB3C (ENSSCAG00000003260) #15	ENSSCAG00000003252 #16	TMEM275 (ENSSCAG00000003248) #18	DMBX1 (ENSSCAG00000003244) #19	ENSSCAG00000003239 #24	ENSSCAG00000003233 #22	NSUN4 (ENSSCAG00000003229) #25	ENSSCAG00000003227 #26	LRRC41 (ENSSCAG00000003220) #27	RAD54L (ENSSCAG00000003152) #28	LURAP1 (ENSSCAG00000003134) #31	POMGNT1 (ENSSCAG00000003126) #32	TSPAN1 (ENSSCAG00000003114) #33	PIK3R3 (ENSSCAG00000003105) #34	MAST2 (ENSSCAG00000001759) #35	ENSSCAG00000001368 #36	IPP (ENSSCAG00000001357)	TMEM69 (ENSSCAG00000001344)	GPBP1L1 (ENSSCAG00000001337)	ENSSCAG00000001327	ENSSCAG00000001319
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Golden eagle	MODERN SPECIES	3	FOXD2 (ENSACCG00020009458)	ENSACCG00020009444	ENSACCG00020009431	ENSACCG00020009428	STIL (ENSACCG00020009378)	TAL1 (ENSACCG00020009310) #7	PDZK1IP1 (ENSACCG00020009303) #8	ENSACCG00020009286 #9	ENSACCG00020009272 #9	EFCAB14 (ENSACCG00020009253) #12	ATPAF1 (ENSACCG00020009237) #14	MOB3C (ENSACCG00020009219) #15	ENSACCG00020009204 #16	DMBX1 (ENSACCG00020009185) #19	FAAH (ENSACCG00020009164) #24	ENSACCG00020009114 #22	ENSACCG00020009073	ENSACCG00020009065 #26	LRRC41 (ENSACCG00020009052) #27	RAD54L (ENSACCG00020009028) #28	ENSACCG00020009010	LURAP1 (ENSACCG00020008999) #31	POMGNT1 (ENSACCG00020008982) #32	TSPAN1 (ENSACCG00020008954) #33	PIK3R3 (ENSACCG00020008935) #34	MAST2 (ENSACCG00020008823) #35	ENSACCG00020008724 #36	IPP (ENSACCG00020008705)	TMEM69 (ENSACCG00020008697)	GPBP1L1 (ENSACCG00020008683)	NASP (ENSACCG00020008664)
Kakapo	MODERN SPECIES	25	ENSSHBG00005007170	STIL (ENSSHBG00005007114)	TAL1 (ENSSHBG00005007088) #7	PDZK1IP1 (ENSSHBG00005007075) #8	ENSSHBG00005006437 #9	ENSSHBG00005006306 #9	EFCAB14 (ENSSHBG00005006278) #12	ATPAF1 (ENSSHBG00005006246) #14	MOB3C (ENSSHBG00005006236) #15	ENSSHBG00005006223	ENSSHBG00005006177 #16	TMEM275 (ENSSHBG00005006147) #18	DMBX1 (ENSSHBG00005006125) #19	FAAH (ENSSHBG00005006094) #24	ENSSHBG00005006062 #22	ENSSHBG00005006024 #22	NSUN4 (ENSSHBG00005006011) #25	ENSSHBG00005006002 #26	LRRC41 (ENSSHBG00005005972) #27	RAD54L (ENSSHBG00005005827) #28	LURAP1 (ENSSHBG00005005795) #31	POMGNT1 (ENSSHBG00005005775) #32	TSPAN1 (ENSSHBG00005005758) #33	PIK3R3 (ENSSHBG00005005718) #34	MAST2 (ENSSHBG00005005596) #35	ENSSHBG00005005524 #36	IPP (ENSSHBG00005005497)	TMEM69 (ENSSHBG00005005478)	GPBP1L1 (ENSSHBG00005005468)	NASP (ENSSHBG00005005428)	AKR1A1 (ENSSHBG00005005391)
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Anatidae	ANCESTRAL SPECIES	5	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000155505.a #19	ENSGT00940000161237 #24	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Duck	MODERN SPECIES	26	SLC5A9 (ENSAPLG00000007144)	ENSAPLG00000022301 ##29	TRABD2B (ENSAPLG00000007124)	ENSAPLG00000028912	ENSAPLG00000029939	STIL (ENSAPLG00000010138)	ENSAPLG00000009571 #9	EFCAB14 (ENSAPLG00000026113) #12	ATPAF1 (ENSAPLG00000009308) #14	MOB3C (ENSAPLG00000009181) #15	ENSAPLG00000008479 #16	TMEM275 (ENSAPLG00000018210) #18	DMBX1 (ENSAPLG00000008404) #19	FAAH (ENSAPLG00000007898) #24	ENSAPLG00000007474 #22	ENSAPLG00000007374 #22	NSUN4 (ENSAPLG00000007241) #25	ENSAPLG00000007037 #26	LRRC41 (ENSAPLG00000006638) #27	RAD54L (ENSAPLG00000006389) #28	LURAP1 (ENSAPLG00000030348) #31	POMGNT1 (ENSAPLG00000007878) #32	TSPAN1 (ENSAPLG00000007619) #33	PIK3R3 (ENSAPLG00000006823) #34	MAST2 (ENSAPLG00000006200) #35	ENSAPLG00000006104 #36	IPP (ENSAPLG00000005658)	TMEM69 (ENSAPLG00000005652)	GPBP1L1 (ENSAPLG00000005350)	NASP (ENSAPLG00000004941)	AKR1A1 (ENSAPLG00000007260)
Pink-footed goose	MODERN SPECIES	1	ENSABRG00000016705	ENSABRG00000016710	STIL (ENSABRG00000016714)	TAL1 (ENSABRG00000016716) #7	PDZK1IP1 (ENSABRG00000016718) #8	ENSABRG00000016720 #9	ENSABRG00000016721 #9	EFCAB14 (ENSABRG00000016757) #12	ATPAF1 (ENSABRG00000016766) #14	MOB3C (ENSABRG00000016771) #15	ENSABRG00000016779 #16	TMEM275 (ENSABRG00000016800) #18	DMBX1 (ENSABRG00000016803) #19	ENSABRG00000016807	ENSABRG00000016808 #22	ENSABRG00000016829 #22	NSUN4 (ENSABRG00000016836) #25	ENSABRG00000016838 #26	LRRC41 (ENSABRG00000016846) #27	RAD54L (ENSABRG00000016858) #28	LURAP1 (ENSABRG00000016908) #31	POMGNT1 (ENSABRG00000016911) #32	TSPAN1 (ENSABRG00000016928) #33	ENSABRG00000016940 ##34	PIK3R3 (ENSABRG00000016952) #34	MAST2 (ENSABRG00000016971) #35	ENSABRG00000017000 #36	IPP (ENSABRG00000017006)	TMEM69 (ENSABRG00000017007)	GPBP1L1 (ENSABRG00000017008)	NASP (ENSABRG00000017014)
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00390000008086 #18	ENSGT00940000161237 #24	ENSGT00940000155505.a #19	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b.`b #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00940000161273	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889 #7	ENSGT00940000154660.b #8	ENSGT00940000161527.d.a #9	ENSGT00940000161527.c.e #9	ENSGT00390000011196 #12	ENSGT00390000012765 #14	ENSGT01050000244898.a.a.b #15	ENSGT00940000154587.a.a #16	ENSGT00940000161237 #24	ENSGT00940000155505.a #19	ENSGT00940000163316.a.a #22	ENSGT00940000163316.b #22	ENSGT00940000153665.b.a.b #25	ENSGT00390000003860 #26	ENSGT00390000015908 #27	ENSGT00940000156897 #28	ENSGT00530000063790.a #31	ENSGT00530000063632.A #32	ENSGT00940000158851 #33	ENSGT00940000156259.b #34	ENSGT00940000155705.b.`b.a #35	ENSGT00950000183144.B #36	ENSGT00940000158629	ENSGT00390000015318	ENSGT00420000029753.b	ENSGT00390000016650	ENSGT00940000156539
Chicken	MODERN SPECIES	37	SPATA6 (ENSGALG00010024758)	SLC5A9 (ENSGALG00010024728)	TRABD2B (ENSGALG00010024695)	ENSGALG00010026936	CMPK1 (ENSGALG00010024686)	STIL (ENSGALG00010024669)	TAL1 (ENSGALG00010022991) #7	PDZK1IP1 (ENSGALG00010022948) #8	CYP4B7 (ENSGALG00010022917) #9	EFCAB14 (ENSGALG00010022874) #12	ATPAF1 (ENSGALG00010022867) #14	MOB3C (ENSGALG00010022860) #15	MKNK1 (ENSGALG00010023356) #16	DMBX1 (ENSGALG00010022675) #19	VDHAP (ENSGALG00010027076) #22	ENSGALG00010022999 #22	NSUN4 (ENSGALG00010023124) #25	UQCRHL (ENSGALG00010023114) #26	LRRC41 (ENSGALG00010023090) #27	RAD54L (ENSGALG00010023052) #28	LURAP1 (ENSGALG00010023097) #31	POMGNT1 (ENSGALG00010023073) #32	TSPAN1 (ENSGALG00010023330) #33	PIK3R3 (ENSGALG00010023309) #34	ENSGALG00010026498 #35	RBP (ENSGALG00010026367) #36	IPP (ENSGALG00010026335)	TMEM69 (ENSGALG00010026325)	GPBP1L1 (ENSGALG00010026321)	NASP (ENSGALG00010026287)	AKR1A1 (ENSGALG00010026213)
Japanese quail	MODERN SPECIES	26	FOXD2 (ENSCJPG00005010080)	ENSCJPG00005010079	ENSCJPG00005010078	STIL (ENSCJPG00005010077)	TAL1 (ENSCJPG00005010076) #7	ENSCJPG00005010075 #9	ENSCJPG00005010074 #9	EFCAB14 (ENSCJPG00005010073) #12	ATPAF1 (ENSCJPG00005010072) #14	MOB3C (ENSCJPG00005010071) #15	ENSCJPG00005010070 #16	TMEM275 (ENSCJPG00005010069) #18	DMBX1 (ENSCJPG00005010066) #19	FAAH (ENSCJPG00005010065) #24	ENSCJPG00005010064 #22	ENSCJPG00005010063 #22	NSUN4 (ENSCJPG00005010062) #25	LRRC41 (ENSCJPG00005010061) #27	RAD54L (ENSCJPG00005010060) #28	LURAP1 (ENSCJPG00005010059) #31	POMGNT1 (ENSCJPG00005010058) #32	TSPAN1 (ENSCJPG00005010057) #33	PIK3R3 (ENSCJPG00005010056) #34	MAST2 (ENSCJPG00005010055) #35	ENSCJPG00005010054 #36	IPP (ENSCJPG00005010026)	TMEM69 (ENSCJPG00005010025)	GPBP1L1 (ENSCJPG00005009998)	NASP (ENSCJPG00005009996)	AKR1A1 (ENSCJPG00005009995)	PRDX1 (ENSCJPG00005009947)
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	578	TRABD2B (ENSSCUG00000012332)	ENSSCUG00000012336	STIL (ENSSCUG00000012337)	TAL1 (ENSSCUG00000012338) #7	PDZK1IP1 (ENSSCUG00000012339) #8	ENSSCUG00000012340 #9	ENSSCUG00000012342 #9	EFCAB14 (ENSSCUG00000012343) #12	ATPAF1 (ENSSCUG00000012344) #14	MOB3C (ENSSCUG00000012345) #15	ENSSCUG00000012346 #16	DMBX1 (ENSSCUG00000012347) #19	ENSSCUG00000012348 #22	FAAH (ENSSCUG00000012349) #24	ENSSCUG00000012351 #22	ENSSCUG00000012354 #22	NSUN4 (ENSSCUG00000012356) #25	ENSSCUG00000012357	ENSSCUG00000012358 #26	LRRC41 (ENSSCUG00000012360) #27	RAD54L (ENSSCUG00000012362) #28	ENSSCUG00000012368 #32	TSPAN1 (ENSSCUG00000012372) #33
African ostrich	MODERN SPECIES	578						TSPAN1 (ENSSCUG00000012372) #33	ENSSCUG00000012368 #32	RAD54L (ENSSCUG00000012362) #28	LRRC41 (ENSSCUG00000012360) #27	ENSSCUG00000012358 #26	ENSSCUG00000012357	NSUN4 (ENSSCUG00000012356) #25	ENSSCUG00000012354 #22	ENSSCUG00000012351 #22	FAAH (ENSSCUG00000012349) #24	ENSSCUG00000012348 #22	DMBX1 (ENSSCUG00000012347) #19	ENSSCUG00000012346 #16	MOB3C (ENSSCUG00000012345) #15	ATPAF1 (ENSSCUG00000012344) #14	EFCAB14 (ENSSCUG00000012343) #12	ENSSCUG00000012342 #9	ENSSCUG00000012340 #9	PDZK1IP1 (ENSSCUG00000012339) #8	TAL1 (ENSSCUG00000012338) #7	STIL (ENSSCUG00000012337)	ENSSCUG00000012336	TRABD2B (ENSSCUG00000012332)	SLC5A9 (ENSSCUG00000012331)	SPATA6 (ENSSCUG00000012330)	AGBL4 (ENSSCUG00000012327)
Coelacanth	DUPLICATION
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	391					uqcrh (ENSLACG00000017471) #26	ENSLACG00000017333 #22	DMBX1 (ENSLACG00000017136) #19	TMEM275 (ENSLACG00000016222) #18	mknk1 (ENSLACG00000015271) #16	MOB3C (ENSLACG00000014783) #15	ATPAF1 (ENSLACG00000014427) #14	EFCAB14 (ENSLACG00000014039) #12	cyp4t8 (ENSLACG00000013669) #9	cyp4t8 (ENSLACG00000013282) #9	ENSLACG00000012718 #22	ENSLACG00000012087 #22	TAL1 (ENSLACG00000011366) #7	STIL (ENSLACG00000010678)	CMPK1 (ENSLACG00000010172)	foxe3 (ENSLACG00000009117)	FOXD2 (ENSLACG00000008597)
Coelacanth	MODERN SPECIES	391										FOXD2 (ENSLACG00000008597)	foxe3 (ENSLACG00000009117)	CMPK1 (ENSLACG00000010172)	STIL (ENSLACG00000010678)	TAL1 (ENSLACG00000011366) #7	ENSLACG00000012087 #22	ENSLACG00000012718 #22	cyp4t8 (ENSLACG00000013282) #9	cyp4t8 (ENSLACG00000013669) #9	EFCAB14 (ENSLACG00000014039) #12	ATPAF1 (ENSLACG00000014427) #14	MOB3C (ENSLACG00000014783) #15	mknk1 (ENSLACG00000015271) #16	TMEM275 (ENSLACG00000016222) #18	DMBX1 (ENSLACG00000017136) #19	ENSLACG00000017333 #22	uqcrh (ENSLACG00000017471) #26
Coelacanth	MODERN SPECIES	391															uqcrh (ENSLACG00000017471) #26	ENSLACG00000017333 #22	DMBX1 (ENSLACG00000017136) #19	TMEM275 (ENSLACG00000016222) #18	mknk1 (ENSLACG00000015271) #16	MOB3C (ENSLACG00000014783) #15	ATPAF1 (ENSLACG00000014427) #14	EFCAB14 (ENSLACG00000014039) #12	cyp4t8 (ENSLACG00000013669) #9	cyp4t8 (ENSLACG00000013282) #9	ENSLACG00000012718 #22	ENSLACG00000012087 #22	TAL1 (ENSLACG00000011366) #7	STIL (ENSLACG00000010678)	CMPK1 (ENSLACG00000010172)	foxe3 (ENSLACG00000009117)	FOXD2 (ENSLACG00000008597)
Actinopterygii	ANCESTRAL SPECIES	23	ENSGT00940000160138	ENSGT00940000163762.a.a	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.b	ENSGT00940000159643	ENSGT00940000157285	ENSGT00950000182993.B.a	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d	ENSGT00950000183104.A.a.a	ENSGT00390000009595.a	ENSGT00940000154290.a	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT01030000234559.a.b	ENSGT00390000003420.a.b	ENSGT00940000156826	ENSGT00940000157207.b	ENSGT00940000160043
Neopterygii	ANCESTRAL SPECIES	9	ENSGT00940000166382	ENSGT00940000163762.a.a	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.b	ENSGT00940000159643	ENSGT00940000157285.e	ENSGT00950000182993.B.a	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000153665.b.a.b #25	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086 #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT01050000244838.H.d.c	ENSGT00950000183104.A.a.a	ENSGT00390000009595.a	ENSGT00940000154290.a	ENSGT00940000154296.b.a	ENSGT00530000063273.a	ENSGT01030000234559.a.b	ENSGT00390000003420.a.b	ENSGT00940000156826	ENSGT00940000157207.b
Osteoglossocephalai	ANCESTRAL SPECIES	16	ENSGT00390000010047.g.a	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.b	ENSGT00940000154930.db	ENSGT00940000159643	ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00940000153665.b.a.b #25	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860 #26	ENSGT00940000163316 #22	ENSGT00940000155505.a #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00390000008086.a #18	ENSGT01030000235901	ENSGT01050000244838.H.d.c	ENSGT00950000183104.A.a.a	ENSGT00390000009595.a	ENSGT00940000154290.a	ENSGT00940000154296.b.a	ENSGT00530000063273.a	ENSGT01030000234559.a.b	ENSGT00390000003420.a.b
Clupeocephala	ANCESTRAL SPECIES	44	ENSGT00940000163676	ENSGT00390000010047.g.b	ENSGT00660000095605.e	ENSGT00940000163762.a.b	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.b	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb	ENSGT00940000157285.f	ENSGT00950000182993.B.a.d	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.a	ENSGT00940000166653	ENSGT00940000154296.b.a	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485
Otomorpha	ANCESTRAL SPECIES	30	ENSGT00940000163676	ENSGT00940000177801	ENSGT00390000010047.g.a	ENSGT00660000095605.e	ENSGT00940000163762.a.b	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb	ENSGT00940000157285.f	ENSGT00950000182993.B.a.d	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404
Clupeiformes	ANCESTRAL SPECIES	132	ENSGT00390000017398	ENSGT01030000234635.a.a.a.a	ENSGT00940000156924	ENSGT00950000183036.a.a.g	ENSGT00940000156988	ENSGT00940000159127	ENSGT00940000161304.b	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT00940000157285.f	ENSGT00950000182993.B.a.d	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00960000186850	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404	ENSGT00940000156460.B
Atlantic herring	MODERN SPECIES	1	CBARP (ENSCHAG00000022063)	atp5f1d (ENSCHAG00000022065)	midn (ENSCHAG00000022076)	TUT4 (ENSCHAG00000022100)	gpx7 (ENSCHAG00000022638)	SHISAL2A (ENSCHAG00000022650)	slc1a7b (ENSCHAG00000022670)	PODN (ENSCHAG00000022791)	scp2b (ENSCHAG00000022810)	st3gal3a (ENSCHAG00000022851)	ENSCHAG00000022984	rad54l (ENSCHAG00000023002) #28	ENSCHAG00000023110 #27	RDH13 (ENSCHAG00000023117)	ENSCHAG00000023122	ENSCHAG00000023135 #22	dmbx1b (ENSCHAG00000023185) #19	mknk1 (ENSCHAG00000023200) #16	mob3c (ENSCHAG00000023261) #15	elovl1b (ENSCHAG00000023269)	ENSCHAG00000023285	btf3l4 (ENSCHAG00000023317)	ptgfr (ENSCHAG00000023340)	st6galnac5b (ENSCHAG00000023354)	SLC44A5 (ENSCHAG00000023459)	ENSCHAG00000025359	erich3 (ENSCHAG00000025370)	tnni3k (ENSCHAG00000025379)	fpgt (ENSCHAG00000025390)	ENSCHAG00000025393	acot11b (ENSCHAG00000025430)
