Chordata	ANCESTRAL SPECIES																	ENSGT00940000156574.C #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000156574.C #22
Gnathostomata	ANCESTRAL SPECIES	968														ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000156574.C #22
Euteleostomi	ANCESTRAL SPECIES	484												ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24
Sarcopterygii	ANCESTRAL SPECIES	61	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000162463	ENSGT00950000183205.a	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00390000013180	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164715	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000159302
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000162463	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.a	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164715	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000159302	ENSGT00940000160439
Amniota	ANCESTRAL SPECIES	20	ENSGT00940000160974.b	ENSGT00940000162463	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.a	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164715	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT00940000158627
Mammalia	ANCESTRAL SPECIES	83	ENSGT00940000161468	ENSGT00390000011766	ENSGT00390000001289.a	ENSGT00940000161522	ENSGT00940000160334	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00940000163435	ENSGT00390000010641 #8	ENSGT00940000163889 #10	ENSGT00940000168541	ENSGT00940000155904 #13	ENSGT00530000063359.B #16	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28
Theria	ANCESTRAL SPECIES	8	ENSGT00940000161468	ENSGT00390000011766	ENSGT00390000001289.a	ENSGT00940000161522	ENSGT00940000160334	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000163889 #10	ENSGT00940000168541	ENSGT00940000155904 #13	ENSGT00530000063359.B #16	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000164125	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000163889 #10	ENSGT00940000163374	ENSGT01100000264273	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000163889 #10	ENSGT00940000163374	ENSGT01100000264273	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Primates	ANCESTRAL SPECIES		ENSGT00940000164125	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT01030000240235	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00910000147590 #37	ENSGT00390000009426 #36	ENSGT00940000160601
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00400000022774 #33	ENSGT00940000157816 #35	ENSGT00910000147590 #37	ENSGT00390000009426 #36
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00400000022774 #33	ENSGT00940000157816 #35	ENSGT00910000147590 #37	ENSGT00390000009426 #36	ENSGT00940000160601
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00400000022774 #33	ENSGT00940000157816 #35	ENSGT00910000147590 #37	ENSGT00390000009426 #36	ENSGT00940000160601
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	2	GSTP1 (ENSGGOG00000013849) #7	NDUFV1 (ENSGGOG00000011943) #8	ENSGGOG00000023590 #9	NUDT8 (ENSGGOG00000011953) #10	TBX10 (ENSGGOG00000011961) #11	ACY3 (ENSGGOG00000011979) #12	ALDH3B2 (ENSGGOG00000015729) #13	ENSGGOG00000038633 #14	ENSGGOG00000003630 #15	ENSGGOG00000025959 #16	ALDH3B1 (ENSGGOG00000004995) #17	NDUFS8 (ENSGGOG00000005001) #18	TCIRG1 (ENSGGOG00000005005) #19	KMT5B (ENSGGOG00000004122) #20	C11orf24 (ENSGGOG00000027226) #21	LRP5 (ENSGGOG00000000038) #22	PPP6R3 (ENSGGOG00000006609) #23	GAL (ENSGGOG00000000252) #24	TESMIN (ENSGGOG00000001666) #25	ENSGGOG00000001670 #26	MRPL21 (ENSGGOG00000012124) #27	IGHMBP2 (ENSGGOG00000012131) #28	MRGPRD (ENSGGOG00000027003) #29	MRGPRF (ENSGGOG00000005578) #30	TPCN2 (ENSGGOG00000010594) #31	SMIM38 (ENSGGOG00000038283) #32	MYEOV (ENSGGOG00000014636) #33	ENSGGOG00000003377 #34	ENSGGOG00000037803 #35	ENSGGOG00000002858 #36	ENSGGOG00000039153 #37
Gorilla	MODERN SPECIES	13	TTC28 (ENSGGOG00000034936)	PITPNB (ENSGGOG00000005061)	MN1 (ENSGGOG00000004428)	ENSGGOG00000040415	ENSGGOG00000012894	CRYBA4 (ENSGGOG00000026014)	CRYBB1 (ENSGGOG00000013639)	TPST2 (ENSGGOG00000005006)	TFIP11 (ENSGGOG00000004999)	SRRD (ENSGGOG00000004994)	HPS4 (ENSGGOG00000004984)	ASPHD2 (ENSGGOG00000004979)	SEZ6L (ENSGGOG00000004972)	MYO18B (ENSGGOG00000000353)	GRK3 (ENSGGOG00000004757)	ENSGGOG00000006219 ##22	ENSGGOG00000042208	ENSGGOG00000006228	CRYBB3 (ENSGGOG00000039263)	KIAA1671 (ENSGGOG00000011414)	LHFPL7 (ENSGGOG00000028354)	SGSM1 (ENSGGOG00000013936)	PIWIL3 (ENSGGOG00000015492)	ENSGGOG00000037309	ENSGGOG00000038778	ENSGGOG00000041649	ENSGGOG00000000999	LRRC75B (ENSGGOG00000008038)	SNRPD3 (ENSGGOG00000015640)	ENSGGOG00000039330	ENSGGOG00000015635
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00400000022774 #33	ENSGT00940000157816 #35	ENSGT00910000147590 #37	ENSGT00390000009426 #36	ENSGT00940000160601
Human	MODERN SPECIES	2	CDK2AP2 (ENSG00000167797)	CABP2 (ENSG00000167791)	GSTP1 (ENSG00000084207) #7	NDUFV1 (ENSG00000167792) #8	NUDT8 (ENSG00000167799) #10	TBX10 (ENSG00000167800) #11	ACY3 (ENSG00000132744) #12	ALDH3B2 (ENSG00000132746) #13	UNC93B1 (ENSG00000110057) #16	ALDH3B1 (ENSG00000006534) #17	NDUFS8 (ENSG00000110717) #18	TCIRG1 (ENSG00000110719) #19	CHKA (ENSG00000110721)	KMT5B (ENSG00000110066) #20	C11orf24 (ENSG00000171067) #21	LRP5 (ENSG00000162337) #22	PPP6R3 (ENSG00000110075) #23	GAL (ENSG00000069482) #24	TESMIN (ENSG00000132749) #25	CPT1A (ENSG00000110090) #26	MRPL21 (ENSG00000197345) #27	IGHMBP2 (ENSG00000132740) #28	MRGPRD (ENSG00000172938) #29	MRGPRF (ENSG00000172935) #30	TPCN2 (ENSG00000162341) #31	SMIM38 (ENSG00000284713) #32	MYEOV (ENSG00000172927) #33	CCND1 (ENSG00000110092) #35	LTO1 (ENSG00000149716) #36	FGF19 (ENSG00000162344)	FGF4 (ENSG00000075388)
Pan	ANCESTRAL SPECIES	1	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00390000005254.j #14	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00910000148520	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00400000022774 #33	ENSGT00950000182857.a.a.b.a.r.a.a.a.a.a.a ##34	ENSGT00910000148731	ENSGT00940000157816 #35	ENSGT00910000147590 #37
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	2	NDUFV1 (ENSPTRG00000003969) #8	DOC2G (ENSPTRG00000052755) #9	NUDT8 (ENSPTRG00000003971) #10	TBX10 (ENSPTRG00000003972) #11	ACY3 (ENSPTRG00000003973) #12	ALDH3B2 (ENSPTRG00000003974) #13	ENSPTRG00000044434 #14	UNC93B1 (ENSPTRG00000003975) #16	ALDH3B1 (ENSPTRG00000051435) #17	NDUFS8 (ENSPTRG00000003978) #18	TCIRG1 (ENSPTRG00000003979) #19	CHKA (ENSPTRG00000003980)	ENSPTRG00000051044	KMT5B (ENSPTRG00000003981) #20	C11H11orf24 (ENSPTRG00000003982) #21	LRP5 (ENSPTRG00000003983) #22	PPP6R3 (ENSPTRG00000003984) #23	GAL (ENSPTRG00000003985) #24	TESMIN (ENSPTRG00000003986) #25	CPT1A (ENSPTRG00000003987) #26	MRPL21 (ENSPTRG00000003988) #27	IGHMBP2 (ENSPTRG00000003989) #28	MRGPRD (ENSPTRG00000003990) #29	MRGPRF (ENSPTRG00000003991) #30	TPCN2 (ENSPTRG00000003992) #31	SMIM38 (ENSPTRG00000049784) #32	MYEOV (ENSPTRG00000003994) #33	ENSPTRG00000044016 ##34	ENSPTRG00000046997	ENSPTRG00000051585	CCND1 (ENSPTRG00000052519) #35
Chimpanzee	MODERN SPECIES	13	ENSPTRG00000051248	CRYBA4 (ENSPTRG00000024105)	CRYBB1 (ENSPTRG00000014199)	ENSPTRG00000050599	TPST2 (ENSPTRG00000014197)	TFIP11 (ENSPTRG00000014196)	SRRD (ENSPTRG00000014195)	HPS4 (ENSPTRG00000014194)	ASPHD2 (ENSPTRG00000014193)	SEZ6L (ENSPTRG00000014192)	MYO18B (ENSPTRG00000046234)	ENSPTRG00000044224	GRK3 (ENSPTRG00000014187)	CRYBB2 (ENSPTRG00000014185)	ENSPTRG00000052579	LRP5L (ENSPTRG00000014186) #22	ENSPTRG00000048785	ENSPTRG00000050238	CRYBB3 (ENSPTRG00000014184)	KIAA1671 (ENSPTRG00000014183)	LHFPL7 (ENSPTRG00000029472)	SGSM1 (ENSPTRG00000014181)	PIWIL3 (ENSPTRG00000014180)	ENSPTRG00000044840	LRRC75B (ENSPTRG00000014178)	ENSPTRG00000040730	SNRPD3 (ENSPTRG00000014176)	ENSPTRG00000043284	GUCD1 (ENSPTRG00000014175)	UPB1 (ENSPTRG00000014174)	ADORA2A (ENSPTRG00000014173)
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	2	GSTP1 (ENSPPAG00000043169) #7	NDUFV1 (ENSPPAG00000043544) #8	NUDT8 (ENSPPAG00000043158) #10	TBX10 (ENSPPAG00000030171) #11	ACY3 (ENSPPAG00000031478) #12	ALDH3B2 (ENSPPAG00000032213) #13	ENSPPAG00000027946 ##14	UNC93B1 (ENSPPAG00000031688) #16	ALDH3B1 (ENSPPAG00000030155) #17	NDUFS8 (ENSPPAG00000039231) #18	TCIRG1 (ENSPPAG00000030122) #19	CHKA (ENSPPAG00000037771)	ENSPPAG00000036484	KMT5B (ENSPPAG00000038672) #20	C11orf24 (ENSPPAG00000030344) #21	LRP5 (ENSPPAG00000027899) #22	PPP6R3 (ENSPPAG00000040283) #23	GAL (ENSPPAG00000030688) #24	TESMIN (ENSPPAG00000042130) #25	CPT1A (ENSPPAG00000026146) #26	ENSPPAG00000035588	MRPL21 (ENSPPAG00000038393) #27	IGHMBP2 (ENSPPAG00000027355) #28	MRGPRD (ENSPPAG00000018331) #29	MRGPRF (ENSPPAG00000028148) #30	TPCN2 (ENSPPAG00000031099) #31	MYEOV (ENSPPAG00000027386) #33	ENSPPAG00000033657 ##34	ENSPPAG00000014303	ENSPPAG00000036375 #35	ENSPPAG00000035520 #36
Bonobo	MODERN SPECIES	13	ENSPPAG00000030571	ENSPPAG00000033017	CRYBA4 (ENSPPAG00000028348)	CRYBB1 (ENSPPAG00000028143)	ENSPPAG00000021871	TPST2 (ENSPPAG00000041524)	TFIP11 (ENSPPAG00000037529)	SRRD (ENSPPAG00000036964)	HPS4 (ENSPPAG00000011496)	ASPHD2 (ENSPPAG00000043426)	SEZ6L (ENSPPAG00000036759)	MYO18B (ENSPPAG00000030665)	ENSPPAG00000035689	GRK3 (ENSPPAG00000028956)	ENSPPAG00000012446	ENSPPAG00000039812 #22	ENSPPAG00000035108	ENSPPAG00000033834	CRYBB3 (ENSPPAG00000035463)	KIAA1671 (ENSPPAG00000042972)	LHFPL7 (ENSPPAG00000039763)	SGSM1 (ENSPPAG00000025023)	PIWIL3 (ENSPPAG00000031985)	GGT5 (ENSPPAG00000003938)	SUSD2 (ENSPPAG00000033704)	CABIN1 (ENSPPAG00000039279)	ENSPPAG00000020373	ENSPPAG00000015152	ENSPPAG00000011364	ENSPPAG00000010448	ENSPPAG00000035285
Orangutan	MODERN SPECIES	2	PITPNM1 (ENSPPYG00000002988)	CDK2AP2 (ENSPPYG00000002987)	CABP2 (ENSPPYG00000002986)	GSTP1 (ENSPPYG00000002985) #7	NDUFV1 (ENSPPYG00000002983) #8	NUDT8 (ENSPPYG00000029677) #10	TBX10 (ENSPPYG00000002981) #11	ACY3 (ENSPPYG00000002980) #12	ALDH3B2 (ENSPPYG00000038703) #13	UNC93B1 (ENSPPYG00000020003) #16	ALDH3B1 (ENSPPYG00000002977) #17	NDUFS8 (ENSPPYG00000002976) #18	CHKA (ENSPPYG00000002974)	KMT5B (ENSPPYG00000002973) #20	C11orf24 (ENSPPYG00000002972) #21	LRP5 (ENSPPYG00000036218) #22	PPP6R3 (ENSPPYG00000002970) #23	GAL (ENSPPYG00000002969) #24	TESMIN (ENSPPYG00000002968) #25	CPT1A (ENSPPYG00000002967) #26	ENSPPYG00000002966 #27	IGHMBP2 (ENSPPYG00000002965) #28	MRGPRD (ENSPPYG00000002964) #29	MRGPRF (ENSPPYG00000037582) #30	TPCN2 (ENSPPYG00000002962) #31	SMIM38 (ENSPPYG00000032272) #32	MYEOV (ENSPPYG00000033224) #33	ENSPPYG00000018627 ##34	ENSPPYG00000039142	CCND1 (ENSPPYG00000002961) #35	LTO1 (ENSPPYG00000030489) #36
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	19	CDK2AP2 (ENSNLEG00000006438)	ENSNLEG00000006441	ENSNLEG00000006448	NDUFV1 (ENSNLEG00000006458) #8	ENSNLEG00000028816 #9	ENSNLEG00000006493 #11	ACY3 (ENSNLEG00000006494) #12	ALDH3B2 (ENSNLEG00000006499) #13	UNC93B1 (ENSNLEG00000006504) #16	ALDH3B1 (ENSNLEG00000006517) #17	NDUFS8 (ENSNLEG00000006525) #18	TCIRG1 (ENSNLEG00000006527) #19	CHKA (ENSNLEG00000006538)	KMT5B (ENSNLEG00000033680) #20	C11orf24 (ENSNLEG00000006549) #21	LRP5 (ENSNLEG00000006550) #22	PPP6R3 (ENSNLEG00000006556) #23	GAL (ENSNLEG00000006599) #24	TESMIN (ENSNLEG00000006601) #25	CPT1A (ENSNLEG00000026864) #26	MRPL21 (ENSNLEG00000006605) #27	ENSNLEG00000027457	IGHMBP2 (ENSNLEG00000006609) #28	ENSNLEG00000006613 #29	TPCN2 (ENSNLEG00000006614) #31	ENSNLEG00000027800 ##34	CCND1 (ENSNLEG00000029930) #35	ENSNLEG00000010437 #36	FGF19 (ENSNLEG00000010441)	ENSNLEG00000033620	ENSNLEG00000010450
Gibbon	MODERN SPECIES	22	ENSNLEG00000027257	CRYBA4 (ENSNLEG00000007741)	CRYBB1 (ENSNLEG00000034612)	TPST2 (ENSNLEG00000007737)	TFIP11 (ENSNLEG00000007735)	SRRD (ENSNLEG00000007734)	HPS4 (ENSNLEG00000007733)	ENSNLEG00000027675	ASPHD2 (ENSNLEG00000007732)	ENSNLEG00000007728	MYO18B (ENSNLEG00000007723)	GRK3 (ENSNLEG00000007720)	ENSNLEG00000027170	ENSNLEG00000027432	ENSNLEG00000027308	ENSNLEG00000029623 #22	ENSNLEG00000036080	CRYBB2 (ENSNLEG00000007717)	CRYBB3 (ENSNLEG00000007715)	ENSNLEG00000036022	ENSNLEG00000007711	LHFPL7 (ENSNLEG00000007710)	SGSM1 (ENSNLEG00000007700)	PIWIL3 (ENSNLEG00000007677)	ENSNLEG00000034373	IGLV9-49 (ENSNLEG00000034782)	ENSNLEG00000031427	ENSNLEG00000031871	VPREB1 (ENSNLEG00000015413)	ENSNLEG00000031962	ENSNLEG00000031146
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00400000022774 #33	ENSGT00940000157816 #35	ENSGT00910000147590 #37	ENSGT00390000009426 #36
Rhinopithecus	ANCESTRAL SPECIES	1	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00400000022774 #33	ENSGT00940000157816 #35	ENSGT00910000147590 #37	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Golden snub-nosed monkey	MODERN SPECIES	1279	CABP2 (ENSRROG00000037183)	GSTP1 (ENSRROG00000027191) #7	NDUFV1 (ENSRROG00000037664) #8	ENSRROG00000026586 #9	NUDT8 (ENSRROG00000037097) #10	TBX10 (ENSRROG00000039702) #11	ACY3 (ENSRROG00000039646) #12	ALDH3B2 (ENSRROG00000030687) #13	UNC93B1 (ENSRROG00000012536) #16	ALDH3B1 (ENSRROG00000035472) #17	NDUFS8 (ENSRROG00000035645) #18	TCIRG1 (ENSRROG00000035211) #19	CHKA (ENSRROG00000016904)	KMT5B (ENSRROG00000045691) #20	C11orf24 (ENSRROG00000027402) #21	LRP5 (ENSRROG00000036339) #22	ENSRROG00000031480 #23
Black snub-nosed monkey	MODERN SPECIES	100		FGF9 (ENSRBIG00000038855)	MICU2 (ENSRBIG00000024714)	ZDHHC20 (ENSRBIG00000043965)	ENSRBIG00000002487	ENSRBIG00000039121	ENSRBIG00000038327	MPHOSPH8 (ENSRBIG00000020664)	PSPC1 (ENSRBIG00000036057)	ENSRBIG00000029211	ZMYM5 (ENSRBIG00000037855)	ENSRBIG00000034122	ZMYM2 (ENSRBIG00000035593)	GJA3 (ENSRBIG00000044002)	GJB2 (ENSRBIG00000022663)	ENSRBIG00000044426 #22	PPP6R3 (ENSRBIG00000044728) #23	GAL (ENSRBIG00000043331) #24	TESMIN (ENSRBIG00000041391) #25	CPT1A (ENSRBIG00000007771) #26	MRPL21 (ENSRBIG00000044044) #27	IGHMBP2 (ENSRBIG00000044249) #28	MRGPRF (ENSRBIG00000030308) #30	TPCN2 (ENSRBIG00000037035) #31	SMIM38 (ENSRBIG00000027460) #32	ENSRBIG00000029980	MYEOV (ENSRBIG00000038697) #33	CCND1 (ENSRBIG00000036860) #35	LTO1 (ENSRBIG00000042427) #36	ENSRBIG00000036535 #37	FGF19 (ENSRBIG00000032547)
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00400000022774 #33	ENSGT00940000157816 #35	ENSGT01030000240235	ENSGT00910000147590 #37
Vervet Monkey	MODERN SPECIES		CABP2 (ENSCSAG00000008676)	GSTP1 (ENSCSAG00000008684) #7	NDUFV1 (ENSCSAG00000008693) #8	ENSCSAG00000008700 #9	ENSCSAG00000008710	TBX10 (ENSCSAG00000008726) #11	ACY3 (ENSCSAG00000008735) #12	ALDH3B2 (ENSCSAG00000008743) #13	UNC93B1 (ENSCSAG00000008748) #16	ENSCSAG00000008797 ##13	NDUFS8 (ENSCSAG00000008821) #18	TCIRG1 (ENSCSAG00000008911) #19	CHKA (ENSCSAG00000008953)	KMT5B (ENSCSAG00000008964) #20	ENSCSAG00000008972 #21	LRP5 (ENSCSAG00000008983) #22	PPP6R3 (ENSCSAG00000009005) #23	GAL (ENSCSAG00000009024) #24	TESMIN (ENSCSAG00000009039) #25	CPT1A (ENSCSAG00000009054) #26	MRPL21 (ENSCSAG00000009065) #27	IGHMBP2 (ENSCSAG00000009185) #28	MRGPRD (ENSCSAG00000009230) #29	MRGPRF (ENSCSAG00000009245) #30	TPCN2 (ENSCSAG00000009261) #31	CCND1 (ENSCSAG00000009273) #35	LTO1 (ENSCSAG00000009279) #36	ENSCSAG00000018961	FGF19 (ENSCSAG00000009286)	FGF4 (ENSCSAG00000009298)	FGF3 (ENSCSAG00000009310)
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00400000022774 #33	ENSGT00940000157816 #35	ENSGT01030000240235	ENSGT00910000147590 #37
Cercopithecinae_b	ANCESTRAL SPECIES	16	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00400000022774 #33	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00960000186788
Olive baboon	MODERN SPECIES	3	GSTP1 (ENSPANG00000004067) #7	NDUFV1 (ENSPANG00000011236) #8	ENSPANG00000008595 #9	NUDT8 (ENSPANG00000009837) #10	TBX10 (ENSPANG00000006501) #11	ACY3 (ENSPANG00000024740) #12	ENSPANG00000046704 #13	ENSPANG00000049723	UNC93B1 (ENSPANG00000025891) #16	ALDH3B1 (ENSPANG00000010862) #17	TCIRG1 (ENSPANG00000012975) #19	CHKA (ENSPANG00000015385)	ENSPANG00000047861 #20	ENSPANG00000003110 #20	C11orf24 (ENSPANG00000023334) #21	LRP5 (ENSPANG00000023602) #22	PPP6R3 (ENSPANG00000025892) #23	ENSPANG00000043414 #24	TESMIN (ENSPANG00000013061) #25	CPT1A (ENSPANG00000020294) #26	MRPL21 (ENSPANG00000018811) #27	IGHMBP2 (ENSPANG00000023650) #28	MRGPRD (ENSPANG00000039940) #29	MRGPRF (ENSPANG00000025893) #30	TPCN2 (ENSPANG00000007008) #31	SMIM38 (ENSPANG00000032349) #32	CCND1 (ENSPANG00000043007) #35	ENSPANG00000008596 #36	FGF19 (ENSPANG00000042087)	FGF4 (ENSPANG00000019451)	FGF3 (ENSPANG00000023335)
Cercopithecinae_d	ANCESTRAL SPECIES	6	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00400000022774 #33	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00960000186788	ENSGT00940000158825
Sooty mangabey	MODERN SPECIES	518	CABP2 (ENSCATG00000029380)	GSTP1 (ENSCATG00000032849) #7	NDUFV1 (ENSCATG00000028405) #8	ENSCATG00000030569 #9	NUDT8 (ENSCATG00000029910) #10	TBX10 (ENSCATG00000029511) #11	ACY3 (ENSCATG00000030863) #12	ALDH3B2 (ENSCATG00000015105) #13	UNC93B1 (ENSCATG00000037367) #16	ALDH3B1 (ENSCATG00000030949) #17	NDUFS8 (ENSCATG00000042587) #18	TCIRG1 (ENSCATG00000031312) #19	CHKA (ENSCATG00000041180)	KMT5B (ENSCATG00000042964) #20	ENSCATG00000042618 #21	LRP5 (ENSCATG00000039241) #22	PPP6R3 (ENSCATG00000036683) #23	GAL (ENSCATG00000042505) #24	TESMIN (ENSCATG00000042664) #25	CPT1A (ENSCATG00000015860) #26	MRPL21 (ENSCATG00000041171) #27	IGHMBP2 (ENSCATG00000031229) #28	MRGPRD (ENSCATG00000022559) #29	MRGPRF (ENSCATG00000033118) #30	TPCN2 (ENSCATG00000041149) #31	MYEOV (ENSCATG00000034953) #33	CCND1 (ENSCATG00000040258) #35	LTO1 (ENSCATG00000039172) #36	FGF19 (ENSCATG00000038630)	ENSCATG00000032815	FGF4 (ENSCATG00000034644)
Drill	MODERN SPECIES	942	CDK2AP2 (ENSMLEG00000040207)	CABP2 (ENSMLEG00000010923)	GSTP1 (ENSMLEG00000007972) #7	NDUFV1 (ENSMLEG00000041364) #8	NUDT8 (ENSMLEG00000008171) #10	ENSMLEG00000030742	ACY3 (ENSMLEG00000031989) #12	ALDH3B2 (ENSMLEG00000028402) #13	UNC93B1 (ENSMLEG00000037140) #16	ALDH3B1 (ENSMLEG00000025945) #17	NDUFS8 (ENSMLEG00000031739) #18	TCIRG1 (ENSMLEG00000010508) #19	CHKA (ENSMLEG00000043175)	KMT5B (ENSMLEG00000035508) #20	ENSMLEG00000038166 #21	LRP5 (ENSMLEG00000011072) #22	PPP6R3 (ENSMLEG00000039058) #23	GAL (ENSMLEG00000028956) #24	TESMIN (ENSMLEG00000036701) #25	CPT1A (ENSMLEG00000035301) #26	MRPL21 (ENSMLEG00000044097) #27	IGHMBP2 (ENSMLEG00000043529) #28	MRGPRF (ENSMLEG00000029222) #30	TPCN2 (ENSMLEG00000042447) #31	MYEOV (ENSMLEG00000043368) #33	ENSMLEG00000040718 #35	LTO1 (ENSMLEG00000035959) #36	ENSMLEG00000042285	ENSMLEG00000023931	FGF3 (ENSMLEG00000035348)	ANO1 (ENSMLEG00000028568)
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00910000147792	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00400000022774 #33	ENSGT00940000157816 #35	ENSGT01030000240235	ENSGT00910000147590 #37	ENSGT00390000009426 #36
Pig-tailed macaque	MODERN SPECIES	433	GSTP1 (ENSMNEG00000044300) #7	NDUFV1 (ENSMNEG00000041086) #8	ENSMNEG00000033340 #9	NUDT8 (ENSMNEG00000041484) #10	TBX10 (ENSMNEG00000032749) #11	ACY3 (ENSMNEG00000041493) #12	ALDH3B2 (ENSMNEG00000042334) #13	UNC93B1 (ENSMNEG00000042693) #16	ENSMNEG00000044884 ##13	NDUFS8 (ENSMNEG00000029160) #18	TCIRG1 (ENSMNEG00000044486) #19	CHKA (ENSMNEG00000041615)	KMT5B (ENSMNEG00000028922) #20	ENSMNEG00000035330	ENSMNEG00000035688 #21	LRP5 (ENSMNEG00000044124) #22	PPP6R3 (ENSMNEG00000045264) #23	GAL (ENSMNEG00000041422) #24	TESMIN (ENSMNEG00000045298) #25	CPT1A (ENSMNEG00000037562) #26	MRPL21 (ENSMNEG00000036906) #27	ENSMNEG00000040189	IGHMBP2 (ENSMNEG00000043511) #28	MRGPRF (ENSMNEG00000028189) #30	TPCN2 (ENSMNEG00000043437) #31	MYEOV (ENSMNEG00000040855) #33	CCND1 (ENSMNEG00000040753) #35	LTO1 (ENSMNEG00000042591) #36	FGF19 (ENSMNEG00000035985)	ENSMNEG00000044891	FGF4 (ENSMNEG00000042206)
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e #21	ENSGT01100000263493.a.b.a.b.a.b.a.b.a.a.a	ENSGT00940000163244.d.b.a.b.b.b.a.a	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00910000147792	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT00940000164709.a.b.b.a.b.a.a.a.a.a.a.a.a	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT01030000240235	ENSGT00910000147590 #37	ENSGT00390000009426 #36
Rhesus	MODERN SPECIES	5	ENSMMUG00000062171	NUDT8 (ENSMMUG00000042611) #10	TBX10 (ENSMMUG00000056105) #11	ACY3 (ENSMMUG00000039824) #12	ALDH3B2 (ENSMMUG00000018533) #13	UNC93B1 (ENSMMUG00000023184) #16	ALDH3B1 (ENSMMUG00000023188) ##13	NDUFS8 (ENSMMUG00000023189) #18	TCIRG1 (ENSMMUG00000023190) #19	CHKA (ENSMMUG00000023192)	KMT5B (ENSMMUG00000014237) #20	ENSMMUG00000042838	C14H11orf24 (ENSMMUG00000019253) #21	ENSMMUG00000049489	ENSMMUG00000058610	LRP5 (ENSMMUG00000031237) #22	PPP6R3 (ENSMMUG00000016213) #23	GAL (ENSMMUG00000064140) #24	TESMIN (ENSMMUG00000001777) #25	CPT1A (ENSMMUG00000001780) #26	ENSMMUG00000062742	MRPL21 (ENSMMUG00000010124) #27	IGHMBP2 (ENSMMUG00000010128) #28	ENSMMUG00000051144	MRGPRD (ENSMMUG00000010129) #29	MRGPRF (ENSMMUG00000047446) #30	TPCN2 (ENSMMUG00000010784) #31	CCND1 (ENSMMUG00000002368) #35	ENSMMUG00000057523	ENSMMUG00000049990 #37	LTO1 (ENSMMUG00000002369) #36
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000061940	NDUFV1 (ENSMFAG00000038730) #8	TBX10 (ENSMFAG00000007056) #11	ACY3 (ENSMFAG00000046339) #12	ALDH3B2 (ENSMFAG00000044295) #13	UNC93B1 (ENSMFAG00000043671) #16	ENSMFAG00000001507 ##13	NDUFS8 (ENSMFAG00000035405) #18	TCIRG1 (ENSMFAG00000030577) #19	CHKA (ENSMFAG00000032927)	KMT5B (ENSMFAG00000030851) #20	ENSMFAG00000008768	C11orf24 (ENSMFAG00000036404) #21	ENSMFAG00000059616	ENSMFAG00000064267	ENSMFAG00000036113 #22	PPP6R3 (ENSMFAG00000036974) #23	ENSMFAG00000001933 #24	TESMIN (ENSMFAG00000032724) #25	ENSMFAG00000054259	CPT1A (ENSMFAG00000031988) #26	ENSMFAG00000050046	ENSMFAG00000065150	MRPL21 (ENSMFAG00000043823) #27	IGHMBP2 (ENSMFAG00000043909) #28	ENSMFAG00000062875	ENSMFAG00000052017	MRGPRD (ENSMFAG00000065051) #29	MRGPRF (ENSMFAG00000031267) #30	TPCN2 (ENSMFAG00000045821) #31	ENSMFAG00000056625
Platyrrhini	ANCESTRAL SPECIES	15	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT01030000240235	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Cebidae	ANCESTRAL SPECIES		ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT01030000240235	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Cebidae_a	ANCESTRAL SPECIES	18	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182	ENSGT00390000002105
Bolivian squirrel monkey	MODERN SPECIES	184	ENSSBOG00000030579 #8	ENSSBOG00000028474	TBX10 (ENSSBOG00000027660) #11	ACY3 (ENSSBOG00000026048) #12	ALDH3B2 (ENSSBOG00000022925) #13	ENSSBOG00000019661	UNC93B1 (ENSSBOG00000027617) #16	ALDH3B1 (ENSSBOG00000021610) #17	NDUFS8 (ENSSBOG00000020737) #18	TCIRG1 (ENSSBOG00000029778) #19	CHKA (ENSSBOG00000029779)	ENSSBOG00000014251	KMT5B (ENSSBOG00000018620) #20	ENSSBOG00000017297	C11orf24 (ENSSBOG00000021901) #21	LRP5 (ENSSBOG00000011522) #22	PPP6R3 (ENSSBOG00000024673) #23	GAL (ENSSBOG00000018976) #24	ENSSBOG00000033953 #25	CPT1A (ENSSBOG00000027234) #26	MRPL21 (ENSSBOG00000021429) #27	IGHMBP2 (ENSSBOG00000021342) #28	MRGPRF (ENSSBOG00000022916) #30	TPCN2 (ENSSBOG00000036110) #31	ENSSBOG00000023740	CCND1 (ENSSBOG00000031704) #35	LTO1 (ENSSBOG00000030139) #36	FGF19 (ENSSBOG00000032296)	FGF4 (ENSSBOG00000020328)	FGF3 (ENSSBOG00000028072)	ANO1 (ENSSBOG00000025783)
Capuchin	MODERN SPECIES	102	CABP2 (ENSCCAG00000018244)	ENSCCAG00000037776	NDUFV1 (ENSCCAG00000027983) #8	ENSCCAG00000024841	ENSCCAG00000034598 #9	TBX10 (ENSCCAG00000035836) #11	ACY3 (ENSCCAG00000030848) #12	ALDH3B2 (ENSCCAG00000025402) #13	UNC93B1 (ENSCCAG00000034142) #16	ALDH3B1 (ENSCCAG00000020585) #17	ENSCCAG00000036231 #18	ENSCCAG00000030447 #19	CHKA (ENSCCAG00000036109)	KMT5B (ENSCCAG00000022496) #20	C11orf24 (ENSCCAG00000029246) #21	LRP5 (ENSCCAG00000035778) #22	PPP6R3 (ENSCCAG00000026978) #23	GAL (ENSCCAG00000028808) #24	TESMIN (ENSCCAG00000028427) #25
Marmoset	MODERN SPECIES	2	ENSCJAG00000000879	ENSCJAG00000031574	NDUFV1 (ENSCJAG00000000839) #8	ENSCJAG00000041608	TBX10 (ENSCJAG00000071274) #11	ACY3 (ENSCJAG00000070289) #12	ALDH3B2 (ENSCJAG00000077097) #13	UNC93B1 (ENSCJAG00000045026) #16	ALDH3B1 (ENSCJAG00000015676) #17	ENSCJAG00000015686 #18	TCIRG1 (ENSCJAG00000015705) #19	CHKA (ENSCJAG00000015722)	ENSCJAG00000022979	KMT5B (ENSCJAG00000015727) #20	C11orf24 (ENSCJAG00000043469) #21	LRP5 (ENSCJAG00000015736) #22	PPP6R3 (ENSCJAG00000015752) #23	ENSCJAG00000079396	GAL (ENSCJAG00000015858) #24	TESMIN (ENSCJAG00000015860) #25	CPT1A (ENSCJAG00000015871) #26	MRPL21 (ENSCJAG00000015881) #27	IGHMBP2 (ENSCJAG00000015887) #28	ENSCJAG00000076956	MRGPRF (ENSCJAG00000079141) #30	TPCN2 (ENSCJAG00000015902) #31	ENSCJAG00000080728	ENSCJAG00000087214	ENSCJAG00000056159	ENSCJAG00000079289	ENSCJAG00000079611
Mas night monkey	MODERN SPECIES	411	NDUFV1 (ENSANAG00000029177) #8	ENSANAG00000026619 #9	ENSANAG00000026791	TBX10 (ENSANAG00000029548) #11	ACY3 (ENSANAG00000024838) #12	ALDH3B2 (ENSANAG00000022991) #13	UNC93B1 (ENSANAG00000026380) #16	ALDH3B1 (ENSANAG00000022742) #17	NDUFS8 (ENSANAG00000033484) #18	TCIRG1 (ENSANAG00000032110) #19	CHKA (ENSANAG00000025868)	KMT5B (ENSANAG00000029415) #20	ENSANAG00000017977	C11orf24 (ENSANAG00000035026) #21	ENSANAG00000021978	LRP5 (ENSANAG00000027436) #22	PPP6R3 (ENSANAG00000020950) #23	GAL (ENSANAG00000038246) #24	TESMIN (ENSANAG00000011110) #25	CPT1A (ENSANAG00000017356) #26	MRPL21 (ENSANAG00000020754) #27	IGHMBP2 (ENSANAG00000027309) #28	MRGPRF (ENSANAG00000026421) #30	TPCN2 (ENSANAG00000022288) #31	ENSANAG00000022087	CCND1 (ENSANAG00000027376) #35	LTO1 (ENSANAG00000020841) #36	FGF19 (ENSANAG00000028313)	FGF4 (ENSANAG00000028917)	FGF3 (ENSANAG00000033426)	ANO1 (ENSANAG00000037157)
