Vertebrata	ANCESTRAL SPECIES	152																ENSGT00390000001504 #22	ENSGT00940000156710	ENSGT00940000159358
Gnathostomata	ANCESTRAL SPECIES	25	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00970000197371	ENSGT00940000155719.a	ENSGT00940000156630 #30	ENSGT00390000002316 #32
Euteleostomi	ANCESTRAL SPECIES	32	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00940000164592	ENSGT00940000164372	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00940000170353	ENSGT00390000001504 #22	ENSGT00940000158713 #23
Sarcopterygii	ANCESTRAL SPECIES	36	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00940000164592	ENSGT00940000164372	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00940000170353	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29
Tetrapoda	ANCESTRAL SPECIES		ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00940000164592	ENSGT00940000164372	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Amniota	ANCESTRAL SPECIES		ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00940000164592	ENSGT00940000164372	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Mammalia	ANCESTRAL SPECIES		ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00940000164592	ENSGT00940000164372	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Theria	ANCESTRAL SPECIES	1	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Eutheria	ANCESTRAL SPECIES	17	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00740000117041	ENSGT00940000162967 #36
Boreoeutheria	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00740000117041	ENSGT00940000162967 #36
Euarchontoglires	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Euarchontoglires_A	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Glires	ANCESTRAL SPECIES	22	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Rodentia	ANCESTRAL SPECIES	22	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Myomorpha	ANCESTRAL SPECIES	46	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Muroidea	ANCESTRAL SPECIES	68	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Muroidea_A	ANCESTRAL SPECIES	27	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.d #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Cricetidae	ANCESTRAL SPECIES	27	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.d #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Cricetidae_B	ANCESTRAL SPECIES	49	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.d #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Northern American deer mouse	MODERN SPECIES	15	Wasf3 (ENSPEMG00000011510) #7	ENSPEMG00000030961 #8	Gpr12 (ENSPEMG00000010665) #9	Usp12 (ENSPEMG00000008193) #10	Rpl21 (ENSPEMG00000006041) #11	Rasl11a (ENSPEMG00000004475) #12	Gtf3a (ENSPEMG00000003201) #13	Mtif3 (ENSPEMG00000000930) #14	Lnx2 (ENSPEMG00000008280) #15	Polr1d (ENSPEMG00000006336) #16	Gsx1 (ENSPEMG00000004992) #17	Pdx1 (ENSPEMG00000001176) #18	Cdx2 (ENSPEMG00000000632) #19	Urad (ENSPEMG00000025423) #20	Flt3 (ENSPEMG00000012278) #21	Pan3 (ENSPEMG00000008992) #22	Flt1 (ENSPEMG00000019000) #23	ENSPEMG00000014341 #24	Slc46a3 (ENSPEMG00000014019) #25	ENSPEMG00000024696 #26	Mtus2 (ENSPEMG00000011863) #27	Slc7a1 (ENSPEMG00000006808) #28	Ubl3 (ENSPEMG00000010779) #29	Katnal1 (ENSPEMG00000009164) #30	ENSPEMG00000000834 #31	Uspl1 (ENSPEMG00000003660) #32	Alox5ap (ENSPEMG00000000576) #33	Medag (ENSPEMG00000000331) #34	Tex26 (ENSPEMG00000019024) #35	Wdr95 (ENSPEMG00000016428) #36	Hsph1 (ENSPEMG00000009941) #37
Prairie vole	MODERN SPECIES	7	ENSMOCG00000017944	Gpr12 (ENSMOCG00000009890) #9	Usp12 (ENSMOCG00000001714) #10	Rpl21 (ENSMOCG00000003487) ##11	Rasl11a (ENSMOCG00000000626) #12	ENSMOCG00000017124	Gtf3a (ENSMOCG00000004408) #13	Mtif3 (ENSMOCG00000017226) #14	Lnx2 (ENSMOCG00000022088) #15	Polr1d (ENSMOCG00000021288) #16	Gsx1 (ENSMOCG00000002374) #17	Pdx1 (ENSMOCG00000007886) #18	Cdx2 (ENSMOCG00000010222) #19	Urad (ENSMOCG00000018154) #20	Flt3 (ENSMOCG00000015945) #21	Pan3 (ENSMOCG00000001443) #22	Flt1 (ENSMOCG00000019790) #23	ENSMOCG00000000648	Pomp (ENSMOCG00000006131) #24	Slc46a3 (ENSMOCG00000007090) #25	Mtus2 (ENSMOCG00000013900) #27	Slc7a1 (ENSMOCG00000022298) #28	Ubl3 (ENSMOCG00000012896) #29	Katnal1 (ENSMOCG00000013914) #30	ENSMOCG00000018161 ##31	ENSMOCG00000018612 #32	Alox5ap (ENSMOCG00000018258) #33	Medag (ENSMOCG00000012447) #34	Tex26 (ENSMOCG00000013830) #35	Wdr95 (ENSMOCG00000021942) #36	Hsph1 (ENSMOCG00000019013) #37
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.d #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00940000158948.b
Chinese hamster chok1gshd	MODERN SPECIES	130	Gpr12 (ENSCGRG00001003285) #9	ENSCGRG00001021742 #10	Rpl21 (ENSCGRG00001007602) #11	Rasl11a (ENSCGRG00001014752) #12	Gtf3a (ENSCGRG00001024969) #13	Mtif3 (ENSCGRG00001024612) #14	ENSCGRG00001024532	Lnx2 (ENSCGRG00001022751) #15	Polr1d (ENSCGRG00001021251) #16	Gsx1 (ENSCGRG00001017641) #17	Pdx1 (ENSCGRG00001024891) #18	Cdx2 (ENSCGRG00001024259) #19	Urad (ENSCGRG00001021146) #20	Flt3 (ENSCGRG00001010328) #21	ENSCGRG00001012489	Pan3 (ENSCGRG00001024986) #22	Flt1 (ENSCGRG00001000764) #23	Pomp (ENSCGRG00001000803) #24	Slc46a3 (ENSCGRG00001023870) #25	ENSCGRG00001001206	Mtus2 (ENSCGRG00001023648) #27	Slc7a1 (ENSCGRG00001019393) #28	Ubl3 (ENSCGRG00001002093) #29	Katnal1 (ENSCGRG00001024027) #30	ENSCGRG00001018342 #32	Alox5ap (ENSCGRG00001018470) #33	ENSCGRG00001025063	Medag (ENSCGRG00001024417) #34	Tex26 (ENSCGRG00001015836) #35	Wdr95 (ENSCGRG00001015579) #36	Hsph1 (ENSCGRG00001021270) #37
Golden Hamster	MODERN SPECIES	762	Rfc3 (ENSMAUG00000016464)	Gpr12 (ENSMAUG00000015064) #9	ENSMAUG00000010877	Usp12 (ENSMAUG00000010310) #10	ENSMAUG00000006957 #11	Rasl11a (ENSMAUG00000019356) #12	Gtf3a (ENSMAUG00000016253) #13	Mtif3 (ENSMAUG00000011167) #14	Lnx2 (ENSMAUG00000009457) #15	Polr1d (ENSMAUG00000001946) #16	Pdx1 (ENSMAUG00000021082) #18	Cdx2 (ENSMAUG00000020822) #19	Urad (ENSMAUG00000019946) #20	ENSMAUG00000001106	Flt3 (ENSMAUG00000011952) #21	Pan3 (ENSMAUG00000021155) #22	Flt1 (ENSMAUG00000006859) #23	Pomp (ENSMAUG00000006509) #24	ENSMAUG00000020285	ENSMAUG00000018323 #27	Slc7a1 (ENSMAUG00000000359) #28	Ubl3 (ENSMAUG00000016399) #29	Katnal1 (ENSMAUG00000007731) #30	ENSMAUG00000017646	ENSMAUG00000013736 #32	Alox5ap (ENSMAUG00000012262) #33	Medag (ENSMAUG00000009604) #34	Tex26 (ENSMAUG00000016345) #35	Wdr95 (ENSMAUG00000014604) #36	Hsph1 (ENSMAUG00000002443) #37	B3glct (ENSMAUG00000018787)
Murinae	ANCESTRAL SPECIES	28	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00960000191336	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Mus	ANCESTRAL SPECIES	17	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00960000191336	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00960000191336	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00960000191336	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.b.c.c.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00960000191336	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
spretus	MODERN SPECIES	14	Cdk8 (MGP_SPRETEiJ_G0029023)	Wasf3 (MGP_SPRETEiJ_G0029024) #7	Gpr12 (MGP_SPRETEiJ_G0029025) #9	Usp12 (MGP_SPRETEiJ_G0029026) #10	MGP_SPRETEiJ_G0029027 ##11	Rasl11a (MGP_SPRETEiJ_G0029028) #12	Gtf3a (MGP_SPRETEiJ_G0029029) #13	Mtif3 (MGP_SPRETEiJ_G0029030) #14	Lnx2 (MGP_SPRETEiJ_G0029031) #15	Polr1d (MGP_SPRETEiJ_G0029032) #16	Gsx1 (MGP_SPRETEiJ_G0029033) #17	Pdx1 (MGP_SPRETEiJ_G0029034) #18	Cdx2 (MGP_SPRETEiJ_G0029035) #19	Urad (MGP_SPRETEiJ_G0029036) #20	Flt3 (MGP_SPRETEiJ_G0029037) #21	Pan3 (MGP_SPRETEiJ_G0029038) #22	Flt1 (MGP_SPRETEiJ_G0029039) #23	Pomp (MGP_SPRETEiJ_G0029040) #24	Slc46a3 (MGP_SPRETEiJ_G0029041) #25	Mtus2 (MGP_SPRETEiJ_G0029042) #27	Slc7a1 (MGP_SPRETEiJ_G0029043) #28	Ubl3 (MGP_SPRETEiJ_G0029044) #29	MGP_SPRETEiJ_G0029045 #30	MGP_SPRETEiJ_G0029046 #30	MGP_SPRETEiJ_G0029047 #31	Uspl1 (MGP_SPRETEiJ_G0029048) #32	Alox5ap (MGP_SPRETEiJ_G0029049) #33	Medag (MGP_SPRETEiJ_G0029050) #34	Tex26 (MGP_SPRETEiJ_G0029051) #35	Wdr95 (MGP_SPRETEiJ_G0029052) #36	Hsph1 (MGP_SPRETEiJ_G0029053) #37
Steppe mouse	MODERN SPECIES	3364	Gpr12 (ENSMSIG00000024129) #9	ENSMSIG00000024119	Usp12 (ENSMSIG00000024096) #10	ENSMSIG00000024049 ##11	Rasl11a (ENSMSIG00000024039) #12	Gtf3a (ENSMSIG00000024026) #13	Mtif3 (ENSMSIG00000024005) #14	Lnx2 (ENSMSIG00000023999) #15	ENSMSIG00000023978 #16	Gsx1 (ENSMSIG00000023969) #17	Pdx1 (ENSMSIG00000023956) #18	Cdx2 (ENSMSIG00000023947) #19	ENSMSIG00000023941	ENSMSIG00000023930	Flt3 (ENSMSIG00000023851) #21	Pan3 (ENSMSIG00000023687) #22	Flt1 (ENSMSIG00000023642) #23	ENSMSIG00000023628	Pomp (ENSMSIG00000023598) #24	Slc46a3 (ENSMSIG00000023578) #25	Mtus2 (ENSMSIG00000023484) #27	Slc7a1 (ENSMSIG00000023421) #28	Ubl3 (ENSMSIG00000023402) #29	Katnal1 (ENSMSIG00000023377) #30	ENSMSIG00000023332 ##31	Uspl1 (ENSMSIG00000023285) #32	Alox5ap (ENSMSIG00000023243) #33	ENSMSIG00000023226	Medag (ENSMSIG00000023188) #34	Tex26 (ENSMSIG00000023128) #35	Wdr95 (ENSMSIG00000023065) #36
Mouse	MODERN SPECIES	14	Gm3409 (ENSMUSG00000096664)	Gm3415 (ENSMUSG00000095557)	Gpr12 (ENSMUSG00000041468) #9	Usp12 (ENSMUSG00000029640) #10	Rpl21 (ENSMUSG00000041453) ##11	Rasl11a (ENSMUSG00000029641) #12	Gtf3a (ENSMUSG00000016503) #13	Mtif3 (ENSMUSG00000016510) #14	Lnx2 (ENSMUSG00000016520) #15	Polr1d (ENSMUSG00000029642) #16	Gsx1 (ENSMUSG00000053129) #17	Pdx1 (ENSMUSG00000029644) #18	Cdx2 (ENSMUSG00000029646) #19	Urad (ENSMUSG00000075543) #20	Flt3 (ENSMUSG00000042817) #21	Pan3 (ENSMUSG00000029647) #22	Flt1 (ENSMUSG00000029648) #23	Pomp (ENSMUSG00000029649) #24	Slc46a3 (ENSMUSG00000029650) #25	Mtus2 (ENSMUSG00000029651) #27	Slc7a1 (ENSMUSG00000041313) #28	Ubl3 (ENSMUSG00000001687) #29	Katnal1 (ENSMUSG00000041298) #30	Hmgb1 (ENSMUSG00000066551) ##31	Uspl1 (ENSMUSG00000041264) #32	Alox5ap (ENSMUSG00000060063) #33	Medag (ENSMUSG00000029659) #34	Tex26 (ENSMUSG00000029660) #35	Wdr95 (ENSMUSG00000029658) #36	Hsph1 (ENSMUSG00000029657) #37	B3glct (ENSMUSG00000051950)