Denticle herring	MODERN SPECIES	4	ENSDCDG00000028810	DNAI3 (ENSDCDG00000028812)	MCOLN3 (ENSDCDG00000028814)	ENSDCDG00000028827	TUT4 (ENSDCDG00000028878)	gpx7 (ENSDCDG00000029788)	slc1a7b (ENSDCDG00000029790)	PODN (ENSDCDG00000029798)	scp2b (ENSDCDG00000029799)	st3gal3a (ENSDCDG00000029808)	ENSDCDG00000029836	rad54l (ENSDCDG00000029850) #28	ENSDCDG00000029894 #27	ENSDCDG00000029900	uqcrh (ENSDCDG00000029902) #26	ENSDCDG00000029914 #22	dmbx1b (ENSDCDG00000029936) #19	mknk1 (ENSDCDG00000029971) #16	mob3c (ENSDCDG00000030715) #15	elovl1b (ENSDCDG00000030717)	ENSDCDG00000030720	btf3l4 (ENSDCDG00000030723)	org (ENSDCDG00000030724)	ENSDCDG00000030734	ENSDCDG00000031019	mllt1b (ENSDCDG00000031024)	acsbg2 (ENSDCDG00000031085)	rfx2 (ENSDCDG00000031793)	FCHO1 (ENSDCDG00000031842)	ENSDCDG00000031856	sft2d2a (ENSDCDG00000031859)
Otophysi	ANCESTRAL SPECIES	176				ENSGT00660000095605.e	ENSGT00940000163762.a.b	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb	ENSGT00940000157285.f	ENSGT00950000182993.B.a.d	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT00940000157954	ENSGT00390000007741.b	ENSGT00940000155863	ENSGT00940000159106	ENSGT00830000128380	ENSGT00390000000227	ENSGT00390000017846	ENSGT00940000155526.j	ENSGT00940000160673.h	ENSGT00940000155526.i.b	ENSGT00390000008686.d.a	ENSGT00950000182984.b.a.b.f.d
Characiphysae	ANCESTRAL SPECIES	3				ENSGT00940000163762.a.b.b	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb.b	ENSGT00940000154930.eb.a.a	ENSGT00940000157285.f	ENSGT00950000182993.B.a.d	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT00940000157954	ENSGT00390000007741.b	ENSGT00940000155863	ENSGT00940000159106	ENSGT00390000000227	ENSGT00940000164444.a	ENSGT00950000182953.A	ENSGT00950000182882.A.b.b.e	ENSGT00390000016940.c.b.a	ENSGT00940000155522.g.a	ENSGT00940000154095.b.b.a.b	ENSGT00940000167284
Characiphysae_b	ANCESTRAL SPECIES	11					ENSGT00940000163762.a.b.b	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb.b	ENSGT00940000157285.f	ENSGT00950000182993.B.a.d	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT00940000157954	ENSGT00390000007741.b	ENSGT00940000159106	ENSGT00390000000227	ENSGT00940000164444.a	ENSGT00950000182953.A	ENSGT00950000182882.A.b.b.e	ENSGT00390000016940.c.b.a	ENSGT00940000155522.g.a	ENSGT00940000154095.b.b.a.b	ENSGT00940000167284	ENSGT00950000183165.b.a.e.b.d.a.b
Characoidei	ANCESTRAL SPECIES	1					ENSGT00940000163762.a.b.a.b	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb.b	ENSGT00940000157285.f	ENSGT00950000182993.B.a.d	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT00940000157954	ENSGT00390000007741.b	ENSGT00940000159106	ENSGT00390000000227	ENSGT00940000164444.a	ENSGT00950000182953.A	ENSGT00950000182882.A.b.b.e	ENSGT00390000016940.c.b.a	ENSGT00940000155522.g.a	ENSGT00940000154095.b.b.a.b	ENSGT00940000167284	ENSGT00950000183165.b.a.e.b.d.a.b
Red-bellied piranha	MODERN SPECIES	256												ENSPNAG00000005982	rad54l (ENSPNAG00000012483) #28	ENSPNAG00000012406 #27	uqcrh (ENSPNAG00000012383) #26	ENSPNAG00000002206 #22	ENSPNAG00000002193	dmbx1b (ENSPNAG00000012313) #19	ENSPNAG00000012286	klhl41b (ENSPNAG00000012219)	ppig (ENSPNAG00000002126)	phospho2 (ENSPNAG00000011730)	KLHL23 (ENSPNAG00000011723)	ssb (ENSPNAG00000011708)	ENSPNAG00000011693	gad1b (ENSPNAG00000011682)	gorasp2 (ENSPNAG00000001846)	tlk1b (ENSPNAG00000011605)	ENSPNAG00000011503	ENSPNAG00000011431	EPHX4 (ENSPNAG00000011389)
Mexicana tetra	MODERN SPECIES	4	ENSAMXG00000039606	APCDD1L (ENSAMXG00000039527)	pbx1b (ENSAMXG00000013040)	med8 (ENSAMXG00000013038)	SZT2 (ENSAMXG00000012962)	hyi (ENSAMXG00000029639)	ENSAMXG00000037256	krt8 (ENSAMXG00000025655)	ptprfa (ENSAMXG00000012859)	ENSAMXG00000012836	st3gal3a (ENSAMXG00000033515)	ENSAMXG00000035938	rad54l (ENSAMXG00000012777) #28	ENSAMXG00000012759 #27	uqcrh (ENSAMXG00000012740) #26	ENSAMXG00000012724 #22	dmbx1b (ENSAMXG00000012711) #19	ENSAMXG00000012679	klhl41b (ENSAMXG00000012650)	ppig (ENSAMXG00000012632)	phospho2 (ENSAMXG00000025653)	KLHL23 (ENSAMXG00000039438)	ssb (ENSAMXG00000012606)	erich2 (ENSAMXG00000012599)	gad1b (ENSAMXG00000042622)	gorasp2 (ENSAMXG00000012557)	tlk1b (ENSAMXG00000012544)	ENSAMXG00000012530	slc25a12 (ENSAMXG00000012512)	unc50 (ENSAMXG00000012502)	SEMA5B (ENSAMXG00000012486)
Electric eel	MODERN SPECIES	30																ENSEEEG00000005038 #22	dmbx1b (ENSEEEG00000005029) #19	ENSEEEG00000005002	klhl41b (ENSEEEG00000004997)	ppig (ENSEEEG00000004993)	phospho2 (ENSEEEG00000004987)	ssb (ENSEEEG00000004982)	ENSEEEG00000004978	GAD1 (ENSEEEG00000004964)	gad1b (ENSEEEG00000004961)	gorasp2 (ENSEEEG00000004956)	tlk1b (ENSEEEG00000003939)	ENSEEEG00000003916	slc25a12 (ENSEEEG00000003399)	unc50 (ENSEEEG00000003390)	SEMA5B (ENSEEEG00000003388)
Channel catfish	DUPLICATION
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	2	uroc1 (ENSIPUG00000022941)	sec61a1 (ENSIPUG00000022923)	tatdn2 (ENSIPUG00000022911)	ghrl (ENSIPUG00000022902)	ip6k2b (ENSIPUG00000022900)	ENSIPUG00000022890	ENSIPUG00000022881	ttll3 (ENSIPUG00000022873)	SLC4A8 (ENSIPUG00000022836)	ENSIPUG00000022821	ccdc174 (ENSIPUG00000022811)	ghrl (ENSIPUG00000022801)	vhl (ENSIPUG00000022798)	crbn (ENSIPUG00000022774)	ENSIPUG00000022772	ENSIPUG00000022754 #22	dmbx1b (ENSIPUG00000022749) #19	ENSIPUG00000022747	hes1 (ENSIPUG00000022742)	opa1 (ENSIPUG00000022672)	ENSIPUG00000022661	tmem45a (ENSIPUG00000022656)	SFT2D2 (ENSIPUG00000022648)	chd1l (ENSIPUG00000022617)	ENSIPUG00000022605	negr1 (ENSIPUG00000022594)	zranb2 (ENSIPUG00000022583)	ptger3 (ENSIPUG00000022578)	cth (ENSIPUG00000022558)	nit2 (ENSIPUG00000022547)	gtpbp6 (ENSIPUG00000022531)
Channel catfish	MODERN SPECIES	163																ENSIPUG00000009078 #22
Channel catfish	MODERN SPECIES	2	ENSIPUG00000016409	ddi2 (ENSIPUG00000016343)	prkcda (ENSIPUG00000016193)	ENSIPUG00000016146	QCR6 (ENSIPUG00000016124) #26	lrrc41 (ENSIPUG00000016109) #27	rad54l (ENSIPUG00000015999) #28	artn (ENSIPUG00000015987)	st3gal3 (ENSIPUG00000015857)	ENSIPUG00000015827	ENSIPUG00000015805	ptprf (ENSIPUG00000015407)	hyi (ENSIPUG00000015311)	SZT2 (ENSIPUG00000015204)	ENSIPUG00000015182	ENSIPUG00000015114 #22	im:7152348 (ENSIPUG00000015096)	rab6b (ENSIPUG00000015058)	Slco2a1 (ENSIPUG00000014975)	ryk (ENSIPUG00000014887)	SNED1 (ENSIPUG00000014673)	ENSIPUG00000014599	klhl30 (ENSIPUG00000014581)	espnl (ENSIPUG00000014565)	scly (ENSIPUG00000014542)	KIF1A (ENSIPUG00000013847)	zgc:103559 (ENSIPUG00000013773)	AGXT (ENSIPUG00000013743)	dtymk (ENSIPUG00000013714)	atg4b (ENSIPUG00000013600)	bok (ENSIPUG00000013579)
Cyprinoidei	ANCESTRAL SPECIES	58	ENSGT00390000001562	ENSGT00940000157032.c.b	ENSGT00950000183019.f.b.a	ENSGT00660000095605.e	ENSGT00940000163762.a.b	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb	ENSGT00940000157285.f	ENSGT00950000182993.B.a.d	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT00940000157954	ENSGT00390000007741.b	ENSGT00830000128380	ENSGT00940000160673.h	ENSGT00390000017846	ENSGT00940000155526.i.b	ENSGT00390000008686.d.a	ENSGT00950000182984.b.a.b.f.d	ENSGT00940000155442.o.f	ENSGT00940000155963.e.d	ENSGT00390000018553	ENSGT00940000156712.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	564																ENSGT00940000163316.i #22	ENSGT00940000155505.a.b.b #19	ENSGT00940000163195.B.a.b	ENSGT00940000158859.f.b	ENSGT00940000157954.j	ENSGT00390000007741.b.c.a	ENSGT00830000128380.mb	ENSGT00940000160673.h.a	ENSGT00390000017846	ENSGT00940000155526.i.b.d.b	ENSGT00390000008686.d.a.d.b	ENSGT00950000182984.b.a.b.f.d.b	ENSGT00940000155442.o.f.b	ENSGT00940000155963.e.d.a	ENSGT00390000018553.b	ENSGT00940000156712.a.a
Cyprininae_a	ANCESTRAL SPECIES	30																ENSGT00940000163316.i #22	ENSGT00940000155505.a.b.b #19	ENSGT00940000163195.B.a.b	ENSGT00940000158859.f.b	ENSGT00940000157954.j	ENSGT00390000007741.b.c.a	ENSGT00830000128380.mb	ENSGT00940000160673.h.a	ENSGT00390000017846	ENSGT00940000155526.i.b.d.b	ENSGT00390000008686.d.a.d.b	ENSGT00950000182984.b.a.b.f.d.b	ENSGT00940000155442.o.f.b	ENSGT00940000155963.e.d.a	ENSGT00390000018553.b	ENSGT00940000156712.a.a
Common carp reference	MODERN SPECIES	10	ENSCCRG00000013411	prkag1 (ENSCCRG00000010542)	ENSCCRG00000010524	pbx1b (ENSCCRG00000051773)	ENSCCRG00000066710	med8 (ENSCCRG00000051770)	ENSCCRG00000041129	ENSCCRG00000076885	hyi (ENSCCRG00000058018)	ptprfa (ENSCCRG00000029658)	ENSCCRG00000037304	st3gal3a (ENSCCRG00000042619)	ENSCCRG00000056382	rad54l (ENSCCRG00000029826) #28	uqcrh (ENSCCRG00000029806) #26	ENSCCRG00000078772 #22	dmbx1b (ENSCCRG00000002649) #19	ENSCCRG00000030514	klhl41b (ENSCCRG00000054047)	ENSCCRG00000074103	ppig (ENSCCRG00000056297)	phospho2 (ENSCCRG00000054121)	ssb (ENSCCRG00000019146)	ENSCCRG00000018035	erich2 (ENSCCRG00000060518)	gad1b (ENSCCRG00000027295)	gorasp2 (ENSCCRG00000027299)	tlk1b (ENSCCRG00000027305)	ENSCCRG00000011453	slc25a12 (ENSCCRG00000011534)	unc50 (ENSCCRG00000026390)
Golden-line barbel	MODERN SPECIES	42	VSTM2L (ENSSGRG00000024322)	tgm5l (ENSSGRG00000024323)	ACVR1B (ENSSGRG00000024331)	prkag1 (ENSSGRG00000024333)	pbx1b (ENSSGRG00000024341)	SZT2 (ENSSGRG00000024364)	hyi (ENSSGRG00000024375)	ptprfa (ENSSGRG00000024620)	ENSSGRG00000031923	st3gal3a (ENSSGRG00000031937)	ENSSGRG00000032097	rad54l (ENSSGRG00000032099) #28	ENSSGRG00000032101 #27	uqcrh (ENSSGRG00000032102) #26	uqcrh (ENSSGRG00000032103) #26	ENSSGRG00000032104 #22	dmbx1b (ENSSGRG00000032108) #19	ENSSGRG00000032109	klhl41b (ENSSGRG00000032110)	ppig (ENSSGRG00000032111)	phospho2 (ENSSGRG00000032113)	ssb (ENSSGRG00000032114)	ENSSGRG00000032192	gad1b (ENSSGRG00000032195)	gorasp2 (ENSSGRG00000032292)	tlk1b (ENSSGRG00000032298)	DYNC1I2 (ENSSGRG00000032962)	slc25a12 (ENSSGRG00000034797)	unc50 (ENSSGRG00000037232)	SEMA5B (ENSSGRG00000037241)	ENSSGRG00000037244
Goldfish	MODERN SPECIES	46	zgc:113227 (ENSCARG00000022437)	tgm5l (ENSCARG00000022432)	ACVR1B (ENSCARG00000022063)	prkag1 (ENSCARG00000021206)	ENSCARG00000021188	ENSCARG00000021175	pbx1b (ENSCARG00000021128)	med8 (ENSCARG00000021072)	hyi (ENSCARG00000021035)	ptprfa (ENSCARG00000010112)	ENSCARG00000009698	st3gal3a (ENSCARG00000009229)	ENSCARG00000009211	rad54l (ENSCARG00000009189) #28	uqcrh (ENSCARG00000009179) #26	ENSCARG00000009150 #22	dmbx1b (ENSCARG00000009139) #19	ENSCARG00000009047	klhl41b (ENSCARG00000009021)	ppig (ENSCARG00000009008)	phospho2 (ENSCARG00000009003)	ssb (ENSCARG00000008981)	ENSCARG00000008972	erich2 (ENSCARG00000008966)	GAD67 (ENSCARG00000005790)	gorasp2 (ENSCARG00000005632)	tlk1b (ENSCARG00000004988)	ENSCARG00000003448	slc25a12 (ENSCARG00000002546)	unc50 (ENSCARG00000002465)	SEMA5B (ENSCARG00000002118)
Cyprininae	ANCESTRAL SPECIES	261	ENSGT00950000183019.f.b.a.d	ENSGT00660000095605.e	ENSGT00940000163762.a.b.c	ENSGT00940000163762.a.b.d	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b.a	ENSGT00940000154930.eb.d	ENSGT00940000157285.f.b	ENSGT00950000182993.B.a.d.f	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.gb.j #26	ENSGT00390000003860.gb.i #26	ENSGT00940000163316.j #22	ENSGT00940000155505.a.b.a #19	ENSGT00940000163195.B.a.a	ENSGT00940000158859.f.a	ENSGT00940000157954.i	ENSGT00390000007741.b.c.b	ENSGT00830000128380.nb	ENSGT00940000160673.h.b	ENSGT00940000155526.i.b.d.a	ENSGT00390000008686.d.a.d.a	ENSGT00950000182984.b.a.b.f.d.a	ENSGT00940000155442.o.f.a	ENSGT00940000155963.e.d.b	ENSGT00390000018553.a	ENSGT00940000156712.a.b	ENSGT00940000158202.v
Goldfish	MODERN SPECIES	24	pbx1b (ENSCARG00000029351)	prkag1 (ENSCARG00000027910)	ACVR1B (ENSCARG00000027792)	pxmp4 (ENSCARG00000027772)	tgm5l (ENSCARG00000027723)	tgm5l (ENSCARG00000027704)	VSTM2L (ENSCARG00000027689)	quo (ENSCARG00000027576)	DLGAP4 (ENSCARG00000027551)	ptprfa (ENSCARG00000021648)	ENSCARG00000020428	st3gal3a (ENSCARG00000020352)	ENSCARG00000020333	ENSCARG00000020306 #27	uqcrh (ENSCARG00000020279) #26	ENSCARG00000020158 #22	dmbx1b (ENSCARG00000020134) #19	ENSCARG00000020051	klhl41b (ENSCARG00000020034)	ppig (ENSCARG00000020018)	phospho2 (ENSCARG00000020014)	ssb (ENSCARG00000019989)	ENSCARG00000019983	gad1b (ENSCARG00000019789)	gorasp2 (ENSCARG00000019410)	tlk1b (ENSCARG00000016418)	slc25a12 (ENSCARG00000015643)	unc50 (ENSCARG00000015620)	SEMA5B (ENSCARG00000015480)	ENSCARG00000015435	ENSCARG00000015420
Cyprininae_a	ANCESTRAL SPECIES	13	ENSGT01050000244866.D.b.a.b	ENSGT00390000001562.j	ENSGT00950000183019.f.b.a.c	ENSGT00940000163762.a.b.d	ENSGT00390000011838	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b.a	ENSGT00940000154930.eb.d	ENSGT00940000157285.f.b	ENSGT00950000182993.B.a.d.f	ENSGT00940000156897 #28	ENSGT00390000015908 #27	ENSGT00390000003860.gb.j #26	ENSGT00390000003860.gb.i #26	ENSGT00940000163316.j #22	ENSGT00940000155505.a.b.a #19	ENSGT00940000163195.B.a.a	ENSGT00940000158859.f.a	ENSGT00940000157954.i	ENSGT00390000007741.b.c.b	ENSGT00830000128380.nb	ENSGT00940000160673.h.b	ENSGT00940000155526.i.b.d.a	ENSGT00390000008686.d.a.d.a	ENSGT00950000182984.b.a.b.f.d.a	ENSGT00940000155442.o.f.a	ENSGT00940000155963.e.d.b	ENSGT00390000018553.a	ENSGT00940000156712.a.b	ENSGT00940000158202.v
Common carp reference	MODERN SPECIES	16	tgm5l (ENSCCRG00000039293)	tgm5l (ENSCCRG00000012076)	pxmp4 (ENSCCRG00000039266)	ENSCCRG00000062170	prkag1 (ENSCCRG00000013398)	pbx1b (ENSCCRG00000037065)	med8 (ENSCCRG00000037057)	SZT2 (ENSCCRG00000068222)	hyi (ENSCCRG00000064805)	ptprfa (ENSCCRG00000037101)	ENSCCRG00000037117	ENSCCRG00000056735	st3gal3a (ENSCCRG00000060413)	ENSCCRG00000064580	ENSCCRG00000074592 #27	ENSCCRG00000029812 #22	dmbx1b (ENSCCRG00000029817) #19	ENSCCRG00000008061	klhl41b (ENSCCRG00000008056)	ENSCCRG00000065596	ppig (ENSCCRG00000067446)	ENSCCRG00000057533	phospho2 (ENSCCRG00000074179)	ssb (ENSCCRG00000030562)	erich2 (ENSCCRG00000078127)	gad1b (ENSCCRG00000018203)	gorasp2 (ENSCCRG00000018638)	tlk1b (ENSCCRG00000018676)	ENSCCRG00000018773	slc25a12 (ENSCCRG00000018955)	ENSCCRG00000080244