Tarsier	MODERN SPECIES	5023															CUNH11orf24 (ENSTSYG00000032039) #21	LRP5 (ENSTSYG00000031238) #22	ENSTSYG00000037486	PPP6R3 (ENSTSYG00000004234) #23
Strepsirrhini	ANCESTRAL SPECIES	35	ENSGT00940000164125	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182	ENSGT00390000002105
Lemuriformes	ANCESTRAL SPECIES	14	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182	ENSGT00390000002105
Lemuriformes_a	ANCESTRAL SPECIES	3	ENSGT00940000164125	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182	ENSGT00390000002105
Greater bamboo lemur	MODERN SPECIES	496															ENSPSMG00000002727	LRP5 (ENSPSMG00000002716) #22	PPP6R3 (ENSPSMG00000001136) #23	GAL (ENSPSMG00000000240) #24	TESMIN (ENSPSMG00000000229) #25	CPT1A (ENSPSMG00000000163) #26	MRPL21 (ENSPSMG00000000024) #27	ENSPSMG00000025141
Coquerels sifaka	MODERN SPECIES	124	ENSPCOG00000013544	GSTP1 (ENSPCOG00000025031) #7	NDUFV1 (ENSPCOG00000016494) #8	ENSPCOG00000025071 #9	ENSPCOG00000017507	ENSPCOG00000026012	ACY3 (ENSPCOG00000016521) #12	ALDH3B2 (ENSPCOG00000020768) #13	UNC93B1 (ENSPCOG00000023404) #16	ALDH3B1 (ENSPCOG00000028800) #17	NDUFS8 (ENSPCOG00000000121) #18	TCIRG1 (ENSPCOG00000027699) #19	CHKA (ENSPCOG00000027662)	KMT5B (ENSPCOG00000028166) #20	C11orf24 (ENSPCOG00000018326) #21	LRP5 (ENSPCOG00000026929) #22	PPP6R3 (ENSPCOG00000028586) #23	GAL (ENSPCOG00000019500) #24	TESMIN (ENSPCOG00000022912) #25	CPT1A (ENSPCOG00000000084) #26	MRPL21 (ENSPCOG00000015404) #27	IGHMBP2 (ENSPCOG00000018759) #28	MRGPRF (ENSPCOG00000010107) #30	TPCN2 (ENSPCOG00000017980) #31	CCND1 (ENSPCOG00000027474) #35	LTO1 (ENSPCOG00000027650) #36	FGF19 (ENSPCOG00000020362)	FGF4 (ENSPCOG00000028304)	FGF3 (ENSPCOG00000025992)	ANO1 (ENSPCOG00000026720)	FADD (ENSPCOG00000022951)
Mouse lemur	MODERN SPECIES	27	CABP2 (ENSMICG00000006052)	GSTP1 (ENSMICG00000035404) #7	NDUFV1 (ENSMICG00000038015) #8	ENSMICG00000034887 #9	ENSMICG00000031375	ENSMICG00000038049	ACY3 (ENSMICG00000010175) #12	ALDH3B2 (ENSMICG00000002573) #13	UNC93B1 (ENSMICG00000009511) #16	ALDH3B1 (ENSMICG00000009516) #17	ENSMICG00000009523 #18	TCIRG1 (ENSMICG00000009530) #19	CHKA (ENSMICG00000009554)	KMT5B (ENSMICG00000028472) #20	C11orf24 (ENSMICG00000035582) #21	LRP5 (ENSMICG00000014388) #22	PPP6R3 (ENSMICG00000003096) #23	GAL (ENSMICG00000046807) #24	TESMIN (ENSMICG00000001063) #25	CPT1A (ENSMICG00000001068) #26	MRPL21 (ENSMICG00000046580) #27	IGHMBP2 (ENSMICG00000043944) #28	MRGPRF (ENSMICG00000017866) #30	TPCN2 (ENSMICG00000017867) #31	CCND1 (ENSMICG00000033113) #35	LTO1 (ENSMICG00000003061) #36	FGF19 (ENSMICG00000047906)	FGF4 (ENSMICG00000046252)	FGF3 (ENSMICG00000045024)	ANO1 (ENSMICG00000017568)	FADD (ENSMICG00000047386)
Bushbaby	MODERN SPECIES	249	CABP2 (ENSOGAG00000032757)	ENSOGAG00000001869	NDUFV1 (ENSOGAG00000000781) #8	ENSOGAG00000025265 #9	ENSOGAG00000000783	ENSOGAG00000000784	ACY3 (ENSOGAG00000000785) #12	ALDH3B2 (ENSOGAG00000000786) #13	UNC93B1 (ENSOGAG00000000787) #16	ALDH3B1 (ENSOGAG00000000789) #17	NDUFS8 (ENSOGAG00000013220) #18	TCIRG1 (ENSOGAG00000028104) #19	CHKA (ENSOGAG00000000790)	KMT5B (ENSOGAG00000025516) #20	C11orf24 (ENSOGAG00000032648) #21	LRP5 (ENSOGAG00000007721) #22	PPP6R3 (ENSOGAG00000007734) #23	GAL (ENSOGAG00000007742) #24	TESMIN (ENSOGAG00000007743) #25	CPT1A (ENSOGAG00000007747) #26	IGHMBP2 (ENSOGAG00000011671) #28	MRGPRF (ENSOGAG00000011677) #30	TPCN2 (ENSOGAG00000014554) #31	ENSOGAG00000024468	CCND1 (ENSOGAG00000011495) #35	LTO1 (ENSOGAG00000011848) #36	FGF19 (ENSOGAG00000028091)	FGF4 (ENSOGAG00000011500)	FGF3 (ENSOGAG00000029967)	ANO1 (ENSOGAG00000016331)	FADD (ENSOGAG00000016337)
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000163889 #10	ENSGT00940000163374	ENSGT01100000264273	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Tree shrew	MODERN SPECIES	3770															ENSTBEG00000006799 #21	LRP5 (ENSTBEG00000007403) #22
Glires	ANCESTRAL SPECIES	1	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT01100000264273	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT01100000264273	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT01100000264273	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT01100000264273	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Long-tailed chinchilla	MODERN SPECIES	129	CABP2 (ENSCLAG00000015734)	GSTP1 (ENSCLAG00000015548) #7	NDUFV1 (ENSCLAG00000016746) #8	ENSCLAG00000016785 #9	ENSCLAG00000016240	TBX10 (ENSCLAG00000015667) #11	ACY3 (ENSCLAG00000016314) #12	ALDH3B2 (ENSCLAG00000017296) #13	UNC93B1 (ENSCLAG00000016729) #16	ALDH3B1 (ENSCLAG00000016029) #17	NDUFS8 (ENSCLAG00000017156) #18	TCIRG1 (ENSCLAG00000014792) #19	CHKA (ENSCLAG00000014223)	KMT5B (ENSCLAG00000016628) #20	ENSCLAG00000017122 #21	LRP5 (ENSCLAG00000016254) #22	PPP6R3 (ENSCLAG00000015508) #23	GAL (ENSCLAG00000016374) #24	TESMIN (ENSCLAG00000015628) #25	CPT1A (ENSCLAG00000016594) #26	MRPL21 (ENSCLAG00000016038) #27	IGHMBP2 (ENSCLAG00000015500) #28	MRGPRD (ENSCLAG00000016417) #29	MRGPRF (ENSCLAG00000016323) #30	TPCN2 (ENSCLAG00000016178) #31	CCND1 (ENSCLAG00000014981) #35	LTO1 (ENSCLAG00000014111) #36	FGF19 (ENSCLAG00000015041)	ENSCLAG00000014848	FGF3 (ENSCLAG00000015995)	ANO1 (ENSCLAG00000015936)
Degu	MODERN SPECIES	59	ENSODEG00000017726 #7	NDUFV1 (ENSODEG00000017535) #8	ENSODEG00000017660 #9	ENSODEG00000017697	TBX10 (ENSODEG00000017601) #11	ACY3 (ENSODEG00000017439) #12	ALDH3B2 (ENSODEG00000017453) #13	ENSODEG00000017464	UNC93B1 (ENSODEG00000017652) #16	ALDH3B1 (ENSODEG00000017474) #17	ENSODEG00000017577 #18	TCIRG1 (ENSODEG00000017607) #19	CHKA (ENSODEG00000017808)	ENSODEG00000017460 #20	C11orf24 (ENSODEG00000017396) #21	LRP5 (ENSODEG00000017493) #22	ENSODEG00000020451 ##14	PPP6R3 (ENSODEG00000017311) #23	GAL (ENSODEG00000017519) #24	TESMIN (ENSODEG00000017728) #25	CPT1A (ENSODEG00000017481) #26	MRPL21 (ENSODEG00000017369) #27	IGHMBP2 (ENSODEG00000017354) #28	MRGPRD (ENSODEG00000017313) #29	MRGPRF (ENSODEG00000017539) #30	ENSODEG00000017628	ENSODEG00000017365	TPCN2 (ENSODEG00000017370) #31	CCND1 (ENSODEG00000017314) #35	LTO1 (ENSODEG00000017276) #36	FGF19 (ENSODEG00000017850)
Guinea pig	MODERN SPECIES	42	CABP2 (ENSCPOG00000023151)	GSTP1 (ENSCPOG00000020253) #7	NDUFV1 (ENSCPOG00000006645) #8	ENSCPOG00000022649 #9	ENSCPOG00000002514	TBX10 (ENSCPOG00000032079) #11	ACY3 (ENSCPOG00000002519) #12	ALDH3B2 (ENSCPOG00000002523) #13	UNC93B1 (ENSCPOG00000026431) #16	ALDH3B1 (ENSCPOG00000021502) #17	NDUFS8 (ENSCPOG00000001416) #18	TCIRG1 (ENSCPOG00000001417) #19	CHKA (ENSCPOG00000022236)	KMT5B (ENSCPOG00000002147) #20	ENSCPOG00000000621 #21	LRP5 (ENSCPOG00000008119) #22	PPP6R3 (ENSCPOG00000007353) #23	GAL (ENSCPOG00000004337) #24	TESMIN (ENSCPOG00000032989) #25	CPT1A (ENSCPOG00000004344) #26	MRPL21 (ENSCPOG00000038509) #27	IGHMBP2 (ENSCPOG00000007063) #28	MRGPRD (ENSCPOG00000025266) #29	MRGPRF (ENSCPOG00000033803) #30	TPCN2 (ENSCPOG00000002580) #31	CCND1 (ENSCPOG00000032886) #35	LTO1 (ENSCPOG00000031028) #36	FGF19 (ENSCPOG00000008147)	FGF4 (ENSCPOG00000013920)	FGF3 (ENSCPOG00000007355)	ANO1 (ENSCPOG00000011005)
Naked mole-rat female	MODERN SPECIES	14	GSTP1 (ENSHGLG00000018697) #7	NDUFV1 (ENSHGLG00000042428) #8	ENSHGLG00000048694	ENSHGLG00000018636 #9	NUDT8 (ENSHGLG00000047808) #10	TBX10 (ENSHGLG00000015945) #11	ACY3 (ENSHGLG00000015831) #12	ALDH3B2 (ENSHGLG00000010052) #13	UNC93B1 (ENSHGLG00000011769) #16	ALDH3B1 (ENSHGLG00000015602) #17	NDUFS8 (ENSHGLG00000009570) #18	TCIRG1 (ENSHGLG00000018395) #19	CHKA (ENSHGLG00000014648)	KMT5B (ENSHGLG00000014467) #20	C11orf24 (ENSHGLG00000018642) #21	LRP5 (ENSHGLG00000012372) #22	ENSHGLG00000010435 #23	GAL (ENSHGLG00000013095) #24	TESMIN (ENSHGLG00000006844) #25	CPT1A (ENSHGLG00000009799) #26	ENSHGLG00000041256	MRPL21 (ENSHGLG00000007657) #27	IGHMBP2 (ENSHGLG00000006468) #28	MRGPRD (ENSHGLG00000033970) #29	MRGPRF (ENSHGLG00000042564) #30	TPCN2 (ENSHGLG00000009786) #31	SMIM38 (ENSHGLG00000042963) #32	CCND1 (ENSHGLG00000039478) #35	ORAOV1 (ENSHGLG00000041285) #36	FGF19 (ENSHGLG00000049791)	FGF4 (ENSHGLG00000008219)
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Marmotini	ANCESTRAL SPECIES	6	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00940000160334	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Arctic ground squirrel	MODERN SPECIES	172	CDK2AP2 (ENSUPAG00010007891)	CABP2 (ENSUPAG00010007845)	GSTP1 (ENSUPAG00010007817) #7	NDUFV1 (ENSUPAG00010007803) #8	ENSUPAG00010007785 #9	ENSUPAG00010007775	ENSUPAG00010007771	ACY3 (ENSUPAG00010007756) #12	UNC93B1 (ENSUPAG00010007746) #16	ALDH3B1 (ENSUPAG00010007728) #17	NDUFS8 (ENSUPAG00010007713) #18	TCIRG1 (ENSUPAG00010007691) #19	CHKA (ENSUPAG00010007654)	KMT5B (ENSUPAG00010007478) #20	ENSUPAG00010007475 #21	LRP5 (ENSUPAG00010007453) #22	PPP6R3 (ENSUPAG00010007337) #23	ENSUPAG00010007325 #24	CPT1A (ENSUPAG00010007209) #26	MRPL21 (ENSUPAG00010007189) #27	IGHMBP2 (ENSUPAG00010007174) #28	MRGPRD (ENSUPAG00010007168) #29	MRGPRF (ENSUPAG00010007158) #30	TPCN2 (ENSUPAG00010007118) #31	SMIM38 (ENSUPAG00010007115) #32	CCND1 (ENSUPAG00010007111) #35	LTO1 (ENSUPAG00010007106) #36
Squirrel	MODERN SPECIES	199	CABP2 (ENSSTOG00000014876)	GSTP1 (ENSSTOG00000025905) #7	NDUFV1 (ENSSTOG00000005850) #8	ENSSTOG00000021128 #9	ENSSTOG00000024208	TBX10 (ENSSTOG00000011629) #11	ACY3 (ENSSTOG00000015148) #12	UNC93B1 (ENSSTOG00000011497) #16	ALDH3B1 (ENSSTOG00000015155) #17	NDUFS8 (ENSSTOG00000011500) #18	TCIRG1 (ENSSTOG00000024529) #19	CHKA (ENSSTOG00000011503)	ENSSTOG00000019647	KMT5B (ENSSTOG00000024331) #20	ENSSTOG00000012277 #21	LRP5 (ENSSTOG00000012285) #22	PPP6R3 (ENSSTOG00000005109) #23	GAL (ENSSTOG00000019759) #24	TESMIN (ENSSTOG00000012841) #25	CPT1A (ENSSTOG00000012856) #26	MRPL21 (ENSSTOG00000032759) #27	IGHMBP2 (ENSSTOG00000003792) #28	MRGPRF (ENSSTOG00000010947) #30	TPCN2 (ENSSTOG00000012097) #31	CCND1 (ENSSTOG00000000408) #35	LTO1 (ENSSTOG00000028728) #36	FGF19 (ENSSTOG00000021758)	ENSSTOG00000019792	FGF3 (ENSSTOG00000023034)	ANO1 (ENSSTOG00000026271)	FADD (ENSSTOG00000033252)
Alpin marmot	MODERN SPECIES	86	PITPNM1 (ENSMMMG00000000005)	CABP2 (ENSMMMG00000000025)	GSTP1 (ENSMMMG00000000041) #7	NDUFV1 (ENSMMMG00000000065) #8	ENSMMMG00000000088 #9	NUDT8 (ENSMMMG00000000113) #10	ENSMMMG00000000133	ACY3 (ENSMMMG00000000156) #12	ALDH3B2 (ENSMMMG00000000185) #13	UNC93B1 (ENSMMMG00000000216) #16	ALDH3B1 (ENSMMMG00000000301) #17	NDUFS8 (ENSMMMG00000000351) #18	ENSMMMG00000000378 #19	CHKA (ENSMMMG00000000678)	KMT5B (ENSMMMG00000000789) #20	LRP5 (ENSMMMG00000001048) #22	PPP6R3 (ENSMMMG00000001095) #23	GAL (ENSMMMG00000001246) #24	TESMIN (ENSMMMG00000001259) #25	CPT1A (ENSMMMG00000001336) #26	MRPL21 (ENSMMMG00000001368) #27	IGHMBP2 (ENSMMMG00000001381) #28	MRGPRD (ENSMMMG00000001512) #29	MRGPRF (ENSMMMG00000001519) #30	TPCN2 (ENSMMMG00000001627) #31	ENSMMMG00000003260 #35	ENSMMMG00000003262 #35	LTO1 (ENSMMMG00000003272) #36	FGF19 (ENSMMMG00000003282)	FGF4 (ENSMMMG00000003298)	FGF3 (ENSMMMG00000003325)
Eurasian red squirrel	MODERN SPECIES	2	NDUFV1 (ENSSVLG00005025325) #8	ENSSVLG00005025305 #9	ENSSVLG00005025291	TBX10 (ENSSVLG00005025280) #11	ACY3 (ENSSVLG00005025257) #12	ALDH3B2 (ENSSVLG00005025242) #13	UNC93B1 (ENSSVLG00005025215) #16	ALDH3B1 (ENSSVLG00005025147) #17	NDUFS8 (ENSSVLG00005025114) #18	ENSSVLG00005025100 #19	ENSSVLG00005025068 #19	CHKA (ENSSVLG00005025020)	ENSSVLG00005024959	ENSSVLG00005024928 #20	ENSSVLG00005024875 #21	LRP5 (ENSSVLG00005024864) #22	ENSSVLG00005024045 #23	GAL (ENSSVLG00005023853) #24	TESMIN (ENSSVLG00005023772) #25	CPT1A (ENSSVLG00005023707) #26	MRPL21 (ENSSVLG00005023646) #27	ENSSVLG00005023637	ENSSVLG00005023620 #28	MRGPRD (ENSSVLG00005023594) #29	MRGPRF (ENSSVLG00005023569) #30	TPCN2 (ENSSVLG00005023184) #31	ENSSVLG00005023121	CCND1 (ENSSVLG00005023090) #35	LTO1 (ENSSVLG00005023000) #36	FGF19 (ENSSVLG00005022961)	FGF4 (ENSSVLG00005022938)
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163889 #10	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000164125	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000164125	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b.e #13	ENSGT00940000155904.e.b.f #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000162460 #7	ENSGT00390000010641.b #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b.e #13	ENSGT00940000155904.e.b.f #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00390000010641.a #8	ENSGT00390000010641.b #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b.e #13	ENSGT00940000155904.e.b.f #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Chinese hamster chok1gshd	MODERN SPECIES	401	Gstp1 (ENSCGRG00001020577) #7	Ndufv1 (ENSCGRG00001015739) #8	Doc2g (ENSCGRG00001018346) #9	Nudt8 (ENSCGRG00001011961)	Tbx10 (ENSCGRG00001004850)	Acy3 (ENSCGRG00001022288) #12	Aldh3b2 (ENSCGRG00001013897) #13	Aldh3b3 (ENSCGRG00001006169) #13	Unc93b1 (ENSCGRG00001017240) #16	Aldh3b1 (ENSCGRG00001001915) #17	Ndufs8 (ENSCGRG00001023988) #18	Tcirg1 (ENSCGRG00001015923) #19	Chka (ENSCGRG00001013471)	Kmt5b (ENSCGRG00001019834) #20	1810055G02Rik (ENSCGRG00001015629) #21	Lrp5 (ENSCGRG00001011999) #22	Ppp6r3 (ENSCGRG00001009544) #23	Gal (ENSCGRG00001007993) #24	Tesmin (ENSCGRG00001021557) #25	Cpt1a (ENSCGRG00001018477) #26	Mrpl21 (ENSCGRG00001024565) #27	Ighmbp2 (ENSCGRG00001019126) #28	Mrgprd (ENSCGRG00001015216) #29	Mrgprf (ENSCGRG00001021238) #30	Tpcn2 (ENSCGRG00001010845) #31	ENSCGRG00001001688	Ccnd1 (ENSCGRG00001022268) #35	LTO1 (ENSCGRG00001016809) #36	Fgf15 (ENSCGRG00001006635)	Fgf4 (ENSCGRG00001018014)	Fgf3 (ENSCGRG00001022007)
Golden Hamster	MODERN SPECIES	617	Gstp3 (ENSMAUG00000016934)	Gstp1 (ENSMAUG00000017855) #7	ENSMAUG00000017366 #8	Doc2g (ENSMAUG00000017758) #9	Nudt8 (ENSMAUG00000017149)	Tbx10 (ENSMAUG00000019219)	Acy3 (ENSMAUG00000017411) #12	Aldh3b2 (ENSMAUG00000017545) #13	Unc93b1 (ENSMAUG00000018290) #16	Aldh3b1 (ENSMAUG00000017809) #17	Ndufs8 (ENSMAUG00000017880) #18	Chka (ENSMAUG00000017295)	Kmt5b (ENSMAUG00000018918) #20	ENSMAUG00000018025	1810055G02Rik (ENSMAUG00000017064) #21	Lrp5 (ENSMAUG00000018003) #22	Ppp6r3 (ENSMAUG00000019291) #23	Gal (ENSMAUG00000017428) #24	Tesmin (ENSMAUG00000017925) #25	Cpt1a (ENSMAUG00000018165) #26	Mrpl21 (ENSMAUG00000018243) #27	Ighmbp2 (ENSMAUG00000019893) #28	Mrgprf (ENSMAUG00000017389) #30	Tpcn2 (ENSMAUG00000018105) #31	ENSMAUG00000020083 #32	ENSMAUG00000001942	Ccnd1 (ENSMAUG00000017636) #35	LTO1 (ENSMAUG00000018685) #36	Fgf15 (ENSMAUG00000018536)	ENSMAUG00000018543	Fgf3 (ENSMAUG00000017622)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000162460 #7	ENSGT00390000010641.b #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b.e #13	ENSGT00940000155904.e.b.f #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Prairie vole	MODERN SPECIES	16	ENSMOCG00000020246 #7	Ndufv1 (ENSMOCG00000018645) #8	Doc2g (ENSMOCG00000007770) #9	Nudt8 (ENSMOCG00000002104)	Tbx10 (ENSMOCG00000018876)	Acy3 (ENSMOCG00000016646) #12	Aldh3b2 (ENSMOCG00000022624) #13	Aldh3b3 (ENSMOCG00000021302) #13	Unc93b1 (ENSMOCG00000008961) #16	Aldh3b1 (ENSMOCG00000020373) #17	ENSMOCG00000019842	Tcirg1 (ENSMOCG00000005946) #19	Chka (ENSMOCG00000007076)	Kmt5b (ENSMOCG00000015596) #20	1810055G02Rik (ENSMOCG00000021230) #21	Lrp5 (ENSMOCG00000011074) #22	Ppp6r3 (ENSMOCG00000020408) #23	Gal (ENSMOCG00000005202) #24	Tesmin (ENSMOCG00000003633) #25	Cpt1a (ENSMOCG00000014661) #26	Mrpl21 (ENSMOCG00000002555) #27	Ighmbp2 (ENSMOCG00000018939) #28	Mrgprf (ENSMOCG00000005355) #30	Tpcn2 (ENSMOCG00000013268) #31	ENSMOCG00000021239 #32	Ccnd1 (ENSMOCG00000013593) #35	LTO1 (ENSMOCG00000011612) #36	Fgf15 (ENSMOCG00000020351)	ENSMOCG00000003096	Fgf3 (ENSMOCG00000022933)	Ano1 (ENSMOCG00000014655)
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000005365	Ndufv1 (ENSPEMG00000011587) #8	Doc2g (ENSPEMG00000005234) #9	Nudt8 (ENSPEMG00000018440)	Tbx10 (ENSPEMG00000017754)	ENSPEMG00000014977 #12	Aldh3b2 (ENSPEMG00000026919) #13	Aldh3b3 (ENSPEMG00000024395) #13	Unc93b1 (ENSPEMG00000015773) #16	Aldh3b1 (ENSPEMG00000026438) #17	Ndufs8 (ENSPEMG00000014723) #18	Tcirg1 (ENSPEMG00000007012) #19	Chka (ENSPEMG00000010890)	Kmt5b (ENSPEMG00000013458) #20	1810055G02Rik (ENSPEMG00000016140) #21	Lrp5 (ENSPEMG00000011601) #22	Ppp6r3 (ENSPEMG00000018116) #23	Gal (ENSPEMG00000013588) #24	Tesmin (ENSPEMG00000019187) #25	Cpt1a (ENSPEMG00000003628) #26	Mrpl21 (ENSPEMG00000015425) #27	Ighmbp2 (ENSPEMG00000017775) #28	Mrgprd (ENSPEMG00000004118) #29	Mrgprf (ENSPEMG00000025731) #30	Tpcn2 (ENSPEMG00000018425) #31	Smim38 (ENSPEMG00000019158) #32	Ccnd1 (ENSPEMG00000018939) #35	LTO1 (ENSPEMG00000008663) #36	ENSPEMG00000027742	Fgf15 (ENSPEMG00000008128)	Fgf4 (ENSPEMG00000018637)
Murinae	ANCESTRAL SPECIES		ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b.e #13	ENSGT00940000155904.e.b.f #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Mus	ANCESTRAL SPECIES		ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b.e #13	ENSGT00940000155904.e.b.f #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b.e #13	ENSGT00940000155904.e.b.f #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535.e #27	ENSGT00930000151035.a #28
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b.e #13	ENSGT00940000155904.e.b.f #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535.e #27	ENSGT00930000151035.a #28
Mus_C	ANCESTRAL SPECIES	25	ENSGT00940000164125	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b.e #13	ENSGT00920000150159	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535.e #27	ENSGT00930000151035.a #28
Steppe mouse	MODERN SPECIES	2566										Aldh3b1 (ENSMSIG00000012641) #17	Ndufs8 (ENSMSIG00000012673) #18	Tcirg1 (ENSMSIG00000012689) #19	Chka (ENSMSIG00000012948)	Kmt5b (ENSMSIG00000013087) #20	1810055G02Rik (ENSMSIG00000013200) #21	Lrp5 (ENSMSIG00000013219) #22	Ppp6r3 (ENSMSIG00000013276) #23	Tesmin (ENSMSIG00000014016) #25	ENSMSIG00000014054 #24	Cpt1a (ENSMSIG00000014070) #26	ENSMSIG00000014116	Mrpl21 (ENSMSIG00000014121) #27	Ighmbp2 (ENSMSIG00000014147) #28
spretus	MODERN SPECIES	10	Gstp3 (MGP_SPRETEiJ_G0023400)	Ndufv1 (MGP_SPRETEiJ_G0023399) #8	Doc2g (MGP_SPRETEiJ_G0023398) #9	Nudt8 (MGP_SPRETEiJ_G0023397)	Tbx10 (MGP_SPRETEiJ_G0023396)	Acy3 (MGP_SPRETEiJ_G0023395) #12	MGP_SPRETEiJ_G0023394	Unc93b1 (MGP_SPRETEiJ_G0023393) #16	Aldh3b1 (MGP_SPRETEiJ_G0023392) #17	Ndufs8 (MGP_SPRETEiJ_G0023391) #18	Tcirg1 (MGP_SPRETEiJ_G0023390) #19	MGP_SPRETEiJ_G0023389 #13	Chka (MGP_SPRETEiJ_G0023388)	Kmt5b (MGP_SPRETEiJ_G0023387) #20	1810055G02Rik (MGP_SPRETEiJ_G0023386) #21	Lrp5 (MGP_SPRETEiJ_G0023385) #22	Ppp6r3 (MGP_SPRETEiJ_G0023384) #23	MGP_SPRETEiJ_G0023383 #24	Tesmin (MGP_SPRETEiJ_G0023382) #25	Cpt1a (MGP_SPRETEiJ_G0023381) #26	Ighmbp2 (MGP_SPRETEiJ_G0014700) #28
Mouse	MODERN SPECIES	10	Gstp1 (ENSMUSG00000060803) #7	Ndufv1 (ENSMUSG00000037916) #8	Doc2g (ENSMUSG00000024871) #9	Nudt8 (ENSMUSG00000110949)	Tbx10 (ENSMUSG00000037477)	Acy3 (ENSMUSG00000024866) #12	Aldh3b2 (ENSMUSG00000075296) #13	Aldh3b3 (ENSMUSG00000037263) #13	Unc93b1 (ENSMUSG00000036908) #16	Aldh3b1 (ENSMUSG00000024885) #17	Ndufs8 (ENSMUSG00000059734) #18	Tcirg1 (ENSMUSG00000001750) #19	Chka (ENSMUSG00000024843)	Kmt5b (ENSMUSG00000045098) #20	1810055G02Rik (ENSMUSG00000035372) #21	Lrp5 (ENSMUSG00000024913) #22	Ppp6r3 (ENSMUSG00000024908) #23	Gal (ENSMUSG00000024907) #24	Tesmin (ENSMUSG00000024905) #25	Cpt1a (ENSMUSG00000024900) #26	Mrpl21 (ENSMUSG00000024829) #27	Ighmbp2 (ENSMUSG00000024831) #28
Ryukyu mouse	MODERN SPECIES	10	MGP_CAROLIEiJ_G0022484 #7	Ndufv1 (MGP_CAROLIEiJ_G0022483) #8	Doc2g (MGP_CAROLIEiJ_G0022482) #9	Nudt8 (MGP_CAROLIEiJ_G0022481)	Tbx10 (MGP_CAROLIEiJ_G0022480)	Acy3 (MGP_CAROLIEiJ_G0022479) #12	Aldh3b2 (MGP_CAROLIEiJ_G0022478) #13	MGP_CAROLIEiJ_G0022477	Unc93b1 (MGP_CAROLIEiJ_G0022476) #16	Aldh3b1 (MGP_CAROLIEiJ_G0022475) #17	Ndufs8 (MGP_CAROLIEiJ_G0022474) #18	Tcirg1 (MGP_CAROLIEiJ_G0022473) #19	Chka (MGP_CAROLIEiJ_G0022472)	Kmt5b (MGP_CAROLIEiJ_G0022471) #20	1810055G02Rik (MGP_CAROLIEiJ_G0022470) #21	Lrp5 (MGP_CAROLIEiJ_G0022469) #22	Ppp6r3 (MGP_CAROLIEiJ_G0022468) #23	MGP_CAROLIEiJ_G0022467 #24	Tesmin (MGP_CAROLIEiJ_G0022466) #25	Cpt1a (MGP_CAROLIEiJ_G0022465) #26	Mrpl21 (MGP_CAROLIEiJ_G0022464) #27	Ighmbp2 (MGP_CAROLIEiJ_G0022463) #28
Shrew mouse	MODERN SPECIES		MGP_PahariEiJ_G0013981 #7	Ndufv1 (MGP_PahariEiJ_G0013980) #8	Doc2g (MGP_PahariEiJ_G0013979) #9	Nudt8 (MGP_PahariEiJ_G0013978)	Tbx10 (MGP_PahariEiJ_G0013977)	Acy3 (MGP_PahariEiJ_G0013976) #12	Aldh3b2 (MGP_PahariEiJ_G0013975) #13	MGP_PahariEiJ_G0013974	Unc93b1 (MGP_PahariEiJ_G0013973) #16	Aldh3b1 (MGP_PahariEiJ_G0013972) #17	Ndufs8 (MGP_PahariEiJ_G0013971) #18	Tcirg1 (MGP_PahariEiJ_G0013970) #19	Chka (MGP_PahariEiJ_G0013969)	Kmt5b (MGP_PahariEiJ_G0013968) #20	1810055G02Rik (MGP_PahariEiJ_G0013967) #21	Lrp5 (MGP_PahariEiJ_G0013966) #22	Ppp6r3 (MGP_PahariEiJ_G0013965) #23	MGP_PahariEiJ_G0013964 #24	Tesmin (MGP_PahariEiJ_G0013963) #25	Cpt1a (MGP_PahariEiJ_G0013962) #26	MGP_PahariEiJ_G0013961 #27	Ighmbp2 (MGP_PahariEiJ_G0013960) #28	Mrgprd (MGP_PahariEiJ_G0013959) #29	Mrgprf (MGP_PahariEiJ_G0013958) #30	Tpcn2 (MGP_PahariEiJ_G0013957) #31	Ccnd1 (MGP_PahariEiJ_G0013956) #35	MGP_PahariEiJ_G0013955 #36	Fgf15 (MGP_PahariEiJ_G0013954)	Fgf4 (MGP_PahariEiJ_G0013953)	Fgf3 (MGP_PahariEiJ_G0013952)	Ano1 (MGP_PahariEiJ_G0013951)
Rat	MODERN SPECIES		Nudt8 (ENSRNOG00000017955)	Acy3 (ENSRNOG00000017901) #12	Tbx10 (ENSRNOG00000017944)	Aldh3b2 (ENSRNOG00000068138) #13	ENSRNOG00000069460 #17	ENSRNOG00000066970 #13	LOC120099971 (ENSRNOG00000017872) #13	Unc93b1 (ENSRNOG00000017703) #16	Aldh3b1 (ENSRNOG00000017512) #17	Ndufs8 (ENSRNOG00000017446) #18	Tcirg1 (ENSRNOG00000017220) #19	Chka (ENSRNOG00000016791)	Kmt5b (ENSRNOG00000016790) #20	AABR07006081.1 (ENSRNOG00000016597)	RGD1311946 (ENSRNOG00000025245) #21	Lrp5 (ENSRNOG00000015911) #22	Ppp6r3 (ENSRNOG00000015540) #23	Gal (ENSRNOG00000015156) #24	Tesmin (ENSRNOG00000014671) #25	Cpt1a (ENSRNOG00000014254) #26	Mrpl21 (ENSRNOG00000013845) #27	Ighmbp2 (ENSRNOG00000013456) #28	Mrgprd (ENSRNOG00000013448) #29	Mrgprf (ENSRNOG00000013426) #30	Tpcn2 (ENSRNOG00000013387) #31	Ccnd1 (ENSRNOG00000020918) #35	Lto1 (ENSRNOG00000020903) #36	Fgf19 (ENSRNOG00000020899)	Fgf4 (ENSRNOG00000020890)	Fgf3 (ENSRNOG00000020888)	Ano1 (ENSRNOG00000020865)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1324								Nudt8 (ENSNGAG00000002777)	ENSNGAG00000007366	Unc93b1 (ENSNGAG00000010893) #16	Aldh3b1 (ENSNGAG00000012520) #17	Ndufs8 (ENSNGAG00000013139) #18	Tcirg1 (ENSNGAG00000014303) #19	Chka (ENSNGAG00000017194)	Kmt5b (ENSNGAG00000018362) #20	Lrp5 (ENSNGAG00000013122) #22	ENSNGAG00000012705	ENSNGAG00000016433 #21	Ppp6r3 (ENSNGAG00000020310) #23	Gal (ENSNGAG00000021287) #24	Tesmin (ENSNGAG00000022272) #25	Cpt1a (ENSNGAG00000023574) #26	Mrpl21 (ENSNGAG00000023813) #27	Ighmbp2 (ENSNGAG00000006566) #28	Mrgprf (ENSNGAG00000021640) #30
Lesser Egyptian jerboa	MODERN SPECIES	60	ENSJJAG00000023512 #7	Ndufv1 (ENSJJAG00000017874) #8	Doc2g (ENSJJAG00000021341) #9	Nudt8 (ENSJJAG00000023328)	Tbx10 (ENSJJAG00000022634)	Acy3 (ENSJJAG00000019193) #12	ENSJJAG00000023409 #13	Unc93b1 (ENSJJAG00000023583) #16	Aldh3b1 (ENSJJAG00000020011) #17	Ndufs8 (ENSJJAG00000005023) #18	Tcirg1 (ENSJJAG00000017427) #19	Chka (ENSJJAG00000012227)	ENSJJAG00000017165 #20	1810055G02Rik (ENSJJAG00000023128) #21	ENSJJAG00000012387	Lrp5 (ENSJJAG00000015575) #22	Ppp6r3 (ENSJJAG00000012747) #23	Gal (ENSJJAG00000015277) #24	Tesmin (ENSJJAG00000019166) #25	Cpt1a (ENSJJAG00000019639) #26	Mrpl21 (ENSJJAG00000018455) #27	Ighmbp2 (ENSJJAG00000022964) #28	Mrgprf (ENSJJAG00000017168) #30	Tpcn2 (ENSJJAG00000019473) #31	ENSJJAG00000000500	Mro (ENSJJAG00000018866)	ENSJJAG00000007096	Ska1 (ENSJJAG00000008382)	Cxxc1 (ENSJJAG00000022206)	Mbd1 (ENSJJAG00000022859)	ENSJJAG00000023145
Kangaroo rat	MODERN SPECIES	373	Cabp2 (ENSDORG00000014527)	Gstp3 (ENSDORG00000024771)	ENSDORG00000002063 #7	Ndufv1 (ENSDORG00000010074) #8	Doc2g (ENSDORG00000026896) #9	ENSDORG00000010072 #10	Tbx10 (ENSDORG00000010070)	Acy3 (ENSDORG00000027105) #12	ENSDORG00000027104 #13	Unc93b1 (ENSDORG00000003564) #16	Aldh3b1 (ENSDORG00000003566) #17	ENSDORG00000003567	Tcirg1 (ENSDORG00000012469) #19	Chka (ENSDORG00000012471)	ENSDORG00000015449 #20	Lrp5 (ENSDORG00000003026) #22	Ppp6r3 (ENSDORG00000015410) #23	ENSDORG00000013895 #25	Cpt1a (ENSDORG00000011817) #26	Mrpl21 (ENSDORG00000025967) #27	Ighmbp2 (ENSDORG00000026350) #28	Mrgprd (ENSDORG00000023697) #29	Mrgprf (ENSDORG00000009826) #30	Tpcn2 (ENSDORG00000002980) #31	ENSDORG00000029122 #35	LTO1 (ENSDORG00000012520) #36	ENSDORG00000024888	Ano1 (ENSDORG00000009084)	Ppfia1 (ENSDORG00000016082)	Cttn (ENSDORG00000009315)	Shank2 (ENSDORG00000011912)
Lagomorpha	ANCESTRAL SPECIES	263									ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23
Pika	MODERN SPECIES	2661																LRP5 (ENSOPRG00000000764) #22
Rabbit	MODERN SPECIES	652												ENSOCUG00000037783 #16	ENSOCUG00000039281 #17	KMT5B (ENSOCUG00000002778) #20	ENSOCUG00000027517	ENSOCUG00000013645 #22	PPP6R3 (ENSOCUG00000006068) #23