Ryukyu mouse	MODERN SPECIES	14	Cdk8 (MGP_CAROLIEiJ_G0028025)	Wasf3 (MGP_CAROLIEiJ_G0028026) #7	Gpr12 (MGP_CAROLIEiJ_G0028027) #9	Usp12 (MGP_CAROLIEiJ_G0028028) #10	Rpl21 (MGP_CAROLIEiJ_G0028029) ##11	Rasl11a (MGP_CAROLIEiJ_G0028030) #12	Gtf3a (MGP_CAROLIEiJ_G0028031) #13	Mtif3 (MGP_CAROLIEiJ_G0028032) #14	Lnx2 (MGP_CAROLIEiJ_G0028033) #15	Polr1d (MGP_CAROLIEiJ_G0028034) #16	Gsx1 (MGP_CAROLIEiJ_G0028035) #17	Pdx1 (MGP_CAROLIEiJ_G0028036) #18	Cdx2 (MGP_CAROLIEiJ_G0028037) #19	Urad (MGP_CAROLIEiJ_G0028038) #20	Flt3 (MGP_CAROLIEiJ_G0028039) #21	Pan3 (MGP_CAROLIEiJ_G0028040) #22	Flt1 (MGP_CAROLIEiJ_G0028041) #23	Pomp (MGP_CAROLIEiJ_G0028042) #24	Slc46a3 (MGP_CAROLIEiJ_G0028043) #25	Mtus2 (MGP_CAROLIEiJ_G0028044) #27	Slc7a1 (MGP_CAROLIEiJ_G0028045) #28	Ubl3 (MGP_CAROLIEiJ_G0028046) #29	MGP_CAROLIEiJ_G0028047 #30	MGP_CAROLIEiJ_G0028048 #30	MGP_CAROLIEiJ_G0028049 #31	Uspl1 (MGP_CAROLIEiJ_G0028050) #32	MGP_CAROLIEiJ_G0028051 #33	Medag (MGP_CAROLIEiJ_G0028052) #34	Tex26 (MGP_CAROLIEiJ_G0028053) #35	Wdr95 (MGP_CAROLIEiJ_G0028054) #36	Hsph1 (MGP_CAROLIEiJ_G0028055) #37
Shrew mouse	MODERN SPECIES	15	Cdk8 (MGP_PahariEiJ_G0024591)	Wasf3 (MGP_PahariEiJ_G0024592) #7	Gpr12 (MGP_PahariEiJ_G0024593) #9	Usp12 (MGP_PahariEiJ_G0024594) #10	MGP_PahariEiJ_G0024595 ##11	Rasl11a (MGP_PahariEiJ_G0024596) #12	Gtf3a (MGP_PahariEiJ_G0024597) #13	Mtif3 (MGP_PahariEiJ_G0024598) #14	Lnx2 (MGP_PahariEiJ_G0024599) #15	Polr1d (MGP_PahariEiJ_G0024600) #16	Gsx1 (MGP_PahariEiJ_G0024601) #17	Pdx1 (MGP_PahariEiJ_G0024602) #18	Cdx2 (MGP_PahariEiJ_G0024603) #19	Urad (MGP_PahariEiJ_G0024604) #20	Flt3 (MGP_PahariEiJ_G0024605) #21	Pan3 (MGP_PahariEiJ_G0024606) #22	Flt1 (MGP_PahariEiJ_G0024607) #23	MGP_PahariEiJ_G0024608	Slc46a3 (MGP_PahariEiJ_G0024609) #25	Mtus2 (MGP_PahariEiJ_G0024610) #27	Slc7a1 (MGP_PahariEiJ_G0024611) #28	Ubl3 (MGP_PahariEiJ_G0024612) #29	MGP_PahariEiJ_G0024613 #30	MGP_PahariEiJ_G0024614 #30	MGP_PahariEiJ_G0024615 #31	Uspl1 (MGP_PahariEiJ_G0024616) #32	Alox5ap (MGP_PahariEiJ_G0024617) #33	Medag (MGP_PahariEiJ_G0024618) #34	Tex26 (MGP_PahariEiJ_G0024619) #35	MGP_PahariEiJ_G0024620 #36	Hsph1 (MGP_PahariEiJ_G0024621) #37
Rat	MODERN SPECIES	3	LOC120095889 (ENSRNOG00000050264)	Wasf3 (ENSRNOG00000048898) #7	Gpr12 (ENSRNOG00000039832) #9	Usp12 (ENSRNOG00000033411) #10	Rpl21 (ENSRNOG00000000957) #11	Rasl11a (ENSRNOG00000000956) #12	Gtf3a (ENSRNOG00000050016) #13	Mtif3 (ENSRNOG00000070811) #14	Lnx2 (ENSRNOG00000000955) #15	Polr1d (ENSRNOG00000000954) #16	Gsx1 (ENSRNOG00000000952) #17	Pdx1 (ENSRNOG00000046458) #18	Cdx2 (ENSRNOG00000032759) #19	Urad (ENSRNOG00000050360) #20	Flt3 (ENSRNOG00000054764) #21	Pan3 (ENSRNOG00000000942) #22	Flt1 (ENSRNOG00000000940) #23	Pomp (ENSRNOG00000049229) ##24	Slc46a3 (ENSRNOG00000000937) #25	Mtus2 (ENSRNOG00000032410) #27	Slc7a1 (ENSRNOG00000000924) #28	Katnal1 (ENSRNOG00000047618) #30	Rpl35a-ps6 (ENSRNOG00000069961)	AABR07035218.1 (ENSRNOG00000029813) ##31	Uspl1 (ENSRNOG00000000909) #32	Alox5ap (ENSRNOG00000000907) #33	AABR07035203.1 (ENSRNOG00000060198)	Medag (ENSRNOG00000000906) #34	Tex26 (ENSRNOG00000000905) #35	Wdr95 (ENSRNOG00000000904) #36	Hsph1 (ENSRNOG00000000902) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1878	Usp12 (ENSNGAG00000023867) #10	ENSNGAG00000012493	ENSNGAG00000022375 ##11	Rasl11a (ENSNGAG00000021721) #12	Gtf3a (ENSNGAG00000023691) #13	Mtif3 (ENSNGAG00000022911) #14	Lnx2 (ENSNGAG00000010972) #15	Polr1d (ENSNGAG00000006014) #16	ENSNGAG00000019459	ENSNGAG00000020643	Gsx1 (ENSNGAG00000013964) #17	ENSNGAG00000011527	Pdx1 (ENSNGAG00000024275) #18	Cdx2 (ENSNGAG00000019299) #19	Flt3 (ENSNGAG00000022203) #21	Pan3 (ENSNGAG00000005671) #22	Flt1 (ENSNGAG00000022615) #23	ENSNGAG00000019389 #24	Slc46a3 (ENSNGAG00000023221) #25	ENSNGAG00000022087	ENSNGAG00000011243 ##27	ENSNGAG00000023043 #27	Slc7a1 (ENSNGAG00000011095) #28	Ubl3 (ENSNGAG00000021531) #29	Katnal1 (ENSNGAG00000018344) #30	ENSNGAG00000020735 ##31	Uspl1 (ENSNGAG00000021450) #32	Alox5ap (ENSNGAG00000010455) #33	Medag (ENSNGAG00000021713) #34	Tex26 (ENSNGAG00000016306) #35	ENSNGAG00000021744
Lesser Egyptian jerboa	MODERN SPECIES	73	Cdk8 (ENSJJAG00000009532)	Wasf3 (ENSJJAG00000018294) #7	Gpr12 (ENSJJAG00000012507) #9	Usp12 (ENSJJAG00000019341) #10	Rasl11a (ENSJJAG00000020910) #12	Gtf3a (ENSJJAG00000011501) #13	Mtif3 (ENSJJAG00000013006) #14	Lnx2 (ENSJJAG00000014998) #15	ENSJJAG00000022671 #16	ENSJJAG00000009076	Gsx1 (ENSJJAG00000021574) #17	Pdx1 (ENSJJAG00000017468) #18	Cdx2 (ENSJJAG00000010229) #19	Urad (ENSJJAG00000022682) #20	Flt3 (ENSJJAG00000004796) #21	Pan3 (ENSJJAG00000013560) #22	Flt1 (ENSJJAG00000009276) #23	Pomp (ENSJJAG00000014017) #24	Slc46a3 (ENSJJAG00000015117) #25	ENSJJAG00000008307 #27	Slc7a1 (ENSJJAG00000022034) #28	Ubl3 (ENSJJAG00000016514) #29	Katnal1 (ENSJJAG00000011429) #30	ENSJJAG00000000696 #31	ENSJJAG00000014544 #32	Alox5ap (ENSJJAG00000004614) #33	Medag (ENSJJAG00000017396) #34	Tex26 (ENSJJAG00000007098) #35	Wdr95 (ENSJJAG00000015306) #36	Hsph1 (ENSJJAG00000000436) #37	B3glct (ENSJJAG00000022078)
Kangaroo rat	MODERN SPECIES	421	Wasf3 (ENSDORG00000003345) #7	Gpr12 (ENSDORG00000011141) #9	Usp12 (ENSDORG00000009137) #10	ENSDORG00000002224	ENSDORG00000002226 ##11	Rasl11a (ENSDORG00000026016) #12	Gtf3a (ENSDORG00000006079) #13	ENSDORG00000006081 #14	Lnx2 (ENSDORG00000013453) #15	Polr1d (ENSDORG00000029155) #16	Gsx1 (ENSDORG00000029182) #17	Pdx1 (ENSDORG00000008418) #18	Cdx2 (ENSDORG00000005495) #19	Urad (ENSDORG00000025006) #20	Flt3 (ENSDORG00000010727) #21	Pan3 (ENSDORG00000014727) #22	Flt1 (ENSDORG00000014729) #23	Pomp (ENSDORG00000012432) #24	Slc46a3 (ENSDORG00000012433) #25	ENSDORG00000025782 #27	Slc7a1 (ENSDORG00000006086) #28	ENSDORG00000026706	Ubl3 (ENSDORG00000026903) #29	Katnal1 (ENSDORG00000012794) #30	ENSDORG00000027930 #31	Uspl1 (ENSDORG00000007790) #32	Alox5ap (ENSDORG00000006041) #33	Medag (ENSDORG00000008557) #34	ENSDORG00000008558 #35	Wdr95 (ENSDORG00000026485) #36	ENSDORG00000014903 #37
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.c #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.p #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.c #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.p #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.c #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.p #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Degu	MODERN SPECIES	79	GPR12 (ENSODEG00000006388) #9	USP12 (ENSODEG00000006744) #10	ENSODEG00000005022 ##11	RASL11A (ENSODEG00000005775) #12	GTF3A (ENSODEG00000006725) #13	MTIF3 (ENSODEG00000006818) #14	LNX2 (ENSODEG00000006222) #15	ENSODEG00000005294 #16	ENSODEG00000006454	GSX1 (ENSODEG00000005135) #17	ENSODEG00000019134	PDX1 (ENSODEG00000005235) #18	CDX2 (ENSODEG00000007340) #19	ENSODEG00000007620 #20	FLT3 (ENSODEG00000007884) #21	PAN3 (ENSODEG00000005038) #22	ENSODEG00000006016	ENSODEG00000006274 #23	ENSODEG00000005111 #24	ENSODEG00000005569	SLC46A3 (ENSODEG00000006238) #25	ENSODEG00000006635	ENSODEG00000005871 #27	SLC7A1 (ENSODEG00000005306) #28	ENSODEG00000005438	UBL3 (ENSODEG00000005571) #29	KATNAL1 (ENSODEG00000005926) #30	ENSODEG00000006120 ##31	USPL1 (ENSODEG00000007176) #32	ALOX5AP (ENSODEG00000005645) #33	MEDAG (ENSODEG00000005967) #34
Long-tailed chinchilla	MODERN SPECIES	204	CDK8 (ENSCLAG00000003311)	WASF3 (ENSCLAG00000003372) #7	GPR12 (ENSCLAG00000003409) #9	USP12 (ENSCLAG00000003543) #10	Rpl21 (ENSCLAG00000003656) ##11	RASL11A (ENSCLAG00000003867) #12	GTF3A (ENSCLAG00000003912) #13	MTIF3 (ENSCLAG00000004080) #14	LNX2 (ENSCLAG00000004148) #15	POLR1D (ENSCLAG00000017623) #16	ENSCLAG00000004320	GSX1 (ENSCLAG00000004357) #17	PDX1 (ENSCLAG00000006652) #18	CDX2 (ENSCLAG00000006810) #19	FLT3 (ENSCLAG00000007093) #21	PAN3 (ENSCLAG00000007575) #22	FLT1 (ENSCLAG00000008187) #23	POMP (ENSCLAG00000008609) #24	SLC46A3 (ENSCLAG00000009379) #25
Guinea pig	MODERN SPECIES	6	RNF6 (ENSCPOG00000009120)	CDK8 (ENSCPOG00000040435)	WASF3 (ENSCPOG00000010156) #7	ENSCPOG00000020112	USP12 (ENSCPOG00000005241) #10	ENSCPOG00000008784 ##11	RASL11A (ENSCPOG00000031264) #12	GTF3A (ENSCPOG00000010143) #13	MTIF3 (ENSCPOG00000010148) #14	LNX2 (ENSCPOG00000010152) #15	ENSCPOG00000033461	ENSCPOG00000026854	PDX1 (ENSCPOG00000024534) #18	CDX2 (ENSCPOG00000007276) #19	FLT3 (ENSCPOG00000007285) #21	PAN3 (ENSCPOG00000013349) #22	FLT1 (ENSCPOG00000013357) #23	POMP (ENSCPOG00000001710) #24	SLC46A3 (ENSCPOG00000015460) #25	ENSCPOG00000005581 #27	SLC7A1 (ENSCPOG00000005590) #28	UBL3 (ENSCPOG00000036242) #29	KATNAL1 (ENSCPOG00000000804) #30	HMGB1 (ENSCPOG00000031835) ##31	USPL1 (ENSCPOG00000009937) #32	ALOX5AP (ENSCPOG00000032690) #33	MEDAG (ENSCPOG00000003921) #34	ENSCPOG00000007441 #37	ENSCPOG00000035490	B3GLCT (ENSCPOG00000007455)	RXFP2 (ENSCPOG00000009157)
Naked mole-rat female	MODERN SPECIES	2	WASF3 (ENSHGLG00000006350) #7	GPR12 (ENSHGLG00000042343) #9	ENSHGLG00000006711 #10	ENSHGLG00000005660 ##11	RASL11A (ENSHGLG00000005304) #12	ENSHGLG00000004173 #13	MTIF3 (ENSHGLG00000003959) #14	LNX2 (ENSHGLG00000003410) #15	POLR1D (ENSHGLG00000039229) #16	ENSHGLG00000003202	GSX1 (ENSHGLG00000039858) #17	PDX1 (ENSHGLG00000010243) #18	CDX2 (ENSHGLG00000009166) #19	URAD (ENSHGLG00000008479)	FLT3 (ENSHGLG00000005717) #21	PAN3 (ENSHGLG00000018782) #22	FLT1 (ENSHGLG00000003643) #23	ENSHGLG00000008991 #24	SLC46A3 (ENSHGLG00000007999) #25	ENSHGLG00000039882 ##24	ENSHGLG00000012383	ENSHGLG00000013589 #27	ENSHGLG00000019220 #28	ENSHGLG00000033244	UBL3 (ENSHGLG00000040587) #29	KATNAL1 (ENSHGLG00000003538) #30	ENSHGLG00000003352 ##31	USPL1 (ENSHGLG00000036213) #32	ALOX5AP (ENSHGLG00000013689) #33	MEDAG (ENSHGLG00000037818) #34	TEX26 (ENSHGLG00000018916) #35
Sciuridae	ANCESTRAL SPECIES	34	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.a ##11	ENSGT00940000153284.a.g.a ##10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Marmotini	ANCESTRAL SPECIES	29	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.a ##11	ENSGT00940000153284.a.g.a ##10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00950000183120.e.b.a.a.b.b.b.b ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Marmotini_b	ANCESTRAL SPECIES	39	ENSGT01050000244955.a.a	ENSGT00940000158453.a	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.a ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Squirrel	MODERN SPECIES	72	SLITRK5 (ENSSTOG00000022257)	GPR12 (ENSSTOG00000011362) #9	ENSSTOG00000023839	USP12 (ENSSTOG00000011364) #10	ENSSTOG00000033637 ##11	RASL11A (ENSSTOG00000023879) #12	GTF3A (ENSSTOG00000013853) #13	MTIF3 (ENSSTOG00000013866) #14	LNX2 (ENSSTOG00000013869) #15	POLR1D (ENSSTOG00000013877) #16	GSX1 (ENSSTOG00000029234) #17	PDX1 (ENSSTOG00000028173) #18	ENSSTOG00000002918 #19	ENSSTOG00000028014 #20	FLT3 (ENSSTOG00000002925) #21	PAN3 (ENSSTOG00000009453) #22	FLT1 (ENSSTOG00000021178) #23	POMP (ENSSTOG00000013687) #24	SLC46A3 (ENSSTOG00000013694) #25	ENSSTOG00000022794 #27	SLC7A1 (ENSSTOG00000012771) #28	UBL3 (ENSSTOG00000012777) #29	KATNAL1 (ENSSTOG00000008802) #30	ENSSTOG00000000443 #31	USPL1 (ENSSTOG00000028023) #32	ALOX5AP (ENSSTOG00000010915) #33	MEDAG (ENSSTOG00000003534) #34	ENSSTOG00000020892 #36	HSPH1 (ENSSTOG00000001700) #37	B3GLCT (ENSSTOG00000001710)	RXFP2 (ENSSTOG00000010636)