Golden-line barbel	MODERN SPECIES	516	quo (ENSSGRG00000008649)	VSTM2L (ENSSGRG00000008709)	tgm5l (ENSSGRG00000008710)	ACVR1B (ENSSGRG00000008711)	prkag1 (ENSSGRG00000008744)	ENSSGRG00000009990	pbx1b (ENSSGRG00000009995)	med8 (ENSSGRG00000010110)	SZT2 (ENSSGRG00000010112)	ENSSGRG00000010113	ptprfa (ENSSGRG00000010292)	ENSSGRG00000019615	st3gal3a (ENSSGRG00000020469)	ENSSGRG00000020942	uqcrh (ENSSGRG00000020943) #26	ENSSGRG00000020945 #22	dmbx1b (ENSSGRG00000020946) #19
Zebrafish	MODERN SPECIES	21	tgm5l (ENSDARG00000098837)	pxmp4 (ENSDARG00000114885)	ACVR1B (ENSDARG00000052142)	prkag1 (ENSDARG00000003818)	pbx1b (ENSDARG00000101131)	med8 (ENSDARG00000114425)	ENSDARG00000100203	hyi (ENSDARG00000030166)	ptprfa (ENSDARG00000103479)	ENSDARG00000018782	st3gal3a (ENSDARG00000015374)	ENSDARG00000096252	rad54l (ENSDARG00000018623) #28	ENSDARG00000096306 #27	uqcrh (ENSDARG00000059128) #26	faah (ENSDARG00000077764) #22	dmbx1b (ENSDARG00000002510) #19	ENSDARG00000100781	klhl41b (ENSDARG00000006757)	ppig (ENSDARG00000044431)	phospho2 (ENSDARG00000102202)	ssb (ENSDARG00000029252)	ENSDARG00000005846	erich2 (ENSDARG00000107534)	gad1b (ENSDARG00000027419)	gorasp2 (ENSDARG00000015126)	tlk1b (ENSDARG00000100715)	DYNC1I2 (ENSDARG00000103195)	slc25a12 (ENSDARG00000102362)	unc50 (ENSDARG00000040455)	SEMA5B (ENSDARG00000075648)
Euteleosteomorpha	ANCESTRAL SPECIES	71												ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000166653	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Acanthomorphata	ANCESTRAL SPECIES	54											ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000166653	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Euacanthomorphacea	ANCESTRAL SPECIES	9	ENSGT00940000160168.b.b	ENSGT00390000002738.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000166653	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00940000160168.b.b	ENSGT00390000002738.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000166653	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	469	ENSHCOG00000019229	si:dkey-51e6.1 (ENSHCOG00000019214)	ENSHCOG00000019203	lmx1a (ENSHCOG00000019184)	ENSHCOG00000019163	atf6 (ENSHCOG00000019112)	olfml2ba (ENSHCOG00000019099)	ENSHCOG00000019024	ENSHCOG00000019018	XCR1 (ENSHCOG00000019008)	FYCO1 (ENSHCOG00000019002)	GHRHR (ENSHCOG00000018993)	ENSHCOG00000018958	ENSHCOG00000018940	ENSHCOG00000018926 #22	ENSHCOG00000000498 #22	uqcrh (ENSHCOG00000018806) #26	dmbx1b (ENSHCOG00000018797) #19	mknk1 (ENSHCOG00000018767) #16	mob3c (ENSHCOG00000018737) #15	elovl1b (ENSHCOG00000018730)	ENSHCOG00000018715	ptgfr (ENSHCOG00000000797)	btf3l4 (ENSHCOG00000018651)	st6galnac5b (ENSHCOG00000000626)	SLC44A5 (ENSHCOG00000018587)	hook1 (ENSHCOG00000018549)	ENSHCOG00000018512	IPO13 (ENSHCOG00000018408)	ENSHCOG00000018320	mmachc (ENSHCOG00000018306)
Tiger tail seahorse	MODERN SPECIES	469	ENSHCOG00000019243	ENSHCOG00000019229	si:dkey-51e6.1 (ENSHCOG00000019214)	ENSHCOG00000019203	lmx1a (ENSHCOG00000019184)	ENSHCOG00000019163	atf6 (ENSHCOG00000019112)	olfml2ba (ENSHCOG00000019099)	ENSHCOG00000019024	ENSHCOG00000019018	XCR1 (ENSHCOG00000019008)	FYCO1 (ENSHCOG00000019002)	GHRHR (ENSHCOG00000018993)	ENSHCOG00000018958	ENSHCOG00000018940	ENSHCOG00000018926 #22	ENSHCOG00000000498 #22	uqcrh (ENSHCOG00000018806) #26	dmbx1b (ENSHCOG00000018797) #19	mknk1 (ENSHCOG00000018767) #16	mob3c (ENSHCOG00000018737) #15	elovl1b (ENSHCOG00000018730)	ENSHCOG00000018715	ptgfr (ENSHCOG00000000797)	btf3l4 (ENSHCOG00000018651)	st6galnac5b (ENSHCOG00000000626)	SLC44A5 (ENSHCOG00000018587)	hook1 (ENSHCOG00000018549)	ENSHCOG00000018512	IPO13 (ENSHCOG00000018408)	ENSHCOG00000018320
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000181277	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00600000085557	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000166653	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000164178	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT01030000235480	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00940000175064
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000164178	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000178237	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT01030000235480	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00600000085557	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000178237	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00600000085557	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Mangrove rivulus	MODERN SPECIES	8	ENSKMAG00000000858	si:dkey-51e6.1 (ENSKMAG00000000972)	lmx1a (ENSKMAG00000000999)	ENSKMAG00000001090	atf6 (ENSKMAG00000001127)	olfml2ba (ENSKMAG00000001218)	ENSKMAG00000001226	ENSKMAG00000001236	ENSKMAG00000001260	XCR1 (ENSKMAG00000001274)	FYCO1 (ENSKMAG00000001284)	GHRHR (ENSKMAG00000001309)	ENSKMAG00000001406	ENSKMAG00000001421	uqcrh (ENSKMAG00000001510) #26	ENSKMAG00000001530 #22	dmbx1b (ENSKMAG00000001542) #19	TMEM275 (ENSKMAG00000001580) #18	mknk1 (ENSKMAG00000001598) #16	mob3c (ENSKMAG00000001649) #15	elovl1b (ENSKMAG00000001660)	ENSKMAG00000001698	btf3l4 (ENSKMAG00000001767)	ptgfr (ENSKMAG00000001783)	st6galnac5b (ENSKMAG00000001796)	SLC44A5 (ENSKMAG00000001808)	ENSKMAG00000001834	ENSKMAG00000001854	tnni3k (ENSKMAG00000001998)	fpgt (ENSKMAG00000002074)	acot11b (ENSKMAG00000002080)
Turquoise killifish	MODERN SPECIES	1626	OLA.11839 (ENSNFUG00015024996)	SELE (ENSNFUG00015024999)	ENSNFUG00015025001	ENSNFUG00015025004	ENSNFUG00015025021	atf6 (ENSNFUG00015025065)	olfml2ba (ENSNFUG00015025080)	TOR1AIP2 (ENSNFUG00015025087)	ENSNFUG00015025088	XCR1 (ENSNFUG00015025091)	FYCO1 (ENSNFUG00015025095)	ENSNFUG00015025106	ENSNFUG00015025111	ENSNFUG00015025121	uqcrh (ENSNFUG00015025127) #26	FAAH (ENSNFUG00015025129) #22	dmbx1b (ENSNFUG00015025130) #19	mknk1 (ENSNFUG00015025152) #16	mob3c (ENSNFUG00015025174) #15	ELOVL1B (ENSNFUG00015025176)	ENSNFUG00015014073	ENSNFUG00015014110	ptgfr (ENSNFUG00015014143)	ST6GALNAC5B (ENSNFUG00015014173)	ENSNFUG00015014242	ENSNFUG00015014744	C8H1ORF173 (ENSNFUG00015014840)	FPGT (ENSNFUG00015015137)	acot11b (ENSNFUG00015015145)	SSBP3B (ENSNFUG00015015185)	dio1 (ENSNFUG00015015230)
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT00940000164633	ENSGT00950000183165.b.b.b.b.a.b	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000157704.b	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000178237	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00940000164633	ENSGT00950000183165.b.b.b.b.a.b	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000157704.b	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000178237	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Poecilia	ANCESTRAL SPECIES	1	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00950000183165.b.b.b.b.a.b	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000178237	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
NAME_6	ANCESTRAL SPECIES	61	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00950000183165.b.b.b.b.a.b	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000178237	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Amazon molly	MODERN SPECIES	349	si:dkey-97o5.1 (ENSPFOG00000018491)	si:dkey-51e6.1 (ENSPFOG00000018483)	sele (ENSPFOG00000018460)	ENSPFOG00000018453	lmx1a (ENSPFOG00000018450)	ENSPFOG00000018435	atf6 (ENSPFOG00000018418)	olfml2ba (ENSPFOG00000018409)	ENSPFOG00000020794	XCR1 (ENSPFOG00000020793)	FYCO1 (ENSPFOG00000018387)	GHRHR (ENSPFOG00000018371)	ENSPFOG00000018361	ENSPFOG00000018339	uqcrh (ENSPFOG00000018328) #26	ENSPFOG00000018280 #22	dmbx1b (ENSPFOG00000018268) #19	TMEM275 (ENSPFOG00000020792) #18	mknk1 (ENSPFOG00000018228) #16	mob3c (ENSPFOG00000018215) #15	elovl1b (ENSPFOG00000018196)	ENSPFOG00000018171	btf3l4 (ENSPFOG00000018164)	ptgfr (ENSPFOG00000018159)	st6galnac5b (ENSPFOG00000018155)	ENSPFOG00000018153	SLC44A5 (ENSPFOG00000018107)	ENSPFOG00000018085	erich3 (ENSPFOG00000024120)	tnni3k (ENSPFOG00000018030)	fpgt (ENSPFOG00000022673)
Sailfin molly	MODERN SPECIES	64	ENSPLAG00000016260	ENSPLAG00000016296	lmx1a (ENSPLAG00000016380)	ENSPLAG00000016970	atf6 (ENSPLAG00000017034)	OLFML2B (ENSPLAG00000017055)	ENSPLAG00000017073	ENSPLAG00000017083	ENSPLAG00000017088	XCR1 (ENSPLAG00000017095)	FYCO1 (ENSPLAG00000017105)	GHRHR (ENSPLAG00000017116)	ENSPLAG00000017132	ENSPLAG00000017151	uqcrh (ENSPLAG00000017161) #26	ENSPLAG00000017266 #22	dmbx1b (ENSPLAG00000017286) #19	TMEM275 (ENSPLAG00000017291) #18	mknk1 (ENSPLAG00000017328) #16	mob3c (ENSPLAG00000017339) #15	elovl1b (ENSPLAG00000017357)	ENSPLAG00000017360	ENSPLAG00000017412	btf3l4 (ENSPLAG00000017441)	ptgfr (ENSPLAG00000017453)	st6galnac5b (ENSPLAG00000017474)	SLC44A5 (ENSPLAG00000017501)	ENSPLAG00000017542	ENSPLAG00000017564	tnni3k (ENSPLAG00000017619)	fpgt (ENSPLAG00000017637)
Guppy	MODERN SPECIES	456	ENSPREG00000011003	ENSPREG00000010958	ENSPREG00000010947	ENSPREG00000010922	ENSPREG00000010895	atf6 (ENSPREG00000010860)	olfml2ba (ENSPREG00000010843)	ENSPREG00000010820	ENSPREG00000010814	XCR1 (ENSPREG00000010803)	FYCO1 (ENSPREG00000010782)	GHRHR (ENSPREG00000010762)	ENSPREG00000010714	ENSPREG00000010676	uqcrh (ENSPREG00000010618) #26	ENSPREG00000010600 #22	dmbx1b (ENSPREG00000010571) #19	TMEM275 (ENSPREG00000010560) #18	mknk1 (ENSPREG00000010545) #16	mob3c (ENSPREG00000010532) #15	elovl1b (ENSPREG00000010470)	ENSPREG00000010426	ENSPREG00000010412	btf3l4 (ENSPREG00000010396)	ptgfr (ENSPREG00000010385)	st6galnac5b (ENSPREG00000010375)	ENSPREG00000010364	SLC44A5 (ENSPREG00000010302)	ENSPREG00000010250	ENSPREG00000010218	tnni3k (ENSPREG00000010127)
Platyfish	MODERN SPECIES	23	ENSXMAG00000023886	ENSXMAG00000018250	ENSXMAG00000026904	ENSXMAG00000018259	atf6 (ENSXMAG00000013231)	olfml2ba (ENSXMAG00000013228)	ENSXMAG00000013227	ENSXMAG00000026853	ENSXMAG00000026575	XCR1 (ENSXMAG00000013226)	FYCO1 (ENSXMAG00000013225)	GHRHR (ENSXMAG00000013222)	ENSXMAG00000013221	ENSXMAG00000013217	uqcrh (ENSXMAG00000013216) #26	ENSXMAG00000013205 #22	dmbx1b (ENSXMAG00000013199) #19	TMEM275 (ENSXMAG00000024551) #18	mknk1 (ENSXMAG00000013185) #16	mob3c (ENSXMAG00000013182) #15	elovl1b (ENSXMAG00000013172)	ENSXMAG00000013168	ENSXMAG00000028719	btf3l4 (ENSXMAG00000013165)	ptgfr (ENSXMAG00000013163)	st6galnac5b (ENSXMAG00000013162)	SLC44A5 (ENSXMAG00000013143)	ENSXMAG00000013139	erich3 (ENSXMAG00000013136)	tnni3k (ENSXMAG00000013115)	fpgt (ENSXMAG00000013110)
NAME_4	ANCESTRAL SPECIES	17	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00950000183165.b.b.b.b.a.b	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Sheepshead minnow	MODERN SPECIES	157	slc25a28 (ENSCVAG00000002979)	ENTPD7 (ENSCVAG00000002999)	ENSCVAG00000003007	atpv0e2 (ENSCVAG00000003019)	ENSCVAG00000003029	ENSCVAG00000003039	ENSCVAG00000000742	ENSCVAG00000003059	ENSCVAG00000003076	XCR1 (ENSCVAG00000003080)	ENSCVAG00000003099	ENSCVAG00000003149	ENSCVAG00000003169	ENSCVAG00000000101	uqcrh (ENSCVAG00000000103) #26	ENSCVAG00000003233 #22	TMEM275 (ENSCVAG00000003238) #18	mknk1 (ENSCVAG00000003269) #16	mob3c (ENSCVAG00000003281) #15	elovl1b (ENSCVAG00000003292)	ENSCVAG00000003312	btf3l4 (ENSCVAG00000003316)	ptgfr (ENSCVAG00000003328)	st6galnac5b (ENSCVAG00000003332)	ENSCVAG00000003405	ENSCVAG00000003421	ENSCVAG00000003429	tnni3k (ENSCVAG00000003476)	fpgt (ENSCVAG00000003485)	acot11b (ENSCVAG00000003515)	ssbp3b (ENSCVAG00000003583)
Mummichog	MODERN SPECIES	2215	ENSFHEG00000022668	ENSFHEG00000022694	ENSFHEG00000022710	ENSFHEG00000022725	atf6 (ENSFHEG00000022771)	olfml2ba (ENSFHEG00000022791)	ENSFHEG00000022801	ENSFHEG00000022805	XCR1 (ENSFHEG00000022816)	FYCO1 (ENSFHEG00000022827)	GHRHR (ENSFHEG00000022852)	ENSFHEG00000022866	ENSFHEG00000022879	ENSFHEG00000022891	uqcrh (ENSFHEG00000022907) #26	ENSFHEG00000022941 #22	dmbx1b (ENSFHEG00000022955) #19	TMEM275 (ENSFHEG00000022963) #18	mknk1 (ENSFHEG00000023011) #16	mob3c (ENSFHEG00000023035) #15	elovl1b (ENSFHEG00000023085)	ENSFHEG00000023141	btf3l4 (ENSFHEG00000023175)	ptgfr (ENSFHEG00000001538)	st6galnac5b (ENSFHEG00000001543)	ENSFHEG00000001551	ENSFHEG00000001558	erich3 (ENSFHEG00000001563)	tnni3k (ENSFHEG00000001588)	fpgt (ENSFHEG00000001594)	acot11b (ENSFHEG00000001613)
Oryzias	ANCESTRAL SPECIES	5	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000164178	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000178237	ENSGT00940000154290.a.f	ENSGT00940000156012	ENSGT00940000155854.b.a.a	ENSGT00940000166091	ENSGT00950000182920.b.a.a	ENSGT00940000159170.c	ENSGT00940000164939.a.a	ENSGT00940000154737.c.h	ENSGT00940000160191
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000164178	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000156012	ENSGT00940000155854.b.a.a	ENSGT00940000166091	ENSGT00950000182920.b.a.a	ENSGT00940000159170.c	ENSGT00940000164939.a.a	ENSGT00940000154737.c.h	ENSGT00940000160191	ENSGT00940000166922
Indian medaka	MODERN SPECIES	13	SELE (ENSOMEG00000007531)	sele (ENSOMEG00000007463)	lmx1a (ENSOMEG00000007339)	ENSOMEG00000007311	atf6 (ENSOMEG00000007240)	olfml2ba (ENSOMEG00000007088)	ENSOMEG00000007067	ENSOMEG00000007039	ENSOMEG00000007019	XCR1 (ENSOMEG00000007000)	FYCO1 (ENSOMEG00000006994)	ENSOMEG00000006941	ENSOMEG00000006856	cyp2v1 (ENSOMEG00000006834)	uqcrh (ENSOMEG00000006791) #26	ENSOMEG00000006767 #22	dmbx1b (ENSOMEG00000006723) #19	TMEM275 (ENSOMEG00000006648) #18	mknk1 (ENSOMEG00000006631) #16	mob3c (ENSOMEG00000006573) #15	elovl1b (ENSOMEG00000006546)	ENSOMEG00000006481	rgl1 (ENSOMEG00000006432)	ABHD17A (ENSOMEG00000006377)	zgc:77486 (ENSOMEG00000006355)	plin3 (ENSOMEG00000006316)	SEMA6B (ENSOMEG00000006296)	chd1l (ENSOMEG00000006109)	ENSOMEG00000005990	wwc3 (ENSOMEG00000005971)	cldn33b (ENSOMEG00000005934)
Javanese ricefish	MODERN SPECIES	18	ENSOJAG00000012017	lmx1a (ENSOJAG00000012036)	ENSOJAG00000012060	atf6 (ENSOJAG00000012204)	olfml2ba (ENSOJAG00000012233)	ENSOJAG00000012242	ENSOJAG00000012250	ENSOJAG00000012262	XCR1 (ENSOJAG00000012273)	FYCO1 (ENSOJAG00000012288)	ENSOJAG00000012621	ENSOJAG00000012813	ENSOJAG00000012841	ENSOJAG00000012852	uqcrh (ENSOJAG00000012867) #26	ENSOJAG00000012877 #22	DMBX1 (ENSOJAG00000012952) #19	mknk1 (ENSOJAG00000013012) #16	mob3c (ENSOJAG00000013586) #15	elovl1b (ENSOJAG00000013603)	rgl1 (ENSOJAG00000003820)	ABHD17A (ENSOJAG00000004563)	zgc:77486 (ENSOJAG00000004618)	plin3 (ENSOJAG00000004630)	SEMA6B (ENSOJAG00000004663)	rorca (ENSOJAG00000004852)	sh3gl1b (ENSOJAG00000004999)	mpnd (ENSOJAG00000005037)	MUTYH (ENSOJAG00000005069)	ENSOJAG00000005122	ENSOJAG00000005213