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000163889 #10	ENSGT00940000163374	ENSGT01100000264273	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000163435.e.a	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000163435.e.a	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Suina	ANCESTRAL SPECIES	14	ENSGT00940000159796	ENSGT00940000164125	ENSGT00940000163435.e.a	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Pig	MODERN SPECIES	10	CABP2 (ENSSSCG00000020764)	ENSSSCG00000060071	ENSSSCG00000032003	NDUFV1 (ENSSSCG00000012896) #8	ENSSSCG00000052603 #9	ENSSSCG00000035645	TBX10 (ENSSSCG00000034410) #11	ALDH3B2 (ENSSSCG00000026349) #13	UNC93B1 (ENSSSCG00000012893) #16	ENSSSCG00000028501 ##13	NDUFS8 (ENSSSCG00000037455) #18	TCIRG1 (ENSSSCG00000012890) #19	CHKA (ENSSSCG00000012889)	KMT5B (ENSSSCG00000031459) #20	ENSSSCG00000012886 #21	LRP5 (ENSSSCG00000012885) #22	PPP6R3 (ENSSSCG00000012884) #23	GAL (ENSSSCG00000012883) #24	TESMIN (ENSSSCG00000012882) #25	CPT1A (ENSSSCG00000012880) #26	ENSSSCG00000012879 #27	IGHMBP2 (ENSSSCG00000012878) #28	ENSSSCG00000042011 #29	MRGPRF (ENSSSCG00000034441) #30	TPCN2 (ENSSSCG00000012875) #31	CCND1 (ENSSSCG00000037900) #35	LTO1 (ENSSSCG00000012874) #36	FGF19 (ENSSSCG00000012871)	FGF4 (ENSSSCG00000012870)	FGF3 (ENSSSCG00000061049)	ANO1 (ENSSSCG00000024158)
Chacoan peccary	MODERN SPECIES	921	CABP2 (ENSCWAG00000007074)	ENSCWAG00000007049	ENSCWAG00000007036	NDUFV1 (ENSCWAG00000006939) #8	ENSCWAG00000006879 #9	ENSCWAG00000006858	TBX10 (ENSCWAG00000006811) #11	ALDH3B2 (ENSCWAG00000006631) #13	UNC93B1 (ENSCWAG00000006584) #16	ENSCWAG00000006537 ##13	NDUFS8 (ENSCWAG00000006464) #18	TCIRG1 (ENSCWAG00000006382) #19	CHKA (ENSCWAG00000006285)	KMT5B (ENSCWAG00000006216) #20	ENSCWAG00000006195 #21	LRP5 (ENSCWAG00000006098) #22	PPP6R3 (ENSCWAG00000005865) #23	GAL (ENSCWAG00000005790) #24	TESMIN (ENSCWAG00000005668) #25	CPT1A (ENSCWAG00000005608) #26	MRPL21 (ENSCWAG00000005572) #27	IGHMBP2 (ENSCWAG00000005480) #28	MRGPRF (ENSCWAG00000005456) #30	TPCN2 (ENSCWAG00000005384) #31	CCND1 (ENSCWAG00000005332) #35	LTO1 (ENSCWAG00000005292) #36	FGF19 (ENSCWAG00000005256)	FGF4 (ENSCWAG00000005233)	FGF3 (ENSCWAG00000005211)	ANO1 (ENSCWAG00000005024)	FADD (ENSCWAG00000004977)
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000163435.e.a	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Camelidae	ANCESTRAL SPECIES	18	ENSGT00940000164125	ENSGT00940000163435.e.a	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000163374.g	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182	ENSGT00390000002105
Arabian camel	MODERN SPECIES	1	ENSCDRG00005010431	GSTP1-1 (ENSCDRG00005010333)	NDUFV1 (ENSCDRG00005010077) #8	ENSCDRG00005010025 #9	NUDT8 (ENSCDRG00005009988) #10	ENSCDRG00005009949	ALDH3B2 (ENSCDRG00005009823) #13	ENSCDRG00005009764	UNC93B1 (ENSCDRG00005009668) #16	ALDH3B1 (ENSCDRG00005009325) #17	NDUFS8 (ENSCDRG00005009196) #18	TCIRG1 (ENSCDRG00005009035) #19	CHKA (ENSCDRG00005008677)	KMT5B (ENSCDRG00005008575) #20	ENSCDRG00005008524 #21	ENSCDRG00005008491 #22	PPP6R3 (ENSCDRG00005007732) #23	GAL (ENSCDRG00005007648) #24	TESMIN (ENSCDRG00005007444) #25	CPT1A (ENSCDRG00005007333) #26	MRPL21 (ENSCDRG00005007269) #27	IGHMBP2 (ENSCDRG00005007128) #28	MRGPRF (ENSCDRG00005007035) #30	TPCN2 (ENSCDRG00005006714) #31	CCND1 (ENSCDRG00005006610) #35	LTO1 (ENSCDRG00005021470) #36	FGF19 (ENSCDRG00005021465)	FGF4 (ENSCDRG00005021463)	ENSCDRG00005021451	ANO1 (ENSCDRG00005021443)	FADD (ENSCDRG00005021431)
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT01100000264273	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT01070000254034 #32	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Pecora	ANCESTRAL SPECIES	13	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Yarkand deer	MODERN SPECIES	11	ENSCHYG00000003387	ENSCHYG00000003427	NDUFV1 (ENSCHYG00000003440) #8	ENSCHYG00000003458 #9	ENSCHYG00000003477	TBX10 (ENSCHYG00000003486) #11	ALDH3B2 (ENSCHYG00000003514) #13	ENSCHYG00000003548	UNC93B1 (ENSCHYG00000003557) #16	ALDH3B1 (ENSCHYG00000003612) #17	NDUFS8 (ENSCHYG00000003690) #18	TCIRG1 (ENSCHYG00000003734) #19	CHKA (ENSCHYG00000003799)	KMT5B (ENSCHYG00000003849) #20	ENSCHYG00000003880	LRP5 (ENSCHYG00000003897) #22	PPP6R3 (ENSCHYG00000003967) #23	GAL (ENSCHYG00000004104) #24	TESMIN (ENSCHYG00000004115) #25	CPT1A (ENSCHYG00000004136) #26	ENSCHYG00000004181 #27	IGHMBP2 (ENSCHYG00000004233) #28	ENSCHYG00000004308 #29	ENSCHYG00000004314 #29	MRGPRF (ENSCHYG00000000036) #30	TPCN2 (ENSCHYG00000000093) #31	CCND1 (ENSCHYG00000000255) #35	LTO1 (ENSCHYG00000000282) #36	FGF19 (ENSCHYG00000000308)	FGF4 (ENSCHYG00000000320)	FGF3 (ENSCHYG00000000327)
Percora_a	ANCESTRAL SPECIES	16	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Siberian musk deer	MODERN SPECIES	1226	ENSMMSG00000023744	ENSMMSG00000023730	NDUFV1 (ENSMMSG00000023713) #8	ENSMMSG00000023708 #9	ENSMMSG00000023706	ENSMMSG00000023700	TBX10 (ENSMMSG00000023697) #11	ALDH3B2 (ENSMMSG00000023685) #13	UNC93B1 (ENSMMSG00000023668) #16	ENSMMSG00000023640 ##13	NDUFS8 (ENSMMSG00000023617) #18	TCIRG1 (ENSMMSG00000023600) #19	CHKA (ENSMMSG00000023562)	KMT5B (ENSMMSG00000023533) #20	ENSMMSG00000023522 #21	LRP5 (ENSMMSG00000023500) #22	PPP6R3 (ENSMMSG00000023347) #23	GAL (ENSMMSG00000023307) #24	TESMIN (ENSMMSG00000023272) #25	CPT1A (ENSMMSG00000023241) #26	MRPL21 (ENSMMSG00000023225) #27	IGHMBP2 (ENSMMSG00000023204) #28	ENSMMSG00000023188 #29	MRGPRF (ENSMMSG00000023179) #30	TPCN2 (ENSMMSG00000023131) #31	CCND1 (ENSMMSG00000023111) #35	LTO1 (ENSMMSG00000023097) #36	FGF19 (ENSMMSG00000023088)	FGF4 (ENSMMSG00000023082)	FGF3 (ENSMMSG00000023074)
Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Caprinae	ANCESTRAL SPECIES	20	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000163374.g	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Rambouillet Sheep	MODERN SPECIES	13	ENSOARG00020013487	NDUFV1 (ENSOARG00020013585) #8	ENSOARG00020013607 #9	NUDT8 (ENSOARG00020013703) #10	TBX10 (ENSOARG00020013801) #11	ALDH3B2 (ENSOARG00020013912) #13	ENSOARG00020014001	UNC93B1 (ENSOARG00020014035) #16	ENSOARG00020014110 ##13	NDUFS8 (ENSOARG00020014383) #18	ENSOARG00020014473 #19	ENSOARG00020014508 #19	CHKA (ENSOARG00020014607)	KMT5B (ENSOARG00020014904) #20	ENSOARG00020015122 #21	LRP5 (ENSOARG00020015176) #22	PPP6R3 (ENSOARG00020015496) #23	GAL (ENSOARG00020016179) #24	TESMIN (ENSOARG00020016224) #25	CPT1A (ENSOARG00020016497) #26	ENSOARG00020016650	ENSOARG00020016715 #27	IGHMBP2 (ENSOARG00020016777) #28	ENSOARG00020016943 #29	MRGPRF (ENSOARG00020017039) #30	SMIM38 (ENSOARG00020017868) #32	CCND1 (ENSOARG00020018440) #35	LTO1 (ENSOARG00020018493) #36	FGF19 (ENSOARG00020018648)	FGF4 (ENSOARG00020018705)	FGF3 (ENSOARG00020018755)
Goat	MODERN SPECIES	21	CABP2 (ENSCHIG00000009106)	ENSCHIG00000015669	ENSCHIG00000014133	NDUFV1 (ENSCHIG00000022888) #8	ENSCHIG00000020228 #9	ENSCHIG00000019709	ENSCHIG00000026949	ALDH3B2 (ENSCHIG00000016769) #13	UNC93B1 (ENSCHIG00000026943) #16	ENSCHIG00000026059 ##13	ENSCHIG00000013308 #18	TCIRG1 (ENSCHIG00000021975) #19	CHKA (ENSCHIG00000014786)	KMT5B (ENSCHIG00000025585) #20	ENSCHIG00000016165 #21	LRP5 (ENSCHIG00000019530) #22	PPP6R3 (ENSCHIG00000020367) #23	GAL (ENSCHIG00000024788) #24	TESMIN (ENSCHIG00000026439) #25	ENSCHIG00000019619	CPT1A (ENSCHIG00000015344) #26	MRPL21 (ENSCHIG00000020757) #27	IGHMBP2 (ENSCHIG00000011703) #28	ENSCHIG00000008487 #29	MRGPRF (ENSCHIG00000024512) #30	TPCN2 (ENSCHIG00000024724) #31	CCND1 (ENSCHIG00000010534) #35	LTO1 (ENSCHIG00000016576) #36	FGF19 (ENSCHIG00000012980)	FGF4 (ENSCHIG00000010447)	FGF3 (ENSCHIG00000001606)
Bovinae	ANCESTRAL SPECIES	24	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
American bison	MODERN SPECIES	3011	CDK2AP2 (ENSBBBG00000011578)	CABP2 (ENSBBBG00000002134)	ENSBBBG00000011647	ENSBBBG00000011688	NDUFV1 (ENSBBBG00000006837) #8	ENSBBBG00000002170	TBX10 (ENSBBBG00000011733) #11	ALDH3B2 (ENSBBBG00000011745) #13	UNC93B1 (ENSBBBG00000011762) #16	ENSBBBG00000008099 ##13	NDUFS8 (ENSBBBG00000011803) #18	TCIRG1 (ENSBBBG00000011829) #19	CHKA (ENSBBBG00000002204)	KMT5B (ENSBBBG00000011927) #20	ENSBBBG00000008495 #21	LRP5 (ENSBBBG00000007211) #22	PPP6R3 (ENSBBBG00000002323) #23	GAL (ENSBBBG00000007883) #24	TESMIN (ENSBBBG00000012323) #25	CPT1A (ENSBBBG00000012354) #26	MRPL21 (ENSBBBG00000002340) #27	ENSBBBG00000012361	MRGPRD (ENSBBBG00000002343) #29	MRGPRF (ENSBBBG00000012368) #30	TPCN2 (ENSBBBG00000012427) #31	ENSBBBG00000002380 #35	ENSBBBG00000002382 #35	LTO1 (ENSBBBG00000012464) #36	FGF19 (ENSBBBG00000012472)	FGF4 (ENSBBBG00000012474)	ANO1 (ENSBBBG00000012506)
Bos	ANCESTRAL SPECIES	11	ENSGT01100000264273	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Hybrid Bos Indicus	MODERN SPECIES	21	CABP2 (ENSBIXG00005021047)	ENSBIXG00005021109	ENSBIXG00005021129	NDUFV1 (ENSBIXG00005021193) #8	ENSBIXG00005007675 #9	TBX10 (ENSBIXG00005021245) #11	ENSBIXG00005021275 #13	UNC93B1 (ENSBIXG00005021297) #16	ENSBIXG00005021420 ##13	NDUFS8 (ENSBIXG00005006662) #18	TCIRG1 (ENSBIXG00005021556) #19	ENSBIXG00005006157	KMT5B (ENSBIXG00005021706) #20	ENSBIXG00005021733 #21	ENSBIXG00005021753	LRP5 (ENSBIXG00005005995) #22	PPP6R3 (ENSBIXG00005003728) #23	ENSBIXG00005022087 #24	TESMIN (ENSBIXG00005022165) #25	CPT1A (ENSBIXG00005022352) #26	ENSBIXG00005022450 #27	IGHMBP2 (ENSBIXG00005022495) #28	ENSBIXG00005022523 #29	ENSBIXG00005022549 #29	MRGPRF (ENSBIXG00005022567) #30	TPCN2 (ENSBIXG00005005450) #31	CCND1 (ENSBIXG00005003878) #35	LTO1 (ENSBIXG00005022702) #36	FGF19 (ENSBIXG00005022715)	FGF4 (ENSBIXG00005022740)	FGF3 (ENSBIXG00005003897)
Cow	MODERN SPECIES	21	CDK2AP2 (ENSBTAG00000002121)	CABP2 (ENSBTAG00000022209)	GSTP1 (ENSBTAG00000003548)	GSTP1 (ENSBTAG00000051210)	NDUFV1 (ENSBTAG00000021776) #8	DOC2G (ENSBTAG00000021777) #9	TBX10 (ENSBTAG00000011816) #11	ENSBTAG00000012054 #13	UNC93B1 (ENSBTAG00000001193) #16	ALDH3B1 (ENSBTAG00000013093) ##13	NDUFS8 (ENSBTAG00000012072) #18	TCIRG1 (ENSBTAG00000000292) #19	CHKA (ENSBTAG00000010304)	KMT5B (ENSBTAG00000001185) #20	C29H11orf24 (ENSBTAG00000004392) #21	LRP5 (ENSBTAG00000005903) #22	ENSBTAG00000011830	PPP6R3 (ENSBTAG00000009584) #23	GAL (ENSBTAG00000009393) #24	TESMIN (ENSBTAG00000053218) #25	CPT1A (ENSBTAG00000021999) #26	MRPL21 (ENSBTAG00000004348) #27	IGHMBP2 (ENSBTAG00000022185) #28	ENSBTAG00000046090 #29	ENSBTAG00000016774 #29	MRGPRF (ENSBTAG00000015185) #30	TPCN2 (ENSBTAG00000015183) #31	LTO1 (ENSBTAG00000011898)	CCND1 (ENSBTAG00000017514) #35	FGF19 (ENSBTAG00000017285)	FGF4 (ENSBTAG00000012563)
Bos_a	ANCESTRAL SPECIES	34	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00940000155904.f ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00990000205605	ENSGT00940000160601	ENSGT00940000158825
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	2316									ENSBMUG00000004387 ##13	NDUFS8 (ENSBMUG00000004400) #18	TCIRG1 (ENSBMUG00000004675) #19	CHKA (ENSBMUG00000005017)	KMT5B (ENSBMUG00000005099) #20	ENSBMUG00000005121 #21	ENSBMUG00000005125	ENSBMUG00000005142 #22	ENSBMUG00000005168 #22	PPP6R3 (ENSBMUG00000005493) #23	GAL (ENSBMUG00000005636) #24	TESMIN (ENSBMUG00000005656) #25	CPT1A (ENSBMUG00000005671) #26	MRPL21 (ENSBMUG00000005686) #27	IGHMBP2 (ENSBMUG00000005704) #28	ENSBMUG00000005724 #29	ENSBMUG00000005759 #29	MRGPRF (ENSBMUG00000005775) #30	TPCN2 (ENSBMUG00000005793) #31	ENSBMUG00000005824 #35	ENSBMUG00000005837 #35	LTO1 (ENSBMUG00000005875) #36	ENSBMUG00000005895
Wild yak	MODERN SPECIES	2316								ENSBMUG00000004387 ##13	NDUFS8 (ENSBMUG00000004400) #18	TCIRG1 (ENSBMUG00000004675) #19	CHKA (ENSBMUG00000005017)	KMT5B (ENSBMUG00000005099) #20	ENSBMUG00000005121 #21	ENSBMUG00000005125	ENSBMUG00000005142 #22	ENSBMUG00000005168 #22	PPP6R3 (ENSBMUG00000005493) #23	GAL (ENSBMUG00000005636) #24	TESMIN (ENSBMUG00000005656) #25	CPT1A (ENSBMUG00000005671) #26	MRPL21 (ENSBMUG00000005686) #27	IGHMBP2 (ENSBMUG00000005704) #28	ENSBMUG00000005724 #29	ENSBMUG00000005759 #29	MRGPRF (ENSBMUG00000005775) #30	TPCN2 (ENSBMUG00000005793) #31	ENSBMUG00000005824 #35	ENSBMUG00000005837 #35	LTO1 (ENSBMUG00000005875) #36	ENSBMUG00000005895	ANO1 (ENSBMUG00000005970)
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426.d #36	ENSGT00390000009426.c.a.a.a #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Blue whale	MODERN SPECIES	19	PITPNM1 (ENSBMSG00010004775)	CABP2 (ENSBMSG00010004797)	ENSBMSG00010004811	ENSBMSG00010004827	NDUFV1 (ENSBMSG00010004841) #8	ENSBMSG00010004866 #9	ENSBMSG00010004879	TBX10 (ENSBMSG00010004883) #11	ALDH3B2 (ENSBMSG00010004892) #13	UNC93B1 (ENSBMSG00010004898) #16	ALDH3B1 (ENSBMSG00010004922) #17	NDUFS8 (ENSBMSG00010004952) #18	CHKA (ENSBMSG00010004966)	KMT5B (ENSBMSG00010004978) #20	ENSBMSG00010004983	LRP5 (ENSBMSG00010004990) #22	PPP6R3 (ENSBMSG00010005022) #23	GAL (ENSBMSG00010005047) #24	CPT1A (ENSBMSG00010005084) #26	ENSBMSG00010005133	MRPL21 (ENSBMSG00010005141) #27	IGHMBP2 (ENSBMSG00010005154) #28	MRGPRF (ENSBMSG00010005176) #30	TPCN2 (ENSBMSG00010005216) #31	CCND1 (ENSBMSG00010005276) #35	ENSBMSG00010005297 #36	FGF19 (ENSBMSG00010005311)	FGF4 (ENSBMSG00010005321)	FGF3 (ENSBMSG00010005331)	ANO1 (ENSBMSG00010005353)	FADD (ENSBMSG00010005386)
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426.d #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431.jb #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426.d #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000159796	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431.jb #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00390000018351.n	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426.d #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431.jb #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00390000018351.n	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426.c.a.a.a #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Narwhal	MODERN SPECIES	314	CABP2 (ENSMMNG00015020136)	ENSMMNG00015020200	ENSMMNG00015020229	NDUFV1 (ENSMMNG00015020258) #8	ENSMMNG00015020291 #9	ENSMMNG00015020305	TBX10 (ENSMMNG00015020328) #11	ALDH3B2 (ENSMMNG00015020368) #13	UNC93B1 (ENSMMNG00015020395) #16	ALDH3B1 (ENSMMNG00015020460) #17	NDUFS8 (ENSMMNG00015020550) #18	TCIRG1 (ENSMMNG00015020611) #19	CHKA (ENSMMNG00015020690)	KMT5B (ENSMMNG00015020754) #20	ENSMMNG00015020790 #21	LRP5 (ENSMMNG00015020832) #22	PPP6R3 (ENSMMNG00015020961) #23	GAL (ENSMMNG00015021087) #24	TESMIN (ENSMMNG00015021117) #25	GATC (ENSMMNG00015021129)	CPT1A (ENSMMNG00015021158) #26	MRPL21 (ENSMMNG00015021206) #27	IGHMBP2 (ENSMMNG00015021229) #28	ENSMMNG00015021257 #29	MRGPRF (ENSMMNG00015021269) #30	TPCN2 (ENSMMNG00015021380) #31	CCND1 (ENSMMNG00015021479) #35	ENSMMNG00015021499 #36	FGF19 (ENSMMNG00015021518)	FGF4 (ENSMMNG00015021528)	ENSMMNG00015021536
Beluga whale	MODERN SPECIES	7	CABP2 (ENSDLEG00000007398)	ENSDLEG00000007392	ENSDLEG00000007379	NDUFV1 (ENSDLEG00000007370) #8	ENSDLEG00000007368 #9	ENSDLEG00000007357	TBX10 (ENSDLEG00000007345) #11	ENSDLEG00000007341 #13	UNC93B1 (ENSDLEG00000007327) #16	ENSDLEG00000007316 ##13	NDUFS8 (ENSDLEG00000007301) #18	TCIRG1 (ENSDLEG00000007283) #19	CHKA (ENSDLEG00000007265)	KMT5B (ENSDLEG00000007251) #20	ENSDLEG00000007238 #21	LRP5 (ENSDLEG00000006885) #22	PPP6R3 (ENSDLEG00000006813) #23	GAL (ENSDLEG00000006803) #24	ENSDLEG00000006799	TESMIN (ENSDLEG00000006791) #25	CPT1A (ENSDLEG00000006719) #26	MRPL21 (ENSDLEG00000006686) #27	IGHMBP2 (ENSDLEG00000006566) #28	ENSDLEG00000006544 #29	MRGPRF (ENSDLEG00000006538) #30	TPCN2 (ENSDLEG00000006495) #31	CCND1 (ENSDLEG00000006485) #35	ENSDLEG00000006473	ENSDLEG00000006464	FGF4 (ENSDLEG00000006458)	FGF3 (ENSDLEG00000006451)
Vaquita	MODERN SPECIES	19	CDK2AP2 (ENSPSNG00000011634)	CABP2 (ENSPSNG00000011691)	ENSPSNG00000011890	ENSPSNG00000012038	NDUFV1 (ENSPSNG00000012099) #8	ENSPSNG00000012192	TBX10 (ENSPSNG00000012218) #11	ALDH3B2 (ENSPSNG00000012373) #13	UNC93B1 (ENSPSNG00000012748) #16	ENSPSNG00000012832 ##13	NDUFS8 (ENSPSNG00000013024) #18	TCIRG1 (ENSPSNG00000013176) #19	CHKA (ENSPSNG00000013362)	KMT5B (ENSPSNG00000013500) #20	ENSPSNG00000013665 #21	LRP5 (ENSPSNG00000013733) #22	PPP6R3 (ENSPSNG00000014158) #23	GAL (ENSPSNG00000015309) #24	TESMIN (ENSPSNG00000015408) #25	ENSPSNG00000015638	CPT1A (ENSPSNG00000015716) #26	MRPL21 (ENSPSNG00000015914) #27	IGHMBP2 (ENSPSNG00000016024) #28	MRGPRF (ENSPSNG00000016200) #30	TPCN2 (ENSPSNG00000016263) #31	CCND1 (ENSPSNG00000016389) #35	ENSPSNG00000016465 #36	FGF19 (ENSPSNG00000016539)	FGF4 (ENSPSNG00000016594)	ENSPSNG00000016648	ANO1 (ENSPSNG00000016772)
Dolphin	MODERN SPECIES	1371																LRP5 (ENSTTRG00000016402) #22	PPP6R3 (ENSTTRG00000016403) #23
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	7	ANKRD13D (ENSPCTG00005010564)	SSH3 (ENSPCTG00005010770)	POLD4 (ENSPCTG00005011022)	CLCF1 (ENSPCTG00005011093)	ENSPCTG00005011165 #8	ENSPCTG00005011185 #8	ENSPCTG00005011240	ENSPCTG00005011272	UNC93B1 (ENSPCTG00005011356) #16	ALDH3B1 (ENSPCTG00005011416) #17	NDUFS8 (ENSPCTG00005011545) #18	TCIRG1 (ENSPCTG00005011681) #19	CHKA (ENSPCTG00005011739)	KMT5B (ENSPCTG00005012015) #20	C16H11orf24 (ENSPCTG00005012094) #21	LRP5 (ENSPCTG00005012293) #22	PPP6R3 (ENSPCTG00005014547) #23	ENSPCTG00005014980	GAL (ENSPCTG00005014998) #24	TESMIN (ENSPCTG00005015085) #25
Sperm whale	MODERN SPECIES	1098																ENSPCTG00005013393 #22
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Carnivora	ANCESTRAL SPECIES	7	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Caniformia	ANCESTRAL SPECIES	21	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049.f #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Caniformia_b	ANCESTRAL SPECIES	19	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049.f #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Ursidae	ANCESTRAL SPECIES	2	ENSGT00940000164125.b	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049.f #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c.a #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Ursus	ANCESTRAL SPECIES	21	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000163889 #10	ENSGT00940000163374	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049.f #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c.a.a #29
American black bear	MODERN SPECIES	2699																LRP5 (ENSUAMG00000019028) #22
Polar bear	MODERN SPECIES	328	CABP2 (ENSUMAG00000013041)	ENSUMAG00000013046	ENSUMAG00000013053	NDUFV1 (ENSUMAG00000013061) #8	ENSUMAG00000013065 #9	NUDT8 (ENSUMAG00000013078) #10	ENSUMAG00000013092	ENSUMAG00000013104 #13	UNC93B1 (ENSUMAG00000013118) #16	ENSUMAG00000013125 #17	NDUFS8 (ENSUMAG00000013128) #18	ENSUMAG00000013132 #19	CHKA (ENSUMAG00000013148)	KMT5B (ENSUMAG00000013196) #20	ENSUMAG00000013275 #21	LRP5 (ENSUMAG00000013361) #22	PPP6R3 (ENSUMAG00000014110) #23	GAL (ENSUMAG00000014141) #24	TESMIN (ENSUMAG00000014146) #25	CPT1A (ENSUMAG00000014460) #26	MRPL21 (ENSUMAG00000018330) #27	IGHMBP2 (ENSUMAG00000018347) #28	ENSUMAG00000018420 #29
Giant Panda	MODERN SPECIES	7	CABP2 (ENSAMEG00000001006)	ENSAMEG00000001020	NDUFV1 (ENSAMEG00000001049) #8	ENSAMEG00000001078 #9	ENSAMEG00000027070	TBX10 (ENSAMEG00000001098) #11	ALDH3B2 (ENSAMEG00000029412) #13	ENSAMEG00000031445	UNC93B1 (ENSAMEG00000001141) #16	ALDH3B1 (ENSAMEG00000001158) #17	NDUFS8 (ENSAMEG00000001217) #18	TCIRG1 (ENSAMEG00000001230) #19	CHKA (ENSAMEG00000001272)	KMT5B (ENSAMEG00000001298) #20	ENSAMEG00000030515 #21	LRP5 (ENSAMEG00000001320) #22	PPP6R3 (ENSAMEG00000008694) #23	GAL (ENSAMEG00000008690) #24	TESMIN (ENSAMEG00000008676) #25	CPT1A (ENSAMEG00000008595) #26	ENSAMEG00000008591 #27	IGHMBP2 (ENSAMEG00000008568) #28	MRGPRD (ENSAMEG00000027443) #29	MRGPRF (ENSAMEG00000001626) #30	TPCN2 (ENSAMEG00000001559) #31	ENSAMEG00000001950 #35	ENSAMEG00000001983 #36	FGF19 (ENSAMEG00000029958)	FGF4 (ENSAMEG00000001992)	ENSAMEG00000025861	ENSAMEG00000026287
Mustelinae	ANCESTRAL SPECIES	3	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00960000191071	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049.f #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Ferret	MODERN SPECIES	233	CABP2 (ENSMPUG00000003977)	ENSMPUG00000004023	ENSMPUG00000004029	NDUFV1 (ENSMPUG00000004041) #8	ENSMPUG00000004052 #9	ENSMPUG00000004064	TBX10 (ENSMPUG00000004076) #11	ENSMPUG00000004086 #13	UNC93B1 (ENSMPUG00000004165) #16	ALDH3B1 (ENSMPUG00000004179) #17	NDUFS8 (ENSMPUG00000004193) #18	TCIRG1 (ENSMPUG00000004236) #19	CHKA (ENSMPUG00000004254)	KMT5B (ENSMPUG00000004326) #20	ENSMPUG00000004339 #21	LRP5 (ENSMPUG00000004345) #22	PPP6R3 (ENSMPUG00000004357) #23	GAL (ENSMPUG00000004372) #24	TESMIN (ENSMPUG00000004382) #25	CPT1A (ENSMPUG00000004418) #26	MRPL21 (ENSMPUG00000004430) #27	IGHMBP2 (ENSMPUG00000004439) #28	MRGPRD (ENSMPUG00000004515) #29	MRGPRF (ENSMPUG00000004529) #30	TPCN2 (ENSMPUG00000004534) #31	ENSMPUG00000004558	CCND1 (ENSMPUG00000004567) #35	FGF19 (ENSMPUG00000004606)	FGF4 (ENSMPUG00000004613)	ENSMPUG00000004643	ENSMPUG00000004650
American mink	MODERN SPECIES	104	NDUFV1 (ENSNVIG00000012828) #8	ENSNVIG00000012818	ENSNVIG00000012787 #9	TBX10 (ENSNVIG00000012771) #11	ALDH3B2 (ENSNVIG00000012740) #13	ENSNVIG00000012729	UNC93B1 (ENSNVIG00000012714) #16	ENSNVIG00000012672 #17	NDUFS8 (ENSNVIG00000012663) #18	ENSNVIG00000012658 #19	ENSNVIG00000012648 #19	ENSNVIG00000012636 #19	CHKA (ENSNVIG00000012580)	KMT5B (ENSNVIG00000012483) #20	ENSNVIG00000012467 #21	LRP5 (ENSNVIG00000012415) #22	PPP6R3 (ENSNVIG00000011985) #23	ENSNVIG00000011907 #24	TESMIN (ENSNVIG00000011879) #25	CPT1A (ENSNVIG00000011801) #26	MRPL21 (ENSNVIG00000011766) #27	IGHMBP2 (ENSNVIG00000011737) #28	MRGPRD (ENSNVIG00000011721) #29	MRGPRF (ENSNVIG00000011699) #30	TPCN2 (ENSNVIG00000011621) #31	ENSNVIG00000011596 #35	LTO1 (ENSNVIG00000011554) #36	FGF19 (ENSNVIG00000011538)	FGF4 (ENSNVIG00000011535)	FGF3 (ENSNVIG00000011528)	ANO1 (ENSNVIG00000011432)
Canidae	ANCESTRAL SPECIES	13	ENSGT00940000159796	ENSGT00940000164125	ENSGT00940000163435.e.a.b.a.b	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049.e.b #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535.d #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00940000159796	ENSGT00940000164125	ENSGT00940000163435.e.a.b.a.b	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049.e.b #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535.c #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Dingo	MODERN SPECIES	36	CABP2 (ENSCAFG00020001633)	ENSCAFG00020001669	ENSCAFG00020001675	ENSCAFG00020001698 #8	ENSCAFG00020001779 #9	NUDT8 (ENSCAFG00020001816) #10	TBX10 (ENSCAFG00020001823) #11	ALDH3B2 (ENSCAFG00020001840) #13	UNC93B1 (ENSCAFG00020001896) #16	ENSCAFG00020001904 ##13	ENSCAFG00020001910 #18	TCIRG1 (ENSCAFG00020001934) #19	CHKA (ENSCAFG00020001949)	KMT5B (ENSCAFG00020001997) #20	ENSCAFG00020002089 #21	LRP5 (ENSCAFG00020002095) #22	PPP6R3 (ENSCAFG00020002106) #23	GAL (ENSCAFG00020002120) #24	TESMIN (ENSCAFG00020002130) #25	ENSCAFG00020002152	CPT1A (ENSCAFG00020002153) #26
Dog	MODERN SPECIES	9	CABP2 (ENSCAFG00845009417)	ENSCAFG00845009326	GSTP1 (ENSCAFG00845009240)	NDUFV1 (ENSCAFG00845009152) #8	ENSCAFG00845009108 #9	ENSCAFG00845009072	TBX10 (ENSCAFG00845009035) #11	ALDH3B2 (ENSCAFG00845008948) #13	UNC93B1 (ENSCAFG00845008909) #16	ENSCAFG00845008762 ##13	NDUFS8 (ENSCAFG00845008677) #18	TCIRG1 (ENSCAFG00845008465) #19	CHKA (ENSCAFG00845008304)	KMT5B (ENSCAFG00845008157) #20	ENSCAFG00845008076 #21	LRP5 (ENSCAFG00845007778) #22	PPP6R3 (ENSCAFG00845007185) #23	GAL (ENSCAFG00845006857) #24	ENSCAFG00845006839	ENSCAFG00845006803 #25	CPT1A (ENSCAFG00845006637) #26	ENSCAFG00845006503 #27	IGHMBP2 (ENSCAFG00845006112) #28	MRGPRD (ENSCAFG00845006017) #29	MRGPRF (ENSCAFG00845005992) #30	TPCN2 (ENSCAFG00845005889) #31	CCND1 (ENSCAFG00845015348) #35	ENSCAFG00845015244 #36	FGF19 (ENSCAFG00845015136)	FGF4 (ENSCAFG00845015112)	FGF3 (ENSCAFG00845015080)
Red fox	MODERN SPECIES	49	CABP2 (ENSVVUG00000010286)	ENSVVUG00000010271	ENSVVUG00000010240	NDUFV1 (ENSVVUG00000010224) #8	ENSVVUG00000010218 #9	NUDT8 (ENSVVUG00000010211) #10	ENSVVUG00000010192	UNC93B1 (ENSVVUG00000010187) #16	ENSVVUG00000010184 ##13	ENSVVUG00000010174 #18	TCIRG1 (ENSVVUG00000010160) #19	CHKA (ENSVVUG00000010123)	ENSVVUG00000010120	KMT5B (ENSVVUG00000010104) #20	CUNH11orf24 (ENSVVUG00000010101) #21	LRP5 (ENSVVUG00000005065) #22	PPP6R3 (ENSVVUG00000004914) #23	ENSVVUG00000004883 #24	TESMIN (ENSVVUG00000004876) #25	CPT1A (ENSVVUG00000004839) #26	ENSVVUG00000004820 #27	IGHMBP2 (ENSVVUG00000004811) #28	MRGPRF (ENSVVUG00000004804) #30	TPCN2 (ENSVVUG00000004753) #31	CCND1 (ENSVVUG00000004739) #35	ENSVVUG00000004719 #36	ENSVVUG00000004714	FGF19 (ENSVVUG00000004712)	FGF4 (ENSVVUG00000004705)	FGF3 (ENSVVUG00000004701)	ANO1 (ENSVVUG00000004627)
Felidae	ANCESTRAL SPECIES		ENSGT00940000159796	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182	ENSGT00390000002105
Panthera	ANCESTRAL SPECIES	18	ENSGT00940000159796	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182	ENSGT00390000002105
Panthera_a	ANCESTRAL SPECIES	18	ENSGT00940000159796	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182	ENSGT00390000002105