Arctic ground squirrel	MODERN SPECIES	58		SLITRK5 (ENSUPAG00010018031)	GPR12 (ENSUPAG00010018043) #9	USP12 (ENSUPAG00010018049) #10	ENSUPAG00010018061 ##11	RASL11A (ENSUPAG00010018073) #12	GTF3A (ENSUPAG00010018082) #13	MTIF3 (ENSUPAG00010018090) #14	LNX2 (ENSUPAG00010018096) #15	POLR1D (ENSUPAG00010018107) #16	GSX1 (ENSUPAG00010018112) #17	PDX1 (ENSUPAG00010018122) #18	CDX2 (ENSUPAG00010018125) #19	ENSUPAG00010018133 #20	FLT3 (ENSUPAG00010018139) #21	PAN3 (ENSUPAG00010000039) #22	FLT1 (ENSUPAG00010000212) #23	POMP (ENSUPAG00010000279) #24	SLC46A3 (ENSUPAG00010000307) #25	ENSUPAG00010000323	ENSUPAG00010000338 #27	SLC7A1 (ENSUPAG00010000429) #28	UBL3 (ENSUPAG00010000449) #29	KATNAL1 (ENSUPAG00010000483) #30	ENSUPAG00010000514 ##31	USPL1 (ENSUPAG00010000537) #32	ALOX5AP (ENSUPAG00010000582) #33	MEDAG (ENSUPAG00010000596) #34	TEX26 (ENSUPAG00010000608) #35	ENSUPAG00010000650 #36	HSPH1 (ENSUPAG00010000704) #37
Alpin marmot	MODERN SPECIES	13	ENSMMMG00000021355	SLITRK5 (ENSMMMG00000021362)	GPR12 (ENSMMMG00000021388) #9	ENSMMMG00000021396	ENSMMMG00000021402 ##10	RPL21 (ENSMMMG00000021415) ##11	RASL11A (ENSMMMG00000021424) #12	GTF3A (ENSMMMG00000021436) #13	MTIF3 (ENSMMMG00000021440) #14	LNX2 (ENSMMMG00000021459) #15	POLR1D (ENSMMMG00000021469) #16	GSX1 (ENSMMMG00000021480) #17	CDX2 (ENSMMMG00000021482) #19	ENSMMMG00000021485 #20	FLT3 (ENSMMMG00000021498) #21	PAN3 (ENSMMMG00000021592) #22	FLT1 (ENSMMMG00000021722) #23	POMP (ENSMMMG00000021745) #24	SLC46A3 (ENSMMMG00000021759) #25	ENSMMMG00000021777 #27	SLC7A1 (ENSMMMG00000021811) #28	UBL3 (ENSMMMG00000021836) #29	KATNAL1 (ENSMMMG00000021861) #30	ENSMMMG00000021875 ##31	ENSMMMG00000021912 #32	ALOX5AP (ENSMMMG00000021924) #33	MEDAG (ENSMMMG00000021928) #34	TEX26 (ENSMMMG00000021931) #35	ENSMMMG00000021936 #36	HSPH1 (ENSMMMG00000021945) #37	B3GLCT (ENSMMMG00000022023)
Eurasian red squirrel	MODERN SPECIES	13	ENSSVLG00005000440	ENSSVLG00005000420	GPR12 (ENSSVLG00005000385) #9	ENSSVLG00005000350 ##10	ENSSVLG00005000213 ##11	RASL11A (ENSSVLG00005023466) #12	GTF3A (ENSSVLG00005023413) #13	MTIF3 (ENSSVLG00005023396) #14	LNX2 (ENSSVLG00005023366) #15	POLR1D (ENSSVLG00005023318) #16	GSX1 (ENSSVLG00005023295) #17	PDX1 (ENSSVLG00005023276) #18	CDX2 (ENSSVLG00005023249) #19	URAD (ENSSVLG00005023233)	FLT3 (ENSSVLG00005023095) #21	PAN3 (ENSSVLG00005022998) #22	FLT1 (ENSSVLG00005022893) #23	POMP (ENSSVLG00005022839) #24	SLC46A3 (ENSSVLG00005022784) #25	MTUS2 (ENSSVLG00005022484) #27	SLC7A1 (ENSSVLG00005022416) #28	UBL3 (ENSSVLG00005022374) #29	KATNAL1 (ENSSVLG00005022343) #30	ENSSVLG00005022302 ##31	USPL1 (ENSSVLG00005022232) #32	ALOX5AP (ENSSVLG00005022177) #33	MEDAG (ENSSVLG00005022152) #34	TEX26 (ENSSVLG00005022083) #35	ENSSVLG00005021904 #36	HSPH1 (ENSSVLG00005021367) #37	B3GLCT (ENSSVLG00005021156)
Lagomorpha	ANCESTRAL SPECIES	166				ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28
Rabbit	MODERN SPECIES	468			USP12 (ENSOCUG00000007088) #10	ENSOCUG00000002506 ##11	RASL11A (ENSOCUG00000008121) #12	ENSOCUG00000038419	GTF3A (ENSOCUG00000011713) #13	MTIF3 (ENSOCUG00000011721) #14	LNX2 (ENSOCUG00000015683) #15	ENSOCUG00000015706	GSX1 (ENSOCUG00000023424) #17	PDX1 (ENSOCUG00000004891) #18	CDX2 (ENSOCUG00000004893) #19	URAD (ENSOCUG00000026219)	FLT3 (ENSOCUG00000004897) #21	PAN3 (ENSOCUG00000008509) #22	FLT1 (ENSOCUG00000008523) #23	POMP (ENSOCUG00000010137) #24	SLC46A3 (ENSOCUG00000010129) #25	ENSOCUG00000013473 #27	ENSOCUG00000030839 #27	SLC7A1 (ENSOCUG00000013493) #28
Pika	MODERN SPECIES	2256																PAN3 (ENSOPRG00000016465) #22	FLT1 (ENSOPRG00000016484) #23	POMP (ENSOPRG00000016517) #24	SLC46A3 (ENSOPRG00000016527) #25
Tree shrew	MODERN SPECIES	2583																PAN3 (ENSTBEG00000017359) #22	FLT1 (ENSTBEG00000009960) #23
Primates	ANCESTRAL SPECIES	29	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37	ENSGT00940000155499
Haplorrhini	ANCESTRAL SPECIES	43	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00950000183120.e.b.a.a.b.b.b.b ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37
Simiiformes	ANCESTRAL SPECIES	22	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37	ENSGT00940000155499
Catarrhini	ANCESTRAL SPECIES	21	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160.x #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00440000038159.p.b	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00910000146937	ENSGT00910000147093	ENSGT00940000153889.e.b.a.d.a	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00910000147174	ENSGT00940000155349 #28	ENSGT00910000148031	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32
Hominoidea	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160.x #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00440000038159.p.b	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00910000146937	ENSGT00910000147093	ENSGT00940000153889.e.b.a.d.a	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00910000147174	ENSGT00940000155349 #28	ENSGT00910000148031	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00940000155828.o.a	ENSGT00940000154686.g.b
Hominidae	ANCESTRAL SPECIES	23	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160.x #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00440000038159.p.b	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00910000146937	ENSGT00940000153889.f	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00910000147174	ENSGT00940000155349 #28	ENSGT00910000148031	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00940000155828.o.a	ENSGT00950000183120.e.b.a.a.b.b.b.b ##31	ENSGT00390000002316 #32
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	23	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160.x #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00910000146937	ENSGT00940000153889.f	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00910000147174	ENSGT00940000155349 #28	ENSGT00910000148031	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00940000155828.o.a	ENSGT00950000183203.d.h	ENSGT00940000153654.ub
Homo/Pan group	ANCESTRAL SPECIES	22	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160.x #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00910000146937	ENSGT00940000153889.f	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00910000147174	ENSGT00940000155349 #28	ENSGT00910000148031	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00940000155828.o.a	ENSGT00950000183203.d.h	ENSGT00940000153654.ub
Pan	ANCESTRAL SPECIES	22	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160.x #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00390000015470.z.b	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00910000146937	ENSGT00940000153889.f	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00930000151026.f	ENSGT00950000183026.B #27	ENSGT00910000147174	ENSGT00940000155349 #28	ENSGT00910000148031	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00940000155828.o.a	ENSGT00950000183203.d.h
Chimpanzee	MODERN SPECIES	4	GPR12 (ENSPTRG00000046989) #9	USP12 (ENSPTRG00000005727) #10	RPL21 (ENSPTRG00000005728) ##11	RASL11A (ENSPTRG00000005729) #12	GTF3A (ENSPTRG00000005730) #13	MTIF3 (ENSPTRG00000005732) #14	LNX2 (ENSPTRG00000005733) #15	POLR1D (ENSPTRG00000005734) #16	GSX1 (ENSPTRG00000005735) #17	PDX1 (ENSPTRG00000005736) #18	ENSPTRG00000005737	CDX2 (ENSPTRG00000043330) #19	URAD (ENSPTRG00000005739)	FLT3 (ENSPTRG00000005740) #21	ENSPTRG00000046829	PAN3 (ENSPTRG00000005742) #22	FLT1 (ENSPTRG00000005743) #23	ENSPTRG00000045890	ENSPTRG00000046663	POMP (ENSPTRG00000005745) #24	SLC46A3 (ENSPTRG00000005746) #25	ENSPTRG00000045489	MTUS2 (ENSPTRG00000005747) #27	ENSPTRG00000046056	SLC7A1 (ENSPTRG00000005750) #28	ENSPTRG00000049804	UBL3 (ENSPTRG00000005751) #29	KATNAL1 (ENSPTRG00000005753) #30	ENSPTRG00000044243	UBE2L5 (ENSPTRG00000050842)	ENSPTRG00000048008 ##31
Bonobo	MODERN SPECIES	4	CDK8 (ENSPPAG00000035126)	WASF3 (ENSPPAG00000035699) #7	GPR12 (ENSPPAG00000007707) #9	ENSPPAG00000007246 #10	ENSPPAG00000042860 ##11	RASL11A (ENSPPAG00000027996) #12	GTF3A (ENSPPAG00000034725) #13	MTIF3 (ENSPPAG00000027304) #14	LNX2 (ENSPPAG00000027444) #15	ENSPPAG00000028138 #16	GSX1 (ENSPPAG00000032556) #17	ENSPPAG00000032720 #18	ENSPPAG00000032440	CDX2 (ENSPPAG00000032963) #19	FLT3 (ENSPPAG00000015701) #21	PAN3 (ENSPPAG00000027826) #22	ENSPPAG00000030264	ENSPPAG00000033250 #23	ENSPPAG00000027416	POMP (ENSPPAG00000036286) #24	SLC46A3 (ENSPPAG00000035795) #25	ENSPPAG00000027903	MTUS2 (ENSPPAG00000032687) #27	ENSPPAG00000034238	SLC7A1 (ENSPPAG00000037016) #28	ENSPPAG00000015303	UBL3 (ENSPPAG00000027496) #29	KATNAL1 (ENSPPAG00000033530) #30	ENSPPAG00000037440	UBE2L5 (ENSPPAG00000032233)	ENSPPAG00000030148 ##31
Human	MODERN SPECIES	4	CDK8 (ENSG00000132964)	WASF3 (ENSG00000132970) #7	GPR12 (ENSG00000132975) #9	USP12 (ENSG00000152484) #10	RPL21 (ENSG00000122026) ##11	RASL11A (ENSG00000122035) #12	GTF3A (ENSG00000122034) #13	MTIF3 (ENSG00000122033) #14	LNX2 (ENSG00000139517) #15	POLR1D (ENSG00000186184) #16	GSX1 (ENSG00000169840) #17	PDX1 (ENSG00000139515) #18	CDX2 (ENSG00000165556) #19	URAD (ENSG00000183463)	FLT3 (ENSG00000122025) #21	PAN3 (ENSG00000152520) #22	FLT1 (ENSG00000102755) #23	POMP (ENSG00000132963) #24	SLC46A3 (ENSG00000139508) #25	MTUS2 (ENSG00000132938) #27	SLC7A1 (ENSG00000139514) #28	UBL3 (ENSG00000122042) #29	KATNAL1 (ENSG00000102781) #30	UBE2L5 (ENSG00000236444)	HMGB1 (ENSG00000189403) ##31	USPL1 (ENSG00000132952) #32	ALOX5AP (ENSG00000132965) #33	MEDAG (ENSG00000102802) #34	TEX26 (ENSG00000175664) #35	HSPH1 (ENSG00000120694) #37	B3GLCT (ENSG00000187676)
Gorilla	MODERN SPECIES	4	CDK8 (ENSGGOG00000006569)	WASF3 (ENSGGOG00000012518) #7	GPR12 (ENSGGOG00000000849) #9	ENSGGOG00000011358 #10	ENSGGOG00000003002 ##11	RASL11A (ENSGGOG00000008785) #12	GTF3A (ENSGGOG00000008407) #13	MTIF3 (ENSGGOG00000041079) #14	LNX2 (ENSGGOG00000016167) #15	POLR1D (ENSGGOG00000004235) #16	GSX1 (ENSGGOG00000005011) #17	PDX1 (ENSGGOG00000002569) #18	CDX2 (ENSGGOG00000005487) #19	URAD (ENSGGOG00000005489)	FLT3 (ENSGGOG00000000882) #21	PAN3 (ENSGGOG00000016079) #22	FLT1 (ENSGGOG00000008750) #23	ENSGGOG00000036812	ENSGGOG00000036780	POMP (ENSGGOG00000015316) #24	SLC46A3 (ENSGGOG00000014254) #25	ENSGGOG00000042729	UBL3 (ENSGGOG00000023146) #29	KATNAL1 (ENSGGOG00000026875) #30	ENSGGOG00000024714	UBE2L5 (ENSGGOG00000006857)	HMGB1 (ENSGGOG00000026764) ##31	USPL1 (ENSGGOG00000004673) #32	ENSGGOG00000013859 #33	MEDAG (ENSGGOG00000009867) #34	TEX26 (ENSGGOG00000016812) #35