Oryzias_a	ANCESTRAL SPECIES	24	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000164178	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000178237	ENSGT00940000154290.a.f	ENSGT00940000156012	ENSGT00940000155854.b.a.a	ENSGT00940000166091	ENSGT00950000182920.b.a.a	ENSGT00940000159170.c	ENSGT00940000164897.a.a	ENSGT00390000005717.t	ENSGT00940000155212.ab.b
Japanese Medaka HdrR	MODERN SPECIES	18	selp (ENSORLG00000016698)	lmx1a (ENSORLG00000016714)	ENSORLG00000016690	atf6 (ENSORLG00000016676)	olfml2ba (ENSORLG00000016665)	ENSORLG00000016657	ENSORLG00000029154	ENSORLG00000027473	XCR1 (ENSORLG00000016652)	FYCO1 (ENSORLG00000016646)	GHRHR (ENSORLG00000016626)	ENSORLG00000016620	ENSORLG00000016613	uqcrh (ENSORLG00000016595) #26	dmbx1 (ENSORLG00000016578) #19	ENSORLG00000016589 #22	ENSORLG00000021907 #18	mknk1 (ENSORLG00000016569) #16	mob3c (ENSORLG00000016549) #15	elovl1b (ENSORLG00000016538)	ENSORLG00000027298	ENSORLG00000016510	rgl1 (ENSORLG00000016496)	ABHD17A (ENSORLG00000022840)	zgc:77486 (ENSORLG00000016444)	plin3 (ENSORLG00000016426)	ENSORLG00000016416	cldn33b (ENSORLG00000028513)	SHROOM2 (ENSORLG00000016397)	ENSORLG00000016385	RS1 (ENSORLG00000016370)
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT01030000235480	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Pomacentridae	ANCESTRAL SPECIES	14	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000179641	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT01030000235480	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Pomacentridae_A	ANCESTRAL SPECIES	48	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000179641	ENSGT00950000182879.a.b.a.b.a.a	ENSGT00950000182879.a.b.a.b.a.b	ENSGT00950000182879.a.b.a.a.a.g.b	ENSGT00950000182879.a.b.a.a.a.g.a.b	ENSGT00950000182879.a.b.a.a.a.g.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Amphiprion	DUPLICATION
Amphiprion	ANCESTRAL SPECIES	2															ENSGT00390000003860.gb #26	ENSGT00940000163316.m #22	ENSGT00940000163316.n #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Orange clownfish	MODERN SPECIES	11	ENSAPEG00000003807	alkal1 (ENSAPEG00000003823)	ENSAPEG00000003831	ENSAPEG00000003864	ENSAPEG00000003888	ENSAPEG00000003905	ENSAPEG00000003928	ENSAPEG00000003978	guk1b (ENSAPEG00000004101)	ENSAPEG00000004146	RNF220 (ENSAPEG00000004152)	dmap1 (ENSAPEG00000004218)	hnrnpm (ENSAPEG00000004257)	timm44 (ENSAPEG00000004296)	uqcrh (ENSAPEG00000004422) #26	ENSAPEG00000004434 #22	ENSAPEG00000004497 #22	ENSAPEG00000004600 #22	dmbx1b (ENSAPEG00000004730) #19	TMEM275 (ENSAPEG00000004751) #18	mknk1 (ENSAPEG00000004757) #16	mob3c (ENSAPEG00000004799) #15	elovl1b (ENSAPEG00000004823)	ENSAPEG00000004867	btf3l4 (ENSAPEG00000004919)	ptgfr (ENSAPEG00000004946)	st6galnac5b (ENSAPEG00000004968)	SLC44A5 (ENSAPEG00000004996)	ENSAPEG00000005007	erich3 (ENSAPEG00000005047)	tnni3k (ENSAPEG00000005112)
Clown anemonefish	MODERN SPECIES	2776															ENSAOCG00000005119 #22	ENSAOCG00000005088 #22	dmbx1b (ENSAOCG00000000210) #19
Amphiprion	ANCESTRAL SPECIES	2														ENSGT00390000003860.gb #26	ENSGT00940000163316.m #22	ENSGT00940000163316.n #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	11	ENSAPEG00000003831	ENSAPEG00000003864	ENSAPEG00000003888	ENSAPEG00000003905	ENSAPEG00000003928	ENSAPEG00000003978	guk1b (ENSAPEG00000004101)	ENSAPEG00000004146	RNF220 (ENSAPEG00000004152)	dmap1 (ENSAPEG00000004218)	hnrnpm (ENSAPEG00000004257)	timm44 (ENSAPEG00000004296)	uqcrh (ENSAPEG00000004422) #26	ENSAPEG00000004434 #22	ENSAPEG00000004497 #22	ENSAPEG00000004600 #22	dmbx1b (ENSAPEG00000004730) #19	TMEM275 (ENSAPEG00000004751) #18	mknk1 (ENSAPEG00000004757) #16	mob3c (ENSAPEG00000004799) #15	elovl1b (ENSAPEG00000004823)	ENSAPEG00000004867	btf3l4 (ENSAPEG00000004919)	ptgfr (ENSAPEG00000004946)	st6galnac5b (ENSAPEG00000004968)	SLC44A5 (ENSAPEG00000004996)	ENSAPEG00000005007	erich3 (ENSAPEG00000005047)	tnni3k (ENSAPEG00000005112)	fpgt (ENSAPEG00000005203)	acot11b (ENSAPEG00000005219)
Orange clownfish	MODERN SPECIES	11	alkal1 (ENSAPEG00000003823)	ENSAPEG00000003831	ENSAPEG00000003864	ENSAPEG00000003888	ENSAPEG00000003905	ENSAPEG00000003928	ENSAPEG00000003978	guk1b (ENSAPEG00000004101)	ENSAPEG00000004146	RNF220 (ENSAPEG00000004152)	dmap1 (ENSAPEG00000004218)	hnrnpm (ENSAPEG00000004257)	timm44 (ENSAPEG00000004296)	uqcrh (ENSAPEG00000004422) #26	ENSAPEG00000004434 #22	ENSAPEG00000004497 #22	ENSAPEG00000004600 #22	dmbx1b (ENSAPEG00000004730) #19	TMEM275 (ENSAPEG00000004751) #18	mknk1 (ENSAPEG00000004757) #16	mob3c (ENSAPEG00000004799) #15	elovl1b (ENSAPEG00000004823)	ENSAPEG00000004867	btf3l4 (ENSAPEG00000004919)	ptgfr (ENSAPEG00000004946)	st6galnac5b (ENSAPEG00000004968)	SLC44A5 (ENSAPEG00000004996)	ENSAPEG00000005007	erich3 (ENSAPEG00000005047)	tnni3k (ENSAPEG00000005112)	fpgt (ENSAPEG00000005203)
Clown anemonefish	MODERN SPECIES	2776																ENSAOCG00000005119 #22	ENSAOCG00000005088 #22	dmbx1b (ENSAOCG00000000210) #19
Spiny chromis	MODERN SPECIES	550	ENSAPOG00000001556	atf6 (ENSAPOG00000024456)	olfml2ba (ENSAPOG00000024434)	ENSAPOG00000024430	ENSAPOG00000024425	XCR1 (ENSAPOG00000024418)	FYCO1 (ENSAPOG00000024413)	GHRHR (ENSAPOG00000024388)	ENSAPOG00000024288	ENSAPOG00000024264	ENSAPOG00000024249	ENSAPOG00000024226	ENSAPOG00000024190	ENSAPOG00000024152	uqcrh (ENSAPOG00000024143) #26	ENSAPOG00000024124 #22
Bicolor damselfish	MODERN SPECIES	2263														ENSSPAG00000002725	uqcrh (ENSSPAG00000002757) #26	ENSSPAG00000002786 #22	dmbx1b (ENSSPAG00000002846) #19
Cichlidae	ANCESTRAL SPECIES	17	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Midas cichlid	DUPLICATION
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	1328															ENSACIG00000012676 #22	ENSACIG00000012638 #22
Midas cichlid	MODERN SPECIES	1328																ENSACIG00000012676 #22	ENSACIG00000012638 #22
Midas cichlid	MODERN SPECIES	551																ENSACIG00000012486 #22	dmbx1b (ENSACIG00000012592) #19	TMEM275 (ENSACIG00000012606) #18	mknk1 (ENSACIG00000012615) #16	mob3c (ENSACIG00000012652) #15	elovl1b (ENSACIG00000012664)	ENSACIG00000012689	ENSACIG00000012729	ptgfr (ENSACIG00000012742)	st6galnac5b (ENSACIG00000012751)	SLC44A5 (ENSACIG00000012760)	ENSACIG00000012805	erich3 (ENSACIG00000012819)	tnni3k (ENSACIG00000012847)	fpgt (ENSACIG00000012894)	acot11b (ENSACIG00000012944)
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a #22	ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Nile tilapia	DUPLICATION
Nile tilapia	DUPLICATION
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	14	olfml2ba (ENSONIG00000002131)	ENSONIG00000029315	ENSONIG00000041071	ENSONIG00000031953	ENSONIG00000002127	ENSONIG00000002126	FYCO1 (ENSONIG00000002122)	ENSONIG00000042962	GHRHR (ENSONIG00000002118)	ENSONIG00000031658	ENSONIG00000002114	ENSONIG00000042917	uqcrh (ENSONIG00000035546) #26	ENSONIG00000030331 #22	ENSONIG00000033411 #22	ENSONIG00000035053 #22	ENSONIG00000028087 #22	ENSONIG00000002105 #22	ENSONIG00000042134 #22	dmbx1b (ENSONIG00000027990) #19	mknk1 (ENSONIG00000002096) #16	mob3c (ENSONIG00000002094) #15	elovl1b (ENSONIG00000002074)	ENSONIG00000002092	btf3l4 (ENSONIG00000002085)	ptgfr (ENSONIG00000002071)	st6galnac5b (ENSONIG00000002068)	SLC44A5 (ENSONIG00000002054)	ENSONIG00000002052	ENSONIG00000029763	tnni3k (ENSONIG00000002045)
Nile tilapia	MODERN SPECIES	14	ENSONIG00000041071	ENSONIG00000031953	ENSONIG00000002127	ENSONIG00000002126	FYCO1 (ENSONIG00000002122)	ENSONIG00000042962	GHRHR (ENSONIG00000002118)	ENSONIG00000031658	ENSONIG00000002114	ENSONIG00000042917	uqcrh (ENSONIG00000035546) #26	ENSONIG00000030331 #22	ENSONIG00000033411 #22	ENSONIG00000035053 #22	ENSONIG00000028087 #22	ENSONIG00000002105 #22	ENSONIG00000042134 #22	dmbx1b (ENSONIG00000027990) #19	mknk1 (ENSONIG00000002096) #16	mob3c (ENSONIG00000002094) #15	elovl1b (ENSONIG00000002074)	ENSONIG00000002092	btf3l4 (ENSONIG00000002085)	ptgfr (ENSONIG00000002071)	st6galnac5b (ENSONIG00000002068)	SLC44A5 (ENSONIG00000002054)	ENSONIG00000002052	ENSONIG00000029763	tnni3k (ENSONIG00000002045)	fpgt (ENSONIG00000002041)	acot11b (ENSONIG00000002039)
Nile tilapia	MODERN SPECIES	14	ENSONIG00000029315	ENSONIG00000041071	ENSONIG00000031953	ENSONIG00000002127	ENSONIG00000002126	FYCO1 (ENSONIG00000002122)	ENSONIG00000042962	GHRHR (ENSONIG00000002118)	ENSONIG00000031658	ENSONIG00000002114	ENSONIG00000042917	uqcrh (ENSONIG00000035546) #26	ENSONIG00000030331 #22	ENSONIG00000033411 #22	ENSONIG00000035053 #22	ENSONIG00000028087 #22	ENSONIG00000002105 #22	ENSONIG00000042134 #22	dmbx1b (ENSONIG00000027990) #19	mknk1 (ENSONIG00000002096) #16	mob3c (ENSONIG00000002094) #15	elovl1b (ENSONIG00000002074)	ENSONIG00000002092	btf3l4 (ENSONIG00000002085)	ptgfr (ENSONIG00000002071)	st6galnac5b (ENSONIG00000002068)	SLC44A5 (ENSONIG00000002054)	ENSONIG00000002052	ENSONIG00000029763	tnni3k (ENSONIG00000002045)	fpgt (ENSONIG00000002041)
Nile tilapia	MODERN SPECIES	14	atf6 (ENSONIG00000002137)	olfml2ba (ENSONIG00000002131)	ENSONIG00000029315	ENSONIG00000041071	ENSONIG00000031953	ENSONIG00000002127	ENSONIG00000002126	FYCO1 (ENSONIG00000002122)	ENSONIG00000042962	GHRHR (ENSONIG00000002118)	ENSONIG00000031658	ENSONIG00000002114	ENSONIG00000042917	uqcrh (ENSONIG00000035546) #26	ENSONIG00000030331 #22	ENSONIG00000033411 #22	ENSONIG00000035053 #22	ENSONIG00000028087 #22	ENSONIG00000002105 #22	ENSONIG00000042134 #22	dmbx1b (ENSONIG00000027990) #19	mknk1 (ENSONIG00000002096) #16	mob3c (ENSONIG00000002094) #15	elovl1b (ENSONIG00000002074)	ENSONIG00000002092	btf3l4 (ENSONIG00000002085)	ptgfr (ENSONIG00000002071)	st6galnac5b (ENSONIG00000002068)	SLC44A5 (ENSONIG00000002054)	ENSONIG00000002052	ENSONIG00000029763
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	26	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a #22	ENSGT00940000163316.q.a #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.a.d.a.b #22	ENSGT00940000163316.q.a.c #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.a.b	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a.d.b #22	ENSGT00940000163316.q.a.c #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Haplochromini_B	DUPLICATION
Haplochromini_B	DUPLICATION
Haplochromini_B	DUPLICATION
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.a.b	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.a.c.b #22	ENSGT00940000163316.q.a.c.a.a.a #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005007415	ENSMZEG00005007386	XCR1 (ENSMZEG00005007372)	XCR1 (ENSMZEG00005007363)	FYCO1 (ENSMZEG00005007338)	GHRHR (ENSMZEG00005007303)	ENSMZEG00005007224	ENSMZEG00005007191	uqcrh (ENSMZEG00005007172) #26	ENSMZEG00005007100 #22	ENSMZEG00005007064 #22	ENSMZEG00005007000 #22	ENSMZEG00005006944 #22	ENSMZEG00005006841 #22	ENSMZEG00005006792 #22	ENSMZEG00005006728 #22	ENSMZEG00005006695 #22	dmbx1b (ENSMZEG00005006668) #19	TMEM275 (ENSMZEG00005006653) #18	mknk1 (ENSMZEG00005006627) #16	mob3c (ENSMZEG00005006607) #15	elovl1b (ENSMZEG00005006588)	ENSMZEG00005006547	btf3l4 (ENSMZEG00005006528)	ptgfr (ENSMZEG00005006512)	st6galnac5b (ENSMZEG00005006504)	SLC44A5 (ENSMZEG00005006433)	ENSMZEG00005006386	ENSMZEG00005006239	tnni3k (ENSMZEG00005006161)	fpgt (ENSMZEG00005006150)
Eastern happy	MODERN SPECIES	14	ENSACLG00000024648	ENSACLG00000024615	XCR1 (ENSACLG00000024601)	XCR1 (ENSACLG00000024598)	FYCO1 (ENSACLG00000024541)	ENSACLG00000024510	ENSACLG00000024457	ENSACLG00000024380	ENSACLG00000024335	uqcrh (ENSACLG00000024322) #26	ENSACLG00000024320 #22	ENSACLG00000024314 #22	ENSACLG00000024301 #22	ENSACLG00000024286 #22	ENSACLG00000024281	ENSACLG00000024266 #22	ENSACLG00000024256 #22	dmbx1b (ENSACLG00000024250) #19	TMEM275 (ENSACLG00000024249) #18	mknk1 (ENSACLG00000024246) #16	mob3c (ENSACLG00000024243) #15	elovl1b (ENSACLG00000024235)	ENSACLG00000024229	btf3l4 (ENSACLG00000024224)	st6galnac5b (ENSACLG00000024216)	SLC44A5 (ENSACLG00000024195)	ENSACLG00000024176	ENSACLG00000024165	tnni3k (ENSACLG00000024136)	fpgt (ENSACLG00000024123)	acot11b (ENSACLG00000024048)
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00940000163316.q.a.c.a.a.b #22
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005007554	atf6 (ENSMZEG00005007491)	olfml2ba (ENSMZEG00005007463)	ENSMZEG00005007415	ENSMZEG00005007386	XCR1 (ENSMZEG00005007372)	XCR1 (ENSMZEG00005007363)	FYCO1 (ENSMZEG00005007338)	GHRHR (ENSMZEG00005007303)	ENSMZEG00005007224	ENSMZEG00005007191	uqcrh (ENSMZEG00005007172) #26	ENSMZEG00005007100 #22	ENSMZEG00005007064 #22	ENSMZEG00005007000 #22	ENSMZEG00005006944 #22	ENSMZEG00005006841 #22	ENSMZEG00005006792 #22	ENSMZEG00005006728 #22	ENSMZEG00005006695 #22	dmbx1b (ENSMZEG00005006668) #19	TMEM275 (ENSMZEG00005006653) #18	mknk1 (ENSMZEG00005006627) #16	mob3c (ENSMZEG00005006607) #15	elovl1b (ENSMZEG00005006588)	ENSMZEG00005006547	btf3l4 (ENSMZEG00005006528)	ptgfr (ENSMZEG00005006512)	st6galnac5b (ENSMZEG00005006504)	SLC44A5 (ENSMZEG00005006433)	ENSMZEG00005006386
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00940000163316.q.a.c.a.b #22
Zebra mbuna	MODERN SPECIES	1105	atf6 (ENSMZEG00005007491)	olfml2ba (ENSMZEG00005007463)	ENSMZEG00005007415	ENSMZEG00005007386	XCR1 (ENSMZEG00005007372)	XCR1 (ENSMZEG00005007363)	FYCO1 (ENSMZEG00005007338)	GHRHR (ENSMZEG00005007303)	ENSMZEG00005007224	ENSMZEG00005007191	uqcrh (ENSMZEG00005007172) #26	ENSMZEG00005007100 #22	ENSMZEG00005007064 #22	ENSMZEG00005007000 #22	ENSMZEG00005006944 #22	ENSMZEG00005006841 #22	ENSMZEG00005006792 #22	ENSMZEG00005006728 #22	ENSMZEG00005006695 #22	dmbx1b (ENSMZEG00005006668) #19	TMEM275 (ENSMZEG00005006653) #18	mknk1 (ENSMZEG00005006627) #16	mob3c (ENSMZEG00005006607) #15	elovl1b (ENSMZEG00005006588)	ENSMZEG00005006547	btf3l4 (ENSMZEG00005006528)	ptgfr (ENSMZEG00005006512)	st6galnac5b (ENSMZEG00005006504)	SLC44A5 (ENSMZEG00005006433)	ENSMZEG00005006386	ENSMZEG00005006239