lion	MODERN SPECIES	56														KMT5B (ENSPLOG00000016932) #20	ENSPLOG00000017350 #21	LRP5 (ENSPLOG00000017371) #22	PPP6R3 (ENSPLOG00000017745) #23	GAL (ENSPLOG00000019206) #24	TESMIN (ENSPLOG00000019256) #25	CPT1A (ENSPLOG00000019396) #26	ENSPLOG00000019447 #27	IGHMBP2 (ENSPLOG00000019507) #28	MRGPRF (ENSPLOG00000019791) #30	TPCN2 (ENSPLOG00000019933) #31	CCND1 (ENSPLOG00000020328) #35	LTO1 (ENSPLOG00000020370) #36	FGF19 (ENSPLOG00000020417)	FGF4 (ENSPLOG00000020437)	FGF3 (ENSPLOG00000020465)
leopard	MODERN SPECIES	64	ENSPPRG00000007615	ENSPPRG00000006958	NDUFV1 (ENSPPRG00000006947) #8	ENSPPRG00000006725 #9	ENSPPRG00000006340	TBX10 (ENSPPRG00000006221) #11	ALDH3B2 (ENSPPRG00000006205) #13	UNC93B1 (ENSPPRG00000006045) #16	ENSPPRG00000005565 ##13	NDUFS8 (ENSPPRG00000004781) #18	ENSPPRG00000004705 #19	ENSPPRG00000004626 #19	CHKA (ENSPPRG00000003923)	KMT5B (ENSPPRG00000002092) #20	ENSPPRG00000001623	LRP5 (ENSPPRG00000001607) #22	PPP6R3 (ENSPPRG00000000661) #23	GAL (ENSPPRG00000023433) #24	TESMIN (ENSPPRG00000023616) #25	CPT1A (ENSPPRG00000023904) #26	MRPL21 (ENSPPRG00000024109) #27	IGHMBP2 (ENSPPRG00000024194) #28	MRGPRF (ENSPPRG00000024308) #30	TPCN2 (ENSPPRG00000024406) #31	CCND1 (ENSPPRG00000024642) #35	LTO1 (ENSPPRG00000024675) #36	FGF19 (ENSPPRG00000024723)	FGF4 (ENSPPRG00000024731)	FGF3 (ENSPPRG00000024743)	ANO1 (ENSPPRG00000024762)	FADD (ENSPPRG00000024863)
Tiger	MODERN SPECIES	461			ENSPTIG00000022063	NDUFV1 (ENSPTIG00000021461) #8	ENSPTIG00000019451 #9	ENSPTIG00000018602	TBX10 (ENSPTIG00000017457) #11	ALDH3B2 (ENSPTIG00000010435) #13	ENSPTIG00000008967 #16	ALDH3B1 (ENSPTIG00000003636) #17	NDUFS8 (ENSPTIG00000020944) #18	ENSPTIG00000020468 #19	CHKA (ENSPTIG00000017888)	ENSPTIG00000014475 #20	ENSPTIG00000013831	LRP5 (ENSPTIG00000009714) #22	PPP6R3 (ENSPTIG00000015409) #23	TESMIN (ENSPTIG00000011695) #25	CPT1A (ENSPTIG00000005864) #26	MRPL21 (ENSPTIG00000000955) #27	ENSPTIG00000020123	MRGPRF (ENSPTIG00000019368) #30	TPCN2 (ENSPTIG00000013302) #31	ENSPTIG00000012911 #35	LTO1 (ENSPTIG00000008634) #36	FGF19 (ENSPTIG00000007495)	ANO1 (ENSPTIG00000021763)	ENSPTIG00000007413	PPFIA1 (ENSPTIG00000016893)	CTTN (ENSPTIG00000013925)
Cat	MODERN SPECIES	241	PITPNM1 (ENSFCAG00000001751)	CDK2AP2 (ENSFCAG00000042271)	CABP2 (ENSFCAG00000001754)	GSTP1 (ENSFCAG00000001755)	NDUFV1 (ENSFCAG00000001757) #8	ENSFCAG00000022755 #9	TBX10 (ENSFCAG00000001760) #11	ENSFCAG00000044091 #13	UNC93B1 (ENSFCAG00000002986) #16	ENSFCAG00000026709 ##13	NDUFS8 (ENSFCAG00000002988) #18	TCIRG1 (ENSFCAG00000002995) #19	CHKA (ENSFCAG00000006219)	KMT5B (ENSFCAG00000009067) #20	ENSFCAG00000042941 #21	LRP5 (ENSFCAG00000012666) #22	PPP6R3 (ENSFCAG00000005076) #23	GAL (ENSFCAG00000023993) #24	TESMIN (ENSFCAG00000025862) #25	CPT1A (ENSFCAG00000028060) #26	MRPL21 (ENSFCAG00000005779) #27	ENSFCAG00000049624 #28	IGHMBP2 (ENSFCAG00000010879) #28	ENSFCAG00000052440	MRGPRF (ENSFCAG00000010885) #30	TPCN2 (ENSFCAG00000002792) #31	CCND1 (ENSFCAG00000008358) #35	LTO1 (ENSFCAG00000026606) #36	FGF19 (ENSFCAG00000027163)	FGF4 (ENSFCAG00000036639)	FGF3 (ENSFCAG00000043034)
Laurasiatheria_c	ANCESTRAL SPECIES	20	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Chiroptera	ANCESTRAL SPECIES	14	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Microchiroptera	ANCESTRAL SPECIES	13	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000162915 #17	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Microbat	MODERN SPECIES	1351	PITPNM1 (ENSMLUG00000011222)	CDK2AP2 (ENSMLUG00000011488)	CABP2 (ENSMLUG00000011504)	GSTP1 (ENSMLUG00000011529) #7	NDUFV1 (ENSMLUG00000011539) #8	ENSMLUG00000026150 #9	TBX10 (ENSMLUG00000011576) #11	ENSMLUG00000011588 #12	ALDH3B2 (ENSMLUG00000028367) #13	UNC93B1 (ENSMLUG00000017610) #16	ALDH3B1 (ENSMLUG00000029407) #17	NDUFS8 (ENSMLUG00000017611) #18	TCIRG1 (ENSMLUG00000017612) #19	CHKA (ENSMLUG00000017614)	KMT5B (ENSMLUG00000008196) #20	LRP5 (ENSMLUG00000001206) #22	PPP6R3 (ENSMLUG00000013121) #23	ENSMLUG00000026507 #24
Greater horseshoe bat	MODERN SPECIES	2	ENSRFEG00010021451	ENSRFEG00010021433 #7	NDUFV1 (ENSRFEG00010021407) #8	ENSRFEG00010021394 #9	ENSRFEG00010021387	TBX10 (ENSRFEG00010021376) #11	ACY3 (ENSRFEG00010021361) #12	ENSRFEG00010021357 #13	UNC93B1 (ENSRFEG00010021346) #16	ENSRFEG00010021317 #13	NDUFS8 (ENSRFEG00010021301) #18	TCIRG1 (ENSRFEG00010021289) #19	CHKA (ENSRFEG00010021236)	KMT5B (ENSRFEG00010021206) #20	ENSRFEG00010021193 #21	LRP5 (ENSRFEG00010021140) #22	PPP6R3 (ENSRFEG00010021009) #23	GAL (ENSRFEG00010020955) #24	TESMIN (ENSRFEG00010020904) #25	CPT1A (ENSRFEG00010020866) #26	MRPL21 (ENSRFEG00010020842) #27	IGHMBP2 (ENSRFEG00010020811) #28	ENSRFEG00010020788 #29	MRGPRF (ENSRFEG00010020778) #30	TPCN2 (ENSRFEG00010020715) #31	CCND1 (ENSRFEG00010020663) #35	LTO1 (ENSRFEG00010020618) #36	FGF19 (ENSRFEG00010020594)	FGF4 (ENSRFEG00010020567)	FGF3 (ENSRFEG00010020546)	ANO1 (ENSRFEG00010020393)
Megabat	MODERN SPECIES	1727																LRP5 (ENSPVAG00000001586) #22
Equus	ANCESTRAL SPECIES	11	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00940000163435.e.b	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b.d #29	ENSGT01030000234639.A.b.a.b.b.c #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Horse	MODERN SPECIES	3	CDK2AP2 (ENSECAG00000020079)	CABP2 (ENSECAG00000020097)	ENSECAG00000020462	NDUFV1 (ENSECAG00000021477) #8	ENSECAG00000054975	DOC2G (ENSECAG00000022087) #9	TBX10 (ENSECAG00000022406) #11	ALDH3B2 (ENSECAG00000000896) #13	UNC93B1 (ENSECAG00000007813) #16	ALDH3B1 (ENSECAG00000007907) ##13	NDUFS8 (ENSECAG00000010175) #18	TCIRG1 (ENSECAG00000010196) #19	CHKA (ENSECAG00000011539)	KMT5B (ENSECAG00000012952) #20	C12H11orf24 (ENSECAG00000028930) #21	LRP5 (ENSECAG00000013180) #22	PPP6R3 (ENSECAG00000015322) #23	GAL (ENSECAG00000016579) #24	CPT1A (ENSECAG00000016852) #26	MRPL21 (ENSECAG00000019258) #27	IGHMBP2 (ENSECAG00000019360) #28	ENSECAG00000035247 #29	ENSECAG00000019576 #29	MRGPRF (ENSECAG00000019588) #30	TPCN2 (ENSECAG00000019619) #31	CCND1 (ENSECAG00000038536) #35	LTO1 (ENSECAG00000020265) #36	FGF19 (ENSECAG00000036646)	FGF4 (ENSECAG00000031103)	FGF3 (ENSECAG00000031321)	ANO1 (ENSECAG00000020314)
Donkey	MODERN SPECIES	21	ENSEASG00005005960	ENSEASG00005026638	NDUFV1 (ENSEASG00005005962) #8	ENSEASG00005005966 #9	ENSEASG00005005969	TBX10 (ENSEASG00005005973) #11	ALDH3B2 (ENSEASG00005005982) #13	ENSEASG00005034466	UNC93B1 (ENSEASG00005005996) #16	ENSEASG00005005998 ##13	NDUFS8 (ENSEASG00005005999) #18	TCIRG1 (ENSEASG00005006001) #19	CHKA (ENSEASG00005006007)	KMT5B (ENSEASG00005006021) #20	ENSEASG00005036637 #21	LRP5 (ENSEASG00005006074) #22	PPP6R3 (ENSEASG00005006224) #23	GAL (ENSEASG00005007730) #24	TESMIN (ENSEASG00005007731) #25	CPT1A (ENSEASG00005007732) #26	ENSEASG00005007733 #27	ENSEASG00005032095 #29	ENSEASG00005007740 #29	IGHMBP2 (ENSEASG00005007735) #28	MRGPRF (ENSEASG00005007743) #30	TPCN2 (ENSEASG00005007747) #31	SMIM38 (ENSEASG00005030431) #32	ENSEASG00005029364	CCND1 (ENSEASG00005007754) #35	LTO1 (ENSEASG00005028684) #36	FGF19 (ENSEASG00005034459)
Atlantogenata	ANCESTRAL SPECIES	17	ENSGT00940000164125	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.e.b #13	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128
Xenarthra	ANCESTRAL SPECIES	543																ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31
Armadillo	MODERN SPECIES	4299																LRP5 (ENSDNOG00000009528) #22	PPP6R3 (ENSDNOG00000015259) #23	GAL (ENSDNOG00000009180) #24	TESMIN (ENSDNOG00000007327) #25	CPT1A (ENSDNOG00000007335) #26	ENSDNOG00000002330 #27	IGHMBP2 (ENSDNOG00000002334) #28	MRGPRF (ENSDNOG00000040402) #30	TPCN2 (ENSDNOG00000045779) #31
Afrotheria	ANCESTRAL SPECIES	9	ENSGT00940000161522	ENSGT00940000160334	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Afrotheria_a	ANCESTRAL SPECIES	9	ENSGT00940000161522	ENSGT00940000160334	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000163889 #10	ENSGT00940000154816.a.a #11	ENSGT00530000063359.B #16	ENSGT00940000155904.e.a ##13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825
Hyrax	MODERN SPECIES	4455																ENSPCAG00000007332 #22
Elephant	MODERN SPECIES	532	CDK2AP2 (ENSLAFG00000010947)	CABP2 (ENSLAFG00000000855)	GSTP1 (ENSLAFG00000022378) #7	NDUFV1 (ENSLAFG00000022729) #8	ENSLAFG00000030851 #9	NUDT8 (ENSLAFG00000015108) #10	TBX10 (ENSLAFG00000022296) #11	ENSLAFG00000031633 ##13	UNC93B1 (ENSLAFG00000009400) #16	ENSLAFG00000009402 ##13	NDUFS8 (ENSLAFG00000006283) #18	TCIRG1 (ENSLAFG00000009983) #19	CHKA (ENSLAFG00000009985)	KMT5B (ENSLAFG00000006490) #20	ENSLAFG00000006321 #21	LRP5 (ENSLAFG00000008300) #22	PPP6R3 (ENSLAFG00000008701) #23	ENSLAFG00000013266	TESMIN (ENSLAFG00000008438) #25	CPT1A (ENSLAFG00000018211) #26	MRPL21 (ENSLAFG00000003336) #27	ENSLAFG00000025815	IGHMBP2 (ENSLAFG00000022445) #28	MRGPRD (ENSLAFG00000010061) #29	MRGPRF (ENSLAFG00000007732) #30	ENSLAFG00000007978 #31	CCND1 (ENSLAFG00000007682) #35	LTO1 (ENSLAFG00000022073) #36	ENSLAFG00000029807	FGF4 (ENSLAFG00000025574)
Tenrec	MODERN SPECIES	292																ENSETEG00000001595 #22
Marsupialia	ANCESTRAL SPECIES	12	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00940000163374	ENSGT00390000001189.b #12	ENSGT00940000155904.d #13	ENSGT00530000063359.B #16	ENSGT00940000155904.c #13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Opossum	MODERN SPECIES	475																ENSMODG00000022701 #22
Marsupialia_b	ANCESTRAL SPECIES	15	ENSGT00940000159796	ENSGT00940000162460 #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.d #13	ENSGT00530000063359.B #16	ENSGT00940000155904.c #13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Diprotodontia	ANCESTRAL SPECIES	27	ENSGT00940000159796	ENSGT00940000162460.p #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.d #13	ENSGT00530000063359.B #16	ENSGT00940000155904.c #13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b.e	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Diprotodontia_a	ANCESTRAL SPECIES	15	ENSGT00940000159796	ENSGT00940000162460.p #7	ENSGT00390000010641 #8	ENSGT00940000162875 #9	ENSGT00940000162775	ENSGT00940000154816.a.a #11	ENSGT00390000001189.b #12	ENSGT00940000155904.d #13	ENSGT00530000063359.B #16	ENSGT00940000155904.c #13	ENSGT00390000003049 #18	ENSGT00950000182881.a.b.a.b #19	ENSGT00950000182939.a.b.b.e	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT01030000234639.A.b.a.b.b #29	ENSGT01030000234639.A.b.a.a #30	ENSGT00940000159763 #31	ENSGT00940000157816 #35	ENSGT00390000009426 #36	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182
Common wonbat	MODERN SPECIES	714	ENSVURG00010024689 #7	ENSVURG00010024685 #7	NDUFV1 (ENSVURG00010024680) #8	ENSVURG00010024674 #9	ENSVURG00010024670	TBX10 (ENSVURG00010024668) #11	ENSVURG00010024665 #12	ENSVURG00010024664 #13	UNC93B1 (ENSVURG00010024662) #16	ENSVURG00010024659 #13	NDUFS8 (ENSVURG00010024656) #18	TCIRG1 (ENSVURG00010024654) #19	CHKA (ENSVURG00010024636)	KMT5B (ENSVURG00010024629) #20	ENSVURG00010024627 #21	ENSVURG00010024625 #22	PPP6R3 (ENSVURG00010024623) #23	ENSVURG00010024620 #24	TESMIN (ENSVURG00010024616) #25	CPT1A (ENSVURG00010024607) #26	ENSVURG00010024596 #27	IGHMBP2 (ENSVURG00010024593) #28	ENSVURG00010024590 #29	MRGPRF (ENSVURG00010024588) #30	TPCN2 (ENSVURG00010024582) #31	CCND1 (ENSVURG00010024576) #35	LTO1 (ENSVURG00010024575) #36	FGF19 (ENSVURG00010024573)	FGF4 (ENSVURG00010024570)	FGF3 (ENSVURG00010024564)	ANO1 (ENSVURG00010024551)
koala	MODERN SPECIES	179	CABP2 (ENSPCIG00000022020)	GSTP1 (ENSPCIG00000022022) #7	NDUFV1 (ENSPCIG00000022025) #8	ENSPCIG00000022032 #9	ENSPCIG00000033935	TBX10 (ENSPCIG00000009222) #11	ENSPCIG00000009223 #12	ENSPCIG00000009224 #13	UNC93B1 (ENSPCIG00000036094) #16	ENSPCIG00000022863 #13	NDUFS8 (ENSPCIG00000022867) #18	TCIRG1 (ENSPCIG00000022871) #19	ENSPCIG00000037053	ENSPCIG00000020821 #20	ENSPCIG00000013019 #21	LRP5 (ENSPCIG00000005308) #22	PPP6R3 (ENSPCIG00000011038) #23	ENSPCIG00000011055 #24	TESMIN (ENSPCIG00000011057) #25	ENSPCIG00000014807 #26
Wallaby	MODERN SPECIES	6595																LRP5 (ENSMEUG00000009557) #22
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000029978	CABP2 (ENSSHAG00000001734)	ENSSHAG00000005628 #8	ENSSHAG00000005499 #9	ENSSHAG00000005329	TBX10 (ENSSHAG00000005122) #11	ENSSHAG00000004624 #12	ENSSHAG00000024605 #13	ENSSHAG00000002419 #16	ENSSHAG00000021272 #13	NDUFS8 (ENSSHAG00000008291) #18	TCIRG1 (ENSSHAG00000008168) #19	CHKA (ENSSHAG00000007882)	KMT5B (ENSSHAG00000007069) #20	ENSSHAG00000031576 #21	LRP5 (ENSSHAG00000004102) #22	PPP6R3 (ENSSHAG00000029610) #23	GAL (ENSSHAG00000005648) #24	TESMIN (ENSSHAG00000004539) #25	CPT1A (ENSSHAG00000003410) #26	ENSSHAG00000027996 #27	IGHMBP2 (ENSSHAG00000001585) #28	ENSSHAG00000000304 #29	MRGPRF (ENSSHAG00000031299) #30	ENSSHAG00000001669 ##30	ENSSHAG00000032129 ##30	ENSSHAG00000029471 ##30	ENSSHAG00000000514 ##30	ENSSHAG00000000834 ##30	ENSSHAG00000002638 ##30	TPCN2 (ENSSHAG00000004691) #31
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164715	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000162785	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164715	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515	ENSGT01050000244857.A.a.b
Archosauria	ANCESTRAL SPECIES	44	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000162785	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164715	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515	ENSGT01050000244857.A.a.b
Aves	ANCESTRAL SPECIES	2	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000160931	ENSGT00940000163916	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26
Neognathae	ANCESTRAL SPECIES	4	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000160931	ENSGT00940000164030	ENSGT00940000161019	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00950000182990.a.a.b.a.b.b.a.a	ENSGT00950000182990.a.a.b.a.b.b.a.b.b	ENSGT00950000182990.a.a.b.a.a	ENSGT00950000182990.a.a.a.b	ENSGT00940000159102	ENSGT00940000158650	ENSGT00950000182841.b.a.a.b.b	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890	ENSGT00940000156393
Anatidae	ANCESTRAL SPECIES	9	ENSGT00950000183139.B	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00940000161238	ENSGT00940000161492	ENSGT00960000188372	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000156289	ENSGT00940000163235.E	ENSGT00940000162219	ENSGT00940000156076.a.a.b.c	ENSGT00940000156076.a.b	ENSGT00940000156076.a.a.b.d	ENSGT00390000013104	ENSGT00940000157462.C	ENSGT01050000244956.a.a	ENSGT00940000160004	ENSGT00950000182857.a.a.a ##34	ENSGT00940000155733.a.a	ENSGT00390000017767.a	ENSGT00940000160892	ENSGT00960000188439
Pink-footed goose	MODERN SPECIES	23	RALGAPA1 (ENSABRG00000013207)	ENSABRG00000015676	PSMA6 (ENSABRG00000015685)	PRORP (ENSABRG00000015693)	PPP2R3C (ENSABRG00000015698)	FAM177A1 (ENSABRG00000015704)	SRP54 (ENSABRG00000015711)	ENSABRG00000015727	BAZ1A (ENSABRG00000015739)	ENSABRG00000015783	RNH1 (ENSABRG00000015791)	ENSABRG00000015799	CHKA (ENSABRG00000015804)	KMT5B (ENSABRG00000015818) #20	ENSABRG00000015822 #21	LRP5 (ENSABRG00000015826) #22	MUC2 (ENSABRG00000015841)
Duck	MODERN SPECIES	23	PSMA6 (ENSAPLG00000010919)	PRORP (ENSAPLG00000010757)	PPP2R3C (ENSAPLG00000010576)	FAM177A1 (ENSAPLG00000023381)	SRP54 (ENSAPLG00000010125)	ENSAPLG00000010109	BAZ1A (ENSAPLG00000009786)	ENSAPLG00000009553	ENSAPLG00000028523	RNH1 (ENSAPLG00000009242)	ENSAPLG00000009233	CHKA (ENSAPLG00000008912)	KMT5B (ENSAPLG00000008701) #20	ENSAPLG00000018742	ENSAPLG00000029570 #21	ENSAPLG00000008203 #22	MUC2 (ENSAPLG00000008123)	ENSAPLG00000010361	ENSAPLG00000010845	ENSAPLG00000011334	ENSAPLG00000008356	ENSAPLG00000028747	ENSAPLG00000017272	TOLLIP (ENSAPLG00000020119)	BRSK2 (ENSAPLG00000009397)	ENSAPLG00000026451	MOB2 (ENSAPLG00000018671)	DUSP8 (ENSAPLG00000009896)	IFITM10 (ENSAPLG00000026899) ##34	CTSD (ENSAPLG00000009985)	ENSAPLG00000011102
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000160931	ENSGT00940000164030	ENSGT00940000161019	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b.s	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a.b #26	ENSGT00950000182990.a.a.b.a.b.b.a.a	ENSGT00950000182990.a.a.b.a.b.b.a.b.b	ENSGT00950000182990.a.a.b.a.a	ENSGT00950000182990.a.a.a.b	ENSGT00940000159102	ENSGT00940000158650	ENSGT00950000182841.b.a.a.b.b	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890	ENSGT00940000156393
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000160931	ENSGT00940000161019	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b.s	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a.b #26	ENSGT00950000182990.a.a.b.a.b.b.a.a	ENSGT00950000182990.a.a.b.a.b.b.a.b.b	ENSGT00950000182990.a.a.b.a.a	ENSGT00950000182990.a.a.a.b	ENSGT00940000159102	ENSGT00940000158650	ENSGT00950000182841.b.a.a.b.b	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890	ENSGT00940000156393
Turkey	MODERN SPECIES	25	PIDD1 (ENSMGAG00000009084)	SLC25A22 (ENSMGAG00000009101)	ENSMGAG00000020846	IRF7 (ENSMGAG00000009104)	ENSMGAG00000009124	ENSMGAG00000009127	RASSF7 (ENSMGAG00000009231)	LRRC56 (ENSMGAG00000009254)	ENSMGAG00000009152	ENSMGAG00000009157	RNH1 (ENSMGAG00000009167)	ENSMGAG00000021825	ENSMGAG00000009192	ENSMGAG00000009202 #20	ENSMGAG00000017401 #21	LRP5 (ENSMGAG00000009268) #22	PPP6R3 (ENSMGAG00000009324) #23	GAL (ENSMGAG00000009367) #24	TESMIN (ENSMGAG00000009374) #25	ENSMGAG00000009377 #26	ENSMGAG00000009437	ENSMGAG00000019769	ENSMGAG00000009449	ENSMGAG00000009519	RAB3IL1 (ENSMGAG00000009595)	ENSMGAG00000009495	ENSMGAG00000009502	ENSMGAG00000009769	ENSMGAG00000018183	MPEG1 (ENSMGAG00000015790)	DTX4 (ENSMGAG00000009754)
Chicken	MODERN SPECIES	34	RPLP2 (ENSGALG00010023115)	PIDD1 (ENSGALG00010023118)	SLC25A22 (ENSGALG00010022990)	IRF7 (ENSGALG00010023005)	ENSGALG00010023012	ENSGALG00010023026	RASSF7 (ENSGALG00010025580)	LRRC56 (ENSGALG00010025587)	HRAS (ENSGALG00010025590)	ENSGALG00010025600	RNH1 (ENSGALG00010025610)	ENSGALG00010025620	CHKA (ENSGALG00010025635)	KMT5B (ENSGALG00010025652) #20	C11orf24 (ENSGALG00010025737) #21	LRP5 (ENSGALG00010025790) #22	PPP6R3 (ENSGALG00010025835) #23	GAL (ENSGALG00010025881) #24	TESMIN (ENSGALG00010025889) #25	CPT1A (ENSGALG00010025905) #26	ENSGALG00010025914	ENSGALG00010025937	ENSGALG00010025957	FADS2 (ENSGALG00010025968)	RAB3IL1 (ENSGALG00010025986)	BEST1 (ENSGALG00010025995)	FTH1 (ENSGALG00010026002)	ENSGALG00010026004	ENSGALG00010026019	ENSGALG00010026037	ENSGALG00010026043
Japanese quail	MODERN SPECIES	23	CRACR2B (ENSCJPG00005018485)	PNPLA2 (ENSCJPG00005018484)	RPLP2 (ENSCJPG00005018482)	PIDD1 (ENSCJPG00005018481)	SLC25A22 (ENSCJPG00005018480)	IRF7 (ENSCJPG00005018479)	ENSCJPG00005018478	ENSCJPG00005018477	RASSF7 (ENSCJPG00005018475)	HRAS (ENSCJPG00005018473)	ENSCJPG00005018470	RNH1 (ENSCJPG00005018469)	CHKA (ENSCJPG00005018468)	KMT5B (ENSCJPG00005018467) #20	ENSCJPG00005018466 #21	LRP5 (ENSCJPG00005018446) #22	PPP6R3 (ENSCJPG00005018445) #23	GAL (ENSCJPG00005018444) #24	CPT1A (ENSCJPG00005018027) #26	ENSCJPG00005018026	ENSCJPG00005018025	ENSCJPG00005017827	ENSCJPG00005017814	RAB3IL1 (ENSCJPG00005017813)	BEST1 (ENSCJPG00005017812)	ENSCJPG00005017811	ENSCJPG00005017810	MPEG1 (ENSCJPG00005017809)	DTX4 (ENSCJPG00005017808)	CNTF (ENSCJPG00005017807)	ZFP91 (ENSCJPG00005017806)
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT01060000248595.b.a.b.a #26
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT01060000248595.b.a.b.a #26
Golden eagle	MODERN SPECIES	7	ENSACCG00020010481	RPLP2 (ENSACCG00020010442)	PIDD1 (ENSACCG00020010425)	SLC25A22 (ENSACCG00020010409)	IRF7 (ENSACCG00020010394)	ENSACCG00020010384	ENSACCG00020010361	RASSF7 (ENSACCG00020010335)	LRRC56 (ENSACCG00020010309)	HRAS (ENSACCG00020010287)	ENSACCG00020010265	RNH1 (ENSACCG00020010244)	CHKA (ENSACCG00020010220)	KMT5B (ENSACCG00020010199) #20	ENSACCG00020010186 #21	LRP5 (ENSACCG00020010174) #22	PPP6R3 (ENSACCG00020010116) #23	GAL (ENSACCG00020010062) #24	CPT1A (ENSACCG00020010046) #26	RLF (ENSACCG00020010025)	ZMPSTE24 (ENSACCG00020010004)	KDM1A (ENSACCG00020009958)	LUZP1 (ENSACCG00020009928)	HTR1D (ENSACCG00020009921)	HNRNPR (ENSACCG00020009901)	ENSACCG00020009880	DNAJC8 (ENSACCG00020009867)	PTAFR (ENSACCG00020009857)	EYA3 (ENSACCG00020009827)	XKR8 (ENSACCG00020009794)	ENSACCG00020009781
Kakapo	MODERN SPECIES	21	SPON1 (ENSSHBG00005010434)	SYT9 (ENSSHBG00005010399)	OLFML1 (ENSSHBG00005010210)	TRAF6 (ENSSHBG00005010177)	COMMD9 (ENSSHBG00005000484)	LDLRAD3 (ENSSHBG00005000479)	PRR5L (ENSSHBG00005000473)	FJX1 (ENSSHBG00005000469)	PAMR1 (ENSSHBG00005019263)	SLC1A2 (ENSSHBG00005019261)	ENSSHBG00005019258	PDHX (ENSSHBG00005019256)	APIP (ENSSHBG00005019255)	EHF (ENSSHBG00005019250)	ENSSHBG00005019246	LRP5 (ENSSHBG00005018446) #22	PPP6R3 (ENSSHBG00005018403) #23	GAL (ENSSHBG00005018399) #24	CPT1A (ENSSHBG00005018397) #26	PPFIBP2 (ENSSHBG00005017045)	CYB5R2 (ENSSHBG00005016931)	ENSSHBG00005016922	OVCH2 (ENSSHBG00005016900)	FAR1 (ENSSHBG00005016880)	ENSSHBG00005016876	PTH (ENSSHBG00005016870)	BTBD10 (ENSSHBG00005016861)	BMAL1 (ENSSHBG00005016845)	RASSF10 (ENSSHBG00005016835)	TEAD1 (ENSSHBG00005016830)	PARVA (ENSSHBG00005016821)
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000160980	ENSGT00940000159310	ENSGT00390000001680	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379	ENSGT00940000154234.a	ENSGT00390000016768	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000160980	ENSGT00940000159310	ENSGT00390000001680	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379	ENSGT00940000154234.a	ENSGT00960000189471	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00550000074828.a	ENSGT00940000161780.c	ENSGT00940000161196	ENSGT00940000160931	ENSGT00940000161427	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000159310	ENSGT00390000001680	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379	ENSGT00940000154234.a	ENSGT00960000189471	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679
Medium ground finch	MODERN SPECIES	15	RPLP2 (ENSGFOG00000007547)	ENSGFOG00000007540	ENSGFOG00000007532	ENSGFOG00000007511	SLC25A22 (ENSGFOG00000007021)	ENSGFOG00000006961	ENSGFOG00000006946	RASSF7 (ENSGFOG00000006932)	LRRC56 (ENSGFOG00000006917)	HRAS (ENSGFOG00000006911)	ENSGFOG00000006898	RNH1 (ENSGFOG00000006888)	CHKA (ENSGFOG00000006832)	KMT5B (ENSGFOG00000006819) #20	ENSGFOG00000006815 #21	LRP5 (ENSGFOG00000006798) #22	PPP6R3 (ENSGFOG00000006764) #23	GAL (ENSGFOG00000006756) #24	CPT1A (ENSGFOG00000006742) #26	EHF (ENSGFOG00000006738)	APIP (ENSGFOG00000006731)	PDHX (ENSGFOG00000006697)	CD44 (ENSGFOG00000006680)	SLC1A2 (ENSGFOG00000006659)	PAMR1 (ENSGFOG00000006647)	ENSGFOG00000006638	LDLRAD3 (ENSGFOG00000006635)	COMMD9 (ENSGFOG00000006633)	PRR5L (ENSGFOG00000006629)	TRAF6 (ENSGFOG00000006624)	RAG1 (ENSGFOG00000006622)
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780.c	ENSGT00940000161196	ENSGT00940000160931	ENSGT00940000161427	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000159310	ENSGT00390000001680	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379	ENSGT00940000154234.a	ENSGT00940000160574	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00940000155426	ENSGT00390000008679	ENSGT00390000012559
Zebra finch	MODERN SPECIES	27	CRACR2B (ENSTGUG00000009781)	PNPLA2 (ENSTGUG00000009785)	RPLP2 (ENSTGUG00000009801)	PIDD1 (ENSTGUG00000009817)	SLC25A22 (ENSTGUG00000009826)	IRF7 (ENSTGUG00000024451)	ENSTGUG00000009843	ENSTGUG00000009846	RASSF7 (ENSTGUG00000009857)	HRAS (ENSTGUG00000009877)	ENSTGUG00000009885	RNH1 (ENSTGUG00000009896)	CHKA (ENSTGUG00000009915)	KMT5B (ENSTGUG00000009927) #20	ENSTGUG00000020320 #21	LRP5 (ENSTGUG00000009934) #22	PPP6R3 (ENSTGUG00000009971) #23	GAL (ENSTGUG00000009968) #24	CPT1A (ENSTGUG00000009993) #26	EHF (ENSTGUG00000010040)	APIP (ENSTGUG00000026500)	PDHX (ENSTGUG00000010068)	CD44 (ENSTGUG00000010085)	SLC1A2 (ENSTGUG00000021059)	PAMR1 (ENSTGUG00000010108)	ENSTGUG00000010115	LDLRAD3 (ENSTGUG00000010116)	COMMD9 (ENSTGUG00000010117)	PRR5L (ENSTGUG00000010127)	TRAF6 (ENSTGUG00000023943)	ENSTGUG00000019722
Common canary	MODERN SPECIES	3	DUSP8 (ENSSCAG00000004426)	MOB2 (ENSSCAG00000004418)	ENSSCAG00000004413	ENSSCAG00000004391	TOLLIP (ENSSCAG00000004372)	ENSSCAG00000004359	ENSSCAG00000004355	ENSSCAG00000004334	ENSSCAG00000004307	MUC2 (ENSSCAG00000004268)	MUC6 (ENSSCAG00000004242)	AP2A2 (ENSSCAG00000004230)	CHID1 (ENSSCAG00000004218)	TSPAN4 (ENSSCAG00000004202)	ENSSCAG00000004197 #21	LRP5 (ENSSCAG00000003838) #22	PPP6R3 (ENSSCAG00000003754) #23	GAL (ENSSCAG00000003743) #24	CPT1A (ENSSCAG00000003737) #26	EHF (ENSSCAG00000003728)	APIP (ENSSCAG00000003723)	PDHX (ENSSCAG00000003711)	ENSSCAG00000003691	ENSSCAG00000003684	SLC1A2 (ENSSCAG00000003675)	PAMR1 (ENSSCAG00000003670)	LDLRAD3 (ENSSCAG00000003644)	COMMD9 (ENSSCAG00000003638)	PRR5L (ENSSCAG00000003631)	TRAF6 (ENSSCAG00000003629)	RAG1 (ENSSCAG00000003627)