Orangutan	MODERN SPECIES	4	GPR12 (ENSPPYG00000005231) #9	USP12 (ENSPPYG00000005232) #10	RPL21 (ENSPPYG00000005233) ##11	RASL11A (ENSPPYG00000005234) #12	GTF3A (ENSPPYG00000005235) #13	MTIF3 (ENSPPYG00000005236) #14	LNX2 (ENSPPYG00000005237) #15	ENSPPYG00000005238	GSX1 (ENSPPYG00000005239) #17	PDX1 (ENSPPYG00000005240) #18	ENSPPYG00000005241	CDX2 (ENSPPYG00000005242) #19	URAD (ENSPPYG00000005243)	FLT3 (ENSPPYG00000005244) #21	ENSPPYG00000040072	PAN3 (ENSPPYG00000005245) #22	FLT1 (ENSPPYG00000005246) #23	ENSPPYG00000034417	ENSPPYG00000038952	POMP (ENSPPYG00000005247) #24	SLC46A3 (ENSPPYG00000005248) #25	MTUS2 (ENSPPYG00000005249) #27	SLC7A1 (ENSPPYG00000005250) #28	ENSPPYG00000034870	UBL3 (ENSPPYG00000037129) #29	KATNAL1 (ENSPPYG00000005253) #30	ENSPPYG00000031030	UBE2L5 (ENSPPYG00000005254)	ENSPPYG00000030447 ##31	USPL1 (ENSPPYG00000005543) #32	ENSPPYG00000005255 #33
Gibbon	MODERN SPECIES	24	ATP2B4 (ENSNLEG00000018117)	ENSNLEG00000000323 #10	ENSNLEG00000000327 ##11	RASL11A (ENSNLEG00000000329) #12	GTF3A (ENSNLEG00000000331) #13	MTIF3 (ENSNLEG00000000343) #14	LNX2 (ENSNLEG00000000345) #15	ENSNLEG00000000358 #16	GSX1 (ENSNLEG00000000360) #17	PDX1 (ENSNLEG00000000362) #18	CDX2 (ENSNLEG00000000365) #19	URAD (ENSNLEG00000000369)	FLT3 (ENSNLEG00000000372) #21	ENSNLEG00000035718	ENSNLEG00000029210	PAN3 (ENSNLEG00000000388) #22	FLT1 (ENSNLEG00000000456) #23	ENSNLEG00000030098	ENSNLEG00000033802	ENSNLEG00000000571	POMP (ENSNLEG00000000572) #24	SLC46A3 (ENSNLEG00000000599) #25	ENSNLEG00000000618 #27	ENSNLEG00000033304	ENSNLEG00000035615 #27	SLC7A1 (ENSNLEG00000000622) #28	UBL3 (ENSNLEG00000000660) #29	KATNAL1 (ENSNLEG00000000679) #30	ENSNLEG00000000717	UBE2L5 (ENSNLEG00000018657)	ENSNLEG00000000720 ##31
Cercopithecidae	ANCESTRAL SPECIES	23	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00440000038159.p.b	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00910000146937	ENSGT00910000147093	ENSGT00940000153889.e.b.a.d.a	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00910000147174	ENSGT00940000155349 #28	ENSGT00910000148031	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32
Cercopithecinae	ANCESTRAL SPECIES	20	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00440000038159.p.b	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00910000147174	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000155828.o.a	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35
Cercopithecinae_a	ANCESTRAL SPECIES	19	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.b.a.a.a.m ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160.x #16	ENSGT00910000147903	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00440000038159.p.b	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00910000146937	ENSGT00910000147093	ENSGT00940000153783.a	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00910000147174	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000155828.o.a	ENSGT00940000156630 #30	ENSGT00940000154686.g.b	ENSGT00390000002316 #32
Macaca	ANCESTRAL SPECIES	19	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160.x #16	ENSGT00910000147903	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00440000038159.p.b	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00910000147093	ENSGT00940000153783.a	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00940000155828.o.a	ENSGT00950000183120.e.b.a.b ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35
Pig-tailed macaque	MODERN SPECIES	165	GPR12 (ENSMNEG00000010974) #9	ENSMNEG00000039505 #10	ENSMNEG00000034115 ##11	RASL11A (ENSMNEG00000033345) #12	GTF3A (ENSMNEG00000043473) #13	MTIF3 (ENSMNEG00000032443) #14	LNX2 (ENSMNEG00000040860) #15	ENSMNEG00000034652	ENSMNEG00000008630 #16	GSX1 (ENSMNEG00000032682) #17	PDX1 (ENSMNEG00000032095) #18	CDX2 (ENSMNEG00000043440) #19	URAD (ENSMNEG00000045421)	FLT3 (ENSMNEG00000032442) #21	ENSMNEG00000043801	PAN3 (ENSMNEG00000032817) #22	FLT1 (ENSMNEG00000032149) #23	ENSMNEG00000028177	ENSMNEG00000043904	POMP (ENSMNEG00000031404) #24	SLC46A3 (ENSMNEG00000038996) #25	MTUS2 (ENSMNEG00000039238) #27	SLC7A1 (ENSMNEG00000044453) #28	SLC5A7 (ENSMNEG00000039266)	ENSMNEG00000022050	ST6GAL2 (ENSMNEG00000036708)	ENSMNEG00000019179	ENSMNEG00000044732	UXS1 (ENSMNEG00000040004)	ECRG4 (ENSMNEG00000043594)	NCK2 (ENSMNEG00000039028)
Macaca_a	ANCESTRAL SPECIES	19	ENSGT00940000153284.a.h.i.a #10	ENSGT01100000263493.a.b.a.a.b.b.a.b.a.a.a.a.a.b.a	ENSGT00950000182922.a.a.a.b.b.a.a.a.m ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT01100000263493.a.b.a.a.b.a.b.b	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00440000038159.p.b	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00910000147093	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00940000155828.o.a	ENSGT00950000183120.e.b.a.b ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37
Rhesus	MODERN SPECIES	8	ENSMMUG00000050226	USP12 (ENSMMUG00000021425) #10	ENSMMUG00000054994	ENSMMUG00000058755 ##11	RASL11A (ENSMMUG00000049650) #12	GTF3A (ENSMMUG00000009029) #13	MTIF3 (ENSMMUG00000009030) #14	ENSMMUG00000059867	LNX2 (ENSMMUG00000058786) #15	POLR1D (ENSMMUG00000020386)	GSX1 (ENSMMUG00000004507) #17	PDX1 (ENSMMUG00000064615) #18	CDX2 (ENSMMUG00000052070) #19	URAD (ENSMMUG00000016138)	FLT3 (ENSMMUG00000016139) #21	PAN3 (ENSMMUG00000022522) #22	FLT1 (ENSMMUG00000021538) #23	ENSMMUG00000063649	POMP (ENSMMUG00000058998) #24	SLC46A3 (ENSMMUG00000013721) #25	MTUS2 (ENSMMUG00000008658) #27	SLC7A1 (ENSMMUG00000008661) #28	UBL3 (ENSMMUG00000003771) #29	KATNAL1 (ENSMMUG00000004922) #30	UBE2L5 (ENSMMUG00000008940)	ENSMMUG00000058466	HMGB1 (ENSMMUG00000046615) ##31	ENSMMUG00000052770	USPL1 (ENSMMUG00000007597) #32	ALOX5AP (ENSMMUG00000005572) #33	ENSMMUG00000053993
Crab-eating macaque	MODERN SPECIES	8	ENSMFAG00000062305	ENSMFAG00000053340 ##11	RASL11A (ENSMFAG00000044628) #12	GTF3A (ENSMFAG00000044837) #13	MTIF3 (ENSMFAG00000045045) #14	ENSMFAG00000050995	LNX2 (ENSMFAG00000045245) #15	ENSMFAG00000045264	GSX1 (ENSMFAG00000037158) #17	PDX1 (ENSMFAG00000063371) #18	CDX2 (ENSMFAG00000051158) #19	URAD (ENSMFAG00000043442)	FLT3 (ENSMFAG00000044854) #21	ENSMFAG00000052223	ENSMFAG00000063510	PAN3 (ENSMFAG00000025538) #22	FLT1 (ENSMFAG00000035718) #23	ENSMFAG00000039222	POMP (ENSMFAG00000025369) #24	SLC46A3 (ENSMFAG00000030072) #25	MTUS2 (ENSMFAG00000032200) #27	SLC7A1 (ENSMFAG00000043457) #28	UBL3 (ENSMFAG00000044955) #29	KATNAL1 (ENSMFAG00000053013) #30	ENSMFAG00000053527	UBE2L5 (ENSMFAG00000045697)	ENSMFAG00000030905 ##31	USPL1 (ENSMFAG00000032370) #32	ALOX5AP (ENSMFAG00000032586) #33	MEDAG (ENSMFAG00000035649) #34	TEX26 (ENSMFAG00000035671) #35
Cercopithecinae_b	ANCESTRAL SPECIES	28	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.b.a.a.a.m ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160.x #16	ENSGT00910000147903	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00440000038159.p.b	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00910000146937	ENSGT00910000147093	ENSGT00940000153783.a	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00910000147174	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000155828.o.a	ENSGT00940000156630 #30	ENSGT00940000154686.g.b	ENSGT00390000002316 #32
Olive baboon	MODERN SPECIES	6	GPR12 (ENSPANG00000003061) #9	USP12 (ENSPANG00000011533) #10	ENSPANG00000011984 ##11	RASL11A (ENSPANG00000044196) #12	GTF3A (ENSPANG00000012593) #13	MTIF3 (ENSPANG00000005047) #14	LNX2 (ENSPANG00000012983) #15	ENSPANG00000020259 #16	ENSPANG00000038544	GSX1 (ENSPANG00000017129) #17	ENSPANG00000047094	PDX1 (ENSPANG00000012683) #18	CDX2 (ENSPANG00000050183) #19	URAD (ENSPANG00000014018)	FLT3 (ENSPANG00000009315) #21	PAN3 (ENSPANG00000001988) #22	FLT1 (ENSPANG00000009892) #23	ENSPANG00000044787	POMP (ENSPANG00000046275) #24	SLC46A3 (ENSPANG00000020218) #25	MTUS2 (ENSPANG00000013682) #27	SLC7A1 (ENSPANG00000012138) #28	UBL3 (ENSPANG00000008471) #29	KATNAL1 (ENSPANG00000023364) #30	UBE2L5 (ENSPANG00000043221)	HMGB1 (ENSPANG00000007200) ##31	USPL1 (ENSPANG00000005488) #32	ALOX5AP (ENSPANG00000020217) #33	MEDAG (ENSPANG00000021857) #34	TEX26 (ENSPANG00000012755) #35	HSPH1 (ENSPANG00000012232) #37
Cercopithecinae_d	ANCESTRAL SPECIES	93	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.b.a.a.a.m ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160.x #16	ENSGT00910000147903	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00440000038159.p.b	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00910000146937	ENSGT00910000147093	ENSGT00940000153783.a	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00910000147174	ENSGT00940000155349 #28	ENSGT00910000148031
Sooty mangabey	MODERN SPECIES	255	ENSCATG00000018180	ENSCATG00000038452 #10	ENSCATG00000032591 ##11	RASL11A (ENSCATG00000033838) #12	GTF3A (ENSCATG00000032361) #13	MTIF3 (ENSCATG00000007775) #14	LNX2 (ENSCATG00000035354) #15	ENSCATG00000030710 #16	ENSCATG00000002488	GSX1 (ENSCATG00000028004) #17	PDX1 (ENSCATG00000035793) #18	CDX2 (ENSCATG00000007363) #19	URAD (ENSCATG00000007826)	FLT3 (ENSCATG00000014529) #21	ENSCATG00000032726	PAN3 (ENSCATG00000030893) #22	FLT1 (ENSCATG00000034541) #23	ENSCATG00000024438	ENSCATG00000028829	ENSCATG00000033485	POMP (ENSCATG00000037462) #24	SLC46A3 (ENSCATG00000021488) #25	MTUS2 (ENSCATG00000041831) #27	ENSCATG00000037549	SLC7A1 (ENSCATG00000025899) #28	ENSCATG00000034802
Drill	MODERN SPECIES	1324	RNF6 (ENSMLEG00000038569)	CDK8 (ENSMLEG00000040071)	WASF3 (ENSMLEG00000040168) #7	GPR12 (ENSMLEG00000002545) #9	ENSMLEG00000033598 #10	ENSMLEG00000024280 ##11	RASL11A (ENSMLEG00000036089) #12	GTF3A (ENSMLEG00000039703) #13	MTIF3 (ENSMLEG00000039110) #14	LNX2 (ENSMLEG00000039062) #15	ENSMLEG00000041048 #16	ENSMLEG00000041805	PDX1 (ENSMLEG00000032316) #18	CDX2 (ENSMLEG00000037430) #19	FLT3 (ENSMLEG00000037398) #21	PAN3 (ENSMLEG00000008619) #22	ENSMLEG00000003098	FLT1 (ENSMLEG00000034284) #23	ENSMLEG00000038076	ENSMLEG00000036390	ENSMLEG00000042438	POMP (ENSMLEG00000039576) #24	SLC46A3 (ENSMLEG00000044293) #25	ENSMLEG00000006158 ##27