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.a.b	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.a.c.b #22	ENSGT00940000163316.q.a.c.a.a.a #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Zebra mbuna	MODERN SPECIES	1105	olfml2ba (ENSMZEG00005007463)	ENSMZEG00005007415	ENSMZEG00005007386	XCR1 (ENSMZEG00005007372)	XCR1 (ENSMZEG00005007363)	FYCO1 (ENSMZEG00005007338)	GHRHR (ENSMZEG00005007303)	ENSMZEG00005007224	ENSMZEG00005007191	uqcrh (ENSMZEG00005007172) #26	ENSMZEG00005007100 #22	ENSMZEG00005007064 #22	ENSMZEG00005007000 #22	ENSMZEG00005006944 #22	ENSMZEG00005006841 #22	ENSMZEG00005006792 #22	ENSMZEG00005006728 #22	ENSMZEG00005006695 #22	dmbx1b (ENSMZEG00005006668) #19	TMEM275 (ENSMZEG00005006653) #18	mknk1 (ENSMZEG00005006627) #16	mob3c (ENSMZEG00005006607) #15	elovl1b (ENSMZEG00005006588)	ENSMZEG00005006547	btf3l4 (ENSMZEG00005006528)	ptgfr (ENSMZEG00005006512)	st6galnac5b (ENSMZEG00005006504)	SLC44A5 (ENSMZEG00005006433)	ENSMZEG00005006386	ENSMZEG00005006239	tnni3k (ENSMZEG00005006161)
Eastern happy	MODERN SPECIES	14	atf6 (ENSACLG00000024730)	olfml2ba (ENSACLG00000024696)	ENSACLG00000024648	ENSACLG00000024615	XCR1 (ENSACLG00000024601)	XCR1 (ENSACLG00000024598)	FYCO1 (ENSACLG00000024541)	ENSACLG00000024510	ENSACLG00000024457	ENSACLG00000024380	ENSACLG00000024335	uqcrh (ENSACLG00000024322) #26	ENSACLG00000024320 #22	ENSACLG00000024314 #22	ENSACLG00000024301 #22	ENSACLG00000024286 #22	ENSACLG00000024281	ENSACLG00000024266 #22	ENSACLG00000024256 #22	dmbx1b (ENSACLG00000024250) #19	TMEM275 (ENSACLG00000024249) #18	mknk1 (ENSACLG00000024246) #16	mob3c (ENSACLG00000024243) #15	elovl1b (ENSACLG00000024235)	ENSACLG00000024229	btf3l4 (ENSACLG00000024224)	st6galnac5b (ENSACLG00000024216)	SLC44A5 (ENSACLG00000024195)	ENSACLG00000024176	ENSACLG00000024165	tnni3k (ENSACLG00000024136)
Haplochromini	DUPLICATION
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000163316.q.a.d.a.a #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00940000163316.q.a.d.a.a #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00940000163316.q.a.d.a.a #22
Eastern happy	MODERN SPECIES	14	ENSACLG00000024841	ENSACLG00000024797	atf6 (ENSACLG00000024730)	olfml2ba (ENSACLG00000024696)	ENSACLG00000024648	ENSACLG00000024615	XCR1 (ENSACLG00000024601)	XCR1 (ENSACLG00000024598)	FYCO1 (ENSACLG00000024541)	ENSACLG00000024510	ENSACLG00000024457	ENSACLG00000024380	ENSACLG00000024335	uqcrh (ENSACLG00000024322) #26	ENSACLG00000024320 #22	ENSACLG00000024314 #22	ENSACLG00000024301 #22	ENSACLG00000024286 #22	ENSACLG00000024281	ENSACLG00000024266 #22	ENSACLG00000024256 #22	dmbx1b (ENSACLG00000024250) #19	TMEM275 (ENSACLG00000024249) #18	mknk1 (ENSACLG00000024246) #16	mob3c (ENSACLG00000024243) #15	elovl1b (ENSACLG00000024235)	ENSACLG00000024229	btf3l4 (ENSACLG00000024224)	st6galnac5b (ENSACLG00000024216)	SLC44A5 (ENSACLG00000024195)	ENSACLG00000024176
Burton s mouthbrooder	MODERN SPECIES	1560														ENSHBUG00000020999 #22	ENSHBUG00000020920 #22	ENSHBUG00000020891 #22
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.a.d.a.b #22	ENSGT00940000163316.q.a.c #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00940000163316.q.a.d.a.b #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00940000163316.q.a.d.a.b #22
Eastern happy	MODERN SPECIES	14	lmx1a (ENSACLG00000024849)	ENSACLG00000024841	ENSACLG00000024797	atf6 (ENSACLG00000024730)	olfml2ba (ENSACLG00000024696)	ENSACLG00000024648	ENSACLG00000024615	XCR1 (ENSACLG00000024601)	XCR1 (ENSACLG00000024598)	FYCO1 (ENSACLG00000024541)	ENSACLG00000024510	ENSACLG00000024457	ENSACLG00000024380	ENSACLG00000024335	uqcrh (ENSACLG00000024322) #26	ENSACLG00000024320 #22	ENSACLG00000024314 #22	ENSACLG00000024301 #22	ENSACLG00000024286 #22	ENSACLG00000024281	ENSACLG00000024266 #22	ENSACLG00000024256 #22	dmbx1b (ENSACLG00000024250) #19	TMEM275 (ENSACLG00000024249) #18	mknk1 (ENSACLG00000024246) #16	mob3c (ENSACLG00000024243) #15	elovl1b (ENSACLG00000024235)	ENSACLG00000024229	btf3l4 (ENSACLG00000024224)	st6galnac5b (ENSACLG00000024216)	SLC44A5 (ENSACLG00000024195)
P. nyererei	MODERN SPECIES	494														ENSPNYG00000006057	ENSPNYG00000006117 #22	ENSPNYG00000006188 #22	dmbx1b (ENSPNYG00000006207) #19	TMEM275 (ENSPNYG00000006224) #18	mknk1 (ENSPNYG00000006240) #16	mob3c (ENSPNYG00000006274) #15	elovl1b (ENSPNYG00000006294)	ENSPNYG00000006320	btf3l4 (ENSPNYG00000006364)	ptgfr (ENSPNYG00000006383)	ENSPNYG00000006396	st6galnac5b (ENSPNYG00000006419)	SLC44A5 (ENSPNYG00000006449)	ENSPNYG00000006523	ENSPNYG00000006558	tnni3k (ENSPNYG00000006681)	fpgt (ENSPNYG00000006740)
Burton s mouthbrooder	MODERN SPECIES	1560															ENSHBUG00000020999 #22	ENSHBUG00000020920 #22	ENSHBUG00000020891 #22
Haplochromini	ANCESTRAL SPECIES	437															ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a.d.b #22
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.a.b	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a.d.b #22	ENSGT00940000163316.q.a.c #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Haplochromini_B	ANCESTRAL SPECIES	417															ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a.d.b #22
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005007573	ENSMZEG00005007554	atf6 (ENSMZEG00005007491)	olfml2ba (ENSMZEG00005007463)	ENSMZEG00005007415	ENSMZEG00005007386	XCR1 (ENSMZEG00005007372)	XCR1 (ENSMZEG00005007363)	FYCO1 (ENSMZEG00005007338)	GHRHR (ENSMZEG00005007303)	ENSMZEG00005007224	ENSMZEG00005007191	uqcrh (ENSMZEG00005007172) #26	ENSMZEG00005007100 #22	ENSMZEG00005007064 #22	ENSMZEG00005007000 #22	ENSMZEG00005006944 #22	ENSMZEG00005006841 #22	ENSMZEG00005006792 #22	ENSMZEG00005006728 #22	ENSMZEG00005006695 #22	dmbx1b (ENSMZEG00005006668) #19	TMEM275 (ENSMZEG00005006653) #18	mknk1 (ENSMZEG00005006627) #16	mob3c (ENSMZEG00005006607) #15	elovl1b (ENSMZEG00005006588)	ENSMZEG00005006547	btf3l4 (ENSMZEG00005006528)	ptgfr (ENSMZEG00005006512)	st6galnac5b (ENSMZEG00005006504)	SLC44A5 (ENSMZEG00005006433)
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a #22	ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Nile tilapia	MODERN SPECIES	14	ENSONIG00000002143	atf6 (ENSONIG00000002137)	olfml2ba (ENSONIG00000002131)	ENSONIG00000029315	ENSONIG00000041071	ENSONIG00000031953	ENSONIG00000002127	ENSONIG00000002126	FYCO1 (ENSONIG00000002122)	ENSONIG00000042962	GHRHR (ENSONIG00000002118)	ENSONIG00000031658	ENSONIG00000002114	ENSONIG00000042917	uqcrh (ENSONIG00000035546) #26	ENSONIG00000030331 #22	ENSONIG00000033411 #22	ENSONIG00000035053 #22	ENSONIG00000028087 #22	ENSONIG00000002105 #22	ENSONIG00000042134 #22	dmbx1b (ENSONIG00000027990) #19	mknk1 (ENSONIG00000002096) #16	mob3c (ENSONIG00000002094) #15	elovl1b (ENSONIG00000002074)	ENSONIG00000002092	btf3l4 (ENSONIG00000002085)	ptgfr (ENSONIG00000002071)	st6galnac5b (ENSONIG00000002068)	SLC44A5 (ENSONIG00000002054)	ENSONIG00000002052
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00940000163316.q.b #22
Haplochromini	ANCESTRAL SPECIES	437																ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a.d.b #22
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.a.b	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a.d.b #22	ENSGT00940000163316.q.a.c #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485
Haplochromini_B	ANCESTRAL SPECIES	417																ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a.d.b #22
Zebra mbuna	MODERN SPECIES	1105	lmx1a (ENSMZEG00005007577)	ENSMZEG00005007573	ENSMZEG00005007554	atf6 (ENSMZEG00005007491)	olfml2ba (ENSMZEG00005007463)	ENSMZEG00005007415	ENSMZEG00005007386	XCR1 (ENSMZEG00005007372)	XCR1 (ENSMZEG00005007363)	FYCO1 (ENSMZEG00005007338)	GHRHR (ENSMZEG00005007303)	ENSMZEG00005007224	ENSMZEG00005007191	uqcrh (ENSMZEG00005007172) #26	ENSMZEG00005007100 #22	ENSMZEG00005007064 #22	ENSMZEG00005007000 #22	ENSMZEG00005006944 #22	ENSMZEG00005006841 #22	ENSMZEG00005006792 #22	ENSMZEG00005006728 #22	ENSMZEG00005006695 #22	dmbx1b (ENSMZEG00005006668) #19	TMEM275 (ENSMZEG00005006653) #18	mknk1 (ENSMZEG00005006627) #16	mob3c (ENSMZEG00005006607) #15	elovl1b (ENSMZEG00005006588)	ENSMZEG00005006547	btf3l4 (ENSMZEG00005006528)	ptgfr (ENSMZEG00005006512)	st6galnac5b (ENSMZEG00005006504)
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a #22	ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	26	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a #22	ENSGT00940000163316.q.a #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000163316.r.a.a #22
Burton s mouthbrooder	MODERN SPECIES	1560																ENSHBUG00000020999 #22	ENSHBUG00000020920 #22	ENSHBUG00000020891 #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00940000163316.r.a.a #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00940000163316.r.a.a #22
Eastern happy	MODERN SPECIES	14	ENSACLG00000024797	atf6 (ENSACLG00000024730)	olfml2ba (ENSACLG00000024696)	ENSACLG00000024648	ENSACLG00000024615	XCR1 (ENSACLG00000024601)	XCR1 (ENSACLG00000024598)	FYCO1 (ENSACLG00000024541)	ENSACLG00000024510	ENSACLG00000024457	ENSACLG00000024380	ENSACLG00000024335	uqcrh (ENSACLG00000024322) #26	ENSACLG00000024320 #22	ENSACLG00000024314 #22	ENSACLG00000024301 #22	ENSACLG00000024286 #22	ENSACLG00000024281	ENSACLG00000024266 #22	ENSACLG00000024256 #22	dmbx1b (ENSACLG00000024250) #19	TMEM275 (ENSACLG00000024249) #18	mknk1 (ENSACLG00000024246) #16	mob3c (ENSACLG00000024243) #15	elovl1b (ENSACLG00000024235)	ENSACLG00000024229	btf3l4 (ENSACLG00000024224)	st6galnac5b (ENSACLG00000024216)	SLC44A5 (ENSACLG00000024195)	ENSACLG00000024176	ENSACLG00000024165
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.a.d.a.b #22	ENSGT00940000163316.q.a.c #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.a.b	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a.d.b #22	ENSGT00940000163316.q.a.c #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.a.b	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.a.c.b #22	ENSGT00940000163316.q.a.c.a.a.a #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005007592	lmx1a (ENSMZEG00005007577)	ENSMZEG00005007573	ENSMZEG00005007554	atf6 (ENSMZEG00005007491)	olfml2ba (ENSMZEG00005007463)	ENSMZEG00005007415	ENSMZEG00005007386	XCR1 (ENSMZEG00005007372)	XCR1 (ENSMZEG00005007363)	FYCO1 (ENSMZEG00005007338)	GHRHR (ENSMZEG00005007303)	ENSMZEG00005007224	ENSMZEG00005007191	uqcrh (ENSMZEG00005007172) #26	ENSMZEG00005007100 #22	ENSMZEG00005007064 #22	ENSMZEG00005007000 #22	ENSMZEG00005006944 #22	ENSMZEG00005006841 #22	ENSMZEG00005006792 #22	ENSMZEG00005006728 #22	ENSMZEG00005006695 #22	dmbx1b (ENSMZEG00005006668) #19	TMEM275 (ENSMZEG00005006653) #18	mknk1 (ENSMZEG00005006627) #16	mob3c (ENSMZEG00005006607) #15	elovl1b (ENSMZEG00005006588)	ENSMZEG00005006547	btf3l4 (ENSMZEG00005006528)	ptgfr (ENSMZEG00005006512)
Eastern happy	MODERN SPECIES	177													ENSACLG00000004449	uqcrh (ENSACLG00000004506) #26	ENSACLG00000004581	ENSACLG00000004597 #22
Lyretail cichlid	MODERN SPECIES	361	SELE (ENSNBRG00000001884)	ENSNBRG00000001992	ENSNBRG00000002032	selp (ENSNBRG00000002070)	ENSNBRG00000002128	lmx1a (ENSNBRG00000002146)	ENSNBRG00000002177	ENSNBRG00000002275	atf6 (ENSNBRG00000003029)	olfml2ba (ENSNBRG00000003220)	XCR1 (ENSNBRG00000003237)	XCR1 (ENSNBRG00000003241)	FYCO1 (ENSNBRG00000003254)	GHRHR (ENSNBRG00000003269)	ENSNBRG00000003306	ENSNBRG00000003365 #22
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a #22	ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Nile tilapia	MODERN SPECIES	14	ENSONIG00000031953	ENSONIG00000002127	ENSONIG00000002126	FYCO1 (ENSONIG00000002122)	ENSONIG00000042962	GHRHR (ENSONIG00000002118)	ENSONIG00000031658	ENSONIG00000002114	ENSONIG00000042917	uqcrh (ENSONIG00000035546) #26	ENSONIG00000030331 #22	ENSONIG00000033411 #22	ENSONIG00000035053 #22	ENSONIG00000028087 #22	ENSONIG00000002105 #22	ENSONIG00000042134 #22	dmbx1b (ENSONIG00000027990) #19	mknk1 (ENSONIG00000002096) #16	mob3c (ENSONIG00000002094) #15	elovl1b (ENSONIG00000002074)	ENSONIG00000002092	btf3l4 (ENSONIG00000002085)	ptgfr (ENSONIG00000002071)	st6galnac5b (ENSONIG00000002068)	SLC44A5 (ENSONIG00000002054)	ENSONIG00000002052	ENSONIG00000029763	tnni3k (ENSONIG00000002045)	fpgt (ENSONIG00000002041)	acot11b (ENSONIG00000002039)	ssbp3b (ENSONIG00000002033)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	26	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a #22	ENSGT00940000163316.q.a #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Lyretail cichlid	MODERN SPECIES	595																ENSNBRG00000024226 #22	dmbx1b (ENSNBRG00000024227) #19	TMEM275 (ENSNBRG00000024228) #18	mknk1 (ENSNBRG00000024229) #16	mob3c (ENSNBRG00000024230) #15	elovl1b (ENSNBRG00000024231)	ENSNBRG00000024232	btf3l4 (ENSNBRG00000024233)	ptgfr (ENSNBRG00000024234)	ST6GALNAC5 (ENSNBRG00000024235)	ENSNBRG00000024236
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.a.d.a.b #22	ENSGT00940000163316.q.a.c #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Burton s mouthbrooder	MODERN SPECIES	765																ENSHBUG00000006985 #22	dmbx1b (ENSHBUG00000007033) #19	TMEM275 (ENSHBUG00000000172) #18	mknk1 (ENSHBUG00000007087) #16	mob3c (ENSHBUG00000007097) #15	elovl1b (ENSHBUG00000007114)	ENSHBUG00000007146	btf3l4 (ENSHBUG00000007167)	ptgfr (ENSHBUG00000007177)	st6galnac5b (ENSHBUG00000007183)	SLC44A5 (ENSHBUG00000007250)	ENSHBUG00000007269	ENSHBUG00000007283	tnni3k (ENSHBUG00000007333)	fpgt (ENSHBUG00000007348)	acot11b (ENSHBUG00000000183)
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.a.b	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.b #22	ENSGT00940000163316.q.a.d.b #22	ENSGT00940000163316.q.a.c #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
P. nyererei	MODERN SPECIES	494															ENSPNYG00000006057	ENSPNYG00000006117 #22	ENSPNYG00000006188 #22	dmbx1b (ENSPNYG00000006207) #19	TMEM275 (ENSPNYG00000006224) #18	mknk1 (ENSPNYG00000006240) #16	mob3c (ENSPNYG00000006274) #15	elovl1b (ENSPNYG00000006294)	ENSPNYG00000006320	btf3l4 (ENSPNYG00000006364)	ptgfr (ENSPNYG00000006383)	ENSPNYG00000006396	st6galnac5b (ENSPNYG00000006419)	SLC44A5 (ENSPNYG00000006449)	ENSPNYG00000006523	ENSPNYG00000006558	tnni3k (ENSPNYG00000006681)