Flycatcher	MODERN SPECIES	24	PNPLA2 (ENSFALG00000010479)	RPLP2 (ENSFALG00000010475)	PIDD1 (ENSFALG00000010472)	SLC25A22 (ENSFALG00000010469)	IRF7 (ENSFALG00000012069)	ENSFALG00000027629	ENSFALG00000012104	RASSF7 (ENSFALG00000012119)	LRRC56 (ENSFALG00000012137)	HRAS (ENSFALG00000012145)	ENSFALG00000012154	RNH1 (ENSFALG00000012757)	ENSFALG00000012732	ENSFALG00000027659 #20	ENSFALG00000027419 #21	LRP5 (ENSFALG00000012674) #22	ENSFALG00000026022	PPP6R3 (ENSFALG00000012628) #23	GAL (ENSFALG00000012599) #24	CPT1A (ENSFALG00000012570) #26	ENSFALG00000014378	EHF (ENSFALG00000025387)	APIP (ENSFALG00000026708)	PDHX (ENSFALG00000012525)	CD44 (ENSFALG00000027438)	SLC1A2 (ENSFALG00000012468)	PAMR1 (ENSFALG00000012457)	LDLRAD3 (ENSFALG00000025257)	PRR5L (ENSFALG00000012439)	TRAF6 (ENSFALG00000012435)	RAG1 (ENSFALG00000014372)
Great tit	MODERN SPECIES	25	PNPLA2 (ENSPMJG00000009762)	ENSPMJG00000009766	RPLP2 (ENSPMJG00000009767)	PIDD1 (ENSPMJG00000009769)	SLC25A22 (ENSPMJG00000009808)	IRF7 (ENSPMJG00000009810)	ENSPMJG00000009811	RASSF7 (ENSPMJG00000009815)	LRRC56 (ENSPMJG00000009818)	HRAS (ENSPMJG00000009820)	ENSPMJG00000009838	RNH1 (ENSPMJG00000009858)	CHKA (ENSPMJG00000009865)	KMT5B (ENSPMJG00000009869) #20	ENSPMJG00000009902 #21	LRP5 (ENSPMJG00000009906) #22	PPP6R3 (ENSPMJG00000009913) #23	GAL (ENSPMJG00000009933) #24	CPT1A (ENSPMJG00000009938) #26	EHF (ENSPMJG00000009945)	APIP (ENSPMJG00000009947)	PDHX (ENSPMJG00000009950)	CD44 (ENSPMJG00000009954)	SLC1A2 (ENSPMJG00000009957)	PAMR1 (ENSPMJG00000009996)	FJX1 (ENSPMJG00000009999)	LDLRAD3 (ENSPMJG00000010000)	PRR5L (ENSPMJG00000010019)	COMMD9 (ENSPMJG00000010021)	TRAF6 (ENSPMJG00000010023)	RAG1 (ENSPMJG00000010025)
Australian saltwater crocodile	MODERN SPECIES	55	ENSCPRG00005010132	IRF7 (ENSCPRG00005010123)	ENSCPRG00005010113	ENSCPRG00005010105	RASSF7 (ENSCPRG00005010092)	ENSCPRG00005010077	LRRC56 (ENSCPRG00005010068)	HRAS (ENSCPRG00005010057)	ENSCPRG00005010034	RNH1 (ENSCPRG00005010012)	ENSCPRG00005010011	ENSCPRG00005010009	CHKA (ENSCPRG00005009999)	KMT5B (ENSCPRG00005009982) #20	ENSCPRG00005009975 #21	LRP5 (ENSCPRG00005009611) #22	PPP6R3 (ENSCPRG00005009502) #23	ENSCPRG00005009491	GAL (ENSCPRG00005009484) #24	CPT1A (ENSCPRG00005009464) #26	ENSCPRG00005009457	MRPL21 (ENSCPRG00005009450) #27	IGHMBP2 (ENSCPRG00005009441) #28	SYT12 (ENSCPRG00005009433)	PTDSS2 (ENSCPRG00005009359)	SIGIRR (ENSCPRG00005009321)	PKP3 (ENSCPRG00005009309)	B4GALNT4 (ENSCPRG00005009299)	ENSCPRG00005009287 #34	ENSCPRG00005009281 #34	ENSCPRG00005009278 #34
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000162785	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164715	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515	ENSGT01050000244857.A.a.b
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d.a #23	ENSGT00940000162785	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164949	ENSGT00390000005535.b #27	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515	ENSGT01050000244857.A.a.b	ENSGT00950000182857.a.a.b.a #34
Emydidae	ANCESTRAL SPECIES	79	ENSGT00530000069101	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00960000188372	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d.a #23
painted turtle	MODERN SPECIES	832													CHKA (ENSCPBG00000010234)	KMT5B (ENSCPBG00000010226) #20	ENSCPBG00000010220 #21	LRP5 (ENSCPBG00000010212) #22	ENSCPBG00000007338 #23	ENSCPBG00000007256	ENSCPBG00000007252	ENSCPBG00000007209 #24	PNPLA2 (ENSCPBG00000007182)	ENSCPBG00000007146	ENSCPBG00000007128	CD151 (ENSCPBG00000007117)	POLR2L (ENSCPBG00000007106)	TSPAN4 (ENSCPBG00000007092)	CHID1 (ENSCPBG00000007075)
Three-toed box turtle	MODERN SPECIES	120																LRP5 (ENSTMTG00000006989) #22	PPP6R3 (ENSTMTG00000006757) #23	ENSTMTG00000006723 #21	KMT5B (ENSTMTG00000006705) #20	CHKA (ENSTMTG00000006685)	ENSTMTG00000006668	RNH1 (ENSTMTG00000006643)	ENSTMTG00000006629	HRAS (ENSTMTG00000006617)	ENSTMTG00000006601	RASSF7 (ENSTMTG00000006546)	ENSTMTG00000006493	IRF7 (ENSTMTG00000006417)	ENSTMTG00000006398	DRD4 (ENSTMTG00000006381)	DEAF1 (ENSTMTG00000006350)
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00390000008992.k	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d.a #23	ENSGT00940000162785	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164949	ENSGT00390000005535.b #27	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515	ENSGT01050000244857.A.a.b	ENSGT00950000182857.a.a.b.a #34
Abingdon island giant tortoise	MODERN SPECIES	2186										ENSCABG00000014942	ENSCABG00000014941	CHKA (ENSCABG00000014935)	SSR4 (ENSCABG00000014934)	KMT5B (ENSCABG00000014933) #20	ENSCABG00000014932 #21	LRP5 (ENSCABG00000014927) #22	PPP6R3 (ENSCABG00000014923) #23	ENSCABG00000014922	GAL (ENSCABG00000014919) #24	ENSCABG00000014918 #25
Chinese turtle	MODERN SPECIES	1728															ENSPSIG00000008500 #21	LRP5 (ENSPSIG00000009224) #22	PPP6R3 (ENSPSIG00000010941) #23	GAL (ENSPSIG00000012847) #24	CPT1A (ENSPSIG00000013100) #26	ENSPSIG00000014748	ENSPSIG00000014896	MRPL21 (ENSPSIG00000015523) #27	IGHMBP2 (ENSPSIG00000015808) #28	SYT12 (ENSPSIG00000016178)	PTDSS2 (ENSPSIG00000016607)	ENSPSIG00000000730	ANO9 (ENSPSIG00000006203)	SIGIRR (ENSPSIG00000007329)	PKP3 (ENSPSIG00000007561)	B4GALNT4 (ENSPSIG00000008630)	ENSPSIG00000009554 #34
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164715	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515
Episquamata	ANCESTRAL SPECIES		ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164715	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000162785	ENSGT00390000009663 #24	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164715	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515	ENSGT01050000244857.A.a.b	ENSGT00950000182857.a.a.b.a #34
Common wall lizard	MODERN SPECIES		IRF7 (ENSPMRG00000000142)	ENSPMRG00000000168	ENSPMRG00000000198	RASSF7 (ENSPMRG00000000246)	ENSPMRG00000000274	LRRC56 (ENSPMRG00000000367)	ENSPMRG00000000399	HRAS (ENSPMRG00000000408)	ENSPMRG00000000426	ENSPMRG00000000451	RNH1 (ENSPMRG00000000473)	CHKA (ENSPMRG00000000493)	KMT5B (ENSPMRG00000000510) #20	ENSPMRG00000000525 #21	ENSPMRG00000000535	LRP5 (ENSPMRG00000000550) #22	PPP6R3 (ENSPMRG00000000609) #23	ENSPMRG00000000663	GAL (ENSPMRG00000000691) #24	CPT1A (ENSPMRG00000000718) #26	ENSPMRG00000000752	ENSPMRG00000000763	MRPL21 (ENSPMRG00000000786) #27	ENSPMRG00000000825	IGHMBP2 (ENSPMRG00000000836) #28	SYT12 (ENSPMRG00000000874)	ENSPMRG00000000889	PTDSS2 (ENSPMRG00000000903)	ANO9 (ENSPMRG00000000932)	SIGIRR (ENSPMRG00000000983)	PKP3 (ENSPMRG00000001006)
Argentine black and white tegu	MODERN SPECIES	3	EPS8L2 (ENSSMRG00000013529)	TMEM80 (ENSSMRG00000013523)	DEAF1 (ENSSMRG00000013522)	DRD4 (ENSSMRG00000013521)	IRF7 (ENSSMRG00000013520)	ENSSMRG00000013519	RASSF7 (ENSSMRG00000013517)	LRRC56 (ENSSMRG00000013516)	HRAS (ENSSMRG00000013514)	ENSSMRG00000013513	ENSSMRG00000013512	RNH1 (ENSSMRG00000013511)	CHKA (ENSSMRG00000013509)	KMT5B (ENSSMRG00000013508) #20	ENSSMRG00000013507 #21	LRP5 (ENSSMRG00000013506) #22	PPP6R3 (ENSSMRG00000013505) #23	ENSSMRG00000013502	GAL (ENSSMRG00000013497) #24	CPT1A (ENSSMRG00000013495) #26	ENSSMRG00000013494	ENSSMRG00000013493	MRPL21 (ENSSMRG00000013492) #27	IGHMBP2 (ENSSMRG00000013491) #28	SYT12 (ENSSMRG00000013490)	PTDSS2 (ENSSMRG00000013488)	ANO9 (ENSSMRG00000013485)	SIGIRR (ENSSMRG00000013483)	PKP3 (ENSSMRG00000013481)	B4GALNT4 (ENSSMRG00000013476)	ENSSMRG00000013474
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000161379 #25	ENSGT01060000248595.b.a.b.a #26	ENSGT00940000164715	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000162785	ENSGT00390000009663 #24	ENSGT01060000248595.b.a.b.a.c #26	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515	ENSGT01050000244857.A.a.b	ENSGT00950000182857.a.a.b.a.p #34
Indian cobra	MODERN SPECIES		ENSNNAG00000003245	TALDO1 (ENSNNAG00000003220)	EPS8L2 (ENSNNAG00000003183)	TMEM80 (ENSNNAG00000003170)	DEAF1 (ENSNNAG00000003147)	DRD4 (ENSNNAG00000003083)	ENSNNAG00000003047	ENSNNAG00000003012	RASSF7 (ENSNNAG00000002990)	LRRC56 (ENSNNAG00000002981)	HRAS (ENSNNAG00000002977)	ENSNNAG00000002967	RNH1 (ENSNNAG00000002957)	CHKA (ENSNNAG00000002936)	KMT5B (ENSNNAG00000002927) #20	LRP5 (ENSNNAG00000002912) #22	PPP6R3 (ENSNNAG00000002659) #23	ENSNNAG00000002598	GAL (ENSNNAG00000002587) #24	CPT1A (ENSNNAG00000002562) #26	ENSNNAG00000002543	MRPL21 (ENSNNAG00000002531) #27	IGHMBP2 (ENSNNAG00000002507) #28	SYT12 (ENSNNAG00000002490)	PTDSS2 (ENSNNAG00000002471)	ENSNNAG00000002456	SIGIRR (ENSNNAG00000002443)	PKP3 (ENSNNAG00000002431)	B4GALNT4 (ENSNNAG00000002368)	ENSNNAG00000002343 #34	ENSNNAG00000002335 ##34
Elapidae_a	ANCESTRAL SPECIES	29	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00990000210563	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000162785	ENSGT00390000009663 #24	ENSGT01060000248595.b.a.b.a.c #26	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515	ENSGT01050000244857.A.a.b	ENSGT00950000182857.a.a.b.a.p #34
Acanthophiinae	ANCESTRAL SPECIES	29	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00990000210563	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000162785	ENSGT00390000009663 #24	ENSGT01060000248595.b.a.b.a.c #26	ENSGT00940000164949	ENSGT00390000005535 #27	ENSGT00940000170720	ENSGT00930000151035.a #28	ENSGT00940000158627	ENSGT00530000063576.A	ENSGT00940000158300	ENSGT01090000259985.b.b.b.b	ENSGT00940000159515	ENSGT01050000244857.A.a.b	ENSGT00950000182857.a.a.b.a.p #34
Mainland tiger snake	MODERN SPECIES	22	DEAF1 (ENSNSUG00000016426)	DRD4 (ENSNSUG00000016421)	ENSNSUG00000016420	IRF7 (ENSNSUG00000016419)	ENSNSUG00000016417	ENSNSUG00000016416	ENSNSUG00000016415	RASSF7 (ENSNSUG00000016413)	HRAS (ENSNSUG00000016412)	ENSNSUG00000016411	ENSNSUG00000016410	RNH1 (ENSNSUG00000016409)	CHKA (ENSNSUG00000016408)	KMT5B (ENSNSUG00000016407) #20	ENSNSUG00000016406 #21	LRP5 (ENSNSUG00000016398) #22	PPP6R3 (ENSNSUG00000016396) #23	ENSNSUG00000016395	GAL (ENSNSUG00000016394) #24	CPT1A (ENSNSUG00000016040) #26	ENSNSUG00000016026	ENSNSUG00000016025	MRPL21 (ENSNSUG00000016023) #27	ENSNSUG00000016022	IGHMBP2 (ENSNSUG00000016019) #28	SYT12 (ENSNSUG00000016018)	PTDSS2 (ENSNSUG00000016015)	ANO9 (ENSNSUG00000016012)	SIGIRR (ENSNSUG00000016010)	PKP3 (ENSNSUG00000016009)	B4GALNT4 (ENSNSUG00000016005)
Eastern brown snake	MODERN SPECIES	32	DEAF1 (ENSPTXG00000000318)	DRD4 (ENSPTXG00000000853)	ENSPTXG00000001418	ENSPTXG00000001420	ENSPTXG00000001422	ENSPTXG00000001424	ENSPTXG00000001426	RASSF7 (ENSPTXG00000001430)	LRRC56 (ENSPTXG00000001433)	HRAS (ENSPTXG00000001435)	ENSPTXG00000001438	RNH1 (ENSPTXG00000001439)	CHKA (ENSPTXG00000001441)	KMT5B (ENSPTXG00000001443) #20	ENSPTXG00000001445 #21	LRP5 (ENSPTXG00000001447) #22	PPP6R3 (ENSPTXG00000001452) #23	ENSPTXG00000001461	GAL (ENSPTXG00000001466) #24	CPT1A (ENSPTXG00000001510) #26	ENSPTXG00000001817	MRPL21 (ENSPTXG00000001819) #27	IGHMBP2 (ENSPTXG00000001821) #28	SYT12 (ENSPTXG00000001825)	PTDSS2 (ENSPTXG00000001827)	ANO9 (ENSPTXG00000001832)	SIGIRR (ENSPTXG00000001835)	PKP3 (ENSPTXG00000001836)	B4GALNT4 (ENSPTXG00000001838)	ENSPTXG00000001841 #34	ENSPTXG00000001843 ##34
Blue-lipped sea krait	MODERN SPECIES	8503																LRP5 (ENSLLTG00000011688) #22
Lizard	MODERN SPECIES		ENSACAG00000015070	IRF7 (ENSACAG00000015053)	ENSACAG00000015010	RASSF7 (ENSACAG00000014995)	ENSACAG00000038000	ENSACAG00000041462	LRRC56 (ENSACAG00000014957)	HRAS (ENSACAG00000014920)	ENSACAG00000014892	RNH1 (ENSACAG00000014816)	ENSACAG00000028750	ENSACAG00000014764	ENSACAG00000014727 #20	ENSACAG00000043673	ENSACAG00000022152 #21	LRP5 (ENSACAG00000014411) #22	PPP6R3 (ENSACAG00000014254) #23	ENSACAG00000014191	GAL (ENSACAG00000014189) #24	TESMIN (ENSACAG00000025088) #25	CPT1A (ENSACAG00000013801) #26	ENSACAG00000029168	ENSACAG00000013784	MRPL21 (ENSACAG00000040333) #27	ENSACAG00000036860	IGHMBP2 (ENSACAG00000013702) #28	ENSACAG00000039820	ENSACAG00000013607	PTDSS2 (ENSACAG00000013572)	ANO9 (ENSACAG00000013532)	SIGIRR (ENSACAG00000013492)
tuatara	MODERN SPECIES	1653		TMEM80 (ENSSPUG00000005693)	DEAF1 (ENSSPUG00000005454)	DRD4 (ENSSPUG00000005389)	ENSSPUG00000005372	ENSSPUG00000005338	ENSSPUG00000005299	ENSSPUG00000005282	RASSF7 (ENSSPUG00000005256)	HRAS (ENSSPUG00000005243)	ENSSPUG00000005210	RNH1 (ENSSPUG00000005178)	CHKA (ENSSPUG00000005156)	KMT5B (ENSSPUG00000005140) #20	ENSSPUG00000005127 #21	LRP5 (ENSSPUG00000005087) #22	ENSSPUG00000005059 #23	ENSSPUG00000005033 #23	GAL (ENSSPUG00000005017) #24
Anura	ANCESTRAL SPECIES	169													ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009663.g #24	ENSGT00510000049875	ENSGT00390000002615	ENSGT00390000008374	ENSGT00940000159139	ENSGT00940000156954	ENSGT00940000159921	ENSGT00940000159589	ENSGT01030000234573.B.c.b.b	ENSGT00940000154348.c.a.b.a	ENSGT00940000159914	ENSGT00390000007552	ENSGT00940000154902	ENSGT00940000156646	ENSGT00390000015119
Frog	MODERN SPECIES	4	ovol1 (ENSXETG00000048074)	cfl1 (ENSXETG00000026161)	mus81 (ENSXETG00000020588)	efemp2 (ENSXETG00000020597)	fibp (ENSXETG00000020596)	ccdc85b (ENSXETG00000048532)	fosl1 (ENSXETG00000020606)	tmed10l (ENSXETG00000020604)	ENSXETG00000036397	ctsw (ENSXETG00000026153)	pgghg (ENSXETG00000020609)	usp6nl2 (ENSXETG00000020613)	chka (ENSXETG00000010020)	kmt5b (ENSXETG00000010025) #20	c11orf24 (ENSXETG00000038757) #21	lrp5 (ENSXETG00000010024) #22	ENSXETG00000044443 #24	ENSXETG00000047457	ubxn1 (ENSXETG00000005477)	lbhd1 (ENSXETG00000047364)	ENSXETG00000039364	ints5 (ENSXETG00000005580)	b3gat3 (ENSXETG00000005581)	rom1 (ENSXETG00000005582)	eml3 (ENSXETG00000005628)	ENSXETG00000043166	mta2 (ENSXETG00000005633)	ENSXETG00000005639	tut1 (ENSXETG00000005640)	eef1g (ENSXETG00000026372)	AHNAK (ENSXETG00000038117)
Leishan spiny toad	MODERN SPECIES	1	EFEMP2 (ENSLLEG00000009106)	FIBP (ENSLLEG00000008926)	CCDC85B (ENSLLEG00000008892)	FOSL1 (ENSLLEG00000008852)	ENSLLEG00000008794	ENSLLEG00000008723	ENSLLEG00000008673	ENSLLEG00000008466	ENSLLEG00000008358	ENSLLEG00000008324	ENSLLEG00000029724	CHKA (ENSLLEG00000029689)	KMT5B (ENSLLEG00000029633) #20	ENSLLEG00000029615	ENSLLEG00000029606	LRP5 (ENSLLEG00000029281) #22	GAL (ENSLLEG00000029187) #24	ENSLLEG00000029178	ENSLLEG00000029172	TESMIN (ENSLLEG00000029142) #25	UBXN1 (ENSLLEG00000029109)	ENSLLEG00000029099	ENSLLEG00000029081	CSKMT (ENSLLEG00000029072)	C11orf98 (ENSLLEG00000029057)	INTS5 (ENSLLEG00000029047)	ENSLLEG00000028862	B3GAT3 (ENSLLEG00000028791)	ROM1 (ENSLLEG00000028773)	EML3 (ENSLLEG00000028548)	ENSLLEG00000028468
Coelacanth	MODERN SPECIES	241	ENSLACG00000017792	ENSLACG00000017937	ENSLACG00000017988	ENSLACG00000018004	VWCE (ENSLACG00000018059)	ENSLACG00000018150	RASSF7 (ENSLACG00000018230)	ENSLACG00000018344	ENSLACG00000018370	HRAS (ENSLACG00000018427)	ENSLACG00000018456	ENSLACG00000018516	CHKA (ENSLACG00000018530)	KMT5B (ENSLACG00000018542) #20	ENSLACG00000018563	LRP5 (ENSLACG00000018584) #22	PPP6R3 (ENSLACG00000018653) #23	ENSLACG00000018675	GAL (ENSLACG00000018714) #24	TESMIN (ENSLACG00000018732) #25	CPT1A (ENSLACG00000018757) #26	ENSLACG00000018768	ENSLACG00000018789	MRPL21 (ENSLACG00000018790) #27	IGHMBP2 (ENSLACG00000018792) #28
Actinopterygii	ANCESTRAL SPECIES	174												ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000165046	ENSGT00940000159464	ENSGT00390000014700.b.a.a	ENSGT00940000160208	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000162463	ENSGT00940000155733.a.a	ENSGT00390000017767.a	ENSGT00940000160892	ENSGT01030000234858	ENSGT01030000234588.b.b.b.b.a
Reedfish	MODERN SPECIES	10	PLEKHA7 (ENSECRG00000003752)	C11orf58 (ENSECRG00000003724)	SOX6 (ENSECRG00000003717)	ENSECRG00000003710	INSC (ENSECRG00000003699)	ENSECRG00000003694	calca (ENSECRG00000003688)	CYP2R1 (ENSECRG00000003679)	PDE3B (ENSECRG00000003651)	psma1 (ENSECRG00000003640)	copb1 (ENSECRG00000003626)	rras2 (ENSECRG00000003612)	chka (ENSECRG00000003601)	kmt5b (ENSECRG00000003582) #20	ENSECRG00000003568 #21	lrp5 (ENSECRG00000003521) #22	tp53i11b (ENSECRG00000003497)	tspan18b (ENSECRG00000003485)	cd82b (ENSECRG00000003471)	ext2 (ENSECRG00000003453)	alx4b (ENSECRG00000003441)	ENSECRG00000003429	ENSECRG00000003422	ENSECRG00000003411	ENSECRG00000003401	ENSECRG00000003393	ENSECRG00000003387	ENSECRG00000003380	lmo2 (ENSECRG00000003364)	caprin1b (ENSECRG00000003317)	nat10 (ENSECRG00000003270)
Neopterygii	ANCESTRAL SPECIES	4	ENSGT00530000064489	ENSGT01060000250538	ENSGT00390000009140	ENSGT00940000153438.a	ENSGT00940000160199	ENSGT00940000159662	ENSGT00940000156620	ENSGT00940000157667	ENSGT00940000158481	ENSGT00390000017249	ENSGT00940000165046.b	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00390000001802	ENSGT00940000159464	ENSGT00390000014700.b.a.a	ENSGT00940000160208	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000162463	ENSGT00940000178524	ENSGT00940000155733.a.a	ENSGT00390000017767.a.b	ENSGT00940000160892
Spotted gar	MODERN SPECIES	666	PIK3C2A (ENSLOCG00000002963)	nucb2b (ENSLOCG00000002925)	nat10 (ENSLOCG00000002896)	caprin1b (ENSLOCG00000002861)	lmo2 (ENSLOCG00000002844)	alx4b (ENSLOCG00000002829)	ext2 (ENSLOCG00000002809)	tspan18b (ENSLOCG00000002791)	cd82b (ENSLOCG00000002767)	tp53i11b (ENSLOCG00000002759)	si:dkey-12e7.4 (ENSLOCG00000002722)	ENSLOCG00000002698	chka (ENSLOCG00000002673)	kmt5b (ENSLOCG00000002639) #20	ENSLOCG00000002620	lrp5 (ENSLOCG00000002586) #22	ppp6r3 (ENSLOCG00000002546) #23	ENSLOCG00000002512	gal (ENSLOCG00000002486) #24	zgc:110339 (ENSLOCG00000002463)	psmd13 (ENSLOCG00000002439)	sirt3 (ENSLOCG00000002426)	ric8a (ENSLOCG00000002406)	BET1L (ENSLOCG00000002376)	deaf1 (ENSLOCG00000002360)	drd4a (ENSLOCG00000002345)	ENSLOCG00000002337	ctsd (ENSLOCG00000002297)	ENSLOCG00000002283	SYT8 (ENSLOCG00000002263)	tnni2a.4 (ENSLOCG00000002237)
Osteoglossocephalai	ANCESTRAL SPECIES	105								ENSGT00940000157667.c	ENSGT00940000158481.c	ENSGT00390000017249.f	ENSGT00940000165046.b	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431 #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00990000204217	ENSGT00390000001802	ENSGT00940000159464	ENSGT00390000014700.b.a.a	ENSGT00940000160208	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000162463	ENSGT00940000164955.a	ENSGT00940000155733.a.a
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	107	ENSGT00940000155328	ENSGT00390000005270.d	ENSGT00550000074855.gc	ENSGT00940000159336.j	ENSGT00950000182939.b.b	ENSGT00940000156433.A.b	ENSGT00940000155817.a.a.b	ENSGT00390000001927.a.a.b	ENSGT00940000153438.a.u	ENSGT00940000159662.a	ENSGT00940000156620	ENSGT00940000157667.c	ENSGT00940000158481.c	ENSGT00390000017249.e	ENSGT00940000156431.d #20	ENSGT00940000156574.C.m #22	ENSGT00390000009899.a.d.q #23	ENSGT00390000014700.b.a.a.d	ENSGT00940000160208	ENSGT00940000160974.b.a	ENSGT00940000167812.b	ENSGT00940000153901.a.b.a	ENSGT00940000158477.a.b	ENSGT00950000182959.b.a.b	ENSGT00940000159916.c	ENSGT00940000160333	ENSGT00440000039564.a.b.b	ENSGT00940000161238.n	ENSGT01050000244857.A.a.b.c	ENSGT00940000157661.e.b	ENSGT00940000157462.C.c.a.b
P. kingsleyae	MODERN SPECIES	12	PDE3B (ENSPKIG00000016054)	ENSPKIG00000016040	calca (ENSPKIG00000016029)	ENSPKIG00000015999	sox6 (ENSPKIG00000015867)	PLEKHA7 (ENSPKIG00000015586)	rps13 (ENSPKIG00000015485)	NUCB2 (ENSPKIG00000015290)	caprin1a (ENSPKIG00000015169)	ALX4 (ENSPKIG00000015140)	ext2 (ENSPKIG00000015088)	TSPAN18 (ENSPKIG00000015030)	cd82b (ENSPKIG00000015005)	TP53I11 (ENSPKIG00000014988)	KMT5B (ENSPKIG00000014929) #20	lrp5 (ENSPKIG00000014824) #22	PPP6R3 (ENSPKIG00000014718) #23	ric8a (ENSPKIG00000014659)	BET1L (ENSPKIG00000014630)	DRD4 (ENSPKIG00000014609)	ctsd (ENSPKIG00000014578)	ENSPKIG00000014558	ENSPKIG00000014539	ENSPKIG00000014525	tnnt3a (ENSPKIG00000014475)	MYOD1 (ENSPKIG00000014431)	MOB2 (ENSPKIG00000014366)	DUSP8 (ENSPKIG00000014327)	PTPN5 (ENSPKIG00000014280)	ENSPKIG00000014235	ENSPKIG00000014210
Asian bonytongue	MODERN SPECIES	2	psma1 (ENSSFOG00015012567)	PDE3B (ENSSFOG00015028493)	CYP2R1 (ENSSFOG00015012536)	calca (ENSSFOG00015012523)	ENSSFOG00015012498	sox6 (ENSSFOG00015012462)	PLEKHA7 (ENSSFOG00015012391)	RPS13 (ENSSFOG00015012346)	caprin1a (ENSSFOG00015012323)	ALX4 (ENSSFOG00015027263)	ext2 (ENSSFOG00015012303)	tspan18b (ENSSFOG00015012258)	CD82 (ENSSFOG00015012215)	TP53I11 (ENSSFOG00015032032)	KMT5B (ENSSFOG00015012132) #20	lrp5 (ENSSFOG00015012061) #22	ENSSFOG00015011996 #23	ric8a (ENSSFOG00015028913)	BET1L (ENSSFOG00015024284)	DRD4 (ENSSFOG00015011928)	CTSD (ENSSFOG00015011884)	ENSSFOG00015011872	ENSSFOG00015011834	tnnt3a (ENSSFOG00015011790)	myod1 (ENSSFOG00015029499)	ENSSFOG00015011750	ENSSFOG00015011743	MOB2 (ENSSFOG00015011693)	DUSP8 (ENSSFOG00015027508)	PTPN5 (ENSSFOG00015011591)	ENSSFOG00015011522
Osteoglossiformes	ANCESTRAL SPECIES	63	ENSGT00940000157813	ENSGT00390000001927.a.a.a	ENSGT00530000064489	ENSGT00390000009140	ENSGT00940000153438.a.v	ENSGT00940000160199	ENSGT00940000159662.b	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00390000017249.f	ENSGT00940000165046.b	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431.c #20	ENSGT00940000153377.B #21	ENSGT00940000156574.C.n #22	ENSGT00390000009899.a.d.r #23	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00990000204217	ENSGT00390000001802	ENSGT00940000159464	ENSGT00390000014700.b.a.a.c	ENSGT00940000159701	ENSGT00940000160974.b.b	ENSGT00940000162463	ENSGT00940000164955.a	ENSGT00940000155733.a.a	ENSGT00390000017767.a.b	ENSGT00940000160892
Asian bonytongue	MODERN SPECIES	20	nrn1a (ENSSFOG00015025920)	RREB1 (ENSSFOG00015020665)	ssr1 (ENSSFOG00015020685)	ENSSFOG00015032167	ENSSFOG00015029105	ENSSFOG00015027941	ENSSFOG00015026705	tspan18a (ENSSFOG00015020727)	CD82 (ENSSFOG00015032131)	tp53i11b (ENSSFOG00015030808)	si:dkey-12e7.4 (ENSSFOG00015026488)	ENSSFOG00015024520	chka (ENSSFOG00015020803)	kmt5b (ENSSFOG00015030184) #20	ENSSFOG00015031659 #21	lrp5 (ENSSFOG00015020840) #22	ppp6r3 (ENSSFOG00015020902) #23	gal (ENSSFOG00015021022) #24	zgc:110339 (ENSSFOG00015021027)	ENSSFOG00015021037 #25	cox8b (ENSSFOG00015031585)	psmd13 (ENSSFOG00015021068)	sirt3 (ENSSFOG00015021098)	ric8a (ENSSFOG00015021112)	deaf1 (ENSSFOG00015021132)	DRD4 (ENSSFOG00015021145)	ENSSFOG00015021158	BTBD10 (ENSSFOG00015021165)	bmal1a (ENSSFOG00015021196)	ENSSFOG00015021255	RASSF10 (ENSSFOG00015021268)
P. kingsleyae	MODERN SPECIES	38				si:dkey-10o6.2 (ENSPKIG00000004206)	si:dkey-10o6.2 (ENSPKIG00000004183)	nat10 (ENSPKIG00000004093)	CAPRIN1 (ENSPKIG00000003997)	lmo2 (ENSPKIG00000003941)	ALX4 (ENSPKIG00000003924)	TSPAN18 (ENSPKIG00000003875)	cd82a (ENSPKIG00000003827)	tp53i11b (ENSPKIG00000003803)	chka (ENSPKIG00000003754)	kmt5b (ENSPKIG00000003691) #20	ENSPKIG00000003662 #21	lrp5 (ENSPKIG00000003575) #22	ppp6r3 (ENSPKIG00000003363) #23	gal (ENSPKIG00000003239) #24	ENSPKIG00000003206	ENSPKIG00000003177	zgc:110339 (ENSPKIG00000003141)	zgc:110339 (ENSPKIG00000003099)	ENSPKIG00000003044	cox8b (ENSPKIG00000003015)	psmd13 (ENSPKIG00000002977)	sirt3 (ENSPKIG00000002937)	ric8a (ENSPKIG00000002880)	deaf1 (ENSPKIG00000002796)	DRD4 (ENSPKIG00000002751)	ENSPKIG00000002707	ctsd (ENSPKIG00000002678)
Clupeocephala	ANCESTRAL SPECIES	2	ENSGT00520000055637.A.b	ENSGT00940000154158	ENSGT00390000005224	ENSGT00940000155645.j	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.b.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00530000063712.a.a.o.b	ENSGT00530000063712.a.a.o.a	ENSGT00940000154876.a.a.a.b	ENSGT00940000154876.a.a.a.a	ENSGT00970000193421.C.b	ENSGT00940000170837	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00990000204217
Euteleosteomorpha	ANCESTRAL SPECIES	1	ENSGT00550000074924	ENSGT00940000156978	ENSGT00940000155581.B	ENSGT00390000003374	ENSGT00940000158707.a.b	ENSGT00520000055637.A.b	ENSGT00940000154158	ENSGT00390000005224	ENSGT00940000155645.j	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.b.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000170837	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000161379 #25
Protacanthopterygii	ANCESTRAL SPECIES	42				ENSGT00550000074924	ENSGT00940000156978	ENSGT00940000155581.B	ENSGT00390000003374	ENSGT00940000158707.a.b	ENSGT00520000055637.A.b	ENSGT00940000154158	ENSGT00390000005224	ENSGT00940000155645.j	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000170837	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000163363	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00940000158636	ENSGT00940000158792	ENSGT00530000063868.b	ENSGT00810000125439.B.c.a	ENSGT00950000182818.B.a	ENSGT00940000157255.c.b	ENSGT01020000230394.e.a.a.a.a.b	ENSGT01100000263537.b.a.b	ENSGT00390000013052
Northern pike	MODERN SPECIES	18	jph3b (ENSELUG00000010714)	ZCCHC14 (ENSELUG00000010668)	map1lc3b (ENSELUG00000010626)	det1 (ENSELUG00000001233)	ntrk3a (ENSELUG00000010573)	AGBL1 (ENSELUG00000010501)	KLHL25 (ENSELUG00000010409)	ENSELUG00000010364	ENSELUG00000031032	SV2B (ENSELUG00000010267)	mespba (ENSELUG00000010218)	mespaa (ENSELUG00000033105)	ANPEP (ENSELUG00000001281)	anpepb.1 (ENSELUG00000010173)	ENSELUG00000025527 #21	lrp5 (ENSELUG00000010119) #22	ppp6r3 (ENSELUG00000010007) #23	ENSELUG00000009910	gal (ENSELUG00000031732) #24	zgc:110339 (ENSELUG00000009774)	ENSELUG00000009746 #25	ADAMTS20 (ENSELUG00000009675)	irak4 (ENSELUG00000009419)	twf1a (ENSELUG00000009405)	TMEM117 (ENSELUG00000009381)	ENSELUG00000029320	NELL2 (ENSELUG00000009344)	ENSELUG00000009310	szl (ENSELUG00000009294)	ENSELUG00000009263	NUAK1 (ENSELUG00000009225)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	196												ENSGT00530000063712.a.a.o.a.g	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00940000153377.B #21	ENSGT00940000156574.C.o.a #22	ENSGT00390000009899.a.d.n #23	ENSGT00940000167440	ENSGT00390000009663.l #24	ENSGT00940000165046.a.f	ENSGT00940000161379 #25	ENSGT00940000158636.k.a	ENSGT00940000158792.k	ENSGT00530000063868.b.j.a.b	ENSGT01100000263537.b.a.b.f	ENSGT00390000013052.m	ENSGT00810000125439.B.c.b.c.a	ENSGT01060000252138	ENSGT01060000248946.b	ENSGT00940000164657.c	ENSGT00940000165903