Vervet Monkey	MODERN SPECIES	22	RNF6 (ENSCSAG00000017991)	CDK8 (ENSCSAG00000017989)	WASF3 (ENSCSAG00000017987) #7	GPR12 (ENSCSAG00000018592) #9	ENSCSAG00000017986 #10	RASL11A (ENSCSAG00000017985) #12	GTF3A (ENSCSAG00000017983) #13	MTIF3 (ENSCSAG00000017982) #14	LNX2 (ENSCSAG00000017981) #15	ENSCSAG00000017980	GSX1 (ENSCSAG00000017979) #17	PDX1 (ENSCSAG00000017977) #18	CDX2 (ENSCSAG00000017976) #19	URAD (ENSCSAG00000017975)	FLT3 (ENSCSAG00000017973) #21	PAN3 (ENSCSAG00000017971) #22	FLT1 (ENSCSAG00000017969) #23	POMP (ENSCSAG00000017967) #24	SLC46A3 (ENSCSAG00000017966) #25	MTUS2 (ENSCSAG00000017964) #27	SLC7A1 (ENSCSAG00000017961) #28	UBL3 (ENSCSAG00000017959) #29	KATNAL1 (ENSCSAG00000017958) #30	USPL1 (ENSCSAG00000017953) #32	ALOX5AP (ENSCSAG00000017950) #33	MEDAG (ENSCSAG00000017948) #34	TEX26 (ENSCSAG00000017946) #35	HSPH1 (ENSCSAG00000017943) #37	B3GLCT (ENSCSAG00000017941)	RXFP2 (ENSCSAG00000017936)	FRY (ENSCSAG00000017926)
Rhinopithecus	ANCESTRAL SPECIES	56	ENSGT00940000165378.d	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.b.a.a.a.m ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160.x #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00910000146937	ENSGT00910000147093	ENSGT00940000153889.e.b.a.d.a	ENSGT00390000010734.j.i #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.A.b ##27	ENSGT00910000147174	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00910000148031	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00940000153654	ENSGT00390000002575
Black snub-nosed monkey	MODERN SPECIES	1391	CDK8 (ENSRBIG00000040781)	WASF3 (ENSRBIG00000033396) #7	GPR12 (ENSRBIG00000001744) #9	ENSRBIG00000041212 #10	ENSRBIG00000036802 ##11	RASL11A (ENSRBIG00000043749) #12	GTF3A (ENSRBIG00000044964) #13	MTIF3 (ENSRBIG00000027271) #14	LNX2 (ENSRBIG00000028850) #15	ENSRBIG00000036378 #16	GSX1 (ENSRBIG00000032182) #17	PDX1 (ENSRBIG00000039353) #18	CDX2 (ENSRBIG00000038667) #19	ENSRBIG00000030643 #20	FLT3 (ENSRBIG00000042399) #21	PAN3 (ENSRBIG00000036981) #22	FLT1 (ENSRBIG00000036952) #23	ENSRBIG00000034378	ENSRBIG00000017410	ENSRBIG00000040184	ENSRBIG00000028141 #24	SLC46A3 (ENSRBIG00000039296) #25	ENSRBIG00000043698	MTUS2 (ENSRBIG00000042717) #27	SLC7A1 (ENSRBIG00000030519) #28	ENSRBIG00000024318	UBL3 (ENSRBIG00000032584) #29
Golden snub-nosed monkey	MODERN SPECIES	603										GSX1 (ENSRROG00000032356) #17	PDX1 (ENSRROG00000038796) #18	CDX2 (ENSRROG00000036416) #19	URAD (ENSRROG00000032393)	FLT3 (ENSRROG00000032511) #21	ENSRROG00000038089	PAN3 (ENSRROG00000044835) #22	FLT1 (ENSRROG00000044082) #23	ENSRROG00000044673	ENSRROG00000036924	ENSRROG00000028953	ENSRROG00000035051 #24	SLC46A3 (ENSRROG00000013197) #25	ENSRROG00000029261 ##27
Platyrrhini	ANCESTRAL SPECIES	23	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.b.a.a.a ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.b.b ##31	ENSGT00950000183120.e.b.a.a.b.b.b.b ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37
Cebidae	ANCESTRAL SPECIES	26	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.b.a.a.a ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.b.b ##31	ENSGT00950000183120.e.b.a.a.b.b.b.b ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37
Marmoset	MODERN SPECIES	17	ENSCJAG00000073678	ENSCJAG00000069611	ENSCJAG00000044684 ##11	RASL11A (ENSCJAG00000019369) #12	GTF3A (ENSCJAG00000077697) #13	MTIF3 (ENSCJAG00000019378) #14	LNX2 (ENSCJAG00000019379) #15	POLR1D (ENSCJAG00000044669) #16	GSX1 (ENSCJAG00000080181) #17	PDX1 (ENSCJAG00000078316) #18	ENSCJAG00000076582	CDX2 (ENSCJAG00000019398) #19	ENSCJAG00000019404 #20	FLT3 (ENSCJAG00000019405) #21	ENSCJAG00000073991	PAN3 (ENSCJAG00000019421) #22	FLT1 (ENSCJAG00000019447) #23	ENSCJAG00000080582	POMP (ENSCJAG00000019473) #24	SLC46A3 (ENSCJAG00000019491) #25	MTUS2 (ENSCJAG00000019500) #27	ENSCJAG00000072801	SLC7A1 (ENSCJAG00000019515) #28	ENSCJAG00000058143	UBL3 (ENSCJAG00000019517) #29	KATNAL1 (ENSCJAG00000021612) #30	ENSCJAG00000079039	ENSCJAG00000020439 ##31	USPL1 (ENSCJAG00000021616) #32	ALOX5AP (ENSCJAG00000021617) #33	MEDAG (ENSCJAG00000018674) #34
Cebidae_a	ANCESTRAL SPECIES	28	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h.j #10	ENSGT00950000182922.a.a.a.b.b.a.a.a ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00390000011417.k.d	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.b.b ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37
Capuchin	MODERN SPECIES	103	ENSCCAG00000021328	USP12 (ENSCCAG00000023369) #10	ENSCCAG00000031101 ##11	RASL11A (ENSCCAG00000021842) #12	GTF3A (ENSCCAG00000029730) #13	MTIF3 (ENSCCAG00000036048) #14	ENSCCAG00000026568	LNX2 (ENSCCAG00000020368) #15	ENSCCAG00000021349 #16	GSX1 (ENSCCAG00000025929) #17	PDX1 (ENSCCAG00000036295) #18	CDX2 (ENSCCAG00000025801) #19	ENSCCAG00000029430 #20	FLT3 (ENSCCAG00000022587) #21	ENSCCAG00000027785	PAN3 (ENSCCAG00000021218) #22	ENSCCAG00000000468	FLT1 (ENSCCAG00000035784) #23	POMP (ENSCCAG00000027871) #24	SLC46A3 (ENSCCAG00000025858) #25	MTUS2 (ENSCCAG00000025313) #27	SLC7A1 (ENSCCAG00000000822) #28	CIAPIN1 (ENSCCAG00000020425)	UBL3 (ENSCCAG00000021780) #29	KATNA1 (ENSCCAG00000029984) #30	ENSCCAG00000028011 ##31	ENSCCAG00000032047	REPS2 (ENSCCAG00000024409)	ENSCCAG00000022504	TXLNG (ENSCCAG00000030583)	SYAP1 (ENSCCAG00000034423)
Bolivian squirrel monkey	MODERN SPECIES	42	ENSSBOG00000031441 ##11	RASL11A (ENSSBOG00000025363) #12	GTF3A (ENSSBOG00000002098) #13	MTIF3 (ENSSBOG00000030469) #14	LNX2 (ENSSBOG00000025148) #15	ENSSBOG00000014497	ENSSBOG00000028482 #16	ENSSBOG00000015416	GSX1 (ENSSBOG00000026103) #17	PDX1 (ENSSBOG00000031436) #18	CDX2 (ENSSBOG00000031573) #19	ENSSBOG00000027743 #20	ENSSBOG00000020835	FLT3 (ENSSBOG00000026666) #21	ENSSBOG00000032374	PAN3 (ENSSBOG00000020298) #22	ENSSBOG00000020899	FLT1 (ENSSBOG00000015766) #23	POMP (ENSSBOG00000032229) #24	SLC46A3 (ENSSBOG00000025396) #25	ENSSBOG00000019071	MTUS2 (ENSSBOG00000026505) #27	SLC7A1 (ENSSBOG00000020061) #28	ENSSBOG00000028866	UBL3 (ENSSBOG00000009211) #29	ENSSBOG00000020013	KATNAL1 (ENSSBOG00000009792) #30	ENSSBOG00000023208 ##31	ENSSBOG00000024496	USPL1 (ENSSBOG00000028053) #32	ALOX5AP (ENSSBOG00000035529) #33
Mas night monkey	MODERN SPECIES	331	NUP58 (ENSANAG00000023073)	ENSANAG00000032118 #10	ENSANAG00000023031 ##11	RASL11A (ENSANAG00000027999) #12	GTF3A (ENSANAG00000019293) #13	MTIF3 (ENSANAG00000031630) #14	ENSANAG00000024188	LNX2 (ENSANAG00000028866) #15	POLR1D (ENSANAG00000024486) #16	GSX1 (ENSANAG00000020508) #17	PDX1 (ENSANAG00000033534) #18	CDX2 (ENSANAG00000030392) #19	URAD (ENSANAG00000029018)	FLT3 (ENSANAG00000025242) #21	ENSANAG00000034890	PAN3 (ENSANAG00000028419) #22	ENSANAG00000028102	FLT1 (ENSANAG00000027521) #23	ENSANAG00000035277 #24
Tarsier	MODERN SPECIES	5212														ENSTSYG00000029265 #19	FLT3 (ENSTSYG00000011237) #21	PAN3 (ENSTSYG00000011845) #22	ENSTSYG00000034627	CD2AP (ENSTSYG00000002464)	ENSTSYG00000002476	ADGRF4 (ENSTSYG00000002483)	OPN5 (ENSTSYG00000005962)
Strepsirrhini	ANCESTRAL SPECIES	41	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.b.a.a.a ##11	ENSGT00950000182922.a.a.a.b.a.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.b.b.a.b.b #31	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37	ENSGT00940000155499
Lemuriformes	ANCESTRAL SPECIES	18	ENSGT00940000153259.a.a.b.d	ENSGT00390000016695	ENSGT00940000159187	ENSGT00940000153284.a.h #10	ENSGT00950000182922.a.a.a.b.b.a.a.a ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00940000158948.b
Lemuriformes_a	ANCESTRAL SPECIES	41																ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a.n ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00940000158948.b
Greater bamboo lemur	MODERN SPECIES	560																PAN3 (ENSPSMG00000018171) #22	FLT1 (ENSPSMG00000018075) #23	ENSPSMG00000017984 #24	SLC46A3 (ENSPSMG00000017980) #25	ENSPSMG00000017966 #27	SLC7A1 (ENSPSMG00000017930) #28	UBL3 (ENSPSMG00000017878) #29	KATNAL1 (ENSPSMG00000017845) #30	HMGB1 (ENSPSMG00000017832) ##31	USPL1 (ENSPSMG00000017819) #32	ALOX5AP (ENSPSMG00000017803) #33	MEDAG (ENSPSMG00000017788) #34	TEX26 (ENSPSMG00000017783) #35	HSPH1 (ENSPSMG00000017725) #37
Coquerels sifaka	MODERN SPECIES	251																PAN3 (ENSPCOG00000000176) #22	FLT1 (ENSPCOG00000020203) #23	ENSPCOG00000024553 #24	SLC46A3 (ENSPCOG00000023509) #25	MTUS2 (ENSPCOG00000022249) #27	SLC7A1 (ENSPCOG00000025154) #28	UBL3 (ENSPCOG00000027179) #29	KATNAL1 (ENSPCOG00000022614) #30	ENSPCOG00000013493 ##31	USPL1 (ENSPCOG00000021502) #32	ALOX5AP (ENSPCOG00000016712) #33	MEDAG (ENSPCOG00000020360) #34	TEX26 (ENSPCOG00000022109) #35	ENSPCOG00000027960 #37	B3GLCT (ENSPCOG00000004609)	RXFP2 (ENSPCOG00000011955)
Mouse lemur	MODERN SPECIES	4	SACS (ENSMICG00000034895)	SGCG (ENSMICG00000038162)	ENSMICG00000028275	ENSMICG00000006269 #10	RASL11A (ENSMICG00000029724) #12	GTF3A (ENSMICG00000014763) #13	MTIF3 (ENSMICG00000014777) #14	LNX2 (ENSMICG00000016873) #15	ENSMICG00000016883 #16	GSX1 (ENSMICG00000044124) #17	PDX1 (ENSMICG00000043487) #18	CDX2 (ENSMICG00000031345) #19	ENSMICG00000032881 #20	FLT3 (ENSMICG00000016201) #21	ENSMICG00000027752	PAN3 (ENSMICG00000016237) #22	FLT1 (ENSMICG00000016251) #23	POMP (ENSMICG00000032068) #24	SLC46A3 (ENSMICG00000016295) #25	ENSMICG00000016299 #27	ENSMICG00000032922 #27	SLC7A1 (ENSMICG00000016312) #28	UBL3 (ENSMICG00000033508) #29	KATNAL1 (ENSMICG00000004250) #30	ENSMICG00000007144 #31	USPL1 (ENSMICG00000045622) #32	ALOX5AP (ENSMICG00000001953) #33	MEDAG (ENSMICG00000011156) #34	TEX26 (ENSMICG00000008723) #35	HSPH1 (ENSMICG00000011892) #37	B3GLCT (ENSMICG00000011910)
Bushbaby	MODERN SPECIES	235	GPR12 (ENSOGAG00000006144) #9	USP12 (ENSOGAG00000030639) #10	ENSOGAG00000030191	ENSOGAG00000008181 ##11	RASL11A (ENSOGAG00000008177) #12	GTF3A (ENSOGAG00000014589) #13	MTIF3 (ENSOGAG00000014597) #14	LNX2 (ENSOGAG00000014599) #15	POLR1D (ENSOGAG00000014601) #16	GSX1 (ENSOGAG00000011242) #17	PDX1 (ENSOGAG00000016688) #18	CDX2 (ENSOGAG00000026117) #19	ENSOGAG00000016692 #20	FLT3 (ENSOGAG00000016694) #21	ENSOGAG00000031357	PAN3 (ENSOGAG00000014604) #22	FLT1 (ENSOGAG00000014611) #23	POMP (ENSOGAG00000006044) #24	SLC46A3 (ENSOGAG00000006042) #25	MTUS2 (ENSOGAG00000010807) #27	SLC7A1 (ENSOGAG00000010813) #28	UBL3 (ENSOGAG00000004035) #29	KATNAL1 (ENSOGAG00000011308) #30	ENSOGAG00000003205 #31	ENSOGAG00000030054	ENSOGAG00000026314	USPL1 (ENSOGAG00000015490) #32	ALOX5AP (ENSOGAG00000015495) #33	MEDAG (ENSOGAG00000034882) #34	TEX26 (ENSOGAG00000006834) #35	HSPH1 (ENSOGAG00000009898) #37
Laurasiatheria	ANCESTRAL SPECIES	20	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b #11	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00740000117041	ENSGT00940000162967 #36