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j.n	ENSGT01090000260052.a.b.j.m	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.a.b	ENSGT00390000003860.gb #26	ENSGT00940000163316.r.a.b #22	ENSGT00940000163316.q.a.c.b #22	ENSGT00940000163316.q.a.c.a.a.a #22	ENSGT00940000163316.r.b #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005007386	XCR1 (ENSMZEG00005007372)	XCR1 (ENSMZEG00005007363)	FYCO1 (ENSMZEG00005007338)	GHRHR (ENSMZEG00005007303)	ENSMZEG00005007224	ENSMZEG00005007191	uqcrh (ENSMZEG00005007172) #26	ENSMZEG00005007100 #22	ENSMZEG00005007064 #22	ENSMZEG00005007000 #22	ENSMZEG00005006944 #22	ENSMZEG00005006841 #22	ENSMZEG00005006792 #22	ENSMZEG00005006728 #22	ENSMZEG00005006695 #22	dmbx1b (ENSMZEG00005006668) #19	TMEM275 (ENSMZEG00005006653) #18	mknk1 (ENSMZEG00005006627) #16	mob3c (ENSMZEG00005006607) #15	elovl1b (ENSMZEG00005006588)	ENSMZEG00005006547	btf3l4 (ENSMZEG00005006528)	ptgfr (ENSMZEG00005006512)	st6galnac5b (ENSMZEG00005006504)	SLC44A5 (ENSMZEG00005006433)	ENSMZEG00005006386	ENSMZEG00005006239	tnni3k (ENSMZEG00005006161)	fpgt (ENSMZEG00005006150)	acot11b (ENSMZEG00005006114)
Eastern happy	MODERN SPECIES	14	ENSACLG00000024615	XCR1 (ENSACLG00000024601)	XCR1 (ENSACLG00000024598)	FYCO1 (ENSACLG00000024541)	ENSACLG00000024510	ENSACLG00000024457	ENSACLG00000024380	ENSACLG00000024335	uqcrh (ENSACLG00000024322) #26	ENSACLG00000024320 #22	ENSACLG00000024314 #22	ENSACLG00000024301 #22	ENSACLG00000024286 #22	ENSACLG00000024281	ENSACLG00000024266 #22	ENSACLG00000024256 #22	dmbx1b (ENSACLG00000024250) #19	TMEM275 (ENSACLG00000024249) #18	mknk1 (ENSACLG00000024246) #16	mob3c (ENSACLG00000024243) #15	elovl1b (ENSACLG00000024235)	ENSACLG00000024229	btf3l4 (ENSACLG00000024224)	st6galnac5b (ENSACLG00000024216)	SLC44A5 (ENSACLG00000024195)	ENSACLG00000024176	ENSACLG00000024165	tnni3k (ENSACLG00000024136)	fpgt (ENSACLG00000024123)	acot11b (ENSACLG00000024048)	ssbp3b (ENSACLG00000023952)
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00940000181277	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000157704.b	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000166653	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00940000164633	ENSGT00940000181277	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000166653	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00940000164633	ENSGT00940000181277	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000166653	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Ballan wrasse	MODERN SPECIES	350										ENSLBEG00000018718	ENSLBEG00000018708	ENSLBEG00000018695	ENSLBEG00000018685	ENSLBEG00000018667	uqcrh (ENSLBEG00000018641) #26	ENSLBEG00000018620 #22	dmbx1b (ENSLBEG00000018606) #19	TMEM275 (ENSLBEG00000018592) #18	mknk1 (ENSLBEG00000018557) #16	mob3c (ENSLBEG00000018528) #15	elovl1b (ENSLBEG00000018505)	ENSLBEG00000018487	btf3l4 (ENSLBEG00000018465)	ptgfr (ENSLBEG00000018446)	st6galnac5b (ENSLBEG00000018425)	SLC44A5 (ENSLBEG00000018271)	ENSLBEG00000018147	erich3 (ENSLBEG00000018097)	tnni3k (ENSLBEG00000018038)	fpgt (ENSLBEG00000017978)	acot11b (ENSLBEG00000017914)
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00940000164633	ENSGT00940000181277	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000166653	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000164178	ENSGT00390000012596.f	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Gilthead seabream	MODERN SPECIES	2	ENSSAUG00010010072	atf6 (ENSSAUG00010010051)	olfml2ba (ENSSAUG00010010044)	ENSSAUG00010010041	ENSSAUG00010010038	ENSSAUG00010010035	XCR1 (ENSSAUG00010010034)	FYCO1 (ENSSAUG00010010030)	GHRHR (ENSSAUG00010009990)	ENSSAUG00010009984	UQCRH (ENSSAUG00010009981) #26	ENSSAUG00010009960	ENSSAUG00010009958	ENSSAUG00010009956	ENSSAUG00010009955	ENSSAUG00010009942 #22	dmbx1b (ENSSAUG00010009931) #19	MKNK1 (ENSSAUG00010008968)	mob3c (ENSSAUG00010008956) #15	elovl1b (ENSSAUG00010008951)	ENSSAUG00010008948	btf3l4 (ENSSAUG00010008946)	ptgfr (ENSSAUG00010008941)	st6galnac5b (ENSSAUG00010008940)	SLC44A5 (ENSSAUG00010008406)	ENSSAUG00010008395	ENSSAUG00010008388	fpgt (ENSSAUG00010008386)	tnni3k (ENSSAUG00010007841)	ssbp3b (ENSSAUG00010007794)	dio1 (ENSSAUG00010007784)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00940000164633	ENSGT00940000181277	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
European seabass	MODERN SPECIES	17	SELE (ENSDLAG00005002251)	ENSDLAG00005002259	selp (ENSDLAG00005002264)	lmx1a (ENSDLAG00005002380)	ENSDLAG00005002589	atf6 (ENSDLAG00005003123)	olfml2ba (ENSDLAG00005033946)	ENSDLAG00005029968	ENSDLAG00005031451	ENSDLAG00005032585	ENSDLAG00005003405	ENSDLAG00005003535	ENSDLAG00005029185	ENSDLAG00005003654	ENSDLAG00005003877 #26	ENSDLAG00005003928 #22	ENSDLAG00005004783 #19	mknk1 (ENSDLAG00005004843) #16	elovl1b (ENSDLAG00005006144)	ENSDLAG00005006163	btf3l4 (ENSDLAG00005029247)	ptgfr (ENSDLAG00005006201)	st6galnac5b (ENSDLAG00005032529)	ENSDLAG00005006378	ENSDLAG00005029337	ENSDLAG00005008796	tnni3k (ENSDLAG00005008823)	fpgt (ENSDLAG00005009061)	acot11b (ENSDLAG00005009074)	ssbp3b (ENSDLAG00005009167)	ENSDLAG00005026914
Large yellow croaker	MODERN SPECIES	489	si:dkey-51e6.1 (ENSLCRG00005013322)	sele (ENSLCRG00005013315)	ENSLCRG00005013312	selp (ENSLCRG00005013285)	lmx1a (ENSLCRG00005013283)	ENSLCRG00005011853	atf6 (ENSLCRG00005011841)	olfml2ba (ENSLCRG00005011836)	ENSLCRG00005011834	ENSLCRG00005011828	XCR1 (ENSLCRG00005011826)	FYCO1 (ENSLCRG00005011802)	GHRHR (ENSLCRG00005011679)	ENSLCRG00005011581	ENSLCRG00005011568	ENSLCRG00005011476 #22	dmbx1b (ENSLCRG00005011451) #19	TMEM275 (ENSLCRG00005011449) #18	mknk1 (ENSLCRG00005009343) #16	mob3c (ENSLCRG00005009332) #15	elovl1b (ENSLCRG00005009331)	ENSLCRG00005009272	btf3l4 (ENSLCRG00005009267)	ptgfr (ENSLCRG00005009264)	st6galnac5b (ENSLCRG00005009263)	ENSLCRG00005009261	ENSLCRG00005009260	SLC44A5 (ENSLCRG00005009070)	ENSLCRG00005009048	tnni3k (ENSLCRG00005008612)	fpgt (ENSLCRG00005008602)
Perciformes	ANCESTRAL SPECIES	8	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000166653	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000166653	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Lumpfish	MODERN SPECIES	19	ENSCLMG00005014643	selp (ENSCLMG00005014639)	lmx1a (ENSCLMG00005014638)	ENSCLMG00005012561	atf6 (ENSCLMG00005012555)	OLFML2B (ENSCLMG00005012552)	ENSCLMG00005012550	ENSCLMG00005012548	XCR1 (ENSCLMG00005012547)	FYCO1 (ENSCLMG00005012545)	GHRHR (ENSCLMG00005012540)	ENSCLMG00005009382	ENSCLMG00005004937	cyp2v1 (ENSCLMG00005000941)	uqcrh (ENSCLMG00005000907) #26	ENSCLMG00005000898 #22	dmbx1b (ENSCLMG00005000894) #19	mknk1 (ENSCLMG00005000319) #16	mob3c (ENSCLMG00005000285) #15	elovl1b (ENSCLMG00005000278)	ENSCLMG00005000270	btf3l4 (ENSCLMG00005000264)	ptgfr (ENSCLMG00005000257)	ST6GALNAC5 (ENSCLMG00005000252)	ENSCLMG00005000248	ENSCLMG00005000246	ENSCLMG00005000240	si:dkey-97o5.1 (ENSCLMG00005000230)	scyl3 (ENSCLMG00005000217)	ENSCLMG00005000213	ENSCLMG00005000209
Stickleback	MODERN SPECIES	8	si:dkey-97o5.1 (ENSGACG00000011634)	si:dkey-51e6.1 (ENSGACG00000011653)	sele (ENSGACG00000011663)	lmx1a (ENSGACG00000011682)	ENSGACG00000011685	atf6 (ENSGACG00000011702)	olfml2ba (ENSGACG00000011711)	ENSGACG00000011738	XCR1 (ENSGACG00000011742)	FYCO1 (ENSGACG00000011746)	GHRHR (ENSGACG00000011760)	ENSGACG00000011786	ENSGACG00000011790	cyp2v1 (ENSGACG00000011847)	uqcrh (ENSGACG00000011853) #26	ENSGACG00000011857 #22	dmbx1b (ENSGACG00000011864) #19	mknk1 (ENSGACG00000011869) #16	mob3c (ENSGACG00000011891) #15	elovl1b (ENSGACG00000011897)	ENSGACG00000011930	ENSGACG00000011937	ENSGACG00000011941	btf3l4 (ENSGACG00000011943)	ptgfr (ENSGACG00000011963)	st6galnac5b (ENSGACG00000011969)	SLC44A5 (ENSGACG00000011985)	ENSGACG00000012028	tnni3k (ENSGACG00000012036)	acot11b (ENSGACG00000012055)	ssbp3b (ENSGACG00000012093)
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00990000204278	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00780000122095	ENSGT00940000156460.B	ENSGT00950000183049.B
Pike perch	MODERN SPECIES	34	selp (ENSSLUG00000016635)	lmx1a (ENSSLUG00000016783)	ENSSLUG00000016849	atf6 (ENSSLUG00000018157)	olfml2ba (ENSSLUG00000018182)	ENSSLUG00000018193	ENSSLUG00000018202	ENSSLUG00000018208	XCR1 (ENSSLUG00000018212)	FYCO1 (ENSSLUG00000018217)	GHRHR (ENSSLUG00000018230)	ENSSLUG00000018239	ENSSLUG00000018242	ENSSLUG00000018248	ENSSLUG00000018284	ENSSLUG00000019138 #22	dmbx1b (ENSSLUG00000019143) #19	mknk1 (ENSSLUG00000019229) #16	mob3c (ENSSLUG00000020333) #15	elovl1b (ENSSLUG00000020335)	ENSSLUG00000020370	btf3l4 (ENSSLUG00000020405)	ptgfr (ENSSLUG00000020412)	st6galnac5b (ENSSLUG00000020417)	SLC44A5 (ENSSLUG00000020525)	ENSSLUG00000021739	erich3 (ENSSLUG00000021762)	fpgt (ENSSLUG00000005347)	acot11b (ENSSLUG00000005462)	ssbp3b (ENSSLUG00000006685)	dio1 (ENSSLUG00000006709)
Channel bull blenny	MODERN SPECIES	18	olfml2ba (ENSCGOG00000001027)	ENSCGOG00000001026	ENSCGOG00000001024	XCR1 (ENSCGOG00000001021)	FYCO1 (ENSCGOG00000001013)	GHRHR (ENSCGOG00000000990)	ENSCGOG00000000972	ENSCGOG00000000969	ENSCGOG00000000873	ENSCGOG00000000573	ENSCGOG00000017531	cyp2v1 (ENSCGOG00000015759)	cyp2v1 (ENSCGOG00000015669)	cyp2v1 (ENSCGOG00000015662)	uqcrh (ENSCGOG00000015651) #26	ENSCGOG00000015524 #22	dmbx1b (ENSCGOG00000015516) #19	mknk1 (ENSCGOG00000014627) #16	mob3c (ENSCGOG00000014603) #15	elovl1b (ENSCGOG00000014590)	ENSCGOG00000014581	btf3l4 (ENSCGOG00000014559)	ptgfr (ENSCGOG00000014552)	st6galnac5b (ENSCGOG00000014549)	ENSCGOG00000014547	SLC44A5 (ENSCGOG00000013101)	ENSCGOG00000013043	erich3 (ENSCGOG00000013035)	ENSCGOG00000013031	ENSCGOG00000013028	fpgt (ENSCGOG00000013027)
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00390000008279.b	ENSGT00940000156569.a.b.b	ENSGT00940000166035	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00960000186850.d	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT01030000235480	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Fugu	MODERN SPECIES	12	rex1bd (ENSTRUG00000024133)	FAM78B (ENSTRUG00000017806)	slc35a3a (ENSTRUG00000017803)	notch2 (ENSTRUG00000017773)	sec22bb (ENSTRUG00000017768)	npl (ENSTRUG00000017762)	EDEM3 (ENSTRUG00000017755)	zgc:92140 (ENSTRUG00000017754)	colgalt2b (ENSTRUG00000002342)	FYCO1 (ENSTRUG00000023562)	GHRHR (ENSTRUG00000017747)	ENSTRUG00000026154	ENSTRUG00000017693	ENSTRUG00000017725	uqcrh (ENSTRUG00000025966) #26	ENSTRUG00000017677 #22	ENSTRUG00000031311	ENSTRUG00000001005	ENSTRUG00000030115	ENSTRUG00000017682	ENSTRUG00000033460	ENSTRUG00000031191	ENSTRUG00000027219	ENSTRUG00000030311	dmbx1b (ENSTRUG00000017667) #19	mknk1 (ENSTRUG00000017658) #16	mob3c (ENSTRUG00000017652) #15	elovl1b (ENSTRUG00000021128)	ENSTRUG00000020270	btf3l4 (ENSTRUG00000017639)	ptgfr (ENSTRUG00000017638)
Tetraodon	MODERN SPECIES		crlf1b (ENSTNIG00000019587)	FAM78B (ENSTNIG00000006642)	slc35a3a (ENSTNIG00000006641)	notch2 (ENSTNIG00000006640)	sec22bb (ENSTNIG00000006639)	npl (ENSTNIG00000006638)	EDEM3 (ENSTNIG00000006637)	zgc:92140 (ENSTNIG00000006636)	colgalt2b (ENSTNIG00000006635)	FYCO1 (ENSTNIG00000006634)	GHRHR (ENSTNIG00000006633)	ENSTNIG00000006632	ENSTNIG00000006631	ENSTNIG00000006630	ENSTNIG00000006629	ENSTNIG00000006628 #22	dmbx1b (ENSTNIG00000006627) #19	mknk1 (ENSTNIG00000006626) #16	mob3c (ENSTNIG00000006625) #15	elovl1b (ENSTNIG00000006624)	ENSTNIG00000006623	btf3l4 (ENSTNIG00000006622)	st6galnac5b (ENSTNIG00000010702)	SLC44A5 (ENSTNIG00000010701)	ENSTNIG00000010700	erich3 (ENSTNIG00000010699)	tnni3k (ENSTNIG00000010698)	acot11b (ENSTNIG00000010697)	ssbp3b (ENSTNIG00000010696)	dio1 (ENSTNIG00000010695)	ENSTNIG00000010694
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000157704.b	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT01030000235480	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B	ENSGT00950000183049.B
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000164218	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B	ENSGT00950000183049.B
Climbing perch	MODERN SPECIES	17	SELE (ENSATEG00000004135)	ENSATEG00000004099	selp (ENSATEG00000004083)	lmx1a (ENSATEG00000004039)	ENSATEG00000003990	atf6 (ENSATEG00000003924)	olfml2ba (ENSATEG00000003912)	ENSATEG00000003900	ENSATEG00000003889	ENSATEG00000003881	ENSATEG00000003873	ENSATEG00000003812	ENSATEG00000003797	ENSATEG00000003689	ENSATEG00000003671 #26	ENSATEG00000003665 #22	ENSATEG00000003641 #19	mknk1 (ENSATEG00000003578) #16	mob3c (ENSATEG00000003574) #15	elovl1b (ENSATEG00000003527)	ENSATEG00000003459	btf3l4 (ENSATEG00000003424)	ptgfr (ENSATEG00000003415)	st6galnac5b (ENSATEG00000003396)	ENSATEG00000003319	ENSATEG00000003306	erich3 (ENSATEG00000003202)	tnni3k (ENSATEG00000003086)	fpgt (ENSATEG00000003078)	acot11b (ENSATEG00000003068)	ssbp3b (ENSATEG00000026974)
Siamese fighting fish	MODERN SPECIES	15	ENSBSLG00000011200	smim7 (ENSBSLG00000011234)	tmem38a (ENSBSLG00000011242)	CRTC1 (ENSBSLG00000011296)	klhl26 (ENSBSLG00000011319)	ENSBSLG00000011323	ENSBSLG00000011331	ENSBSLG00000011367	ENSBSLG00000011493	mpv17l2 (ENSBSLG00000011497)	mpv17l2 (ENSBSLG00000011509)	mpv17l2 (ENSBSLG00000011505)	RAB3A (ENSBSLG00000011513)	JUND (ENSBSLG00000011524)	lsm4 (ENSBSLG00000011527)	ENSBSLG00000011546 #22	dmbx1b (ENSBSLG00000012035) #19	mknk1 (ENSBSLG00000012105) #16	mob3c (ENSBSLG00000012387) #15	elovl1b (ENSBSLG00000012396)	ENSBSLG00000012418	btf3l4 (ENSBSLG00000012460)	ptgfr (ENSBSLG00000012499)	st6galnac5b (ENSBSLG00000012502)	SLC44A5 (ENSBSLG00000012576)	ENSBSLG00000015353	ENSBSLG00000015400	tnni3k (ENSBSLG00000015424)	fpgt (ENSBSLG00000015657)	acot11b (ENSBSLG00000015670)	ssbp3b (ENSBSLG00000015798)
Zig-zag eel	MODERN SPECIES	18	ENSMAMG00000002193	ENSMAMG00000002153	SELE (ENSMAMG00000002227)	selp (ENSMAMG00000002112)	lmx1a (ENSMAMG00000002087)	ENSMAMG00000002048	atf6 (ENSMAMG00000001972)	olfml2ba (ENSMAMG00000001964)	ENSMAMG00000001948	ENSMAMG00000001929	ENSMAMG00000001913	ENSMAMG00000001873	ENSMAMG00000001828	ENSMAMG00000001751	ENSMAMG00000001740 #26	ENSMAMG00000001708 #22	ENSMAMG00000001687 #19	mknk1 (ENSMAMG00000001636) #16	mob3c (ENSMAMG00000001611) #15	ELOVL1 (ENSMAMG00000025025)	ENSMAMG00000001552	btf3l4 (ENSMAMG00000001532)	ptgfr (ENSMAMG00000001521)	st6galnac5b (ENSMAMG00000001506)	ENSMAMG00000001440	ENSMAMG00000001398	erich3 (ENSMAMG00000001368)	tnni3k (ENSMAMG00000001255)	fpgt (ENSMAMG00000001235)	acot11b (ENSMAMG00000001131)	ssbp3b (ENSMAMG00000001019)