Salmoninae_a	ANCESTRAL SPECIES	13	ENSGT00390000003374	ENSGT00940000158707.a.b.m	ENSGT00520000055637.A.b.w	ENSGT00940000154158.b	ENSGT00390000005224.o	ENSGT00940000155645.j.e	ENSGT00940000160936	ENSGT00950000182983.B.b.f	ENSGT00940000154146.b.a.e.a	ENSGT00950000182940.b.a.a.g.a.c	ENSGT00530000063712.a.a.o.b.f	ENSGT00530000063712.a.a.o.a.g	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00940000153377.B.a #21	ENSGT00940000156574.C.o.a #22	ENSGT00390000009899.a.d.n #23	ENSGT00940000167440	ENSGT00390000009663.l #24	ENSGT00940000165046.a.f	ENSGT00940000161379 #25	ENSGT00940000158636.k.a	ENSGT00940000158792.k	ENSGT00530000063868.b.j.a.b	ENSGT01100000263537.b.a.b.f	ENSGT00390000013052.m	ENSGT00810000125439.B.c.b.c.a	ENSGT00950000183093.A.a.c	ENSGT00940000164657.c	ENSGT00940000165903	ENSGT00940000157255.c.a.c
Salmo	ANCESTRAL SPECIES	36	ENSGT00390000003374	ENSGT00940000158707.a.b.m	ENSGT00520000055637.A.b.w	ENSGT00940000154158.b	ENSGT00390000005224.o	ENSGT00940000155645.j.e	ENSGT00940000160936	ENSGT00950000182983.B.b.f	ENSGT00940000154146.b.a.e.a	ENSGT00950000182940.b.a.a.g.a.c	ENSGT00530000063712.a.a.o.b.f	ENSGT00530000063712.a.a.o.a.g	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00940000153377.B.a #21	ENSGT00940000156574.C.o.a #22	ENSGT00390000009899.a.d.n #23	ENSGT00940000167440	ENSGT00390000009663.l #24	ENSGT00940000165046.a.f	ENSGT00940000161379 #25	ENSGT00940000158636.k.a	ENSGT00940000158792.k	ENSGT00530000063868.b.j.a.b	ENSGT00390000013052.m	ENSGT00810000125439.B.c.b.c.a	ENSGT00950000183093.A.a.c	ENSGT01060000248946.b	ENSGT00940000164657.c	ENSGT00940000165903	ENSGT00940000157255.c.a.c
River trout	MODERN SPECIES	37	jph3b (ENSSTUG00000014436)	ZCCHC14 (ENSSTUG00000014465)	map1lc3b (ENSSTUG00000014471)	det1 (ENSSTUG00000014494)	ENSSTUG00000014510	ntrk3a (ENSSTUG00000014517)	ENSSTUG00000014724	AGBL1 (ENSSTUG00000014733)	KLHL25 (ENSSTUG00000014802)	ENSSTUG00000014808	SV2B (ENSSTUG00000014879)	ENSSTUG00000014987	ENSSTUG00000015001	anpepb.1 (ENSSTUG00000015042)	ENSSTUG00000015936 #21	lrp5 (ENSSTUG00000016009) #22	ppp6r3 (ENSSTUG00000018786) #23	ENSSTUG00000019388	gal (ENSSTUG00000019424) #24	zgc:110339 (ENSSTUG00000019432)	ENSSTUG00000019456 #25	ADAMTS20 (ENSSTUG00000019540)	ENSSTUG00000020586	irak4 (ENSSTUG00000020599)	twf1a (ENSSTUG00000020713)	TMEM117 (ENSSTUG00000020751)	NELL2 (ENSSTUG00000020827)	ENSSTUG00000021860	ENSSTUG00000021868	szl (ENSSTUG00000021890)	ENSSTUG00000021922
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000083835	map1lc3b (ENSSSAG00000083038)	det1 (ENSSSAG00000071755)	ENSSSAG00000086249	ntrk3a (ENSSSAG00000071080)	ENSSSAG00000070971	KLHL25 (ENSSSAG00000070961)	ENSSSAG00000102068	ENSSSAG00000070055	ENSSSAG00000070036	ENSSSAG00000070035	ENSSSAG00000109796	ENSSSAG00000091550	anpepb.1 (ENSSSAG00000064984)	ENSSSAG00000120845 #21	lrp5 (ENSSSAG00000064425) #22	saps3 (ENSSSAG00000063838) #23	ENSSSAG00000063794	gal (ENSSSAG00000090276) #24	zgc:110339 (ENSSSAG00000063764)	ENSSSAG00000063755 #25	ENSSSAG00000098032	ENSSSAG00000093384	ADAMTS20 (ENSSSAG00000062769)	irak4 (ENSSSAG00000062519)	twf1a (ENSSSAG00000062334)	TMEM117 (ENSSSAG00000063780)	NELL2 (ENSSSAG00000059676)	ENSSSAG00000059575	ENSSSAG00000059498	ENSSSAG00000059461
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT00390000003374	ENSGT00940000158707.a.b.m	ENSGT00520000055637.A.b.w	ENSGT00940000154158.b	ENSGT00390000005224.o	ENSGT00940000155645.j.e	ENSGT00940000160936	ENSGT00950000182983.B.b.f	ENSGT00940000154146.b.a.e.a	ENSGT00950000182940.b.a.a.g.a.c	ENSGT00530000063712.a.a.o.b.f	ENSGT00530000063712.a.a.o.a.g	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00940000153377.B.a #21	ENSGT00940000156574.C.o.a #22	ENSGT00390000009899.a.d.n #23	ENSGT00940000167440	ENSGT00390000009663.l #24	ENSGT00940000165046.a.f	ENSGT00940000161379 #25	ENSGT00940000158636.k.a	ENSGT00940000158792.k	ENSGT00530000063868.b.j.a.b	ENSGT01100000263537.b.a.b.f.a.b	ENSGT00390000013052.m	ENSGT00810000125439.B.c.b.c.a	ENSGT00950000183093.A.a.c	ENSGT00940000164657.c	ENSGT00940000165903	ENSGT00940000157255.c.a.c
Rainbow trout	MODERN SPECIES	11	det1 (ENSOMYG00000039690)	ENSOMYG00000063121	ntrk3a (ENSOMYG00000039502)	ENSOMYG00000039327	ENSOMYG00000052587	KLHL25 (ENSOMYG00000039245)	ENSOMYG00000072284	ENSOMYG00000039237	ENSOMYG00000074182	ENSOMYG00000039201	mespbb (ENSOMYG00000039175)	ENSOMYG00000039168	ENSOMYG00000038037	anpepb.1 (ENSOMYG00000037287)	ENSOMYG00000037142 #21	lrp5 (ENSOMYG00000033413) #22	ppp6r3 (ENSOMYG00000031697) #23	ENSOMYG00000031358	ENSOMYG00000070518	gal (ENSOMYG00000031338) #24	zgc:110339 (ENSOMYG00000031331)	ENSOMYG00000031321 #25	ADAMTS20 (ENSOMYG00000031161)	irak4 (ENSOMYG00000030965)	twf1a (ENSOMYG00000030886)	ENSOMYG00000030862	TMEM117 (ENSOMYG00000030850)	NELL2 (ENSOMYG00000030051)	ENSOMYG00000029451	ENSOMYG00000075679	ENSOMYG00000029404
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00390000003374	ENSGT00940000158707.a.b.m	ENSGT00520000055637.A.b.w	ENSGT00940000154158.b	ENSGT00390000005224.o	ENSGT00940000155645.j.e	ENSGT00940000160936	ENSGT00950000182983.B.b.f	ENSGT00940000154146.b.a.e.a	ENSGT00950000182940.b.a.a.g.a.c	ENSGT00530000063712.a.a.o.b.f	ENSGT00530000063712.a.a.o.a.g	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00940000153377.B.a #21	ENSGT00940000156574.C.o.a #22	ENSGT00390000009899.a.d.n #23	ENSGT00940000167440	ENSGT00390000009663.l #24	ENSGT00940000163363	ENSGT00940000161379 #25	ENSGT00940000158636.k.a	ENSGT01010000229777	ENSGT00940000158792.k	ENSGT00530000063868.b.j.a.b	ENSGT01100000263537.b.a.b.f.a.b	ENSGT00390000013052.m	ENSGT00810000125439.B.c.b.c.a	ENSGT00950000183093.A.a.c	ENSGT00940000164657.c	ENSGT00940000165903
Coho salmon	MODERN SPECIES	14	jph3b (ENSOKIG00005045638)	ZCCHC14 (ENSOKIG00005045625)	map1lc3b (ENSOKIG00005045603)	det1 (ENSOKIG00005045588)	ENSOKIG00005045583	ntrk3a (ENSOKIG00005045529)	AGBL1 (ENSOKIG00005045512)	KLHL25 (ENSOKIG00005045508)	ENSOKIG00005045482	ENSOKIG00005045412	ENSOKIG00005045387	ENSOKIG00005045363	ANPEP (ENSOKIG00005045301)	anpepb.1 (ENSOKIG00005044079)	ENSOKIG00005043979 #21	lrp5 (ENSOKIG00005038566) #22	ppp6r3 (ENSOKIG00005037193) #23	ENSOKIG00005037107	gal (ENSOKIG00005037096) #24	ENSOKIG00005037033	ENSOKIG00005036974 #25	ADAMTS20 (ENSOKIG00005036052)	ENSOKIG00005035940	irak4 (ENSOKIG00005035877)	twf1a (ENSOKIG00005035862)	ENSOKIG00005035842	TMEM117 (ENSOKIG00005035753)	NELL2 (ENSOKIG00005032521)	ENSOKIG00005032408	szl (ENSOKIG00005032386)	ENSOKIG00005031965
Chinook salmon	MODERN SPECIES	10	ENSOTSG00005031692	ENSOTSG00005031690	map1lc3b (ENSOTSG00005031689)	det1 (ENSOTSG00005031688)	ntrk3a (ENSOTSG00005031685)	AGBL1 (ENSOTSG00005031683)	KLHL25 (ENSOTSG00005031682)	ENSOTSG00005031679	ENSOTSG00005031678	SV2B (ENSOTSG00005031674)	ENSOTSG00005031671	ENSOTSG00005031670	ENSOTSG00005031404	anpepb.1 (ENSOTSG00005030586)	ENSOTSG00005030572	lrp5 (ENSOTSG00005027040) #22	ppp6r3 (ENSOTSG00005026234) #23	ENSOTSG00005026223	gal (ENSOTSG00005026218) #24	ENSOTSG00005026216	ENSOTSG00005026214 #25	ADAMTS20 (ENSOTSG00005025519)	ENSOTSG00005025493	irak4 (ENSOTSG00005025491)	twf1a (ENSOTSG00005025490)	ENSOTSG00005025489	TMEM117 (ENSOTSG00005025488)	NELL2 (ENSOTSG00005021158)	ENSOTSG00005021146	ENSOTSG00005021144	szl (ENSOTSG00005021141)
Huchen	MODERN SPECIES	1341												ENSHHUG00000024581	ANPEP (ENSHHUG00000024524)	anpepb.1 (ENSHHUG00000024366)	ENSHHUG00000024359	lrp5 (ENSHHUG00000023527) #22	ppp6r3 (ENSHHUG00000023465) #23	ENSHHUG00000023443	gal (ENSHHUG00000023248) #24	ENSHHUG00000023238	ENSHHUG00000023228 #25	ADAMTS20 (ENSHHUG00000022817)
Salmoninae	ANCESTRAL SPECIES	578											ENSGT00950000182940.b.a.a.g.a.d	ENSGT00530000063712.a.a.o.b.e	ENSGT00530000063712.a.a.o.a.h	ENSGT00940000154876.a.a.b	ENSGT00940000170837.a	ENSGT00940000156574.C.o.b #22	ENSGT00390000009899.a.d.m #23	ENSGT00390000009663.k #24	ENSGT00940000165046.a.e	ENSGT00940000158636.k.b	ENSGT00940000168978	ENSGT01000000220683	ENSGT00940000158792.l	ENSGT00530000063868.b.j.a.a	ENSGT01030000234621.E	ENSGT00390000013052.n	ENSGT00810000125439.B.c.b.c.b
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00550000074924.b	ENSGT00940000156978.lb	ENSGT00940000155581.B.c.b	ENSGT00950000183052.b.c.b.a.e.b.b	ENSGT00940000158707.a.b.n	ENSGT00520000055637.A.b.x	ENSGT00940000154158.a	ENSGT00390000005224.p	ENSGT00940000155645.j.f	ENSGT00950000182983.B.b.e	ENSGT00940000154146.b.a.e.b	ENSGT00950000182940.b.a.a.g.a.d	ENSGT00530000063712.a.a.o.b.e	ENSGT00530000063712.a.a.o.a.h	ENSGT00940000153377.B.b #21	ENSGT00940000156574.C.o.b #22	ENSGT00390000009899.a.d.m #23	ENSGT00390000009663.k #24	ENSGT00940000165046.a.e	ENSGT00940000158636.k.b	ENSGT00940000168978	ENSGT01000000220683	ENSGT00940000158792.l	ENSGT00530000063868.b.j.a.a	ENSGT01030000234621.E	ENSGT00390000013052.n	ENSGT00810000125439.B.c.b.c.b	ENSGT00940000156523.b.c.d	ENSGT00940000159142.v	ENSGT00940000157113.c.a	ENSGT00940000161332.j
Salmo	ANCESTRAL SPECIES	9	ENSGT00550000074924.b	ENSGT00940000156978.lb	ENSGT00940000155581.B.c.b	ENSGT00950000183052.b.c.b.a.e.b.b	ENSGT00940000158707.a.b.n	ENSGT00520000055637.A.b.x	ENSGT00940000154158.a	ENSGT00390000005224.p	ENSGT00940000155645.j.f	ENSGT00950000182983.B.b.e	ENSGT00940000154146.b.a.e.b	ENSGT00950000182940.b.a.a.g.a.d	ENSGT00530000063712.a.a.o.b.e	ENSGT00530000063712.a.a.o.a.h	ENSGT00940000153377.B.b #21	ENSGT00940000156574.C.o.b #22	ENSGT00390000009899.a.d.m #23	ENSGT00390000009663.k #24	ENSGT00940000165046.a.e	ENSGT00940000158636.k.b	ENSGT00940000158792.l	ENSGT00530000063868.b.j.a.a	ENSGT01030000234621.E	ENSGT00390000013052.n	ENSGT00810000125439.B.c.b.c.b	ENSGT00940000156523.b.c.d	ENSGT00940000159142.v	ENSGT00940000157113.c.a	ENSGT00940000161332.j	ENSGT00940000158050.h.b.a	ENSGT00390000009230.a.e
River trout	MODERN SPECIES	8	ENSSTUG00000005341	jph3b (ENSSTUG00000005325)	ENSSTUG00000005309	map1lc3b (ENSSTUG00000005247)	det1 (ENSSTUG00000005229)	ntrk3a (ENSSTUG00000005163)	ENSSTUG00000005151	KLHL25 (ENSSTUG00000005145)	ENSSTUG00000005140	ENSSTUG00000005058	ENSSTUG00000005028	ENSSTUG00000004676	ENSSTUG00000004647	mespaa (ENSSTUG00000004640)	ENSSTUG00000004627	lrp5 (ENSSTUG00000004468) #22	ppp6r3 (ENSSTUG00000003338) #23	gal (ENSSTUG00000003271) #24	zgc:110339 (ENSSTUG00000003255)	ADAMTS20 (ENSSTUG00000002633)	ENSSTUG00000002563	IRAK4 (ENSSTUG00000002398)	twf1a (ENSSTUG00000002299)	ENSSTUG00000012720	TMEM117 (ENSSTUG00000012667)	NELL2 (ENSSTUG00000011734)	ENSSTUG00000011607	bsg (ENSSTUG00000011562)	RNF126 (ENSSTUG00000011546)	fstl3 (ENSSTUG00000011532)	STK11 (ENSSTUG00000011517)
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000054559	jph3b (ENSSSAG00000054563)	ZCCHC14 (ENSSSAG00000054569)	map1lc3b (ENSSSAG00000054579)	DET1 (ENSSSAG00000054657)	ntrk3a (ENSSSAG00000054707)	ENSSSAG00000102723	ENSSSAG00000112925	ENSSSAG00000056667	ENSSSAG00000056674	ENSSSAG00000114902	ENSSSAG00000056712	ENSSSAG00000056732	ENSSSAG00000056736	ENSSSAG00000056741 #21	lrp5 (ENSSSAG00000056819) #22	ppp6r3 (ENSSSAG00000059393) #23	zgc:110339 (ENSSSAG00000063431)	ADAMTS20 (ENSSSAG00000063455)	ENSSSAG00000107042	irak4 (ENSSSAG00000063712)	twf1 (ENSSSAG00000063743)	ENSSSAG00000088184	TMEM117 (ENSSSAG00000062151)	NELL2 (ENSSSAG00000063844)	ENSSSAG00000064939	bsg (ENSSSAG00000094020)	ENSSSAG00000065197	fstl3 (ENSSSAG00000097227)	STK11 (ENSSSAG00000065291)	CBARP (ENSSSAG00000121542)
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00550000074924.b	ENSGT00940000156978.lb	ENSGT00940000155581.B.c.b	ENSGT00950000183052.b.c.b.a.e.b.b	ENSGT00940000158707.a.b.n	ENSGT00520000055637.A.b.x	ENSGT00940000154158.a	ENSGT00390000005224.p	ENSGT00940000155645.j.f	ENSGT00950000182983.B.b.e	ENSGT00940000154146.b.a.e.b	ENSGT00950000182940.b.a.a.g.a.d	ENSGT00530000063712.a.a.o.b.e	ENSGT00530000063712.a.a.o.a.h	ENSGT00940000153377.B.b #21	ENSGT00940000156574.C.o.b #22	ENSGT00390000009899.a.d.m #23	ENSGT00390000009663.k #24	ENSGT00940000165046.a.e	ENSGT00940000158636.k.b	ENSGT00940000168978	ENSGT01000000220683	ENSGT00530000063868.b.j.a.a	ENSGT01100000263537.b.a.b.f.a.a	ENSGT00390000013052.n	ENSGT00810000125439.B.c.b.c.b	ENSGT00940000156523.b.c.d	ENSGT00940000159142.v	ENSGT00940000157113.c.a	ENSGT00940000161332.j	ENSGT00940000181603.b
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00550000074924.b	ENSGT00940000156978.lb	ENSGT00940000155581.B.c.b	ENSGT01030000234576.D.a.b.a.a.a.a.b.a	ENSGT00940000158707.a.b.n	ENSGT00520000055637.A.b.x	ENSGT00940000154158.a	ENSGT00390000005224.p	ENSGT00940000155645.j.f	ENSGT00950000182983.B.b.e	ENSGT00940000154146.b.a.e.b	ENSGT00950000182940.b.a.a.g.a.d	ENSGT00530000063712.a.a.o.b.e	ENSGT00530000063712.a.a.o.a.h	ENSGT00940000153377.B.b #21	ENSGT00940000156574.C.o.b #22	ENSGT00390000009899.a.d.m #23	ENSGT00390000009663.k #24	ENSGT00940000165046.a.e	ENSGT00940000158636.k.b	ENSGT00940000168978	ENSGT01000000220683	ENSGT00530000063868.b.j.a.a	ENSGT01100000263537.b.a.b.f.a.a	ENSGT00390000013052.n	ENSGT00810000125439.B.c.b.c.b	ENSGT00940000156523.b.c.d	ENSGT00940000159142.v	ENSGT00940000157113.c.a	ENSGT00940000161332.j	ENSGT00940000158050.h.b.a
Coho salmon	MODERN SPECIES	24	jph3b (ENSOKIG00005031375)	ENSOKIG00005031347	map1lc3b (ENSOKIG00005031279)	det1 (ENSOKIG00005031237)	ENSOKIG00005031228	ENSOKIG00005031224	ntrk3a (ENSOKIG00005031153)	ENSOKIG00005031134	ENSOKIG00005031068	KLHL25 (ENSOKIG00005031064)	ENSOKIG00005030968	ENSOKIG00005030168	ENSOKIG00005030082	mespaa (ENSOKIG00005030065)	ENSOKIG00005030040 #21	lrp5 (ENSOKIG00005029138) #22	ppp6r3 (ENSOKIG00005028858) #23	gal (ENSOKIG00005028823) #24	zgc:110339 (ENSOKIG00005028813)	ADAMTS20 (ENSOKIG00005028392)	ENSOKIG00005028343	ENSOKIG00005028327	twf1a (ENSOKIG00005028249)	ENSOKIG00005028235	TMEM117 (ENSOKIG00005028197)	ENSOKIG00005028192	NELL2 (ENSOKIG00005026000)	ENSOKIG00005025901	ENSOKIG00005025830	bsg (ENSOKIG00005025813)	RNF126 (ENSOKIG00005025787)
Chinook salmon	MODERN SPECIES	30	slc7a5 (ENSOTSG00005028652)	ENSOTSG00005028651	jph3b (ENSOTSG00005028650)	ENSOTSG00005044279	ENSOTSG00005044278	ENSOTSG00005044277	map1lc3b (ENSOTSG00005044275)	det1 (ENSOTSG00005044273)	ntrk3a (ENSOTSG00005044226)	KLHL25 (ENSOTSG00005044225)	ENSOTSG00005044220	ENSOTSG00005044206	ENSOTSG00005044205	mespaa (ENSOTSG00005044204)	ENSOTSG00005044203 #21	lrp5 (ENSOTSG00005039690) #22	ppp6r3 (ENSOTSG00005038577) #23	gal (ENSOTSG00005038559) #24	zgc:110339 (ENSOTSG00005038557)	ADAMTS20 (ENSOTSG00005038509)	ENSOTSG00005038496	ENSOTSG00005038494	twf1a (ENSOTSG00005038493)	TMEM117 (ENSOTSG00005038492)	NELL2 (ENSOTSG00005034120)	ENSOTSG00005034048	bsg (ENSOTSG00005034047)	RNF126 (ENSOTSG00005034046)	hapln4 (ENSOTSG00005034045)	tm6sf2b (ENSOTSG00005034044)	ENSOTSG00005034043
Rainbow trout	MODERN SPECIES		ENSOMYG00000021590	jph3b (ENSOMYG00000021582)	ENSOMYG00000072661	ENSOMYG00000021572	ZCCHC14 (ENSOMYG00000021564)	map1lc3b (ENSOMYG00000077514)	det1 (ENSOMYG00000021514)	ENSOMYG00000070361	ntrk3a (ENSOMYG00000021434)	ENSOMYG00000021312	ENSOMYG00000021264	ENSOMYG00000021242	ENSOMYG00000021108	ENSOMYG00000021029	ENSOMYG00000021023	lrp5 (ENSOMYG00000020005) #22	ppp6r3 (ENSOMYG00000072211) #23	gal (ENSOMYG00000019845) #24	zgc:110339 (ENSOMYG00000019835)	ENSOMYG00000069570	ENSOMYG00000017613	ENSOMYG00000017356	ENSOMYG00000072210	twf1a (ENSOMYG00000017167)	ENSOMYG00000017145	ENSOMYG00000070427	ENSOMYG00000017060	NELL2 (ENSOMYG00000020216)	ENSOMYG00000019741	bsg (ENSOMYG00000019675)	ENSOMYG00000019669
Huchen	MODERN SPECIES	386											ENSHHUG00000042235	ENSHHUG00000042225	mespaa (ENSHHUG00000042221)	ENSHHUG00000042187	ENSHHUG00000042185	lrp5 (ENSHHUG00000041905) #22	ppp6r3 (ENSHHUG00000041816) #23	gal (ENSHHUG00000041790) #24	zgc:110339 (ENSHHUG00000041786)	ADAMTS20 (ENSHHUG00000041523)	ENSHHUG00000041514	ENSHHUG00000041506	twf1a (ENSHHUG00000041442)	TMEM117 (ENSHHUG00000041433)	NELL2 (ENSHHUG00000041075)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000156574.C.p #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000156574.C.p #22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000156574.C.p #22
Atlantic salmon	MODERN SPECIES	330													ENSSSAG00000118095	ENSSSAG00000092710	ENSSSAG00000089733	ENSSSAG00000108733 #22
Huchen	MODERN SPECIES	8961																ENSHHUG00000002344 #22
Acanthomorphata	ANCESTRAL SPECIES	298												ENSGT00940000157816.a.a #35	ENSGT00390000014700.b.a.a	ENSGT01010000222986	ENSGT00940000170837	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000168375
Cod	MODERN SPECIES	22	ENSGMOG00000019203	ENSGMOG00000032618	rlbp1b (ENSGMOG00000019212)	ABHD2 (ENSGMOG00000019225)	mfge8b (ENSGMOG00000019232)	hapln3 (ENSGMOG00000036173)	ENSGMOG00000019249	ENSGMOG00000019258	ENSGMOG00000031046	scamp2 (ENSGMOG00000019326)	ENSGMOG00000019331	plex9.2 (ENSGMOG00000019335)	ENSGMOG00000017080	ENSGMOG00000032835	ENSGMOG00000026830 #21	lrp5 (ENSGMOG00000016796) #22	ppp6r3 (ENSGMOG00000016852) #23	gal (ENSGMOG00000018363) #24	ENSGMOG00000012797	shank2b (ENSGMOG00000025746)	zgc:101566 (ENSGMOG00000029067)	cry2 (ENSGMOG00000016049)	ENSGMOG00000025489	cstpp1 (ENSGMOG00000018002)	ENSGMOG00000018013	ENSGMOG00000036393	ENSGMOG00000036034	ENSGMOG00000018064	ENSGMOG00000018154	ENSGMOG00000022184	ENSGMOG00000016032
Euacanthomorphacea	ANCESTRAL SPECIES	30												ENSGT00940000157816.a.a #35	ENSGT00390000014700.b.a.a	ENSGT01010000222986	ENSGT00940000170837	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000163363	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00950000182983.B.b	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00390000004930	ENSGT00950000183093.B.a.a	ENSGT00390000014757	ENSGT00390000012935
Pinecone sodierfish	MODERN SPECIES	20	RPL27A (ENSMMDG00005005745)	ranbp10 (ENSMMDG00005003529)	ENSMMDG00005003500	nutf2 (ENSMMDG00005003497)	edc4 (ENSMMDG00005002120)	NRN1L (ENSMMDG00005002068)	pskh1 (ENSMMDG00005002062)	mbtps1 (ENSMMDG00005000710)	SLC38A8 (ENSMMDG00005000587)	necab2 (ENSMMDG00005000575)	CCND1 (ENSMMDG00005000547) #35	ENSMMDG00005000546	ric8a (ENSMMDG00005000536)	ENSMMDG00005000528	ENSMMDG00005000525	lrp5 (ENSMMDG00005000517) #22	ppp6r3 (ENSMMDG00005000395) #23	gal (ENSMMDG00005000292) #24	zgc:110339 (ENSMMDG00005000282)	ENSMMDG00005000272	pard6a (ENSMMDG00005000249)	NTRK3 (ENSMMDG00005000233)	ENSMMDG00005000224	ENSMMDG00005000201	ska1 (ENSMMDG00005000177)	ENSMMDG00005000146	ENSMMDG00005000133	ENSMMDG00005000117	ENSMMDG00005014650	ENSMMDG00005014648	KLHL25 (ENSMMDG00005014637)
Percomorphaceae	ANCESTRAL SPECIES	249															ENSGT00940000153377.B #21	ENSGT00940000156574.C #22
Percomorphaceae_B	ANCESTRAL SPECIES	5					ENSGT00940000157182.g.a	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00950000182940.b.a.a.g.a
Percomorphaceae_C	ANCESTRAL SPECIES	5					ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00950000182940.b.a.a.g.a
Percomorphaceae_D	ANCESTRAL SPECIES	5					ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b
Carangaria	ANCESTRAL SPECIES	36					ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Pleuronectoidei	ANCESTRAL SPECIES	91						ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Turbot	MODERN SPECIES	1	api5 (ENSSMAG00000004332)	ENSSMAG00000031849	ENSSMAG00000004289	ENSSMAG00000004277	ENSSMAG00000004259	ENSSMAG00000004243	ENSSMAG00000004223	ripor1 (ENSSMAG00000004172)	ENSSMAG00000004154	carmil2 (ENSSMAG00000004112)	ENSSMAG00000004083	ENSSMAG00000003943 #23	ENSSMAG00000034988	ENSSMAG00000003916	ENSSMAG00000034370 #21	ENSSMAG00000003833 #22	ENSSMAG00000003806 #35	ENSSMAG00000003794	ENSSMAG00000003746	ENSSMAG00000003724	ENSSMAG00000035143	ENSSMAG00000003708 #24	ENSSMAG00000003695	ENSSMAG00000022941	ENSSMAG00000003646	ENSSMAG00000003658	ENSSMAG00000003606	urahb (ENSSMAG00000026967)	ENSSMAG00000003532	GLG1 (ENSSMAG00000003223)	ENSSMAG00000003188
Tongue sole	MODERN SPECIES	16	ENSCSEG00000021191	ENSCSEG00000021190	kitlga (ENSCSEG00000021184)	ENSCSEG00000021136	ENSCSEG00000021135	ENSCSEG00000021134	ripor1 (ENSCSEG00000021133)	ctcf (ENSCSEG00000021131)	carmil2 (ENSCSEG00000021128)	ric8a (ENSCSEG00000021127)	ppp6r3 (ENSCSEG00000021125) #23	tmem170a (ENSCSEG00000021124)	ENSCSEG00000021123	ENSCSEG00000021122 #21	ENSCSEG00000021121	lrp5 (ENSCSEG00000021120) #22	necab2 (ENSCSEG00000021020)	ENSCSEG00000021016	pnp6 (ENSCSEG00000021014)	calb2a (ENSCSEG00000021011)	ENSCSEG00000021008	ENSCSEG00000015402	ENSCSEG00000014534	ENSCSEG00000014497	ENSCSEG00000014480	ENSCSEG00000014438	NLRC5 (ENSCSEG00000014377)	cpne2 (ENSCSEG00000014332)	psme3ip1 (ENSCSEG00000014297)	exosc6 (ENSCSEG00000014277)	aars1 (ENSCSEG00000014258)
Carangaria_A	ANCESTRAL SPECIES	87					ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Seriola	ANCESTRAL SPECIES	121	ENSGT00940000165415.i	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT00940000168817.u	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000168375	ENSGT00940000174862	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a
Greater amberjack	MODERN SPECIES	144	ENSSDUG00000019890	ENSSDUG00000019901	ENSSDUG00000019911	ENSSDUG00000019922	ENSSDUG00000019945	ripor1 (ENSSDUG00000019954)	ENSSDUG00000020012	ctcf (ENSSDUG00000020026)	carmil2 (ENSSDUG00000020088)	ric8a (ENSSDUG00000020163)	ppp6r3 (ENSSDUG00000020348) #23	tmem170a (ENSSDUG00000020432)	ENSSDUG00000020450	ENSSDUG00000020533	ENSSDUG00000020537	lrp5 (ENSSDUG00000020552) #22	CCND1 (ENSSDUG00000020651) #35	zgc:158868 (ENSSDUG00000020658)	bcar1 (ENSSDUG00000020666)	cfdp1 (ENSSDUG00000020700)	gal (ENSSDUG00000020710) #24	ENSSDUG00000020719	ENSSDUG00000020746	pard6a (ENSSDUG00000020755)	ENSSDUG00000020763	NTRK3 (ENSSDUG00000020777)
Yellowtail amberjack	MODERN SPECIES	3283	ENSSLDG00000001850	ENSSLDG00000001860	ENSSLDG00000001894	ENSSLDG00000001910	ENSSLDG00000001945	ripor1 (ENSSLDG00000001962)	ENSSLDG00000002045	ENSSLDG00000002062	carmil2 (ENSSLDG00000002091)	ric8a (ENSSLDG00000002223)	ppp6r3 (ENSSLDG00000002277) #23	tmem170a (ENSSLDG00000002446)	ENSSLDG00000002468	ENSSLDG00000002475	ENSSLDG00000002485	lrp5 (ENSSLDG00000002497) #22	ENSSLDG00000002623	CCND1 (ENSSLDG00000002651) #35	zgc:158868 (ENSSLDG00000002661)	ENSSLDG00000002674	bcar1 (ENSSLDG00000002694)	ENSSLDG00000002737	ENSSLDG00000002774	pard6a (ENSSLDG00000002806)	NTRK3 (ENSSLDG00000002828)	ENSSLDG00000002920	septin15 (ENSSLDG00000002936)	ENSSLDG00000003009	ENSSLDG00000003039	ENSSLDG00000003074	exoc3l1 (ENSSLDG00000003124)
Barramundi perch	MODERN SPECIES	7	ENSLCAG00010001015	ENSLCAG00010000773	WFIKKN2 (ENSLCAG00010000612)	ENSLCAG00010000605	ENSLCAG00010000594	ENSLCAG00010000501	ENSLCAG00010000464	ripor1 (ENSLCAG00010000438)	ENSLCAG00010000421	carmil2 (ENSLCAG00010000393)	ric8a (ENSLCAG00010000369)	ppp6r3 (ENSLCAG00010000235) #23	tmem170a (ENSLCAG00010000143)	ENSLCAG00010025811	ENSLCAG00010025808 #21	lrp5 (ENSLCAG00010025409) #22	CCND1 (ENSLCAG00010025075) #35	ENSLCAG00010025070	bcar1 (ENSLCAG00010025054)	cfdp1 (ENSLCAG00010025045)	gal (ENSLCAG00010025039) #24	zgc:110339 (ENSLCAG00010025033)	pard6a (ENSLCAG00010025026)	ENSLCAG00010025023	NTRK3 (ENSLCAG00010024984)	ENSLCAG00010024966	ENSLCAG00010024956	ska1 (ENSLCAG00010024953)	ENSLCAG00010024950	ENSLCAG00010024940	KLHL25 (ENSLCAG00010024928)
Anabantaria	ANCESTRAL SPECIES	5						ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000153377.B #21	ENSGT01100000263627	ENSGT00940000159189	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00950000182940.b.a.a.g.a
Anabantoidei	ANCESTRAL SPECIES	5												ENSGT00940000170837	ENSGT01100000263627	ENSGT00940000159189	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00950000182940.b.a.a.g.a
Climbing perch	MODERN SPECIES	19				ENSATEG00000027403	ENSATEG00000003391	ENSATEG00000007671	ENSATEG00000003425	ENSATEG00000003489 #23	ENSATEG00000003530	carmil2 (ENSATEG00000003884)	ENSATEG00000003920	ripor1 (ENSATEG00000003983)	tmem170a (ENSATEG00000004279)	ENSATEG00000004298	ENSATEG00000028027 #21	lrp5 (ENSATEG00000004330) #22	ENSATEG00000004455 #35	ENSATEG00000004461	ENSATEG00000004489	ENSATEG00000004519	ENSATEG00000004528 #24	ENSATEG00000025433	ENSATEG00000028198	ENSATEG00000027608	ENSATEG00000004568	ENSATEG00000004639	ENSATEG00000004732	ENSATEG00000026940	ENSATEG00000004743	ENSATEG00000004791	ENSATEG00000004830
Siamese fighting fish	MODERN SPECIES	17	chst6 (ENSBSLG00000009301)	ENSBSLG00000009313	ENSBSLG00000009319	ENSBSLG00000009322	ripor1 (ENSBSLG00000009335)	ENSBSLG00000009411	ctcf (ENSBSLG00000009419)	carmil2 (ENSBSLG00000009476)	ric8a (ENSBSLG00000009558)	ppp6r3 (ENSBSLG00000009581) #23	ENSBSLG00000010711	ENSBSLG00000011073	ENSBSLG00000011081	ENSBSLG00000011085	tmem170a (ENSBSLG00000011092)	lrp5 (ENSBSLG00000012094) #22	bcar1 (ENSBSLG00000016700)	ENSBSLG00000016882	cfdp1 (ENSBSLG00000016889)	gal (ENSBSLG00000000523) #24	pard6a (ENSBSLG00000000593)	NTRK3 (ENSBSLG00000000671)	ENSBSLG00000000758	ENSBSLG00000000761	ENSBSLG00000000776	setd6 (ENSBSLG00000000802)	cnot1 (ENSBSLG00000000845)	si:ch211-216l23.2 (ENSBSLG00000000885)	znf423 (ENSBSLG00000000898)	ENSBSLG00000000943	si:ch211-212o1.2 (ENSBSLG00000000946)