Eulipotyphla	ANCESTRAL SPECIES	1148																ENSGT00390000001504 #22	ENSGT00940000158713 #23
Common shrew	MODERN SPECIES	3681																PAN3 (ENSSARG00000012201) #22
Hedgehog	MODERN SPECIES	4760																PAN3 (ENSEEUG00000014833) #22	FLT1 (ENSEEUG00000014914) #23
Laurasiatheria_a	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00740000117041	ENSGT00940000162967 #36
Artiodactyla	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Suina	ANCESTRAL SPECIES	29	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00950000182922.a.a.a.b.a.a.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Chacoan peccary	MODERN SPECIES	216	GPR12 (ENSCWAG00000018600) #9	ENSCWAG00000018581	USP12 (ENSCWAG00000018548) #10	RPL21 (ENSCWAG00000018513) ##11	RASL11A (ENSCWAG00000018481) #12	ENSCWAG00000018472	GTF3A (ENSCWAG00000018454) #13	MTIF3 (ENSCWAG00000018433) #14	LNX2 (ENSCWAG00000018415) #15	POLR1D (ENSCWAG00000018355) #16	GSX1 (ENSCWAG00000018331) #17	PDX1 (ENSCWAG00000018319) #18	CDX2 (ENSCWAG00000018265) #19	URAD (ENSCWAG00000018244)	FLT3 (ENSCWAG00000018108) #21	PAN3 (ENSCWAG00000018033) #22	FLT1 (ENSCWAG00000017867) #23	ENSCWAG00000017809	POMP (ENSCWAG00000017771) #24	SLC46A3 (ENSCWAG00000017732) #25	MTUS2 (ENSCWAG00000017501) #27	SLC7A1 (ENSCWAG00000017449) #28	UBL3 (ENSCWAG00000017400) #29	KATNAL1 (ENSCWAG00000017366) #30	HMGB1 (ENSCWAG00000017323) ##31	USPL1 (ENSCWAG00000017300) #32	ALOX5AP (ENSCWAG00000017261) #33	MEDAG (ENSCWAG00000017233) #34	TEX26 (ENSCWAG00000017184) #35	ENSCWAG00000017090 #36	HSPH1 (ENSCWAG00000016864) #37
Pig	MODERN SPECIES	2	WASF3 (ENSSSCG00000009300) #7	ENSSSCG00000042074	GPR12 (ENSSSCG00000009301) #9	USP12 (ENSSSCG00000009302) #10	ENSSSCG00000009303 ##11	RASL11A (ENSSSCG00000039890) #12	GTF3A (ENSSSCG00000009305) #13	MTIF3 (ENSSSCG00000037313) #14	LNX2 (ENSSSCG00000009308) #15	POLR1D (ENSSSCG00000009310) #16	GSX1 (ENSSSCG00000009313) #17	PDX1 (ENSSSCG00000055811) #18	CDX2 (ENSSSCG00000009317) #19	ENSSSCG00000009316 #20	FLT3 (ENSSSCG00000009314) #21	PAN3 (ENSSSCG00000009319) #22	FLT1 (ENSSSCG00000009320) #23	POMP (ENSSSCG00000037170) #24	SLC46A3 (ENSSSCG00000009322) #25	MTUS2 (ENSSSCG00000025996) #27	SLC7A1 (ENSSSCG00000029456) #28	ENSSSCG00000035992 #29	KATNAL1 (ENSSSCG00000009326) #30	ENSSSCG00000009327 ##31	USPL1 (ENSSSCG00000028065) #32	ALOX5AP (ENSSSCG00000009330) #33	MEDAG (ENSSSCG00000009331) #34	TEX26 (ENSSSCG00000046261) #35	ENSSSCG00000009333 #36	HSPH1 (ENSSSCG00000009334) #37	B3GLCT (ENSSSCG00000009335)
Artiodactyla_a	ANCESTRAL SPECIES	22	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Camelidae	ANCESTRAL SPECIES	14	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00940000158948.b
Alpaca	MODERN SPECIES	137															FLT3 (ENSVPAG00000006354) #21	PAN3 (ENSVPAG00000006357) #22	FLT1 (ENSVPAG00000006361) #23
Arabian camel	MODERN SPECIES	5	CDK8 (ENSCDRG00005021779)	WASF3 (ENSCDRG00005021785) #7	GPR12 (ENSCDRG00005021787) #9	USP12 (ENSCDRG00005021790) #10	ENSCDRG00005021795 #11	RASL11A (ENSCDRG00005021802) #12	GTF3A (ENSCDRG00005021807) #13	MTIF3 (ENSCDRG00005003341) #14	LNX2 (ENSCDRG00005003360) #15	POLR1D (ENSCDRG00005003401) #16	GSX1 (ENSCDRG00005003464) #17	PDX1 (ENSCDRG00005003496) #18	ENSCDRG00005003530 #19	ENSCDRG00005003574 #20	FLT3 (ENSCDRG00005003607) #21	PAN3 (ENSCDRG00005003669) #22	FLT1 (ENSCDRG00005003978) #23	POMP (ENSCDRG00005004772) #24	SLC46A3 (ENSCDRG00005004813) #25	ENSCDRG00005004864 #27	ENSCDRG00005004898 #27	SLC7A1 (ENSCDRG00005004941) #28	UBL3 (ENSCDRG00005005011) #29	KATNAL1 (ENSCDRG00005005025) #30	HMGB1 (ENSCDRG00005005045) ##31	USPL1 (ENSCDRG00005005085) #32	ALOX5AP (ENSCDRG00005005116) #33	MEDAG (ENSCDRG00005005141) #34	TEX26 (ENSCDRG00005005163) #35	HSPH1 (ENSCDRG00005005202) #37	B3GLCT (ENSCDRG00005005450)
Artiodactyla_b	ANCESTRAL SPECIES	22	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Cetacea	ANCESTRAL SPECIES	20	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00510000047760.j	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Odontoceti	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b.i #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00510000047760.j	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Odontoceti_a	ANCESTRAL SPECIES	24	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b.i #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00510000047760.j	ENSGT00950000183026.B.r #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Odontoceti_b	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b.i #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00510000047760.j	ENSGT00950000183026.B.r #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b.i #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00510000047760.j	ENSGT00950000183026.B.r #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Narwhal	MODERN SPECIES	315	WASF3 (ENSMMNG00015021063) #7	GPR12 (ENSMMNG00015021041) #9	USP12 (ENSMMNG00015021025) #10	ENSMMNG00015020992 #11	RASL11A (ENSMMNG00015020985) #12	ENSMMNG00015020968	GTF3A (ENSMMNG00015020949) #13	MTIF3 (ENSMMNG00015020934) #14	LNX2 (ENSMMNG00015020919) #15	ENSMMNG00015020896	GSX1 (ENSMMNG00015020877) #17	PDX1 (ENSMMNG00015020863) #18	CDX2 (ENSMMNG00015020842) #19	URAD (ENSMMNG00015020821)	FLT3 (ENSMMNG00015020792) #21	PAN3 (ENSMMNG00015020615) #22	FLT1 (ENSMMNG00015020525) #23	ENSMMNG00015020477 #24	SLC46A3 (ENSMMNG00015020455) #25	MTUS2 (ENSMMNG00015020336) #27	SLC7A1 (ENSMMNG00015020307) #28	UBL3 (ENSMMNG00015020289) #29	KATNAL1 (ENSMMNG00015020263) #30	HMGB1 (ENSMMNG00015020245) ##31	USPL1 (ENSMMNG00015020212) #32	ALOX5AP (ENSMMNG00015020175) #33	MEDAG (ENSMMNG00015020156) #34	HSPH1 (ENSMMNG00015020078) #37	B3GLCT (ENSMMNG00015019951)	RXFP2 (ENSMMNG00015019687)	FRY (ENSMMNG00015019379)
Beluga whale	MODERN SPECIES	29	WASF3 (ENSDLEG00000014723) #7	GPR12 (ENSDLEG00000014734) #9	USP12 (ENSDLEG00000014742) #10	RPL21 (ENSDLEG00000014757) #11	RASL11A (ENSDLEG00000014782) #12	GTF3A (ENSDLEG00000014795) #13	MTIF3 (ENSDLEG00000014809) #14	LNX2 (ENSDLEG00000014818) #15	POLR1D (ENSDLEG00000014833) #16	ENSDLEG00000014844	GSX1 (ENSDLEG00000014854) #17	PDX1 (ENSDLEG00000014860) #18	CDX2 (ENSDLEG00000014871) #19	ENSDLEG00000014887	FLT3 (ENSDLEG00000014957) #21	PAN3 (ENSDLEG00000015462) #22	FLT1 (ENSDLEG00000015551) #23	ENSDLEG00000015594 #24	SLC46A3 (ENSDLEG00000015606) #25	ENSDLEG00000015614	MTUS2 (ENSDLEG00000015621) #27	SLC7A1 (ENSDLEG00000015661) #28	UBL3 (ENSDLEG00000015684) #29	KATNAL1 (ENSDLEG00000015700) #30	HMGB1 (ENSDLEG00000005222) ##31	USPL1 (ENSDLEG00000005228) #32	ALOX5AP (ENSDLEG00000005233) #33	MEDAG (ENSDLEG00000005244) #34	ENSDLEG00000005251 #36	HSPH1 (ENSDLEG00000005268) #37	B3GLCT (ENSDLEG00000005311)
Vaquita	MODERN SPECIES	9	WASF3 (ENSPSNG00000009017) #7	ENSPSNG00000009063	GPR12 (ENSPSNG00000009076) #9	USP12 (ENSPSNG00000009102) #10	ENSPSNG00000009136 #11	RASL11A (ENSPSNG00000009220) #12	GTF3A (ENSPSNG00000009270) #13	MTIF3 (ENSPSNG00000009318) #14	LNX2 (ENSPSNG00000009360) #15	ENSPSNG00000009434 #16	GSX1 (ENSPSNG00000009508) #17	PDX1 (ENSPSNG00000009545) #18	CDX2 (ENSPSNG00000009587) #19	URAD (ENSPSNG00000009637)	FLT3 (ENSPSNG00000009789) #21	PAN3 (ENSPSNG00000010591) #22	FLT1 (ENSPSNG00000010996) #23	ENSPSNG00000011404	ENSPSNG00000011451 #24	SLC46A3 (ENSPSNG00000011519) #25	ENSPSNG00000011610	ENSPSNG00000011712 #27	SLC7A1 (ENSPSNG00000011868) #28	UBL3 (ENSPSNG00000011923) #29	KATNAL1 (ENSPSNG00000011976) #30	HMGB1 (ENSPSNG00000012042) ##31	USPL1 (ENSPSNG00000012125) #32	ALOX5AP (ENSPSNG00000012197) #33	ENSPSNG00000011745	MEDAG (ENSPSNG00000011804) #34	HSPH1 (ENSPSNG00000011882) #37
Dolphin	MODERN SPECIES	632													PDX1 (ENSTTRG00000002811) #18	URAD (ENSTTRG00000002812)	FLT3 (ENSTTRG00000002813) #21	PAN3 (ENSTTRG00000002814) #22
Sperm whale	MODERN SPECIES	4	WASF3 (ENSPCTG00005012829) #7	GPR12 (ENSPCTG00005012894) #9	ENSPCTG00005012908	USP12 (ENSPCTG00005012963) #10	RPL21 (ENSPCTG00005013013) #11	RASL11A (ENSPCTG00005013101) #12	GTF3A (ENSPCTG00005013180) #13	MTIF3 (ENSPCTG00005013236) #14	LNX2 (ENSPCTG00005013292) #15	POLR1D (ENSPCTG00005013390) #16	GSX1 (ENSPCTG00005013569) #17	PDX1 (ENSPCTG00005013620) #18	CDX2 (ENSPCTG00005013676) #19	ENSPCTG00005013732	FLT3 (ENSPCTG00005013790) #21	PAN3 (ENSPCTG00005014160) #22	FLT1 (ENSPCTG00005014294) #23	POMP (ENSPCTG00005014527) #24	SLC46A3 (ENSPCTG00005014585) #25	ENSPCTG00005014618	MTUS2 (ENSPCTG00005014659) #27	SLC7A1 (ENSPCTG00005014850) #28	UBL3 (ENSPCTG00005014919) #29	KATNAL1 (ENSPCTG00005014985) #30	HMGB1 (ENSPCTG00005015034) ##31	USPL1 (ENSPCTG00005015111) #32	ALOX5AP (ENSPCTG00005015171) #33	MEDAG (ENSPCTG00005015216) #34	TEX26 (ENSPCTG00005015295) #35	HSPH1 (ENSPCTG00005015496) #37	B3GLCT (ENSPCTG00005016496)
Blue whale	MODERN SPECIES	9	WASF3 (ENSBMSG00010014112) #7	GPR12 (ENSBMSG00010014207) #9	USP12 (ENSBMSG00010014225) #10	ENSBMSG00010014255 #11	RASL11A (ENSBMSG00010014298) #12	ENSBMSG00010014311	GTF3A (ENSBMSG00010014329) #13	MTIF3 (ENSBMSG00010014375) #14	LNX2 (ENSBMSG00010014414) #15	ENSBMSG00010014466 #16	GSX1 (ENSBMSG00010014529) #17	PDX1 (ENSBMSG00010014538) #18	CDX2 (ENSBMSG00010014566) #19	URAD (ENSBMSG00010014592)	FLT3 (ENSBMSG00010014623) #21	PAN3 (ENSBMSG00010014764) #22	FLT1 (ENSBMSG00010014949) #23	ENSBMSG00010015155 #24	SLC46A3 (ENSBMSG00010015191) #25	ENSBMSG00010015221	ENSBMSG00010015247 #27	SLC7A1 (ENSBMSG00010015357) #28	UBL3 (ENSBMSG00010015451) #29	KATNAL1 (ENSBMSG00010015496) #30	HMGB1 (ENSBMSG00010015522) ##31	USPL1 (ENSBMSG00010015554) #32	ALOX5AP (ENSBMSG00010015580) #33	MEDAG (ENSBMSG00010015612) #34	TEX26 (ENSBMSG00010015652) #35	ENSBMSG00010015688 #36	HSPH1 (ENSBMSG00010015771) #37
Pecora	ANCESTRAL SPECIES	23	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Yarkand deer	MODERN SPECIES	23	GPR12 (ENSCHYG00000019276) #9	USP12 (ENSCHYG00000019156) #10	ENSCHYG00000019062 #11	RASL11A (ENSCHYG00000019009) #12	ENSCHYG00000018814 #13	MTIF3 (ENSCHYG00000018756) #14	LNX2 (ENSCHYG00000018648) #15	ENSCHYG00000018627	ENSCHYG00000018475 #16	GSX1 (ENSCHYG00000018439) #17	PDX1 (ENSCHYG00000018394) #18	CDX2 (ENSCHYG00000018350) #19	URAD (ENSCHYG00000018294)	FLT3 (ENSCHYG00000017983) #21	ENSCHYG00000017919	PAN3 (ENSCHYG00000017249) #22	FLT1 (ENSCHYG00000016765) #23	ENSCHYG00000016696	ENSCHYG00000016630 #24	SLC46A3 (ENSCHYG00000016561) #25	MTUS2 (ENSCHYG00000016049) #27	SLC7A1 (ENSCHYG00000015804) #28	UBL3 (ENSCHYG00000015723) #29	KATNAL1 (ENSCHYG00000015536) #30	ENSCHYG00000015436 ##31	USPL1 (ENSCHYG00000015344) #32	ALOX5AP (ENSCHYG00000015250) #33	ENSCHYG00000015226	MEDAG (ENSCHYG00000015182) #34	TEX26 (ENSCHYG00000015069) #35	ENSCHYG00000014786 #36