Carangaria	ANCESTRAL SPECIES	7	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000157704.b	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT01030000235480	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000157704.b	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Seriola	ANCESTRAL SPECIES	21	ENSGT00390000002738.b	ENSGT00940000160168.b.b	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000179641	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Yellowtail amberjack	MODERN SPECIES	2779	selp (ENSSLDG00000016053)	lmx1a (ENSSLDG00000016206)	ENSSLDG00000016241	atf6 (ENSSLDG00000016287)	olfml2ba (ENSSLDG00000016333)	ENSSLDG00000016350	ENSSLDG00000016363	XCR1 (ENSSLDG00000016380)	FYCO1 (ENSSLDG00000016392)	ENSSLDG00000016421	ENSSLDG00000016442	ENSSLDG00000016453	ENSSLDG00000016473	ENSSLDG00000016493	uqcrh (ENSSLDG00000016515) #26	ENSSLDG00000016534 #22	dmbx1b (ENSSLDG00000016598) #19	TMEM275 (ENSSLDG00000016631) #18	mknk1 (ENSSLDG00000016653) #16	mob3c (ENSSLDG00000016690) #15	elovl1b (ENSSLDG00000016710)	ENSSLDG00000016734	btf3l4 (ENSSLDG00000016767)	ptgfr (ENSSLDG00000016780)	st6galnac5b (ENSSLDG00000016795)	SLC44A5 (ENSSLDG00000016821)	ENSSLDG00000016858	ENSSLDG00000016921	tnni3k (ENSSLDG00000017038)	fpgt (ENSSLDG00000017095)	acot11b (ENSSLDG00000017132)
Greater amberjack	MODERN SPECIES	111	SELE (ENSSDUG00000008541)	selp (ENSSDUG00000008073)	lmx1a (ENSSDUG00000008020)	ENSSDUG00000007986	atf6 (ENSSDUG00000007918)	olfml2ba (ENSSDUG00000007900)	ENSSDUG00000007882	ENSSDUG00000007857	XCR1 (ENSSDUG00000007849)	FYCO1 (ENSSDUG00000007818)	ENSSDUG00000007734	ENSSDUG00000007714	ENSSDUG00000007620	ENSSDUG00000007562	uqcrh (ENSSDUG00000007543) #26	ENSSDUG00000007471 #22	dmbx1b (ENSSDUG00000007433) #19	TMEM275 (ENSSDUG00000007423) #18	mknk1 (ENSSDUG00000007388) #16	mob3c (ENSSDUG00000007376) #15	elovl1b (ENSSDUG00000007118)	elovl1b (ENSSDUG00000007043)	ENSSDUG00000007016	btf3l4 (ENSSDUG00000007004)	ptgfr (ENSSDUG00000006992)	st6galnac5b (ENSSDUG00000006971)	SLC44A5 (ENSSDUG00000006875)	ENSSDUG00000006841	erich3 (ENSSDUG00000006823)	tnni3k (ENSSDUG00000006786)	fpgt (ENSSDUG00000006772)
Barramundi perch	MODERN SPECIES	344	ENSLCAG00010011769	selp (ENSLCAG00010011764)	ENSLCAG00010011762	lmx1a (ENSLCAG00010011760)	ENSLCAG00010011682	atf6 (ENSLCAG00010011640)	olfml2ba (ENSLCAG00010011637)	ENSLCAG00010011633	ENSLCAG00010011628	ENSLCAG00010011619	XCR1 (ENSLCAG00010011615)	FYCO1 (ENSLCAG00010011606)	GHRHR (ENSLCAG00010011591)	ENSLCAG00010011583	uqcrh (ENSLCAG00010011578) #26	ENSLCAG00010011566 #22	dmbx1b (ENSLCAG00010011561) #19	TMEM275 (ENSLCAG00010011555) #18	mknk1 (ENSLCAG00010011502) #16	mob3c (ENSLCAG00010011479) #15	elovl1b (ENSLCAG00010011471)	ENSLCAG00010011467	btf3l4 (ENSLCAG00010011460)	ptgfr (ENSLCAG00010011457)
Pleuronectoidei	ANCESTRAL SPECIES	30	ENSGT00390000002738.b	ENSGT00940000160168.b.b	ENSGT00940000164633	ENSGT00940000160168.b.a	ENSGT00940000166054	ENSGT00940000166019	ENSGT00940000159221	ENSGT00940000157757.g.a	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00950000182879.a.b.a.a.a	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00390000008086.b #18	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT00940000156600.f	ENSGT01030000235480	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00940000156460.B
Tongue sole	MODERN SPECIES	11	gclm (ENSCSEG00000020177)	dnttip2 (ENSCSEG00000020173)	ENSCSEG00000020170	ENSCSEG00000020166	bend5 (ENSCSEG00000020165)	elavl4 (ENSCSEG00000020141)	AGBL4 (ENSCSEG00000020112)	dmrta2 (ENSCSEG00000020108)	faf1 (ENSCSEG00000020095)	cdkn2c (ENSCSEG00000020088)	rnf11b (ENSCSEG00000020083)	TTC39A (ENSCSEG00000020076)	EPS15 (ENSCSEG00000020066)	ENSCSEG00000020056	uqcrh (ENSCSEG00000020053) #26	ENSCSEG00000020045 #22	dmbx1b (ENSCSEG00000020040) #19	TMEM275 (ENSCSEG00000020039) #18	mknk1 (ENSCSEG00000020033) #16	mob3c (ENSCSEG00000020027) #15	elovl1b (ENSCSEG00000020021)	ENSCSEG00000020008	ptgfr (ENSCSEG00000020006)	st6galnac5b (ENSCSEG00000020004)	ENSCSEG00000020001	slc34a2b (ENSCSEG00000019996)	prdm5 (ENSCSEG00000019979)	ndnf (ENSCSEG00000019974)	rpl5b (ENSCSEG00000019969)	gna11a (ENSCSEG00000019958)	gna15.4 (ENSCSEG00000019953)
Turbot	MODERN SPECIES	3	si:dkey-51e6.1 (ENSSMAG00000008442)	SELE (ENSSMAG00000008218)	ENSSMAG00000008193	selp (ENSSMAG00000008148)	lmx1a (ENSSMAG00000008127)	ENSSMAG00000008033	atf6 (ENSSMAG00000007997)	olfml2ba (ENSSMAG00000007985)	ENSSMAG00000007968	ENSSMAG00000035645	ENSSMAG00000007951	ENSSMAG00000007914	ENSSMAG00000007891	ENSSMAG00000007800	ENSSMAG00000007784 #26	ENSSMAG00000007762 #22	ENSSMAG00000007733 #19	mknk1 (ENSSMAG00000007711) #16	mob3c (ENSSMAG00000007701) #15	elovl1b (ENSSMAG00000007659)	ENSSMAG00000007643	ptgfr (ENSSMAG00000007633)	st6galnac5b (ENSSMAG00000026889)	ENSSMAG00000007456	ENSSMAG00000007408	ENSSMAG00000007373	tnni3k (ENSSMAG00000007328)	fpgt (ENSSMAG00000007322)	acot11b (ENSSMAG00000007286)	ssbp3b (ENSSMAG00000007250)	dio1 (ENSSMAG00000007191)
Pinecone sodierfish	MODERN SPECIES	18	olfml2ba (ENSMMDG00005011189)	ENSMMDG00005011184	ENSMMDG00005011181	XCR1 (ENSMMDG00005011179)	FYCO1 (ENSMMDG00005011159)	GHRHR (ENSMMDG00005011152)	ENSMMDG00005010932	ENSMMDG00005009760	ENSMMDG00005009533	ENSMMDG00005009462	ENSMMDG00005009386	ENSMMDG00005009361	ENSMMDG00005009318	ENSMMDG00005007840	uqcrh (ENSMMDG00005007825) #26	ENSMMDG00005007798 #22	dmbx1b (ENSMMDG00005007784) #19	mknk1 (ENSMMDG00005005940) #16	mob3c (ENSMMDG00005005876) #15	elovl1b (ENSMMDG00005005862)	ENSMMDG00005005850	btf3l4 (ENSMMDG00005005824)	ptgfr (ENSMMDG00005005817)	st6galnac5b (ENSMMDG00005005805)	ENSMMDG00005005802	SLC44A5 (ENSMMDG00005000774)	ENSMMDG00005000666	erich3 (ENSMMDG00005000656)	tnni3k (ENSMMDG00005000573)	fpgt (ENSMMDG00005000544)	acot11b (ENSMMDG00005000469)
Cod	MODERN SPECIES	3	SELE (ENSGMOG00000015254)	ENSGMOG00000027624	selp (ENSGMOG00000017933)	lmx1a (ENSGMOG00000018009)	ENSGMOG00000018023	atf6 (ENSGMOG00000018033)	ENSGMOG00000018053	ENSGMOG00000031955	ENSGMOG00000028876	ENSGMOG00000031817	ENSGMOG00000027750	ENSGMOG00000018078	ENSGMOG00000018102	ENSGMOG00000018123	ENSGMOG00000018139 #26	ENSGMOG00000018151 #22	ENSGMOG00000030004 #19	mknk1 (ENSGMOG00000018201) #16	mob3c (ENSGMOG00000018227) #15	elovl1b (ENSGMOG00000018234)	ENSGMOG00000030031	btf3l4 (ENSGMOG00000018294)	ptgfr (ENSGMOG00000018301)	ENSGMOG00000025114	ENSGMOG00000029773	ENSGMOG00000018324	ENSGMOG00000018358	erich3 (ENSGMOG00000036306)	tnni3k (ENSGMOG00000018391)	fpgt (ENSGMOG00000025466)	ENSGMOG00000028884
Protacanthopterygii	ANCESTRAL SPECIES	47	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00390000012765 #14	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000159889.b.b.a.b #7	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000160024.d	ENSGT00390000003860.gb #26	ENSGT00940000163316 #22	ENSGT00940000155505.a.b #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b #15	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f	ENSGT00940000154296.b.b	ENSGT01030000234559.a.b	ENSGT00940000157634.c	ENSGT01030000235480	ENSGT00940000156600.f	ENSGT00940000156200.B	ENSGT00530000064485	ENSGT00940000159131	ENSGT00780000122095	ENSGT00390000004404
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	725													ENSGT00950000182879.a.a	ENSGT00960000186850.b.b.b	ENSGT00390000003860.gb #26	ENSGT00940000163316.s #22	ENSGT00940000155505.a.b.f #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b.b #15	ENSGT01050000244838.H.d.d.d	ENSGT00940000154290.a.f.d	ENSGT00940000154296.b.b.a	ENSGT01030000234559.a.b
Huchen	MODERN SPECIES	1717												ENSHHUG00000035135	ENSHHUG00000035111	ENSHHUG00000035082	ENSHHUG00000035077	ENSHHUG00000035046 #22	DMBX1 (ENSHHUG00000035040) #19	sox1a (ENSHHUG00000035035)
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00940000159943.h	ENSGT00390000012765.c #14	ENSGT00950000182916.a.b.a.a.a.a.g.a	ENSGT00940000157668.p	ENSGT00940000155136.kb.b	ENSGT01030000234837.a	ENSGT00940000159889.b.b.a.b.a #7	ENSGT01090000260052.a.b.j.h	ENSGT00940000154044.a.a.q.a.g.b	ENSGT00940000159858.b	ENSGT00940000160024.d.a	ENSGT00940000154573.eb	ENSGT00950000182879.a.a	ENSGT00960000186850.b.b.b	ENSGT00390000003860.gb.h #26	ENSGT00940000163316.s #22	ENSGT00940000155505.a.b.f #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b.b #15	ENSGT01050000244838.H.d.d.d	ENSGT00940000154290.a.f.d	ENSGT00940000154296.b.b.a	ENSGT01030000234559.a.b	ENSGT00940000157634.c.d	ENSGT01030000235480	ENSGT00940000156600.f.d	ENSGT00940000156200.B.d	ENSGT00940000159131.g	ENSGT00390000004404	ENSGT00940000156460.B.e	ENSGT00950000183049.B.u
Salmo	ANCESTRAL SPECIES	9	ENSGT00940000159943.h	ENSGT00390000012765.c #14	ENSGT00950000182916.a.b.a.a.a.a.g.a	ENSGT00940000157668.p	ENSGT00940000155136.kb.b	ENSGT01030000234837.a	ENSGT00940000159889.b.b.a.b.a #7	ENSGT01090000260052.a.b.j.h	ENSGT00940000154044.a.a.q.a.g.b	ENSGT00940000159858.b	ENSGT00940000160024.d.a	ENSGT00940000154573.eb	ENSGT00950000182879.a.a	ENSGT00960000186850.b.b.b	ENSGT00390000003860.gb.h #26	ENSGT00940000163316.s #22	ENSGT00940000155505.a.b.f #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b.b #15	ENSGT01050000244838.H.d.d.d	ENSGT00940000154290.a.f.d	ENSGT00940000154296.b.b.a	ENSGT01030000234559.a.b	ENSGT00940000157634.c.d	ENSGT00940000156600.f.d	ENSGT00940000159131.g	ENSGT00780000122095.d	ENSGT00390000004404	ENSGT00940000156460.B.e	ENSGT00950000183049.B.u	ENSGT00940000154482.b.a.p
River trout	MODERN SPECIES	8	ENSSTUG00000040526	atpaf1 (ENSSTUG00000040488) #14	nfia (ENSSTUG00000040478)	tm2d1 (ENSSTUG00000040452)	ENSSTUG00000040445	PATJ (ENSSTUG00000040337)	ENSSTUG00000040325	tal1 (ENSSTUG00000040318) #7	XCR1 (ENSSTUG00000040311)	FYCO1 (ENSSTUG00000040197)	ENSSTUG00000040130	ENSSTUG00000040115	ENSSTUG00000040102	ENSSTUG00000040083	ENSSTUG00000040058	ENSSTUG00000040004 #22	dmbx1b (ENSSTUG00000039987) #19	mknk1 (ENSSTUG00000039874) #16	mob3c (ENSSTUG00000039847) #15	elovl1b (ENSSTUG00000039827)	ENSSTUG00000039790	btf3l4 (ENSSTUG00000039763)	ptgfr (ENSSTUG00000039761)	ST6GALNAC5 (ENSSTUG00000039756)	ENSSTUG00000039343	tnni3k (ENSSTUG00000039228)	fpgt (ENSSTUG00000039178)	ENSSTUG00000039171	acot11b (ENSSTUG00000038359)	ssbp3b (ENSSTUG00000038301)	dio1 (ENSSTUG00000038292)
Atlantic salmon	MODERN SPECIES	7	atpaf1 (ENSSSAG00000096927) #14	nfia (ENSSSAG00000096019)	ENSSSAG00000087807	tm2d1 (ENSSSAG00000121028)	PATJ (ENSSSAG00000043932)	ENSSSAG00000088981	ENSSSAG00000044276	ENSSSAG00000044291	tal1 (ENSSSAG00000044296) #7	ENSSSAG00000096789	ENSSSAG00000044315	ENSSSAG00000044685	ENSSSAG00000044727	ENSSSAG00000044739	QCR6 (ENSSSAG00000044798) #26	ENSSSAG00000044838 #22	ENSSSAG00000092908 #19	mknk1 (ENSSSAG00000006104) #16	elovl1b (ENSSSAG00000006209)	ENSSSAG00000006289	btf3l4 (ENSSSAG00000006729)	ptgfr (ENSSSAG00000006785)	ENSSSAG00000006790	ENSSSAG00000006944	ENSSSAG00000103590	tnni3k (ENSSSAG00000042505)	ENSSSAG00000043500	acot11b (ENSSSAG00000043557)	ssbp3b (ENSSSAG00000044037)	ENSSSAG00000044101	ENSSSAG00000044129
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00940000159943.h	ENSGT00390000012765.c #14	ENSGT00950000182916.a.b.a.a.a.a.g.a	ENSGT00940000157668.p	ENSGT00940000155136.kb.b	ENSGT01030000234837.a	ENSGT00940000159889.b.b.a.b.a #7	ENSGT01090000260052.a.b.j.h	ENSGT00940000154044.a.a.q.a.g.b	ENSGT00940000159858.b	ENSGT00940000160024.d.a	ENSGT00940000154573.eb	ENSGT00950000182879.a.a	ENSGT00960000186850.b.b.b	ENSGT00390000003860.gb.h #26	ENSGT00940000163316.s #22	ENSGT00940000155505.a.b.f #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b.b #15	ENSGT01050000244838.H.d.d.d	ENSGT00940000154290.a.f.d	ENSGT00940000154296.b.b.a	ENSGT01030000234559.a.b	ENSGT01030000236401	ENSGT00940000157634.c.d	ENSGT01030000235480	ENSGT00940000156600.f.d	ENSGT00940000156200.B.d	ENSGT00940000159131.g	ENSGT00390000004404.i.a	ENSGT00940000156460.B.e
Rainbow trout	MODERN SPECIES		nfia (ENSOMYG00000004657)	tm2d1 (ENSOMYG00000004606)	ENSOMYG00000064297	PATJ (ENSOMYG00000004583)	ENSOMYG00000071077	tal1 (ENSOMYG00000004513) #7	ENSOMYG00000004503	ENSOMYG00000060476	ENSOMYG00000004435	ENSOMYG00000076441	ENSOMYG00000004261	ENSOMYG00000004120	ENSOMYG00000004113	ENSOMYG00000004065	ENSOMYG00000004051 #26	ENSOMYG00000003997 #22	ENSOMYG00000060298 #19	ENSOMYG00000063922	ENSOMYG00000055131	mknk1 (ENSOMYG00000003938) #16	mob3c (ENSOMYG00000003719) #15	elovl1b (ENSOMYG00000003665)	ENSOMYG00000003628	btf3l4 (ENSOMYG00000003494)	ptgfr (ENSOMYG00000003308)	ENSOMYG00000062055	st6galnac5b (ENSOMYG00000064563)	ENSOMYG00000003280	ENSOMYG00000003237	ENSOMYG00000003219	tnni3k (ENSOMYG00000003140)
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000159943.h	ENSGT00390000012765.c #14	ENSGT00950000182916.a.b.a.a.a.a.g.a	ENSGT00940000155136.kb.b	ENSGT01030000234837.a	ENSGT00940000159889.b.b.a.b.a #7	ENSGT01090000260052.a.b.j.h	ENSGT00940000154044.a.a.q.a.g.b	ENSGT00940000159858.b	ENSGT00940000160024.d.a	ENSGT00940000154573.eb	ENSGT00950000182879.a.a	ENSGT00960000186850.b.b.b	ENSGT00390000003860.gb.h #26	ENSGT00940000163316.s #22	ENSGT00940000155505.a.b.f #19	ENSGT00940000154587.a.a #16	ENSGT01050000244898.a.a.b.b #15	ENSGT01050000244838.H.d.d.d	ENSGT00940000154290.a.f.d	ENSGT00940000154296.b.b.a	ENSGT01030000234559.a.b	ENSGT01030000236401	ENSGT00940000157634.c.d	ENSGT01030000235480	ENSGT00940000156600.f.d	ENSGT00940000156200.B.d	ENSGT00940000159131.g	ENSGT00390000004404.i.a	ENSGT00940000156460.B.e