Zig-zag eel	MODERN SPECIES	20	ENSMAMG00000011633	ENSMAMG00000011543	ENSMAMG00000011489	ENSMAMG00000011461	ENSMAMG00000011442	ENSMAMG00000011435	ENSMAMG00000011432	ripor1 (ENSMAMG00000011408)	ENSMAMG00000011357	carmil2 (ENSMAMG00000011349)	ENSMAMG00000011327	ENSMAMG00000011235 #23	ENSMAMG00000024413	ENSMAMG00000011203	ENSMAMG00000011195 #21	lrp5 (ENSMAMG00000011108) #22	ENSMAMG00000011083 #35	ENSMAMG00000011067	ENSMAMG00000011047	ENSMAMG00000011032 #24	ENSMAMG00000025706	ENSMAMG00000010975	ENSMAMG00000010952	ENSMAMG00000010933	ADM2 (ENSMAMG00000010921)	miox (ENSMAMG00000010886)	lmf2a (ENSMAMG00000010878)	c2cd5 (ENSMAMG00000010750)	ENSMAMG00000010703	fkbp4 (ENSMAMG00000010684)	ddx11 (ENSMAMG00000010598)
Eupercaria	ANCESTRAL SPECIES	33															ENSGT00940000170837	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000153377.B #21	ENSGT01100000263627	ENSGT00940000159189	ENSGT00390000009899.a.d #23	ENSGT00390000014700.b.a.a	ENSGT00940000155112.A.c	ENSGT00940000156672.o.a	ENSGT00940000153717.b.g	ENSGT00390000005430	ENSGT00940000155391.a.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000156574.C #22
Fugu	MODERN SPECIES	21	ENSTRUG00000003072	psme3ip1 (ENSTRUG00000002671)	ENSTRUG00000031291	ENSTRUG00000031943	ENSTRUG00000026522	ENSTRUG00000027879	ENSTRUG00000021272	ENSTRUG00000023672	tmem170a (ENSTRUG00000021185)	ppp6r3 (ENSTRUG00000004409) #23	ric8a (ENSTRUG00000017385)	ENSTRUG00000030938	ENSTRUG00000017382	ENSTRUG00000017375	ANO1 (ENSTRUG00000017361)	lrp5 (ENSTRUG00000017350) #22	KLHL25 (ENSTRUG00000033145)	ska1 (ENSTRUG00000017348)	zc3h18 (ENSTRUG00000027014)	ENSTRUG00000030030
Tetraodon	MODERN SPECIES	26	ENSTNIG00000006767	ENSTNIG00000000809	ENSTNIG00000000615	ENSTNIG00000000765	ENSTNIG00000001463	ENSTNIG00000000229	ENSTNIG00000006766	ENSTNIG00000006764	ENSTNIG00000019057	ripor1 (ENSTNIG00000019058)	ENSTNIG00000014175	tmem170a (ENSTNIG00000014176)	ppp6r3 (ENSTNIG00000014177) #23	ric8a (ENSTNIG00000014178)	ANO1 (ENSTNIG00000004771)	lrp5 (ENSTNIG00000004770) #22	KLHL25 (ENSTNIG00000004769)	ENSTNIG00000004768	zc3h18 (ENSTNIG00000004767)	agtrap (ENSTNIG00000006241)	PANK4 (ENSTNIG00000006240)	ENSTNIG00000006239	ENSTNIG00000006238	zpr1 (ENSTNIG00000001378)	zpr1 (ENSTNIG00000003757)	rpl22 (ENSTNIG00000003756)	ARHGEF10L (ENSTNIG00000012205)	dhrs3b (ENSTNIG00000012204)	ENSTNIG00000012203	ephb2b (ENSTNIG00000012202)	LACTBL1 (ENSTNIG00000012201)
Eupecaria_A	ANCESTRAL SPECIES	7															ENSGT00940000170837	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000153377.B #21	ENSGT01100000263627	ENSGT00940000159189	ENSGT00390000009899.a.d #23	ENSGT00390000014700.b.a.a	ENSGT00940000155112.A.c	ENSGT00940000156672.o.a	ENSGT00940000153717.b.g	ENSGT00390000005430	ENSGT00940000155391.a.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	3172																ENSLBEG00000013341 #22
Ballan wrasse	MODERN SPECIES	1183																lrp5 (ENSLBEG00000006596) #22	ENSLBEG00000006576
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000161262.b	ENSGT00390000013899.b	ENSGT00940000157182.g.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Perciformes	ANCESTRAL SPECIES	28	ENSGT00940000164605	ENSGT00390000013269	ENSGT00950000182939.a.b.b	ENSGT00940000157182.g.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Cottioidei	ANCESTRAL SPECIES	32	ENSGT00940000158841	ENSGT00390000015057	ENSGT00960000187029	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248783	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Lumpfish	MODERN SPECIES	21	ENSCLMG00005002922	znf276 (ENSCLMG00005002953)	vps9d1 (ENSCLMG00005003002)	ENSCLMG00005003110	ENSCLMG00005003113	pdf (ENSCLMG00005003116)	tat (ENSCLMG00005003124)	zgc:56622 (ENSCLMG00005003127)	klhl36 (ENSCLMG00005003133)	cotl1 (ENSCLMG00005003137)	meak7 (ENSCLMG00005003140)	plcg2 (ENSCLMG00005003172)	tmem170a (ENSCLMG00005003492)	ENSCLMG00005003494	ENSCLMG00005003495 #21	lrp5 (ENSCLMG00005003603) #22	CCND1 (ENSCLMG00005012750) #35	zgc:158868 (ENSCLMG00005012753)	bcar1 (ENSCLMG00005012755)	cfdp1 (ENSCLMG00005012757)	gal (ENSCLMG00005012758) #24	ENSCLMG00005012760	pard6a (ENSCLMG00005012761)	NTRK3 (ENSCLMG00005012762)	ENSCLMG00005012775	ENSCLMG00005012779	ENSCLMG00005012781	ENSCLMG00005012782	ska1 (ENSCLMG00005012783)
Perciformes_a	ANCESTRAL SPECIES	30	ENSGT00940000164605	ENSGT00390000013269	ENSGT00950000182939.a.b.b	ENSGT00940000157182.g.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Pike perch	MODERN SPECIES	67	ENSSLUG00000017933	ENSSLUG00000017931	ENSSLUG00000017753	ENSSLUG00000017744	POGK (ENSSLUG00000017738)	ripor1 (ENSSLUG00000017484)	ctcf (ENSSLUG00000017393)	ENSSLUG00000017377	carmil2 (ENSSLUG00000017354)	zgc:113625 (ENSSLUG00000017346)	ric8a (ENSSLUG00000017255)	ppp6r3 (ENSSLUG00000016881) #23	tmem170a (ENSSLUG00000016823)	ENSSLUG00000016818	ENSSLUG00000016815	lrp5 (ENSSLUG00000013018) #22	CCND1 (ENSSLUG00000012894) #35	zgc:158868 (ENSSLUG00000012885)	bcar1 (ENSSLUG00000012881)	cfdp1 (ENSSLUG00000012876)	gal (ENSSLUG00000012861) #24	ENSSLUG00000012851	ENSSLUG00000012845	ENSSLUG00000012841	ENSSLUG00000012835	ENSSLUG00000012827	ENSSLUG00000012819	ENSSLUG00000012788	ENSSLUG00000012767	ENSSLUG00000012758	ENSSLUG00000012749
Channel bull blenny	MODERN SPECIES	20	anpeplb (ENSCGOG00000009810)	si:dkey-12e7.1 (ENSCGOG00000009918)	chka (ENSCGOG00000009935)	ANO1 (ENSCGOG00000010581)	ENSCGOG00000012139	ENSCGOG00000012142	ENSCGOG00000012167	ripor1 (ENSCGOG00000012180)	carmil2 (ENSCGOG00000012360)	ENSCGOG00000012365	slc12a3 (ENSCGOG00000012366)	ric8a (ENSCGOG00000012373)	ENSCGOG00000012429	ppp6r3 (ENSCGOG00000012430) #23	ENSCGOG00000012433	lrp5 (ENSCGOG00000012460) #22	CCND1 (ENSCGOG00000013654) #35	zgc:158868 (ENSCGOG00000013655)	bcar1 (ENSCGOG00000013656)	cfdp1 (ENSCGOG00000013658)	gal (ENSCGOG00000013660) #24	pard6a (ENSCGOG00000013672)	NTRK3 (ENSCGOG00000013680)	ENSCGOG00000013720	ska1 (ENSCGOG00000013722)	ENSCGOG00000013725	ENSCGOG00000013728	ENSCGOG00000013733	ENSCGOG00000013739	KLHL25 (ENSCGOG00000013747)	mical2b (ENSCGOG00000013829)
Eupecaria_C	ANCESTRAL SPECIES	29																ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000153377.B #21	ENSGT01100000263627	ENSGT00940000159189	ENSGT00390000009899.a.d #23	ENSGT00390000014700.b.a.a	ENSGT00940000155112.A.c	ENSGT00940000156672.o.a	ENSGT00940000153717.b.g	ENSGT00390000005430	ENSGT00940000155391.a.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	36														ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00940000159189	ENSGT00390000009899.a.d #23	ENSGT00390000014700.b.a.a	ENSGT00940000155112.A.c	ENSGT00940000156672.o.a	ENSGT00940000153717.b.g	ENSGT00390000005430	ENSGT00940000155391.a.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000157182.g.a	ENSGT00390000013899.b
European seabass	MODERN SPECIES	19	ENSDLAG00005031021	ENSDLAG00005005136	ENSDLAG00005005139	ENSDLAG00005005243	ENSDLAG00005026515	ENSDLAG00005008609	ENSDLAG00005011483	ENSDLAG00005034975	ripor1 (ENSDLAG00005009217)	ENSDLAG00005009429	carmil2 (ENSDLAG00005009458)	ENSDLAG00005027262	ppp6r3 (ENSDLAG00005009527) #23	ENSDLAG00005027123	ENSDLAG00005021727 #21	ENSDLAG00005005586 #22	ENSDLAG00005002566	ENSDLAG00005011302 #35	ENSDLAG00005029008	ENSDLAG00005027769	ENSDLAG00005011271	ENSDLAG00005010235	gal (ENSDLAG00005010216) #24	ENSDLAG00005010209	ENSDLAG00005010167	ENSDLAG00005029047	ENSDLAG00005032436	NTRK3 (ENSDLAG00005010055)	ENSDLAG00005031610	ENSDLAG00005032281	ENSDLAG00005032231
Large yellow croaker	MODERN SPECIES	127															ENSLCRG00005013421	lrp5 (ENSLCRG00005009329) #22	ENSLCRG00005009302
Gilthead seabream	MODERN SPECIES	22	ENSSAUG00010022193	kiaa0513 (ENSSAUG00010022194)	ces3 (ENSSAUG00010022197)	zfpm1 (ENSSAUG00010022200)	ENSSAUG00010022201	trhr2 (ENSSAUG00010022202)	ENSSAUG00010022204	ENSSAUG00010022206	zc3h18 (ENSSAUG00010022208)	utp4 (ENSSAUG00010022210)	ENSSAUG00010022211	chtf8 (ENSSAUG00010022212)	TANGO6 (ENSSAUG00010022213)	ENSSAUG00010022215 #21	ENSSAUG00010022217	lrp5 (ENSSAUG00010022247) #22	CCND1 (ENSSAUG00010023869) #35	zgc:158868 (ENSSAUG00010023872)	bcar1 (ENSSAUG00010023876)	ENSSAUG00010023878	gal (ENSSAUG00010001192) #24	ENSSAUG00010001199	pard6a (ENSSAUG00010001203)
Ovalentaria	ANCESTRAL SPECIES	34					ENSGT00940000157182.g.a	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Ovalentaria_B	ANCESTRAL SPECIES	53				ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Cichlidae	ANCESTRAL SPECIES	72	ENSGT00950000182983.B.b	ENSGT00940000163363	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000157182.g.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00730000111190	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000165785	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00730000111190	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000157182.g.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00730000111190	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938
Burton s mouthbrooder	MODERN SPECIES	427	ANO1 (ENSHBUG00000004961)	zgc:158868 (ENSHBUG00000004976)	bcar1 (ENSHBUG00000005041)	ENSHBUG00000005057	CHST1 (ENSHBUG00000005078)	ENSHBUG00000005120	ENSHBUG00000005133	ripor1 (ENSHBUG00000005258)	ctcf (ENSHBUG00000005300)	carmil2 (ENSHBUG00000005370)	ric8a (ENSHBUG00000005440)	ppp6r3 (ENSHBUG00000005469) #23	tmem170a (ENSHBUG00000005485)	ENSHBUG00000005495	ENSHBUG00000005506	lrp5 (ENSHBUG00000005660) #22	CCND1 (ENSHBUG00000005679) #35	PRR5L (ENSHBUG00000005691)	commd9 (ENSHBUG00000005699)	cart3 (ENSHBUG00000005716)	zgc:114188 (ENSHBUG00000005728)	zgc:193812 (ENSHBUG00000005746)	ENSHBUG00000005768
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000157182.g.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00730000111190	ENSGT00940000170707.b	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938
P. nyererei	MODERN SPECIES	503	zgc:158868 (ENSPNYG00000018849)	bcar1 (ENSPNYG00000018808)	ENSPNYG00000018778	CHST1 (ENSPNYG00000018759)	ENSPNYG00000018748	ENSPNYG00000018726	ENSPNYG00000018716	ripor1 (ENSPNYG00000018637)	ctcf (ENSPNYG00000018607)	carmil2 (ENSPNYG00000018519)	ric8a (ENSPNYG00000018320)	ppp6r3 (ENSPNYG00000018285) #23	tmem170a (ENSPNYG00000018267)	ENSPNYG00000018256	ENSPNYG00000018236	lrp5 (ENSPNYG00000018131) #22	CCND1 (ENSPNYG00000017992) #35	PRR5L (ENSPNYG00000017964)	COMMD9 (ENSPNYG00000017898)	zgc:114188 (ENSPNYG00000017858)	cart3 (ENSPNYG00000017849)	zgc:193812 (ENSPNYG00000017826)	ENSPNYG00000017785	ANPEP (ENSPNYG00000017646)	anpepb.1 (ENSPNYG00000017288)	zc3h18 (ENSPNYG00000017186)	ENSPNYG00000017147	utp4 (ENSPNYG00000017123)	chtf8 (ENSPNYG00000017105)	has3 (ENSPNYG00000017020)	TANGO6 (ENSPNYG00000016980)
Haplochromini_B	ANCESTRAL SPECIES	20	ENSGT00940000157182.g.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000157816.a.a #35	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00730000111190	ENSGT00940000170707.b	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938
Eastern happy	MODERN SPECIES	19	ENSACLG00000015284	CHST1 (ENSACLG00000015312)	ENSACLG00000015360	ENSACLG00000015426	ENSACLG00000015477	ripor1 (ENSACLG00000015504)	ctcf (ENSACLG00000015731)	carmil2 (ENSACLG00000015775)	ric8a (ENSACLG00000015894)	ppp6r3 (ENSACLG00000015972) #23	tmem170a (ENSACLG00000016088)	ENSACLG00000016109	ENSACLG00000016116	ENSACLG00000016130	ENSACLG00000016146 #21	lrp5 (ENSACLG00000016173) #22	CCND1 (ENSACLG00000016341) #35	PRR5L (ENSACLG00000016367)	commd9 (ENSACLG00000016394)	zgc:114188 (ENSACLG00000016484)	cart3 (ENSACLG00000016566)	zgc:193812 (ENSACLG00000016583)	ENSACLG00000016602	ANPEP (ENSACLG00000016717)	anpepb.1 (ENSACLG00000017196)	zc3h18 (ENSACLG00000017260)	ENSACLG00000017316	utp4 (ENSACLG00000017341)	chtf8 (ENSACLG00000017377)	has3 (ENSACLG00000017465)	TANGO6 (ENSACLG00000017485)
Zebra mbuna	MODERN SPECIES	1110	bcar1 (ENSMZEG00005022717)	ENSMZEG00005022720	CHST1 (ENSMZEG00005022721)	ENSMZEG00005022725	ENSMZEG00005022727	ENSMZEG00005022731	ripor1 (ENSMZEG00005022734)	ctcf (ENSMZEG00005022737)	carmil2 (ENSMZEG00005022744)	ric8a (ENSMZEG00005022749)	ppp6r3 (ENSMZEG00005022754) #23	tmem170a (ENSMZEG00005022757)	ENSMZEG00005022760	ENSMZEG00005022761 #21	ENSMZEG00005022762	lrp5 (ENSMZEG00005022764) #22	CCND1 (ENSMZEG00005022773) #35	commd9 (ENSMZEG00005022782)	zgc:114188 (ENSMZEG00005022785)	cart3 (ENSMZEG00005022793)	zgc:193812 (ENSMZEG00005022794)	aass (ENSMZEG00005022798)	ENSMZEG00005022812	dnaaf4 (ENSMZEG00005022822)	ENSMZEG00005022829	ckap5 (ENSMZEG00005022836)	cstpp1 (ENSMZEG00005022844)	ENSMZEG00005022847	cry2 (ENSMZEG00005022850)	ENSMZEG00005022852	TANGO6 (ENSMZEG00005022854)
Lyretail cichlid	MODERN SPECIES	293	ENSNBRG00000011575	bcar1 (ENSNBRG00000011533)	ENSNBRG00000011507	CHST1 (ENSNBRG00000011484)	ENSNBRG00000011464	ENSNBRG00000011435	ENSNBRG00000011424	ripor1 (ENSNBRG00000011411)	ctcf (ENSNBRG00000011394)	carmil2 (ENSNBRG00000011303)	ric8a (ENSNBRG00000011102)	ppp6r3 (ENSNBRG00000010904) #23	tmem170a (ENSNBRG00000010868)	ENSNBRG00000010863	ENSNBRG00000010858 #21	lrp5 (ENSNBRG00000010783) #22	CCND1 (ENSNBRG00000010664) #35	PRR5L (ENSNBRG00000010633)	commd9 (ENSNBRG00000010620)	zgc:114188 (ENSNBRG00000010579)	cart3 (ENSNBRG00000010561)	zgc:193812 (ENSNBRG00000010542)	ENSNBRG00000010500	ANPEP (ENSNBRG00000010175)	anpepb.1 (ENSNBRG00000009985)	zc3h18 (ENSNBRG00000009931)	ENSNBRG00000009917	utp4 (ENSNBRG00000009785)	chtf8 (ENSNBRG00000009772)	has3 (ENSNBRG00000009763)	TANGO6 (ENSNBRG00000009725)
Nile tilapia	MODERN SPECIES	19	zgc:158868 (ENSONIG00000004065)	bcar1 (ENSONIG00000004066)	ENSONIG00000004069	ENSONIG00000030672	CHST1 (ENSONIG00000039191)	ENSONIG00000004074	ENSONIG00000031548	ripor1 (ENSONIG00000004084)	ctcf (ENSONIG00000004097)	carmil2 (ENSONIG00000030089)	ric8a (ENSONIG00000004103)	ppp6r3 (ENSONIG00000004106) #23	tmem170a (ENSONIG00000039755)	ENSONIG00000039463	ENSONIG00000028547 #21	lrp5 (ENSONIG00000004121) #22	CCND1 (ENSONIG00000004126) #35	PRR5L (ENSONIG00000004131)	commd9 (ENSONIG00000004136)	cart3 (ENSONIG00000035649)	zgc:193812 (ENSONIG00000004140)	ENSONIG00000004141	zgc:114188 (ENSONIG00000004138)	ANPEP (ENSONIG00000004148)	anpepb.1 (ENSONIG00000004164)	zc3h18 (ENSONIG00000004183)	ENSONIG00000004190	utp4 (ENSONIG00000004191)	chtf8 (ENSONIG00000041378)	has3 (ENSONIG00000004198)	TANGO6 (ENSONIG00000004199)
Midas cichlid	MODERN SPECIES	1256	ANO1 (ENSACIG00000018582)	bcar1 (ENSACIG00000018562)	cfdp1 (ENSACIG00000018553)	CHST1 (ENSACIG00000018539)	ENSACIG00000017830	ENSACIG00000017766	ripor1 (ENSACIG00000017608)	ctcf (ENSACIG00000017577)	carmil2 (ENSACIG00000017518)	ENSACIG00000017507	ric8a (ENSACIG00000017482)	ppp6r3 (ENSACIG00000017446) #23	si:ch73-130a3.4 (ENSACIG00000017428)	tmem170a (ENSACIG00000017419)	ENSACIG00000017412	lrp5 (ENSACIG00000017339) #22	CCND1 (ENSACIG00000017197) #35	PRR5L (ENSACIG00000017175)	commd9 (ENSACIG00000017148)	zgc:114188 (ENSACIG00000017108)	cart3 (ENSACIG00000017102)	ENSACIG00000017086	ENSACIG00000017061	ENSACIG00000017020
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000156574.C #22
Pomacentridae_A	ANCESTRAL SPECIES	165	ENSGT00550000075044	ENSGT00390000010852	ENSGT00940000167703	ENSGT00950000182983.B.b	ENSGT00940000154146.b.b.b.n	ENSGT00940000166216	ENSGT00940000160936	ENSGT00940000155645.i.a	ENSGT00950000183211.a.a.b	ENSGT00940000165046.a	ENSGT00390000009663 #24	ENSGT00390000018141	ENSGT00950000183008.a.b.o	ENSGT00950000183008.a.b.p	ENSGT00940000166017	ENSGT00940000156574.C #22
Amphiprion	ANCESTRAL SPECIES	208	ENSGT00940000155465.j	ENSGT00940000160513.b	ENSGT00550000075044	ENSGT00390000010852	ENSGT00940000167703	ENSGT00950000182983.B.b	ENSGT00940000154146.b.b.b.n	ENSGT00940000166216	ENSGT00940000160936	ENSGT00940000155645.i.a	ENSGT00950000183211.a.a.b	ENSGT00940000165046.a	ENSGT00390000009663 #24	ENSGT00390000018141	ENSGT00950000183008.a.b.p	ENSGT00940000156574.C #22
Orange clownfish	MODERN SPECIES	18	LRRN3 (ENSAPEG00000018924)	immp2l (ENSAPEG00000018890)	znf277 (ENSAPEG00000018688)	ENSAPEG00000018615	KLHL25 (ENSAPEG00000018584)	ENSAPEG00000018532	ska1 (ENSAPEG00000018470)	ENSAPEG00000018443	ENSAPEG00000018376	NTRK3 (ENSAPEG00000018302)	pard6a (ENSAPEG00000018193)	ENSAPEG00000018175	gal (ENSAPEG00000018157) #24	cfdp1 (ENSAPEG00000018117)	bcar1 (ENSAPEG00000018003)	lrp5 (ENSAPEG00000017845) #22	ENSAPEG00000017803	cbr1 (ENSAPEG00000017516)	grm8b (ENSAPEG00000017454)	pot1 (ENSAPEG00000017371)	ENSAPEG00000017340	GPR37 (ENSAPEG00000017332)	SPAM1 (ENSAPEG00000017286)	ENSAPEG00000017274	HYAL4 (ENSAPEG00000017263)	hyal6 (ENSAPEG00000017254)	ENSAPEG00000017239	wasla (ENSAPEG00000017207)	ENSAPEG00000017189	ENSAPEG00000017179	ASB15 (ENSAPEG00000017102)
Clown anemonefish	MODERN SPECIES	679											pard6a (ENSAOCG00000005897)	ENSAOCG00000005874	gal (ENSAOCG00000005852) #24	cfdp1 (ENSAOCG00000005826)	bcar1 (ENSAOCG00000005794)	lrp5 (ENSAOCG00000005739) #22	ENSAOCG00000005641
Spiny chromis	MODERN SPECIES	1106														bcar1 (ENSAPOG00000016117)	ENSAPOG00000016310	lrp5 (ENSAPOG00000016483) #22	senp3b (ENSAPOG00000000985)	eif4a1a (ENSAPOG00000016551)
Bicolor damselfish	MODERN SPECIES	607	lhx9 (ENSSPAG00000003508)	nek7 (ENSSPAG00000003534)	ENSSPAG00000003679	ABHD8 (ENSSPAG00000003745)	dda1 (ENSSPAG00000003756)	ANO8 (ENSSPAG00000003786)	gtpbp3 (ENSSPAG00000003839)	plvapb (ENSSPAG00000003866)	babam1 (ENSSPAG00000003879)	ENSSPAG00000003935	nr2f6b (ENSSPAG00000003957)	ENSSPAG00000003984	MFSD12 (ENSSPAG00000004012)	csnk1g2b (ENSSPAG00000004049)	zgc:101100 (ENSSPAG00000004139)	ENSSPAG00000004152 #22
Atherinomorphae	ANCESTRAL SPECIES	32			ENSGT00940000157182.g.a	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263924	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000163363	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000166216	ENSGT00390000008748.b.h	ENSGT00940000155465.j	ENSGT00940000164138	ENSGT01030000234534.B.a.b.a.a
Oryzias	ANCESTRAL SPECIES	71			ENSGT00940000157021	ENSGT00420000029847	ENSGT00390000009456	ENSGT00940000156469.a	ENSGT00940000164138	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263924	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00390000009663 #24	ENSGT00940000163363	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000166216	ENSGT00940000154617.B.d	ENSGT00390000008748.b.h	ENSGT00940000155465.j
Oryzias_b	ANCESTRAL SPECIES		ENSGT00390000017697.a	ENSGT00940000157021	ENSGT00420000029847	ENSGT00390000009456	ENSGT00940000156469.a	ENSGT00940000164138	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263924	ENSGT00940000170837	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00390000009663 #24	ENSGT00940000163363	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000166216	ENSGT00940000154617.B.d	ENSGT00390000008748.b.h	ENSGT00940000155465.j	ENSGT00390000005430	ENSGT00940000155391.a.a
Indian medaka	MODERN SPECIES	15	ciao2a (ENSOMEG00000021981)	ENSOMEG00000021953	ANKRD27 (ENSOMEG00000021939)	ENSOMEG00000021862	faap24 (ENSOMEG00000021815)	SLC7A10 (ENSOMEG00000021797)	ENSOMEG00000021740	ripor1 (ENSOMEG00000021717)	ctcf (ENSOMEG00000021667)	carmil2 (ENSOMEG00000021597)	ric8a (ENSOMEG00000021545)	ppp6r3 (ENSOMEG00000021449) #23	tmem170a (ENSOMEG00000021292)	ENSOMEG00000021283	ENSOMEG00000021268	lrp5 (ENSOMEG00000021239) #22	zgc:158868 (ENSOMEG00000021143)	bcar1 (ENSOMEG00000021126)	ENSOMEG00000021106	gal (ENSOMEG00000021088) #24	ENSOMEG00000021024	pard6a (ENSOMEG00000021008)	NTRK3 (ENSOMEG00000000685)	ska1 (ENSOMEG00000020958)	ENSOMEG00000020929	ENSOMEG00000020901	ENSOMEG00000020889	ENSOMEG00000020854	ENSOMEG00000020830	ENSOMEG00000020776	ENSOMEG00000020736
Javanese ricefish	MODERN SPECIES	20	ENSOJAG00000018204	ANKRD27 (ENSOJAG00000018237)	ska1 (ENSOJAG00000019311)	ENSOJAG00000019333	faap24 (ENSOJAG00000019529)	SLC7A10 (ENSOJAG00000000115)	ENSOJAG00000000145	ripor1 (ENSOJAG00000000249)	ctcf (ENSOJAG00000000319)	carmil2 (ENSOJAG00000000346)	ric8a (ENSOJAG00000000381)	ppp6r3 (ENSOJAG00000000517) #23	tmem170a (ENSOJAG00000000684)	ENSOJAG00000000691	ENSOJAG00000000699 #21	lrp5 (ENSOJAG00000000774) #22	zgc:158868 (ENSOJAG00000000923)	bcar1 (ENSOJAG00000000933)	ENSOJAG00000000940	gal (ENSOJAG00000000949) #24	ENSOJAG00000000959	ENSOJAG00000000966	ENSOJAG00000000975	pard6a (ENSOJAG00000000984)	NTRK3 (ENSOJAG00000001012)	ENSOJAG00000001060	ENSOJAG00000001064	ska1 (ENSOJAG00000001070)	ENSOJAG00000001123	ENSOJAG00000001231	ENSOJAG00000001357
Oryzias_a	ANCESTRAL SPECIES	92			ENSGT00940000157021	ENSGT00420000029847	ENSGT00390000009456	ENSGT00940000156469.a	ENSGT00940000164138	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263924	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00390000009663 #24	ENSGT00940000163363	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000166216	ENSGT00940000154617.B.d	ENSGT00390000008748.b.h.a	ENSGT00940000155465.j	ENSGT00940000156088.c.b	ENSGT00940000157033.h	ENSGT00390000000972	ENSGT00940000154222.c.c
Japanese Medaka HdrR	MODERN SPECIES	20	ENSORLG00000000155	slc13a1 (ENSORLG00000000145)	ANKRD27 (ENSORLG00000018302)	ENSORLG00000027859	faap24 (ENSORLG00000025560)	ENSORLG00000018320	ENSORLG00000018329	ripor1 (ENSORLG00000018344)	ENSORLG00000018357	carmil2 (ENSORLG00000018366)	ric8a (ENSORLG00000018382)	ppp6r3 (ENSORLG00000018456) #23	tmem170a (ENSORLG00000030172)	ENSORLG00000018483	ENSORLG00000024142 #21	lrp5 (ENSORLG00000018545) #22	zgc:158868 (ENSORLG00000018559)	ENSORLG00000025444	bcar1 (ENSORLG00000018585)	ENSORLG00000018612	gal (ENSORLG00000018643) #24	ENSORLG00000018662	pard6a (ENSORLG00000018677)	ENSORLG00000018691	ENSORLG00000027870	ska1 (ENSORLG00000018727)	ENSORLG00000018774	ENSORLG00000025739	ENSORLG00000018803	ENSORLG00000024456	ENSORLG00000018881
Chinese medaka	MODERN SPECIES	293																ENSOSIG00000017073 #22
Cyprinodontiformes	ANCESTRAL SPECIES	34			ENSGT00940000157182.g.a	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263924	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000163363	ENSGT00940000168375	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000166216	ENSGT00390000008748.b.h	ENSGT00940000164099.a.b	ENSGT00940000155465.j	ENSGT00940000164138	ENSGT01030000234534.B.a.b.a.a
Aplocheiloidei	ANCESTRAL SPECIES	167					ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a.f	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263924	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000156574.C #22	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00950000183211.a.a.b
Mangrove rivulus	MODERN SPECIES	210								ripor1 (ENSKMAG00000008667)	ctcf (ENSKMAG00000008711)	carmil2 (ENSKMAG00000008806)	ric8a (ENSKMAG00000008904)	ppp6r3 (ENSKMAG00000008983) #23	tmem170a (ENSKMAG00000009126)	ENSKMAG00000009141	ENSKMAG00000009158	lrp5 (ENSKMAG00000009188) #22	ENSKMAG00000009315	bcar1 (ENSKMAG00000009364)	cfdp1 (ENSKMAG00000009399)
Turquoise killifish	MODERN SPECIES	1623	ENSNFUG00015004909	SYT8 (ENSNFUG00015004914)	GRM8 (ENSNFUG00015005037)	ENSNFUG00015005496	pot1 (ENSNFUG00015005521)	CR759921.2 (ENSNFUG00015005669)	SPAM1 (ENSNFUG00015005670)	HYAL4 (ENSNFUG00015005678)	hyal6 (ENSNFUG00015005688)	WASLA (ENSNFUG00015005698)	ENSNFUG00015005712	ENSNFUG00015005718	ENSNFUG00015005736	OLA.8940 (ENSNFUG00015005742)	C25H11ORF24 (ENSNFUG00015005745)	LRP5 (ENSNFUG00015005904) #22	BCAR1 (ENSNFUG00015008030)	RLTPR (ENSNFUG00015008042)	gal (ENSNFUG00015008052) #24	PARD6A (ENSNFUG00015008058)	fundc1 (ENSNFUG00015008066)	NDP (ENSNFUG00015008076)	MAO (ENSNFUG00015008091)	ENSNFUG00015008117	ENSNFUG00015008121	TNFSF11 (ENSNFUG00015008126)	AKAP11 (ENSNFUG00015008132)	ENSNFUG00015008135	ENSNFUG00015008139	ENSNFUG00015008142	ENSNFUG00015008288
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00940000159477	ENSGT00390000013249	ENSGT00940000155529.A	ENSGT00940000157182.g.a	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263924	ENSGT00940000170837	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000163363	ENSGT00940000168375	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000166216	ENSGT00390000008748.b.h	ENSGT00940000164099.a.b	ENSGT01060000250775	ENSGT00940000155465.j	ENSGT00940000164138
Poeciliinae	ANCESTRAL SPECIES	43	ENSGT00390000013249	ENSGT00940000155529.A	ENSGT00940000157182.g.a	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c.d	ENSGT00940000155112.A.c.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263924	ENSGT00940000170837	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000163363	ENSGT00940000168375	ENSGT00940000165046.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000166216	ENSGT00390000008748.b.h	ENSGT01060000250775	ENSGT00940000155465.j.a	ENSGT00940000164138	ENSGT01030000234534.B.a.b.a.a
Poecilia	ANCESTRAL SPECIES	65	ENSGT00390000013249	ENSGT00940000155529.A	ENSGT00940000157182.g.a	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c.d	ENSGT00940000155112.A.c.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263924	ENSGT00940000170837	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663 #24	ENSGT00940000163363	ENSGT00940000168375	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000166216	ENSGT00390000008748.b.h	ENSGT01060000250775	ENSGT00940000155465.j.a	ENSGT00940000164138	ENSGT01030000234534.B.a.b.a.a