Percora_a	ANCESTRAL SPECIES	25	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Siberian musk deer	MODERN SPECIES	18	WASF3 (ENSMMSG00000003196) #7	GPR12 (ENSMMSG00000003186) #9	USP12 (ENSMMSG00000003167) #10	ENSMMSG00000003141 #11	RASL11A (ENSMMSG00000003132) #12	ENSMMSG00000003107 #13	MTIF3 (ENSMMSG00000003094) #14	LNX2 (ENSMMSG00000003075) #15	POLR1D (ENSMMSG00000003040) #16	GSX1 (ENSMMSG00000003020) #17	ENSMMSG00000003007	PDX1 (ENSMMSG00000002992) #18	CDX2 (ENSMMSG00000002973) #19	URAD (ENSMMSG00000002960)	FLT3 (ENSMMSG00000002901) #21	PAN3 (ENSMMSG00000002825) #22	FLT1 (ENSMMSG00000002716) #23	ENSMMSG00000002681 #24	SLC46A3 (ENSMMSG00000002652) #25	MTUS2 (ENSMMSG00000002573) #27	SLC7A1 (ENSMMSG00000002527) #28	UBL3 (ENSMMSG00000002504) #29	KATNAL1 (ENSMMSG00000002485) #30	ENSMMSG00000002453 ##31	USPL1 (ENSMMSG00000002424) #32	ALOX5AP (ENSMMSG00000002405) #33	MEDAG (ENSMMSG00000002386) #34	TEX26 (ENSMMSG00000002369) #35	HSPH1 (ENSMMSG00000002127) #37	B3GLCT (ENSMMSG00000002053)	RXFP2 (ENSMMSG00000001942)
Bovidae	ANCESTRAL SPECIES	25	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f.e.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Bovinae	ANCESTRAL SPECIES	29	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f.e.a.a #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Bos	ANCESTRAL SPECIES	28	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f.e.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Bos_b	ANCESTRAL SPECIES	33	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f.e.a.a #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT01100000263481.n.a.b.b.a.b.b.a.a.b.a.b	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Hybrid Bos Indicus	MODERN SPECIES	3	CDK8 (ENSBIXG00005009401)	WASF3 (ENSBIXG00005009436) #7	GPR12 (ENSBIXG00005005366) #9	USP12 (ENSBIXG00005000510) #10	ENSBIXG00005009506 #11	RASL11A (ENSBIXG00005009524) #12	MTIF3 (ENSBIXG00005000533) #14	ENSBIXG00005009581 #13	LNX2 (ENSBIXG00005009616) #15	POLR1D (ENSBIXG00005009666) #16	GSX1 (ENSBIXG00005009693) #17	PDX1 (ENSBIXG00005005368) #18	CDX2 (ENSBIXG00005000565) #19	ENSBIXG00005000568 #20	FLT3 (ENSBIXG00005005466) #21	PAN3 (ENSBIXG00005005472) #22	FLT1 (ENSBIXG00005010159) #23	POMP (ENSBIXG00005010225) #24	SLC46A3 (ENSBIXG00005000810) #25	MTUS2 (ENSBIXG00005010291) #27	SLC7A1 (ENSBIXG00005006772) #28	UBL3 (ENSBIXG00005010348) #29	ENSBIXG00005000793	KATNAL1 (ENSBIXG00005000876) #30	ENSBIXG00005006774	ENSBIXG00005010515 ##31	USPL1 (ENSBIXG00005010560) #32	ALOX5AP (ENSBIXG00005000697) #33	MEDAG (ENSBIXG00005010602) #34	TEX26 (ENSBIXG00005010612) #35	ENSBIXG00005000923 #36
Cow	MODERN SPECIES	3	WASF3 (ENSBTAG00000014619) #7	GPR12 (ENSBTAG00000010769) #9	USP12 (ENSBTAG00000017179) #10	RPL21 (ENSBTAG00000001648) #11	RASL11A (ENSBTAG00000005244) #12	GTF3A (ENSBTAG00000012600) #13	MTIF3 (ENSBTAG00000020530) #14	LNX2 (ENSBTAG00000015614) #15	POLR1D (ENSBTAG00000008642) #16	ENSBTAG00000048386	GSX1 (ENSBTAG00000009166) #17	PDX1 (ENSBTAG00000010690) #18	CDX2 (ENSBTAG00000001819) #19	URAD (ENSBTAG00000013819) #20	FLT3 (ENSBTAG00000018572) #21	PAN3 (ENSBTAG00000009912) #22	FLT1 (ENSBTAG00000016915) #23	POMP (ENSBTAG00000014024) #24	MTUS2 (ENSBTAG00000001094) #27	SLC7A1 (ENSBTAG00000018577) #28	UBL3 (ENSBTAG00000012170) #29	ENSBTAG00000052411	KATNAL1 (ENSBTAG00000009340) #30	HMGB1 (ENSBTAG00000018103) ##31	USPL1 (ENSBTAG00000001178) #32	ALOX5AP (ENSBTAG00000013201) #33	MEDAG (ENSBTAG00000008271) #34	TEX26 (ENSBTAG00000033386) #35	ENSBTAG00000016052 #36	HSPH1 (ENSBTAG00000005012) #37	B3GLCT (ENSBTAG00000033412)
Bos_a	ANCESTRAL SPECIES	19	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f.e.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00940000154361.A #17	ENSGT00390000003643	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Domestic yak	MODERN SPECIES	6	ENSBGRG00000004746	USP12 (ENSBGRG00000004775) #10	ENSBGRG00000004884 #11	RASL11A (ENSBGRG00000004923) #12	GTF3A (ENSBGRG00000004973) #13	MTIF3 (ENSBGRG00000005098) #14	LNX2 (ENSBGRG00000005122) #15	ENSBGRG00000005177	GSX1 (ENSBGRG00000005224) #17	ENSBGRG00000005241	ENSBGRG00000005252	PDX1 (ENSBGRG00000005259) #18	CDX2 (ENSBGRG00000005271) #19	ENSBGRG00000005297 #20	FLT3 (ENSBGRG00000005369) #21	PAN3 (ENSBGRG00000005813) #22	ENSBGRG00000006167	ENSBGRG00000006327 #23	POMP (ENSBGRG00000006553) #24	SLC46A3 (ENSBGRG00000006624) #25	MTUS2 (ENSBGRG00000006670) #27	SLC7A1 (ENSBGRG00000006751) #28	UBL3 (ENSBGRG00000006856) #29	KATNAL1 (ENSBGRG00000006924) #30	ENSBGRG00000007092 ##31	ENSBGRG00000007221	USPL1 (ENSBGRG00000007239) #32	ALOX5AP (ENSBGRG00000007328) #33	MEDAG (ENSBGRG00000007441) #34	TEX26 (ENSBGRG00000007537) #35	ENSBGRG00000007607 #36
Wild yak	MODERN SPECIES	1371															FLT3 (ENSBMUG00000023185) #21	PAN3 (ENSBMUG00000023150) #22	FLT1 (ENSBMUG00000023081) #23	POMP (ENSBMUG00000023007) #24	SLC46A3 (ENSBMUG00000023002) #25	MTUS2 (ENSBMUG00000022991) #27	SLC7A1 (ENSBMUG00000022964) #28	UBL3 (ENSBMUG00000022941) #29	KATNAL1 (ENSBMUG00000022930) #30	HMGB1 (ENSBMUG00000022917) ##31	USPL1 (ENSBMUG00000022880) #32	ALOX5AP (ENSBMUG00000022869) #33	MEDAG (ENSBMUG00000022857) #34	TEX26 (ENSBMUG00000022841) #35	ENSBMUG00000022823 #36	HSPH1 (ENSBMUG00000022797) #37	ENSBMUG00000022779
American bison	MODERN SPECIES	3213	WASF3 (ENSBBBG00000002463) #7	GPR12 (ENSBBBG00000012732) #9	USP12 (ENSBBBG00000002455) #10	ENSBBBG00000012692 #11	RASL11A (ENSBBBG00000007545) #12	GTF3A (ENSBBBG00000012669) #13	ENSBBBG00000012643 #14	LNX2 (ENSBBBG00000012639) #15	POLR1D (ENSBBBG00000012618) #16	ENSBBBG00000012613	GSX1 (ENSBBBG00000001841) #17	PDX1 (ENSBBBG00000001839) #18	ENSBBBG00000012601 #19	URAD (ENSBBBG00000008107)	FLT3 (ENSBBBG00000012586) #21	PAN3 (ENSBBBG00000012554) #22	FLT1 (ENSBBBG00000012485) #23	POMP (ENSBBBG00000002357) #24	SLC46A3 (ENSBBBG00000012388) #25
Caprinae	ANCESTRAL SPECIES	28	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f.e.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424.g #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643.k	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Goat	MODERN SPECIES	3	WASF3 (ENSCHIG00000017657) #7	GPR12 (ENSCHIG00000007944) #9	USP12 (ENSCHIG00000006817) #10	RPL21 (ENSCHIG00000021720) #11	RASL11A (ENSCHIG00000016902) #12	ENSCHIG00000021040 #13	ENSCHIG00000026996 #14	LNX2 (ENSCHIG00000024542) #15	POLR1D (ENSCHIG00000021910) #16	ENSCHIG00000014902	GSX1 (ENSCHIG00000026107) #17	PDX1 (ENSCHIG00000016212) #18	CDX2 (ENSCHIG00000024755) #19	ENSCHIG00000015696 #20	FLT3 (ENSCHIG00000006089) #21	PAN3 (ENSCHIG00000010876) #22	FLT1 (ENSCHIG00000019587) #23	ENSCHIG00000007021 #24	SLC46A3 (ENSCHIG00000006252) #25	MTUS2 (ENSCHIG00000014951) #27	SLC7A1 (ENSCHIG00000017131) #28	UBL3 (ENSCHIG00000005881) #29	KATNAL1 (ENSCHIG00000011417) #30	HMGB1 (ENSCHIG00000018473) ##31	USPL1 (ENSCHIG00000025535) #32	ALOX5AP (ENSCHIG00000020532) #33	MEDAG (ENSCHIG00000019733) #34	TEX26 (ENSCHIG00000013376) #35	HSPH1 (ENSCHIG00000003518) #37	B3GLCT (ENSCHIG00000016248)	RXFP2 (ENSCHIG00000007689)
Rambouillet Sheep	MODERN SPECIES	1	GPR12 (ENSOARG00020012619) #9	USP12 (ENSOARG00020012488) #10	ENSOARG00020012435	ENSOARG00020012335 #11	RASL11A (ENSOARG00020012287) #12	ENSOARG00020012160 #13	ENSOARG00020012106 #13	MTIF3 (ENSOARG00020012058) #14	LNX2 (ENSOARG00020012002) #15	POLR1D (ENSOARG00020011900) #16	GSX1 (ENSOARG00020011857) #17	PDX1 (ENSOARG00020011821) #18	CDX2 (ENSOARG00020011783) #19	URAD (ENSOARG00020011747)	FLT3 (ENSOARG00020011519) #21	PAN3 (ENSOARG00020010540) #22	FLT1 (ENSOARG00020010103) #23	ENSOARG00020010005 #24	SLC46A3 (ENSOARG00020009919) #25	ENSOARG00020009812 #27	SLC7A1 (ENSOARG00020009646) #28	UBL3 (ENSOARG00020009591) #29	KATNAL1 (ENSOARG00020009464) #30	HMGB1 (ENSOARG00020009396) ##31	ALOX5AP (ENSOARG00020009284) #33	MEDAG (ENSOARG00020009224) #34	TEX26 (ENSOARG00020009149) #35	ENSOARG00020008926 #36	HSPH1 (ENSOARG00020008491) #37	B3GLCT (ENSOARG00020008264)	ENSOARG00020008205
Laurasiatheria_b	ANCESTRAL SPECIES	21	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00740000117041	ENSGT00940000162967 #36
Laurasiatheria_c	ANCESTRAL SPECIES	22	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Equus	ANCESTRAL SPECIES	26	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Donkey	MODERN SPECIES	29	GPR12 (ENSEASG00005035884) #9	USP12 (ENSEASG00005022511) #10	ENSEASG00005022501 ##11	RASL11A (ENSEASG00005034471) #12	ENSEASG00005022495 #13	MTIF3 (ENSEASG00005022492) #14	LNX2 (ENSEASG00005022490) #15	POLR1D (ENSEASG00005022487) #16	ENSEASG00005035501	GSX1 (ENSEASG00005022483) #17	PDX1 (ENSEASG00005022482) #18	CDX2 (ENSEASG00005022479) #19	ENSEASG00005028208 #20	ENSEASG00005003450	FLT3 (ENSEASG00005022471) #21	PAN3 (ENSEASG00005022467) #22	ENSEASG00005029804	ENSEASG00005022461 #23	ENSEASG00005029421 #24	SLC46A3 (ENSEASG00005022457) #25	MTUS2 (ENSEASG00005022449) #27	SLC7A1 (ENSEASG00005022432) #28	UBL3 (ENSEASG00005022423) #29	KATNAL1 (ENSEASG00005022416) #30	HMGB1 (ENSEASG00005032345) ##31	USPL1 (ENSEASG00005022400) #32	ALOX5AP (ENSEASG00005022395) #33	MEDAG (ENSEASG00005022391) #34	TEX26 (ENSEASG00005022387) #35	ENSEASG00005022381 #36	HSPH1 (ENSEASG00005022374) #37
Horse	MODERN SPECIES	8	WASF3 (ENSECAG00000000050) #7	GPR12 (ENSECAG00000059623) #9	ENSECAG00000036907	ENSECAG00000045376	USP12 (ENSECAG00000006779) #10	RASL11A (ENSECAG00000012858) #12	GTF3A (ENSECAG00000014803) #13	MTIF3 (ENSECAG00000016697) #14	LNX2 (ENSECAG00000017219) #15	ENSECAG00000021095	GSX1 (ENSECAG00000035168) #17	PDX1 (ENSECAG00000000679) #18	CDX2 (ENSECAG00000027754) #19	ENSECAG00000002049 #20	FLT3 (ENSECAG00000002171) #21	PAN3 (ENSECAG00000014810) #22	FLT1 (ENSECAG00000021700)	ENSECAG00000049171 #23	POMP (ENSECAG00000011951) #24	ENSECAG00000048907	SLC46A3 (ENSECAG00000011432) #25	MTUS2 (ENSECAG00000013935) #27	SLC7A1 (ENSECAG00000015413) #28	UBL3 (ENSECAG00000001318) #29	KATNAL1 (ENSECAG00000004830) #30	HMGB1 (ENSECAG00000008439) #31	USPL1 (ENSECAG00000011889) #32	ALOX5AP (ENSECAG00000012371) #33	MEDAG (ENSECAG00000014702) #34	TEX26 (ENSECAG00000015300) #35	ENSECAG00000016853 #36
Chiroptera	ANCESTRAL SPECIES	66	ENSGT00940000157104.m.a	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00940000158948.b