Coho salmon	MODERN SPECIES	24	ENSOKIG00005003081	atpaf1 (ENSOKIG00005003064) #14	nfia (ENSOKIG00005003046)	ENSOKIG00005003031	ENSOKIG00005003021	ENSOKIG00005002987	tal1 (ENSOKIG00005002969) #7	pdzk1ip1 (ENSOKIG00005002961) #8	XCR1 (ENSOKIG00005002959)	FYCO1 (ENSOKIG00005002944)	ENSOKIG00005002766	ENSOKIG00005002728	ENSOKIG00005002721	ENSOKIG00005002710	ENSOKIG00005002693 #26	ENSOKIG00005002674 #22	dmbx1b (ENSOKIG00005002662) #19	mknk1 (ENSOKIG00005002521) #16	mob3c (ENSOKIG00005002465) #15	elovl1b (ENSOKIG00005002455)	ENSOKIG00005002439	btf3l4 (ENSOKIG00005002416)	ptgfr (ENSOKIG00005002403)	ENSOKIG00005002398	st6galnac5b (ENSOKIG00005002384)	ENSOKIG00005002368	ENSOKIG00005002039	ENSOKIG00005001882	tnni3k (ENSOKIG00005001826)	ENSOKIG00005001807	acot11b (ENSOKIG00005001717)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	30	axdnd1 (ENSOTSG00005032891)	ENSOTSG00005032890	ENSOTSG00005032889	ENSOTSG00005032887	atpaf1 (ENSOTSG00005032885) #14	nfia (ENSOTSG00005032881)	ENSOTSG00005032876	ENSOTSG00005032871	tal1 (ENSOTSG00005032870) #7	XCR1 (ENSOTSG00005032868)	FYCO1 (ENSOTSG00005032863)	ENSOTSG00005032857	ENSOTSG00005032856	ENSOTSG00005032854	ENSOTSG00005032853	ENSOTSG00005032852 #22	DMBX1 (ENSOTSG00005032850) #19	mknk1 (ENSOTSG00005032811) #16	mob3c (ENSOTSG00005032810) #15	elovl1b (ENSOTSG00005032808)	ENSOTSG00005032807	btf3l4 (ENSOTSG00005032806)	ptgfr (ENSOTSG00005032805)	st6galnac5b (ENSOTSG00005032804)	ENSOTSG00005032803	ENSOTSG00005032802	ENSOTSG00005029376	ENSOTSG00005029356	tnni3k (ENSOTSG00005029355)	ENSOTSG00005029354	acot11b (ENSOTSG00005029353)
Chinook salmon	MODERN SPECIES	2929								ENSOTSG00005029989	tal1 (ENSOTSG00005029988) #7	XCR1 (ENSOTSG00005029987)	FYCO1 (ENSOTSG00005029929)	ENSOTSG00005029927	ENSOTSG00005029926	ENSOTSG00005029925	ENSOTSG00005029924	ENSOTSG00005029922 #22	DMBX1 (ENSOTSG00005029921) #19	mknk1 (ENSOTSG00005029916) #16	mob3c (ENSOTSG00005029913) #15	elovl1b (ENSOTSG00005029910)	ENSOTSG00005029909	btf3l4 (ENSOTSG00005029908)	ptgfr (ENSOTSG00005029905)	st6galnac5b (ENSOTSG00005029904)	ENSOTSG00005029903	ENSOTSG00005024171	ENSOTSG00005024149	tnni3k (ENSOTSG00005024129)	ENSOTSG00005024126	acot11b (ENSOTSG00005024093)	ssbp3b (ENSOTSG00005024067)
Salmoninae	ANCESTRAL SPECIES	41	ENSGT00940000155026.d	ENSGT00940000159943.g	ENSGT00390000012765.d #14	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.g.b	ENSGT00940000157668.o	ENSGT00940000155136.kb.a	ENSGT01030000234837.b	ENSGT00940000159889.b.b.a.b.b #7	ENSGT01090000260052.a.b.j.g	ENSGT00940000154044.a.a.q.a.g.a	ENSGT00940000159858.a	ENSGT00940000164218	ENSGT00940000160024.d.b	ENSGT00960000186850.b.b.a	ENSGT00940000163316.t #22	ENSGT00940000155505.a.b.e #19	ENSGT00990000210619	ENSGT01050000244898.a.a.b.a #15	ENSGT01050000244838.H.d.d.c	ENSGT00940000154290.a.f.c	ENSGT00940000154296.b.b.b	ENSGT00940000157634.c.c	ENSGT01030000235480	ENSGT00940000156600.f.c	ENSGT00940000156200.B.c	ENSGT00530000064485	ENSGT00780000122095	ENSGT01010000229453	ENSGT00940000156460.B.f	ENSGT00950000183049.B.v
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00940000159943.g	ENSGT00390000012765.d #14	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.g.b	ENSGT00940000157668.o	ENSGT00940000155136.kb.a	ENSGT01030000234837.b	ENSGT00940000159889.b.b.a.b.b #7	ENSGT01090000260052.a.b.j.g	ENSGT00940000154044.a.a.q.a.g.a	ENSGT00940000159858.a	ENSGT00940000164218	ENSGT00940000160024.d.b	ENSGT00960000186850.b.b.a	ENSGT00390000003860.gb.g #26	ENSGT00940000163316.t #22	ENSGT00940000155505.a.b.e #19	ENSGT00990000210619	ENSGT01050000244898.a.a.b.a #15	ENSGT01050000244838.H.d.d.c	ENSGT00940000154290.a.f.c	ENSGT00940000154296.b.b.b	ENSGT00940000157634.c.c	ENSGT00940000156600.f.c	ENSGT00940000156200.B.c	ENSGT00530000064485	ENSGT00780000122095	ENSGT01010000229453	ENSGT00940000156460.B.f	ENSGT00950000183049.B.v	ENSGT00970000198027
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000159943.g	ENSGT00390000012765.d #14	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.g.b	ENSGT00940000157668.o	ENSGT00940000155136.kb.a	ENSGT01030000234837.b	ENSGT00940000159889.b.b.a.b.b #7	ENSGT01090000260052.a.b.j.g	ENSGT00940000154044.a.a.q.a.g.a	ENSGT00940000159858.a	ENSGT00940000164218	ENSGT00940000160024.d.b	ENSGT00960000186850.b.b.a	ENSGT00390000003860.gb.g #26	ENSGT00940000163316.t #22	ENSGT00940000155505.a.b.e #19	ENSGT00990000210619	ENSGT01050000244898.a.a.b.a #15	ENSGT01050000244838.H.d.d.c	ENSGT00940000154290.a.f.c	ENSGT00940000154296.b.b.b	ENSGT00940000157634.c.c	ENSGT00940000156600.f.c	ENSGT00940000156200.B.c	ENSGT00530000064485	ENSGT00780000122095	ENSGT00940000156460.B.f.b	ENSGT00940000156460.B.f.a.a	ENSGT00950000183049.B.v	ENSGT00970000198027
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00390000012765.d #14	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.g.b	ENSGT00940000157668.o	ENSGT00940000155136.kb.a	ENSGT01030000234837.b	ENSGT00940000159889.b.b.a.b.b #7	ENSGT01090000260052.a.b.j.g	ENSGT00940000154044.a.a.q.a.g.a	ENSGT00940000159858.a	ENSGT00940000164218	ENSGT00940000167711.a.b	ENSGT00940000160024.d.b	ENSGT00960000186850.b.b.a	ENSGT00390000003860.gb.g #26	ENSGT00940000163316.t #22	ENSGT00940000155505.a.b.e #19	ENSGT00990000210619	ENSGT01050000244898.a.a.b.a #15	ENSGT01050000244838.H.d.d.c	ENSGT00940000154290.a.f.c	ENSGT00940000154296.b.b.b	ENSGT00940000157634.c.c	ENSGT00940000156600.f.c	ENSGT00940000156200.B.c	ENSGT00530000064485	ENSGT00780000122095	ENSGT00940000156460.B.f.b	ENSGT00940000156460.B.f.a.a	ENSGT00950000183049.B.v	ENSGT00970000198027
Coho salmon	MODERN SPECIES	4	fam163ab (ENSOKIG00005004740)	nphs2 (ENSOKIG00005004747)	nrd1b (ENSOKIG00005004920)	ENSOKIG00005007957	atpaf1 (ENSOKIG00005007980) #14	frem1b (ENSOKIG00005008055)	nfia (ENSOKIG00005008673)	tm2d1 (ENSOKIG00005009114)	PATJ (ENSOKIG00005009159)	ENSOKIG00005009581	tal1 (ENSOKIG00005009587) #7	ENSOKIG00005009592	FYCO1 (ENSOKIG00005009620)	ENSOKIG00005009743	ENSOKIG00005009754	ENSOKIG00005009771 #22	DMBX1 (ENSOKIG00005009864) #19	ENSOKIG00005009867	mob3c (ENSOKIG00005009874) #15	elovl1b (ENSOKIG00005009886)	ENSOKIG00005009899	btf3l4 (ENSOKIG00005009916)	st6galnac5b (ENSOKIG00005009942)	ENSOKIG00005010042	ENSOKIG00005011526	ENSOKIG00005011551	fpgt (ENSOKIG00005011573)	ENSOKIG00005011605	ENSOKIG00005011638	acot11b (ENSOKIG00005011659)	ssbp3b (ENSOKIG00005011706)
Chinook salmon	MODERN SPECIES	29	nrd1b (ENSOTSG00005008839)	ENSOTSG00005008831	atpaf1 (ENSOTSG00005008829) #14	frem1b (ENSOTSG00005008828)	nfia (ENSOTSG00005008780)	tm2d1 (ENSOTSG00005008769)	PATJ (ENSOTSG00005008768)	ENSOTSG00005008767	tal1 (ENSOTSG00005008765) #7	XCR1 (ENSOTSG00005008764)	FYCO1 (ENSOTSG00005008760)	ENSOTSG00005008633	ENSOTSG00005008632	ENSOTSG00005008631	uqcrh (ENSOTSG00005008630) #26	ENSOTSG00005047649 #22	DMBX1 (ENSOTSG00005047648) #19	mob3c (ENSOTSG00005047646) #15	elovl1b (ENSOTSG00005047645)	ENSOTSG00005047644	btf3l4 (ENSOTSG00005047643)	st6galnac5b (ENSOTSG00005047642)	SLC44A5 (ENSOTSG00005047580)	ENSOTSG00005047568	ENSOTSG00005047566	fpgt (ENSOTSG00005047565)	acot11b (ENSOTSG00005047560)	ssbp3b (ENSOTSG00005047558)	ENSOTSG00005047556	dio1 (ENSOTSG00005047555)	ENSOTSG00005047554
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000059299	atpaf1 (ENSOMYG00000022632) #14	frem1b (ENSOMYG00000022312)	ENSOMYG00000077049	nfia (ENSOMYG00000022032)	ENSOMYG00000021959	tm2d1 (ENSOMYG00000021950)	PATJ (ENSOMYG00000021761)	ENSOMYG00000051891	tal1 (ENSOMYG00000021673) #7	ENSOMYG00000021666	ENSOMYG00000021645	ENSOMYG00000021508	ENSOMYG00000050123	ENSOMYG00000021435	ENSOMYG00000021400 #22	ENSOMYG00000021326 #19	ENSOMYG00000068498	ENSOMYG00000021316	mob3c (ENSOMYG00000021309) #15	elovl1b (ENSOMYG00000021298)	ENSOMYG00000021284	ENSOMYG00000072239	btf3l4 (ENSOMYG00000021272)	st6galnac5b (ENSOMYG00000021256)	ENSOMYG00000020116	ENSOMYG00000019990	ENSOMYG00000019980	ENSOMYG00000069721	fpgt (ENSOMYG00000019972)	ENSOMYG00000013367
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000155026.d	ENSGT00940000159943.g	ENSGT00390000012765.d #14	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.g.b	ENSGT00940000157668.o	ENSGT00940000155136.kb.a	ENSGT01030000234837.b	ENSGT00940000159889.b.b.a.b.b #7	ENSGT01090000260052.a.b.j.g	ENSGT00940000154044.a.a.q.a.g.a	ENSGT00940000159858.a	ENSGT00940000164218	ENSGT00940000160024.d.b	ENSGT00390000003860.gb.g #26	ENSGT00940000163316.t #22	ENSGT00940000155505.a.b.e #19	ENSGT00990000210619	ENSGT01050000244898.a.a.b.a #15	ENSGT01050000244838.H.d.d.c	ENSGT00940000154290.a.f.c	ENSGT00940000154296.b.b.b	ENSGT00940000157634.c.c	ENSGT01030000235480	ENSGT00940000156600.f.c	ENSGT00940000156200.B.c	ENSGT00530000064485	ENSGT00780000122095.c	ENSGT00950000183049.B.v	ENSGT00970000198027	ENSGT00940000154482.b.a.o.b
River trout	MODERN SPECIES	14	nrd1b (ENSSTUG00000009867)	ENSSTUG00000009788	atpaf1 (ENSSTUG00000009769) #14	frem1b (ENSSTUG00000009321)	nfia (ENSSTUG00000009175)	tm2d1 (ENSSTUG00000009125)	PATJ (ENSSTUG00000009038)	ENSSTUG00000009018	tal1 (ENSSTUG00000009006) #7	XCR1 (ENSSTUG00000009001)	FYCO1 (ENSSTUG00000008811)	GHRHR (ENSSTUG00000008775)	ENSSTUG00000008760	ENSSTUG00000008748	ENSSTUG00000008723	ENSSTUG00000008654 #22	DMBX1 (ENSSTUG00000008640) #19	ENSSTUG00000008632	mob3c (ENSSTUG00000008625) #15	elovl1b (ENSSTUG00000008612)	ENSSTUG00000008571	btf3l4 (ENSSTUG00000008547)	ENSSTUG00000008530	st6galnac5b (ENSSTUG00000008519)	SLC44A5 (ENSSTUG00000007227)	ENSSTUG00000007178	ENSSTUG00000007155	fpgt (ENSSTUG00000007143)	ENSSTUG00000007138	ENSSTUG00000007124	ssbp3b (ENSSTUG00000007084)
Atlantic salmon	MODERN SPECIES	1	nphs2 (ENSSSAG00000081931)	nrd1b (ENSSSAG00000075825)	atpaf1 (ENSSSAG00000075779) #14	frem1b (ENSSSAG00000075725)	nfia (ENSSSAG00000085371)	tm2d1 (ENSSSAG00000108257)	PATJ (ENSSSAG00000075664)	tal1 (ENSSSAG00000075661) #7	ENSSSAG00000107070	ENSSSAG00000075658	ENSSSAG00000075646	ENSSSAG00000075403	ENSSSAG00000075383	ENSSSAG00000075376	QCR6 (ENSSSAG00000075360) #26	ENSSSAG00000075343 #22	ENSSSAG00000075333 #19	ENSSSAG00000109386	ENSSSAG00000107967	mob3c (ENSSSAG00000006189) #15	elovl1b (ENSSSAG00000075310)	ENSSSAG00000075268	btf3l4 (ENSSSAG00000075256)	st6galnac5b (ENSSSAG00000075252)	ENSSSAG00000075251	ENSSSAG00000075138	ENSSSAG00000075086	ENSSSAG00000075074	fpgt (ENSSSAG00000075071)	ssbp3b (ENSSSAG00000075057)	ENSSSAG00000086770
Huchen	MODERN SPECIES	540			tm2d1 (ENSHHUG00000048210)	ENSHHUG00000048215	ENSHHUG00000048288	ENSHHUG00000048289	ENSHHUG00000048291	tal1 (ENSHHUG00000048292) #7	XCR1 (ENSHHUG00000048293)	ENSHHUG00000048294	FYCO1 (ENSHHUG00000048295)	ENSHHUG00000048297	ENSHHUG00000048360	ENSHHUG00000048381	ENSHHUG00000048386	ENSHHUG00000048408 #22	dmbx1b (ENSHHUG00000048416) #19	ENSHHUG00000048433	mob3c (ENSHHUG00000048438) #15	elovl1b (ENSHHUG00000048440)	ENSHHUG00000048465	btf3l4 (ENSHHUG00000048495)
Northern pike	MODERN SPECIES	7	APBA3 (ENSELUG00000012037)	ABCA7 (ENSELUG00000011676)	ABCA7 (ENSELUG00000034000)	r3hdm4 (ENSELUG00000010468)	ARID3A (ENSELUG00000010444)	ENSELUG00000010399	ENSELUG00000010365	ENSELUG00000029723	ndufs7 (ENSELUG00000001267)	gamt (ENSELUG00000025744)	dazap1 (ENSELUG00000010286)	ENSELUG00000010227	ENSELUG00000024974	kank3 (ENSELUG00000010197)	cyp2v1 (ENSELUG00000010129)	ENSELUG00000010085 #22	dmbx1b (ENSELUG00000009957) #19	ENSELUG00000009921	ctbs (ENSELUG00000009902)	slc9a7 (ENSELUG00000009857)	CHST7 (ENSELUG00000009754)	tubgcp5 (ENSELUG00000009725)	cyfip1 (ENSELUG00000001279)	ENSELUG00000009609	nipa2 (ENSELUG00000009595)	nipa1 (ENSELUG00000029920)	HERC2 (ENSELUG00000009492)	OCA2 (ENSELUG00000009431)	GABRG3 (ENSELUG00000009399)	GABRA5 (ENSELUG00000009373)	GABRB3 (ENSELUG00000009339)
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00940000163316 #22
P. kingsleyae	MODERN SPECIES	85												hyi (ENSPKIG00000016026)	med8 (ENSPKIG00000016056)	ENSPKIG00000016091	rad54l (ENSPKIG00000016172) #28	ENSPKIG00000016208 #22	ENSPKIG00000016231	ubtfl (ENSPKIG00000016248)	slc4a2b (ENSPKIG00000016349)	ENSPKIG00000016510	ENSPKIG00000016606	abcf2b (ENSPKIG00000016624)	CHPF2 (ENSPKIG00000016657)	SMARCD3 (ENSPKIG00000016701)	ENSPKIG00000016787	ENSPKIG00000016807	ENSPKIG00000016855	NFX1 (ENSPKIG00000016899)	ASAP1 (ENSPKIG00000017059)	eef1a1l3 (ENSPKIG00000017246)	ENSPKIG00000017320
Spotted gar	MODERN SPECIES	648	ENSLOCG00000004452	ENSLOCG00000004419	med8 (ENSLOCG00000004404)	SZT2 (ENSLOCG00000004364)	hyi (ENSLOCG00000004345)	ptprfb (ENSLOCG00000004311)	KDM4A (ENSLOCG00000004275)	st3gal3b (ENSLOCG00000004247)	ENSLOCG00000004232	ptger4c (ENSLOCG00000004217)	pif1 (ENSLOCG00000004184)	rad54l (ENSLOCG00000004144) #28	LRRC41 (ENSLOCG00000004116) #27	uqcrh (ENSLOCG00000004105) #26	nsun4 (ENSLOCG00000004075) #25	ENSLOCG00000004038 #22	dmbx1b (ENSLOCG00000004020) #19	mknk1 (ENSLOCG00000003998) #16	mob3c (ENSLOCG00000003969) #15	elovl1a (ENSLOCG00000003952)	cdc20 (ENSLOCG00000003921)	CC2D1B (ENSLOCG00000003904)	ZFYVE9 (ENSLOCG00000003886)	btf3l4 (ENSLOCG00000003871)	txndc12 (ENSLOCG00000003852)	ptgfr (ENSLOCG00000003835)	gipc2 (ENSLOCG00000003819)	dnajb4 (ENSLOCG00000003800)	slc25a24l (ENSLOCG00000003781)	fubp1 (ENSLOCG00000003745)	nexn (ENSLOCG00000003732)
Reedfish	MODERN SPECIES	1	med8 (ENSECRG00000009978)	ENSECRG00000009972	SZT2 (ENSECRG00000009935)	hyi (ENSECRG00000009902)	ENSECRG00000009894	ptprfb (ENSECRG00000009733)	KDM4A (ENSECRG00000009628)	st3gal3b (ENSECRG00000009602)	ENSECRG00000009516	ptger4c (ENSECRG00000020211)	pif1 (ENSECRG00000020181)	rad54l (ENSECRG00000020134) #28	LRRC41 (ENSECRG00000020100) #27	uqcrh (ENSECRG00000020081) #26	nsun4 (ENSECRG00000020056) #25	ENSECRG00000020025 #22	dmbx1b (ENSECRG00000019994) #19	mknk1 (ENSECRG00000019960) #16	mob3c (ENSECRG00000019929) #15	elovl1a (ENSECRG00000019902)	cdc20 (ENSECRG00000019867)	CC2D1B (ENSECRG00000019819)	ZFYVE9 (ENSECRG00000019771)	btf3l4 (ENSECRG00000019740)	dr1 (ENSECRG00000019722)	zgc:109982 (ENSECRG00000019676)	scinla (ENSECRG00000019612)	ccdc18 (ENSECRG00000019536)	mtf2 (ENSECRG00000019484)	dipk1aa (ENSECRG00000019453)	rpl5b (ENSECRG00000019410)
Elephant shark	MODERN SPECIES	1559	selenop2 (ENSCMIG00000008824)	USP24 (ENSCMIG00000008770)	PCSK9 (ENSCMIG00000008740)	bsnd (ENSCMIG00000008728)	ENSCMIG00000008726	dhcr24 (ENSCMIG00000008718)	ENSCMIG00000008715	TTC22 (ENSCMIG00000008711)	ENSCMIG00000008710	pars2 (ENSCMIG00000008709)	ttc4 (ENSCMIG00000008704)	ENSCMIG00000008700	pigb (ENSCMIG00000008698)	uqcrh (ENSCMIG00000008694) #26	nsun4 (ENSCMIG00000008691) #25	ENSCMIG00000008683 #22