NAME_6	ANCESTRAL SPECIES	411										ENSGT00940000155112.A.c.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d #23	ENSGT00940000159189	ENSGT01100000263924	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000166017
Sailfin molly	MODERN SPECIES	2586															ENSPLAG00000008838 #21	ENSPLAG00000008879 #22
Amazon molly	MODERN SPECIES	860											ENSPFOG00000002830	ric8a (ENSPFOG00000002380)	ppp6r3 (ENSPFOG00000002046) #23	tmem170a (ENSPFOG00000001965)	ENSPFOG00000022743 #21	lrp5 (ENSPFOG00000001314) #22	ENSPFOG00000023460
Guppy	MODERN SPECIES	458	CADPS2 (ENSPREG00000007623)	fezf1 (ENSPREG00000007572)	aass (ENSPREG00000007411)	PTPRZ1 (ENSPREG00000007262)	ANO1 (ENSPREG00000007191)	ENSPREG00000007154	ENSPREG00000007142	ripor1 (ENSPREG00000007095)	ctcf (ENSPREG00000007042)	ENSPREG00000007003	ric8a (ENSPREG00000006957)	ppp6r3 (ENSPREG00000006795) #23	tmem170a (ENSPREG00000006737)	ENSPREG00000006721	ENSPREG00000006700	lrp5 (ENSPREG00000006550) #22	bcar1 (ENSPREG00000006436)	cfdp1 (ENSPREG00000006417)	gal (ENSPREG00000006400) #24	pard6a (ENSPREG00000006370)	NTRK3 (ENSPREG00000006328)	ENSPREG00000006309	ENSPREG00000006297	ENSPREG00000006282	ENSPREG00000006265	ENSPREG00000006245	ENSPREG00000006195	ENSPREG00000006172	PPIP5K1 (ENSPREG00000006124)	ENSPREG00000006091	hapln3 (ENSPREG00000006070)
Platyfish	MODERN SPECIES	11					ANO1 (ENSXMAG00000016443)	ENSXMAG00000016421	ENSXMAG00000025586	ripor1 (ENSXMAG00000016390)	ctcf (ENSXMAG00000016342)	carmil2 (ENSXMAG00000016328)	ric8a (ENSXMAG00000016293)	ppp6r3 (ENSXMAG00000016259) #23	tmem170a (ENSXMAG00000026093)	ENSXMAG00000027585	ENSXMAG00000016233	lrp5 (ENSXMAG00000016162) #22	zgc:158868 (ENSXMAG00000016149)	bcar1 (ENSXMAG00000020876)	ENSXMAG00000016131	gal (ENSXMAG00000016121) #24	ENSXMAG00000021748	pard6a (ENSXMAG00000016111)	NTRK3 (ENSXMAG00000016085)	ENSXMAG00000026565	ENSXMAG00000016066	ENSXMAG00000023693	ENSXMAG00000007747	ENSXMAG00000009578	ENSXMAG00000028310	ENSXMAG00000009573	ENSXMAG00000028663
NAME_4	ANCESTRAL SPECIES	440															ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141
Sheepshead minnow	MODERN SPECIES	756															ENSCVAG00000007787 #21	lrp5 (ENSCVAG00000007780) #22	ENSCVAG00000007716	bcar1 (ENSCVAG00000007708)	cfdp1 (ENSCVAG00000007671)	ENSCVAG00000007666	ENSCVAG00000007660	ENSCVAG00000007646	ENSCVAG00000007627	ENSCVAG00000007617	ENSCVAG00000007609
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	2373	ENSFHEG00000012052	tspan12 (ENSFHEG00000012042)	ing3 (ENSFHEG00000012033)	ENSFHEG00000011962	wnt16 (ENSFHEG00000011958)	ENSFHEG00000011953	ENSFHEG00000011925	ovch1 (ENSFHEG00000011871)	ENSFHEG00000011857	FLNC (ENSFHEG00000011850)	socs2 (ENSFHEG00000011710)	cradd (ENSFHEG00000011703)	PTPRO (ENSFHEG00000011691)	C11orf98 (ENSFHEG00000011600)	ENSFHEG00000011576	ENSFHEG00000011562 #22	lrp6 (ENSFHEG00000011540)	tbk1 (ENSFHEG00000011458)	gpr19 (ENSFHEG00000011211)	crebl2 (ENSFHEG00000011204)	dusp16 (ENSFHEG00000011183)	eps8a (ENSFHEG00000011150)	ENSFHEG00000011028	abcc9 (ENSFHEG00000010958)	kcnj8 (ENSFHEG00000010619)	ENSFHEG00000010609	ECHDC3 (ENSFHEG00000010605)	usp6nl (ENSFHEG00000010575)	celf2 (ENSFHEG00000010537)
Mummichog	MODERN SPECIES	696																lrp5 (ENSFHEG00000013698) #22	bcar1 (ENSFHEG00000013613)
Otomorpha	ANCESTRAL SPECIES	86	ENSGT00940000155581.B	ENSGT00390000003374	ENSGT00940000158707.a.b	ENSGT00520000055637.A.b	ENSGT00940000154158	ENSGT00390000005224	ENSGT00940000155645.j	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.b.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00970000193421.C.b.i.a	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00990000204217	ENSGT00390000001802.ib	ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a #35	ENSGT00940000158825.d	ENSGT00940000157182.g.a	ENSGT00390000000972	ENSGT00940000157033.h	ENSGT00940000156088.c.b	ENSGT00390000001116
Clupeiformes	ANCESTRAL SPECIES	276															ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00990000204217	ENSGT00390000001802.ib	ENSGT00390000014700.b.a.a	ENSGT00390000001116	ENSGT00940000158841	ENSGT00390000007852	ENSGT00950000182808.b.b	ENSGT00950000182832.D.a	ENSGT00940000158102	ENSGT00940000157319	ENSGT00950000182863.A.a.a	ENSGT00390000003058.b.a.b
Atlantic herring	MODERN SPECIES	19	RFWD3 (ENSCHAG00000025392)	GLG1 (ENSCHAG00000025445)	ENSCHAG00000025588	ENSCHAG00000025590	urahb (ENSCHAG00000025592)	ENSCHAG00000025598	TAF3 (ENSCHAG00000025602)	SOX6 (ENSCHAG00000025617)	ENSCHAG00000025675	INSC (ENSCHAG00000025694)	calca (ENSCHAG00000025747)	psma1 (ENSCHAG00000025756)	ENSCHAG00000025770	ENSCHAG00000025775	ENSCHAG00000025777	lrp5 (ENSCHAG00000025848) #22	ppp6r3 (ENSCHAG00000026549) #23	gal (ENSCHAG00000000109) #24	zgc:110339 (ENSCHAG00000000118)	cox8b (ENSCHAG00000000131)	psmd13 (ENSCHAG00000000194)	ric8a (ENSCHAG00000000993)	TPCN2 (ENSCHAG00000001836) #31	CCND1 (ENSCHAG00000002200) #35	FGF4 (ENSCHAG00000002235)	fgf3 (ENSCHAG00000002250)	ANO1 (ENSCHAG00000002318)	shank2b (ENSCHAG00000004324)	endouc (ENSCHAG00000006479)	POLR3B (ENSCHAG00000006626)	rfx4 (ENSCHAG00000007091)
Denticle herring	MODERN SPECIES	17	ENSDCDG00000024446	ENSDCDG00000024526	shank2b (ENSDCDG00000024811)	ANO1 (ENSDCDG00000025413)	FGF4 (ENSDCDG00000027912)	ENSDCDG00000027916	CCND1 (ENSDCDG00000027917) #35	TPCN2 (ENSDCDG00000027921) #31	SNTB2 (ENSDCDG00000027925)	spire2 (ENSDCDG00000027926)	chst6 (ENSDCDG00000027927)	tmem231 (ENSDCDG00000027929)	GABARAPL2 (ENSDCDG00000027931)	adat1 (ENSDCDG00000027933)	ENSDCDG00000027937 #21	lrp5 (ENSDCDG00000028022) #22	ppp6r3 (ENSDCDG00000030501) #23	gal (ENSDCDG00000030531) #24	zgc:110339 (ENSDCDG00000030533)	ENSDCDG00000030535	psmd13 (ENSDCDG00000030543)	ric8a (ENSDCDG00000030608)	ZFC3H1 (ENSDCDG00000030732)	znf276 (ENSDCDG00000030737)	slc10a3 (ENSDCDG00000030741)	chmp1a (ENSDCDG00000030745)	cdk10 (ENSDCDG00000030754)	vps4a (ENSDCDG00000030770)	PTPRB (ENSDCDG00000030926)	frs2b (ENSDCDG00000031466)	nup160 (ENSDCDG00000031479)
Otophysi	ANCESTRAL SPECIES	19	ENSGT00940000158707.a.b	ENSGT00520000055637.A.b	ENSGT00940000154158	ENSGT00390000005224	ENSGT00940000155645.j	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.b.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00530000063712.a.a.o.b.b	ENSGT00940000154876.a.b.a	ENSGT00970000193421.C.b.i.a	ENSGT00940000154876.a.b.b	ENSGT00970000193421.C.b.i.b	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00990000204217	ENSGT00390000001802.ib	ENSGT00390000014700.b.a.a
Cyprinoidei	ANCESTRAL SPECIES	42	ENSGT00940000155581.B	ENSGT00390000003374	ENSGT00940000158707.a.b	ENSGT00520000055637.A.b	ENSGT00940000154158	ENSGT00390000005224	ENSGT00940000155645.j	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00970000193421.C.b.i.a	ENSGT00970000193421.C.b.i.b	ENSGT00940000153377.B #21	ENSGT00940000156574.C #22	ENSGT00390000009899.a.d #23	ENSGT00990000209978	ENSGT00390000009663.i #24	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00990000204217	ENSGT00390000001802.ib	ENSGT00390000014700.b.a.a	ENSGT00940000159310	ENSGT00940000163759	ENSGT00940000157405.c.a	ENSGT00940000175068	ENSGT00390000012559	ENSGT00390000008679	ENSGT00940000175024
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	57	ENSGT00520000055637.A.b.yb	ENSGT00940000154158.i	ENSGT00390000005224.r	ENSGT00940000155645.j.c	ENSGT00940000160936.d	ENSGT00950000182983.B.b.d	ENSGT00940000154146.b.a.w.b	ENSGT00950000182940.b.a.a.g.a.a	ENSGT00530000063712.a.a.o.b.a.b.a	ENSGT00530000063712.a.a.o.a.l.a	ENSGT01100000263475.f.a.e.b.b	ENSGT01100000263475.f.a.e.b.a.a.a	ENSGT00940000154876.a.b.a.a	ENSGT00970000193421.C.b.i.b	ENSGT00940000153377.B.c #21	ENSGT00940000156574.C.u #22	ENSGT00390000009899.a.d.o #23	ENSGT00990000209978.a	ENSGT00390000009663.i.a.a #24	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00990000204217.b	ENSGT00390000001802.ib.a	ENSGT00390000014700.b.a.a.a	ENSGT00940000159310.a	ENSGT00940000157405.c.a.a	ENSGT00940000175068.b	ENSGT00940000175068.a.a	ENSGT00390000012559.j	ENSGT00390000008679.e	ENSGT00940000175024
Cyprininae_a	ANCESTRAL SPECIES	106	ENSGT00940000158707.a.b.q.a	ENSGT00520000055637.A.b.yb	ENSGT00940000154158.i	ENSGT00390000005224.r	ENSGT00940000155645.j.c	ENSGT00940000160936.d	ENSGT00950000182983.B.b.d	ENSGT00940000154146.b.a.w.b	ENSGT00950000182940.b.a.a.g.a.a	ENSGT00530000063712.a.a.o.b.a.b.a	ENSGT00530000063712.a.a.o.a.l.a	ENSGT01100000263475.f.a.e.b.b.b	ENSGT00940000154876.a.b.a.a	ENSGT00970000193421.C.b.i.a	ENSGT00940000153377.B.c #21	ENSGT00940000156574.C.u #22	ENSGT00390000009899.a.d.o #23	ENSGT00990000209978.a	ENSGT00390000009663.i.a.a #24	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00990000204217.b	ENSGT00390000001802.ib.a	ENSGT00390000014700.b.a.a.a	ENSGT00940000159310.a	ENSGT00940000157405.c.a.a	ENSGT00940000175068.a.a	ENSGT00390000012559.j	ENSGT00390000008679.e	ENSGT00940000175024	ENSGT00940000164760.c.a
Golden-line barbel	MODERN SPECIES	37	jph3b (ENSSGRG00000037416)	map1lc3b (ENSSGRG00000037348)	det1 (ENSSGRG00000037339)	ntrk3a (ENSSGRG00000037329)	ENSSGRG00000037328	KLHL25 (ENSSGRG00000037327)	ENSSGRG00000037324	ENSSGRG00000037320	ENSSGRG00000036762	mespbb (ENSSGRG00000036756)	mespab (ENSSGRG00000036755)	mhc1lga (ENSSGRG00000036754)	anpepb.1 (ENSSGRG00000036753)	ap3s2 (ENSSGRG00000036752)	ENSSGRG00000036751 #21	lrp5 (ENSSGRG00000034220) #22	ppp6r3 (ENSSGRG00000034077) #23	ENSSGRG00000034069	gal (ENSSGRG00000034053) #24	zgc:110339 (ENSSGRG00000034048)	ENSSGRG00000034047 #25	cox8b (ENSSGRG00000034046)	psmd13 (ENSSGRG00000033391)	ric8a (ENSSGRG00000033287)	ehf (ENSSGRG00000033284)	ENSSGRG00000033282	lrrc4ca (ENSSGRG00000033278)	ENSSGRG00000033277	rag2 (ENSSGRG00000033276)	rag1 (ENSSGRG00000033275)	accs (ENSSGRG00000033252)
Common carp reference	MODERN SPECIES	37	ntrk3a (ENSCCRG00000009333)	KLHL25 (ENSCCRG00000071936)	AGBL1 (ENSCCRG00000030098)	ENSCCRG00000060604	ENSCCRG00000040010	mespbb (ENSCCRG00000030820)	mespab (ENSCCRG00000067084)	ENSCCRG00000030812	ENSCCRG00000040316	mespab (ENSCCRG00000040312)	ENSCCRG00000072483	ENSCCRG00000040302	anpepb.1 (ENSCCRG00000040290)	anpepb.1 (ENSCCRG00000040240)	ap3s2 (ENSCCRG00000040121)	lrp5 (ENSCCRG00000009797) #22	ppp6r3 (ENSCCRG00000010181) #23	ENSCCRG00000012535	gal (ENSCCRG00000012523) #24	zgc:110339 (ENSCCRG00000012538)	ENSCCRG00000012542 #25	psmd13 (ENSCCRG00000062974)	ric8a (ENSCCRG00000019044)	ehf (ENSCCRG00000004750)	lrrc4ca (ENSCCRG00000071157)	ENSCCRG00000012051	rag2 (ENSCCRG00000057934)	rag1 (ENSCCRG00000057160)	ENSCCRG00000056627	ENSCCRG00000012082	furinb (ENSCCRG00000013366)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	17	zgc:77158 (ENSCARG00000012991)	fgf6a (ENSCARG00000012982)	tigara (ENSCARG00000012969)	ccnd2a (ENSCARG00000012945)	KLHL25 (ENSCARG00000012939)	ENSCARG00000012921	ENSCARG00000012643	mespbb (ENSCARG00000012632)	mespab (ENSCARG00000012629)	mhc1lga (ENSCARG00000012625)	ENSCARG00000012617	ENSCARG00000012615	anpepb.1 (ENSCARG00000009860)	AP3S2 (ENSCARG00000009763)	ENSCARG00000009758 #21	lrp5 (ENSCARG00000006697) #22	ppp6r3 (ENSCARG00000006093) #23	ENSCARG00000006042	gal (ENSCARG00000006030) #24	zgc:110339 (ENSCARG00000006022)	ENSCARG00000006018 #25	cox8b (ENSCARG00000006008)	psmd13 (ENSCARG00000005621)	ric8a (ENSCARG00000005401)	ehf (ENSCARG00000005381)	ZNF319 (ENSCARG00000005375)	ccdc113 (ENSCARG00000005366)	CSNK2A2 (ENSCARG00000005338)	ENSCARG00000005328	ENSCARG00000005322	ENSCARG00000005316
Goldfish	MODERN SPECIES	2703																lrp5 (ENSCARG00000056436) #22
Cyprininae	ANCESTRAL SPECIES	145	ENSGT00940000154158.j	ENSGT00390000005224.q	ENSGT00940000155645.j.d	ENSGT00940000160936.c	ENSGT00950000182983.B.b.c	ENSGT00940000154146.b.a.w.a	ENSGT00950000182940.b.a.a.g.a.b	ENSGT00530000063712.a.a.o.b.a.b.b	ENSGT00530000063712.a.a.o.a.l.b	ENSGT01100000263475.f.a.e.b.a.b.a.a.a	ENSGT01100000263475.f.a.e.b.a.a.b	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a.b	ENSGT00970000193421.C.b.i.a	ENSGT00940000153377.B.d #21	ENSGT00940000156574.C.v #22	ENSGT00390000009899.a.d.p #23	ENSGT00990000209978.b	ENSGT00390000009663.i.a.b #24	ENSGT00990000204217.a	ENSGT00390000001802.ib.b	ENSGT00390000014700.b.a.a.b	ENSGT00940000159310.b	ENSGT00940000163759	ENSGT00940000157405.c.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	45	KLHL25 (ENSCARG00000028265)	ENSCARG00000028275	ENSCARG00000028286	ENSCARG00000028314	mespbb (ENSCARG00000028542)	mespab (ENSCARG00000028545)	ENSCARG00000028550	ENSCARG00000028556	ENSCARG00000028562	ENSCARG00000028572	ENSCARG00000028579	ANPEP (ENSCARG00000028590)	anpepb.1 (ENSCARG00000028644)	ap3s2 (ENSCARG00000031020)	ENSCARG00000031098 #21	lrp5 (ENSCARG00000031274) #22	ppp6r3 (ENSCARG00000038045) #23	ENSCARG00000039150	gal (ENSCARG00000039166) #24	cox8b (ENSCARG00000039204)	psmd13 (ENSCARG00000039234)	ric8a (ENSCARG00000039548)	ehf (ENSCARG00000039676)	lrrc4ca (ENSCARG00000039698)	ENSCARG00000039749	ENSCARG00000039756	tcp11l1 (ENSCARG00000039772)	hipk3a (ENSCARG00000039860)	ENSCARG00000041266	ENSCARG00000041329	syt9b (ENSCARG00000041809)
Goldfish	MODERN SPECIES	130																lrp5 (ENSCARG00000022249) #22	ppp6r3 (ENSCARG00000022344) #23
Cyprininae_a	ANCESTRAL SPECIES	73	ENSGT00940000154158.j	ENSGT00390000005224.q	ENSGT00940000155645.j.d	ENSGT00940000160936.c	ENSGT00950000182983.B.b.c	ENSGT00940000154146.b.a.w.a	ENSGT00950000182940.b.a.a.g.a.b	ENSGT00530000063712.a.a.o.b.a.b.b	ENSGT00530000063712.a.a.o.a.l.b	ENSGT01100000263475.f.a.e.b.a.b.a.a.a	ENSGT01100000263475.f.a.e.b.a.a.b	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a.b	ENSGT00970000193421.C.b.i.b	ENSGT00940000153377.B.d #21	ENSGT00940000156574.C.v #22	ENSGT00390000009899.a.d.p #23	ENSGT00990000209978.b	ENSGT00390000009663.i.a.b #24	ENSGT00990000204217.a	ENSGT00390000001802.ib.b	ENSGT00390000014700.b.a.a.b	ENSGT00940000159310.b	ENSGT00940000163759	ENSGT00940000157405.c.a.b
Common carp reference	MODERN SPECIES	33	ntrk3a (ENSCCRG00000072351)	ENSCCRG00000069030	KLHL25 (ENSCCRG00000037663)	ENSCCRG00000018929	ENSCCRG00000037242	ENSCCRG00000030842	mespbb (ENSCCRG00000077122)	ENSCCRG00000060820	mespab (ENSCCRG00000041730)	ENSCCRG00000041751	ENSCCRG00000054038	ENSCCRG00000041833	anpepb.1 (ENSCCRG00000056750)	ENSCCRG00000076136	ENSCCRG00000061403 #21	lrp5 (ENSCCRG00000041247) #22	ppp6r3 (ENSCCRG00000009623) #23	ENSCCRG00000009613	gal (ENSCCRG00000009596) #24	psmd13 (ENSCCRG00000019004)	cox8b (ENSCCRG00000009591)	ric8a (ENSCCRG00000009508)	ehf (ENSCCRG00000009504)	ENSCCRG00000059039	lrrc4ca (ENSCCRG00000078006)	ENSCCRG00000044210	rag2 (ENSCCRG00000076758)	rag1 (ENSCCRG00000069358)	ENSCCRG00000068937	furinb (ENSCCRG00000013554)	ENSCCRG00000016706
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	49	map1lc3b (ENSSGRG00000010720)	det1 (ENSSGRG00000010696)	ntrk3a (ENSSGRG00000010694)	ENSSGRG00000010691	KLHL25 (ENSSGRG00000010690)	ENSSGRG00000010687	ENSSGRG00000010685	ENSSGRG00000010337	mespbb (ENSSGRG00000010322)	mespab (ENSSGRG00000010319)	si:dkey-52p2.5 (ENSSGRG00000010317)	ENSSGRG00000010314	ANPEP (ENSSGRG00000007959)	AP3S2 (ENSSGRG00000007847)	ENSSGRG00000007842 #21	lrp5 (ENSSGRG00000007824) #22	lrp5 (ENSSGRG00000007819) #22	ppp6r3 (ENSSGRG00000007782) #23	zgc:110339 (ENSSGRG00000007778)	cox8b (ENSSGRG00000007765)	ENSSGRG00000007761	ric8a (ENSSGRG00000007694)	ehf (ENSSGRG00000007691)	carmil3 (ENSSGRG00000007688)	rem2 (ENSSGRG00000007681)	ENSSGRG00000007680	copb2 (ENSSGRG00000006200)	rbp2b (ENSSGRG00000006166)	rbp1.2 (ENSSGRG00000006162)	RBP1 (ENSSGRG00000006159)	NMNAT3 (ENSSGRG00000006155)
Golden-line barbel	MODERN SPECIES	49	det1 (ENSSGRG00000010696)	ntrk3a (ENSSGRG00000010694)	ENSSGRG00000010691	KLHL25 (ENSSGRG00000010690)	ENSSGRG00000010687	ENSSGRG00000010685	ENSSGRG00000010337	mespbb (ENSSGRG00000010322)	mespab (ENSSGRG00000010319)	si:dkey-52p2.5 (ENSSGRG00000010317)	ENSSGRG00000010314	ANPEP (ENSSGRG00000007959)	AP3S2 (ENSSGRG00000007847)	ENSSGRG00000007842 #21	lrp5 (ENSSGRG00000007824) #22	lrp5 (ENSSGRG00000007819) #22	ppp6r3 (ENSSGRG00000007782) #23	zgc:110339 (ENSSGRG00000007778)	cox8b (ENSSGRG00000007765)	ENSSGRG00000007761	ric8a (ENSSGRG00000007694)	ehf (ENSSGRG00000007691)	carmil3 (ENSSGRG00000007688)	rem2 (ENSSGRG00000007681)	ENSSGRG00000007680	copb2 (ENSSGRG00000006200)	rbp2b (ENSSGRG00000006166)	rbp1.2 (ENSSGRG00000006162)	RBP1 (ENSSGRG00000006159)	NMNAT3 (ENSSGRG00000006155)	clstn2a (ENSSGRG00000006002)
Zebrafish	MODERN SPECIES	17	mhc1lga (ENSDARG00000051713)	si:dkey-52p2.5 (ENSDARG00000096940)	mhc1lla (ENSDARG00000096977)	mhc1lda (ENSDARG00000023203)	mhc1lfa (ENSDARG00000051712)	ENSDARG00000051711	ENSDARG00000097352	mhc1lja (ENSDARG00000096830)	ENSDARG00000115781	ENSDARG00000051710	ENSDARG00000097275	ANPEP (ENSDARG00000097285)	anpepb.1 (ENSDARG00000103878)	ENSDARG00000089303 #21	ap3s2 (ENSDARG00000039882)	lrp5 (ENSDARG00000006921) #22	ppp6r3 (ENSDARG00000013379) #23	ENSDARG00000096915	ENSDARG00000097573	gal (ENSDARG00000091377) #24	zgc:110339 (ENSDARG00000046030)	ENSDARG00000097662	cox8b (ENSDARG00000097209)	psmd13 (ENSDARG00000016239)	ric8a (ENSDARG00000007247)	ehf (ENSDARG00000052115)	lrrc4ca (ENSDARG00000113411)	ENSDARG00000089139	rag2 (ENSDARG00000052121)	rag1 (ENSDARG00000052122)	ENSDARG00000097032
Characiphysae	DUPLICATION
Characiphysae	ANCESTRAL SPECIES																	ENSGT00940000156574.C.w #22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00940000156574.C.w #22
Characoidei	ANCESTRAL SPECIES																	ENSGT00940000156574.C.w #22
Red-bellied piranha	MODERN SPECIES	499									rad51ap1 (ENSPNAG00000027473)	DYRK4 (ENSPNAG00000027542)	GALNT8 (ENSPNAG00000028019)	ADA2 (ENSPNAG00000028047)	atp6v1e1b (ENSPNAG00000028097)	ENSPNAG00000028110	ccdc167 (ENSPNAG00000028128)	ENSPNAG00000006559 #22	lrp6 (ENSPNAG00000004316)	dusp16 (ENSPNAG00000028229)	crebl2 (ENSPNAG00000004933)	gpr19 (ENSPNAG00000006330)	tbk1 (ENSPNAG00000004340)	eps8a (ENSPNAG00000004351)	PTPRO (ENSPNAG00000006837)	si:cabz01085950.1 (ENSPNAG00000028497)
Characiphysae	DUPLICATION
Characiphysae	ANCESTRAL SPECIES																	ENSGT00940000156574.C.x.a #22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00940000156574.C.x.a #22
Electric eel	MODERN SPECIES	1563																ENSEEEG00000009667 #22
Characiphysae	ANCESTRAL SPECIES	44	ENSGT00940000158707.a.b	ENSGT00520000055637.A.b	ENSGT00940000154158	ENSGT00390000005224	ENSGT00940000155645.j	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.b.b.a.b	ENSGT00940000154146.b.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00530000063712.a.a.o.b.b	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00970000193421.C.b.i.b	ENSGT00940000153377.B #21	ENSGT00940000156574.C.x.b #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00990000204217	ENSGT00390000001802.ib	ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a #35	ENSGT00940000158825.d	ENSGT00940000157182.g.a.b
Channel catfish	MODERN SPECIES	27	psma1 (ENSIPUG00000007063)	Ric3 (ENSIPUG00000007114)	rpl27a (ENSIPUG00000007135)	FLNC (ENSIPUG00000007180)	ENSIPUG00000007283	ENSIPUG00000007297	ENSIPUG00000007314	ENSIPUG00000007336	Znf276 (ENSIPUG00000007391)	SLC10A3 (ENSIPUG00000007419)	chmp1a (ENSIPUG00000007424)	ENSIPUG00000007473	anpepb.1 (ENSIPUG00000007513)	ap3s2 (ENSIPUG00000007583)	ENSIPUG00000007627 #21	lrp5 (ENSIPUG00000007655) #22	ppp6r3 (ENSIPUG00000007824) #23	ric8a (ENSIPUG00000007920)	psmd13 (ENSIPUG00000007952)	cox8b (ENSIPUG00000008022)	ENSIPUG00000008036	gal (ENSIPUG00000008049) #24	ENSIPUG00000008069	nup160 (ENSIPUG00000008082)	FRS2 (ENSIPUG00000008229)	wwp2 (ENSIPUG00000008281)	adat1 (ENSIPUG00000008416)	gabarapl2 (ENSIPUG00000008449)	tmem231 (ENSIPUG00000008468)	chst6 (ENSIPUG00000008485)	spire2 (ENSIPUG00000008495)
Characiphysae_b	ANCESTRAL SPECIES	174				ENSGT00940000155645.j	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.b.b.a.b	ENSGT00940000154146.b.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00530000063712.a.a.o.b.b	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00970000193421.C.b.i.a	ENSGT00970000193421.C.b.i.b	ENSGT00940000153377.B #21	ENSGT00940000156574.C.x.b #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00990000204217	ENSGT00390000001802.ib	ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a #35	ENSGT00940000158825.d	ENSGT00940000157182.g.a.b
Electric eel	MODERN SPECIES	1186																lrp5 (ENSEEEG00000017816) #22	ppp6r3 (ENSEEEG00000017810) #23	gal (ENSEEEG00000017808) #24	ENSEEEG00000017807	cox8b (ENSEEEG00000017806)	psmd13 (ENSEEEG00000017265)
Characoidei	ANCESTRAL SPECIES	121				ENSGT00940000155645.j	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.b.b.a.b	ENSGT00940000154146.b.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00530000063712.a.a.o.b.b.a	ENSGT00530000063712.a.a.o.b.b.b	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00970000193421.C.b.i.a	ENSGT00940000153377.B #21	ENSGT00940000156574.C.x.b #22	ENSGT00390000009899.a.d #23	ENSGT00940000167440	ENSGT00390000009663 #24	ENSGT00940000165046.a	ENSGT00940000161379 #25	ENSGT00990000204217	ENSGT00390000001802.ib	ENSGT00390000014700.b.a.a	ENSGT00950000182939.b.b	ENSGT00390000001511	ENSGT00940000177879	ENSGT00940000156267.ob.b.b	ENSGT00550000074855	ENSGT00440000034107.a.f	ENSGT00390000005534.d
Red-bellied piranha	MODERN SPECIES	520													ENSPNAG00000013319	ENSPNAG00000002698	ENSPNAG00000002691	lrp5 (ENSPNAG00000013281) #22	ppp6r3 (ENSPNAG00000013224) #23	ENSPNAG00000002613	gal (ENSPNAG00000013177) #24	zgc:110339 (ENSPNAG00000013154)	ENSPNAG00000002569	cox8b (ENSPNAG00000002564)	psmd13 (ENSPNAG00000013099)	ric8a (ENSPNAG00000013043)	ENSPNAG00000013007	INSC (ENSPNAG00000012994)
Mexicana tetra	MODERN SPECIES	16	KLHL25 (ENSAMXG00000025580)	ENSAMXG00000041977	ENSAMXG00000032769	ENSAMXG00000036790	ENSAMXG00000042803	SV2B (ENSAMXG00000020811)	ENSAMXG00000038154	ENSAMXG00000040913	ENSAMXG00000030664	ENSAMXG00000031726	ANPEP (ENSAMXG00000038996)	anpepb.1 (ENSAMXG00000020798)	ap3s2 (ENSAMXG00000040985)	ENSAMXG00000042631	ENSAMXG00000034325 #21	lrp5 (ENSAMXG00000005136) #22	ppp6r3 (ENSAMXG00000042684) #23	gal (ENSAMXG00000004485) #24	zgc:110339 (ENSAMXG00000043837)	ENSAMXG00000037533 #25	cox8b (ENSAMXG00000034391)	psmd13 (ENSAMXG00000029954)	ric8a (ENSAMXG00000042873)	ENSAMXG00000004737	INSC (ENSAMXG00000020713)	calca (ENSAMXG00000040041)	psma1 (ENSAMXG00000015455)	ENSAMXG00000015490	RPL27A (ENSAMXG00000037897)	FLNC (ENSAMXG00000015567)	ENSAMXG00000043530
Elephant shark	MODERN SPECIES	1493	ptpmt1 (ENSCMIG00000015962)	ENSCMIG00000015960	ENSCMIG00000015958	ABTB2 (ENSCMIG00000015946)	nat10 (ENSCMIG00000015911)	caprin1b (ENSCMIG00000015810)	lmo2 (ENSCMIG00000015773)	ENSCMIG00000015761	mob2a (ENSCMIG00000015747)	BRSK2 (ENSCMIG00000015737)	tollip (ENSCMIG00000015722)	ppp6r3 (ENSCMIG00000015710) #23	CHKA (ENSCMIG00000015689)	kmt5b (ENSCMIG00000015669) #20	ENSCMIG00000015667	lrp5 (ENSCMIG00000015560) #22	ENSCMIG00000015496	adm (ENSCMIG00000015493)	SBF2 (ENSCMIG00000015228)	swap70b (ENSCMIG00000015023)	wee1 (ENSCMIG00000014969)	znf143b (ENSCMIG00000014938)	ipo7 (ENSCMIG00000014909)	tmem41b (ENSCMIG00000014883)	DENND5A (ENSCMIG00000014855)	ENSCMIG00000014841	scube2 (ENSCMIG00000014797)	NRIP3 (ENSCMIG00000014754)	tmem9b (ENSCMIG00000014752)	ENSCMIG00000014749	ENSCMIG00000014747
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000156574.C #22
Hagfish	MODERN SPECIES	504												syt9b (ENSEBUG00000003394)	ENSEBUG00000014956	hipk2 (ENSEBUG00000002902)	tbxas1 (ENSEBUG00000009344)	lrp5 (ENSEBUG00000010078) #22	ENSEBUG00000009510	PAX6 (ENSEBUG00000015684)	ENSEBUG00000000492	ENSEBUG00000012001	TEAD1 (ENSEBUG00000015798)	ENSEBUG00000002467	tefa (ENSEBUG00000003127)
Lamprey	MODERN SPECIES	945												ckap5 (ENSPMAG00000008554)	ENSPMAG00000008524	api5 (ENSPMAG00000008496)	ENSPMAG00000008484	ENSPMAG00000008463 #22
Ciona	ANCESTRAL SPECIES																	ENSGT00940000156574.C #22
Ciona savignyi	MODERN SPECIES	40	ENSCSAVG00000007390	ENSCSAVG00000007391	ENSCSAVG00000007398	ENSCSAVG00000007411	ENSCSAVG00000007427	ENSCSAVG00000007434	ENSCSAVG00000007437	ENSCSAVG00000007442	ENSCSAVG00000007457	ENSCSAVG00000007462	ENSCSAVG00000007468	ENSCSAVG00000007471	ENSCSAVG00000007474	ENSCSAVG00000007476	ENSCSAVG00000007480	ENSCSAVG00000007482 #22	ENSCSAVG00000007487	ENSCSAVG00000007490	ENSCSAVG00000007495	ENSCSAVG00000007496	ENSCSAVG00000007502	ENSCSAVG00000007510	ENSCSAVG00000007511	ENSCSAVG00000007516	ENSCSAVG00000007521	ENSCSAVG00000007569	ENSCSAVG00000007575	ENSCSAVG00000007624	ENSCSAVG00000007629	ENSCSAVG00000007806	ENSCSAVG00000007811
Ciona intestinalis	MODERN SPECIES	75	ENSCING00000023103	ENSCING00000023626	ENSCING00000022924	ENSCING00000004907	ENSCING00000019805	ENSCING00000020808	ENSCING00000004895	ENSCING00000023665	ENSCING00000004888	ENSCING00000022028	ENSCING00000014845	ENSCING00000022060 ##22	ENSCING00000023147	ENSCING00000024564 ##22	ENSCING00000022269 ##22	ENSCING00000015578 #22	ENSCING00000008753	ENSCING00000023812	ENSCING00000021975	ENSCING00000008762	ENSCING00000014774	ENSCING00000008760	ENSCING00000017480	ENSCING00000008759	ENSCING00000008758	ENSCING00000008757	ENSCING00000018463	ENSCING00000021966	ENSCING00000021398	zf(c3h)-14 (ENSCING00000023848)	ENSCING00000021142