Megabat	MODERN SPECIES	1410																PAN3 (ENSPVAG00000001113) #22	FLT1 (ENSPVAG00000001114) #23
Microchiroptera	ANCESTRAL SPECIES	46	ENSGT00940000157104.m.a	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b.f #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00940000158948.b
Greater horseshoe bat	MODERN SPECIES	22	ENSRFEG00010003754	GPR12 (ENSRFEG00010003761) #9	USP12 (ENSRFEG00010003775) #10	ENSRFEG00010003789 ##11	RASL11A (ENSRFEG00010003821) #12	GTF3A (ENSRFEG00010003845) #13	MTIF3 (ENSRFEG00010003873) #14	LNX2 (ENSRFEG00010003884) #15	ENSRFEG00010003922 #16	ENSRFEG00010003942	GSX1 (ENSRFEG00010003946) #17	PDX1 (ENSRFEG00010003956) #18	CDX2 (ENSRFEG00010003965) #19	ENSRFEG00010003975 #20	FLT3 (ENSRFEG00010004003) #21	PAN3 (ENSRFEG00010004077) #22	FLT1 (ENSRFEG00010004193) #23	ENSRFEG00010004318 #24	SLC46A3 (ENSRFEG00010004332) #25	MTUS2 (ENSRFEG00010004361) #27	ENSRFEG00010004420 ##31	SLC7A1 (ENSRFEG00010000293) #28	UBL3 (ENSRFEG00010000414) #29	KATNAL1 (ENSRFEG00010000476) #30	HMGB1 (ENSRFEG00010000531) ##31	USPL1 (ENSRFEG00010000567) #32	ALOX5AP (ENSRFEG00010000601) #33	MEDAG (ENSRFEG00010000622) #34	TEX26 (ENSRFEG00010000643) #35	HSPH1 (ENSRFEG00010000709) #37	B3GLCT (ENSRFEG00010000860)
Microbat	MODERN SPECIES	1164				GPR12 (ENSMLUG00000002365) #9	USP12 (ENSMLUG00000007510) #10	ENSMLUG00000010093 #11	RASL11A (ENSMLUG00000016335) #12	GTF3A (ENSMLUG00000002158) #13	MTIF3 (ENSMLUG00000002161) #14	LNX2 (ENSMLUG00000010946) #15	ENSMLUG00000025151	PDX1 (ENSMLUG00000010639) #18	CDX2 (ENSMLUG00000002563) #19	ENSMLUG00000002576 #20	FLT3 (ENSMLUG00000002582) #21	PAN3 (ENSMLUG00000004348) #22	FLT1 (ENSMLUG00000004358) #23	ENSMLUG00000010322 #24	SLC46A3 (ENSMLUG00000006699) #25
Carnivora	ANCESTRAL SPECIES	23	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00740000117041	ENSGT00940000162967 #36
Felidae	ANCESTRAL SPECIES	23	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Panthera	ANCESTRAL SPECIES	21	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00950000182922.a.a.a.b.a.a.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Panthera_a	ANCESTRAL SPECIES	23	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00950000182922.a.a.a.b.a.a.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
leopard	MODERN SPECIES	14	CDK8 (ENSPPRG00000023432)	WASF3 (ENSPPRG00000022988) #7	GPR12 (ENSPPRG00000017596) #9	USP12 (ENSPPRG00000000510) #10	ENSPPRG00000001012 ##11	RASL11A (ENSPPRG00000001350) #12	GTF3A (ENSPPRG00000002368) #13	MTIF3 (ENSPPRG00000002497) #14	LNX2 (ENSPPRG00000002783) #15	POLR1D (ENSPPRG00000003381) #16	GSX1 (ENSPPRG00000004333) #17	PDX1 (ENSPPRG00000004534) #18	CDX2 (ENSPPRG00000004823) #19	ENSPPRG00000005097 #20	FLT3 (ENSPPRG00000005326) #21	PAN3 (ENSPPRG00000008505) #22	ENSPPRG00000011363	ENSPPRG00000013104 #23	POMP (ENSPPRG00000013840) #24	SLC46A3 (ENSPPRG00000015693) #25	ENSPPRG00000016401 #27	SLC7A1 (ENSPPRG00000017628) #28	UBL3 (ENSPPRG00000019662) #29	KATNAL1 (ENSPPRG00000022045) #30	HMGB1 (ENSPPRG00000022869) ##31	USPL1 (ENSPPRG00000000053) #32	ALOX5AP (ENSPPRG00000000293) #33	MEDAG (ENSPPRG00000000734) #34	TEX26 (ENSPPRG00000001047) #35	ENSPPRG00000002151 #36	HSPH1 (ENSPPRG00000005057) #37
lion	MODERN SPECIES	1	CDK8 (ENSPLOG00000004108)	WASF3 (ENSPLOG00000004088) #7	GPR12 (ENSPLOG00000004075) #9	USP12 (ENSPLOG00000004064) #10	ENSPLOG00000021394 ##11	RASL11A (ENSPLOG00000021369) #12	GTF3A (ENSPLOG00000021339) #13	MTIF3 (ENSPLOG00000021318) #14	LNX2 (ENSPLOG00000021288) #15	ENSPLOG00000021249	GSX1 (ENSPLOG00000021227) #17	PDX1 (ENSPLOG00000021216) #18	CDX2 (ENSPLOG00000021193) #19	URAD (ENSPLOG00000021175)	FLT3 (ENSPLOG00000021081) #21	PAN3 (ENSPLOG00000020895) #22	FLT1 (ENSPLOG00000020410) #23	POMP (ENSPLOG00000020240) #24	SLC46A3 (ENSPLOG00000020203) #25	ENSPLOG00000020066 #27	SLC7A1 (ENSPLOG00000020023) #28	UBL3 (ENSPLOG00000019992) #29	KATNAL1 (ENSPLOG00000019942) #30	ENSPLOG00000019888 ##31	USPL1 (ENSPLOG00000019841) #32	ALOX5AP (ENSPLOG00000019807) #33	MEDAG (ENSPLOG00000019748) #34	TEX26 (ENSPLOG00000019557) #35	ENSPLOG00000019458 #36	HSPH1 (ENSPLOG00000019185) #37	B3GLCT (ENSPLOG00000019047)
Tiger	MODERN SPECIES	38	CDK8 (ENSPTIG00000021301)	WASF3 (ENSPTIG00000020649) #7	GPR12 (ENSPTIG00000005107) #9	USP12 (ENSPTIG00000020368) #10	ENSPTIG00000020228 ##11	RASL11A (ENSPTIG00000019926) #12	GTF3A (ENSPTIG00000018958) #13	MTIF3 (ENSPTIG00000018642) #14	LNX2 (ENSPTIG00000018500) #15	POLR1D (ENSPTIG00000018137) #16	ENSPTIG00000017320	GSX1 (ENSPTIG00000016369) #17	ENSPTIG00000016324	ENSPTIG00000014998 #19	FLT3 (ENSPTIG00000013522) #21	PAN3 (ENSPTIG00000011675) #22	ENSPTIG00000010147	ENSPTIG00000007575 #23	POMP (ENSPTIG00000007181) #24	SLC46A3 (ENSPTIG00000005724) #25	ENSPTIG00000001385 #27	SLC7A1 (ENSPTIG00000021015) #28	UBL3 (ENSPTIG00000020762) #29	KATNAL1 (ENSPTIG00000020391) #30	ENSPTIG00000020002 ##31	USPL1 (ENSPTIG00000019771) #32	ALOX5AP (ENSPTIG00000019272) #33	MEDAG (ENSPTIG00000018319) #34	TEX26 (ENSPTIG00000017363) #35	ENSPTIG00000016067 #36	HSPH1 (ENSPTIG00000013145) #37
Cat	MODERN SPECIES		CDK8 (ENSFCAG00000027073)	WASF3 (ENSFCAG00000009474) #7	GPR12 (ENSFCAG00000014524) #9	USP12 (ENSFCAG00000026620) #10	ENSFCAG00000006750 ##11	RASL11A (ENSFCAG00000006749) #12	GTF3A (ENSFCAG00000006982) #13	MTIF3 (ENSFCAG00000006985) #14	LNX2 (ENSFCAG00000011821) #15	ENSFCAG00000030162	GSX1 (ENSFCAG00000026793) #17	PDX1 (ENSFCAG00000034557) #18	CDX2 (ENSFCAG00000026699) #19	ENSFCAG00000036126 #20	FLT3 (ENSFCAG00000004539) #21	PAN3 (ENSFCAG00000018643) #22	FLT1 (ENSFCAG00000013299) #23	POMP (ENSFCAG00000008235) #24	SLC46A3 (ENSFCAG00000008236) #25	MTUS2 (ENSFCAG00000014322) #27	SLC7A1 (ENSFCAG00000014326) #28	UBL3 (ENSFCAG00000027217) #29	KATNAL1 (ENSFCAG00000032001) #30	HMGB1 (ENSFCAG00000000200) ##31	USPL1 (ENSFCAG00000022053) #32	ALOX5AP (ENSFCAG00000037195) #33	MEDAG (ENSFCAG00000007544) #34	TEX26 (ENSFCAG00000024146) #35	ENSFCAG00000031325 #36	HSPH1 (ENSFCAG00000007547) #37	B3GLCT (ENSFCAG00000018185)
Caniformia	ANCESTRAL SPECIES	24	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00740000117041	ENSGT00940000162967 #36
Canidae	ANCESTRAL SPECIES	31	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000153229.A.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.a.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00940000153425.a.a.b.a	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36
Canis_lupus	ANCESTRAL SPECIES	18	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00390000011067.A.ib.b	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.a.b.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00940000153425.a.a.b.a	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36
Dog	MODERN SPECIES	17	GPR12 (ENSCAFG00845026068) #9	ENSCAFG00845026031	USP12 (ENSCAFG00845025960) #10	RPL21 (ENSCAFG00845025858) ##11	RASL11A (ENSCAFG00845025821) #12	GTF3A (ENSCAFG00845025723) #13	MTIF3 (ENSCAFG00845025671) #14	LNX2 (ENSCAFG00845025569) #15	POLR1D (ENSCAFG00845025499)	GSX1 (ENSCAFG00845025440) #17	PDX1 (ENSCAFG00845025401) #18	CDX2 (ENSCAFG00845025357) #19	ENSCAFG00845025288 #20	ENSCAFG00845025235	FLT3 (ENSCAFG00845024412) #21	PAN3 (ENSCAFG00845023866) #22	FLT1 (ENSCAFG00845023188) #23	POMP (ENSCAFG00845022887) #24	SLC46A3 (ENSCAFG00845022832) #25	MTUS2 (ENSCAFG00845022435) #27	SLC7A1 (ENSCAFG00845022314) #28	ENSCAFG00845022280	UBL3 (ENSCAFG00845022214) #29	ENSCAFG00845022193	KATNAL1 (ENSCAFG00845022093) #30	HMGB1 (ENSCAFG00845021967) ##31	USPL1 (ENSCAFG00845021869) #32	ALOX5AP (ENSCAFG00845021804) #33	MEDAG (ENSCAFG00845021735) #34	TEX26 (ENSCAFG00845021671) #35	ENSCAFG00845021368 #36
Dingo	MODERN SPECIES	304	USP12 (ENSCAFG00020025315) #10	ENSCAFG00020025313 ##11	RASL11A (ENSCAFG00020025312) #12	ENSCAFG00020025311	ENSCAFG00020025308 #13	ENSCAFG00020025306 #13	MTIF3 (ENSCAFG00020025304) #14	LNX2 (ENSCAFG00020025302) #15	ENSCAFG00020025301 #16	GSX1 (ENSCAFG00020025299) #17	PDX1 (ENSCAFG00020025298) #18	CDX2 (ENSCAFG00020025296) #19	ENSCAFG00020025291 #20	ENSCAFG00020025290	FLT3 (ENSCAFG00020025240) #21	PAN3 (ENSCAFG00020025181) #22	ENSCAFG00020025175	ENSCAFG00020025171 #23	ENSCAFG00020025170	ENSCAFG00020025169	SLC46A3 (ENSCAFG00020025168) #25	MTUS2 (ENSCAFG00020025161) #27	SLC7A1 (ENSCAFG00020025151) #28	ENSCAFG00020025149	UBL3 (ENSCAFG00020025147) #29	ENSCAFG00020025145	KATNAL1 (ENSCAFG00020025138) #30	ENSCAFG00020025137	ENSCAFG00020025133	ENSCAFG00020025123 ##31	USPL1 (ENSCAFG00020025117) #32
Red fox	MODERN SPECIES	22	GPR12 (ENSVVUG00000009138) #9	USP12 (ENSVVUG00000009179) #10	RPL21 (ENSVVUG00000009183) ##11	RASL11A (ENSVVUG00000009191) #12	GTF3A (ENSVVUG00000009197) #13	MTIF3 (ENSVVUG00000009207) #14	LNX2 (ENSVVUG00000009209) #15	POLR1D (ENSVVUG00000009216) #16	ENSVVUG00000009220	GSX1 (ENSVVUG00000009230) #17	ENSVVUG00000009233	PDX1 (ENSVVUG00000009234) #18	CDX2 (ENSVVUG00000009237) #19	FLT3 (ENSVVUG00000009247) #21	ENSVVUG00000009307	PAN3 (ENSVVUG00000009313) #22	FLT1 (ENSVVUG00000009356) #23	POMP (ENSVVUG00000009398) #24	SLC46A3 (ENSVVUG00000009403) #25	MTUS2 (ENSVVUG00000009413) #27	SLC7A1 (ENSVVUG00000009439) #28	ENSVVUG00000009450	UBL3 (ENSVVUG00000009455) #29	KATNAL1 (ENSVVUG00000009499) #30	HMGB1 (ENSVVUG00000009534) ##31	USPL1 (ENSVVUG00000009708) #32	ALOX5AP (ENSVVUG00000009718) #33	MEDAG (ENSVVUG00000009731) #34	TEX26 (ENSVVUG00000009744) #35	ENSVVUG00000009779 #36	HSPH1 (ENSVVUG00000010061) #37
Caniformia_b	ANCESTRAL SPECIES	26	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.a.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00740000117041	ENSGT00940000162967 #36
Mustelinae	ANCESTRAL SPECIES	109										ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00740000117041	ENSGT00940000162967 #36	ENSGT00940000159635 #37
American mink	MODERN SPECIES	346										ENSNVIG00000002786	GSX1 (ENSNVIG00000002846) #17	PDX1 (ENSNVIG00000002855) #18	CDX2 (ENSNVIG00000002864) #19	URAD (ENSNVIG00000002869)	FLT3 (ENSNVIG00000002880) #21	PAN3 (ENSNVIG00000002913) #22	FLT1 (ENSNVIG00000002982) #23	ENSNVIG00000003156 #24	S46A3 (ENSNVIG00000003179) #25
Ferret	MODERN SPECIES	364										ENSMPUG00000005164	GSX1 (ENSMPUG00000005153) #17	PDX1 (ENSMPUG00000005147) #18	CDX2 (ENSMPUG00000005092) #19	ENSMPUG00000005088 #20	FLT3 (ENSMPUG00000005073) #21	PAN3 (ENSMPUG00000004987) #22	FLT1 (ENSMPUG00000004699) #23	POMP (ENSMPUG00000004690) #24	SLC46A3 (ENSMPUG00000004680) #25	ENSMPUG00000004676	MTUS2 (ENSMPUG00000004661) #27	SLC7A1 (ENSMPUG00000004649) #28	UBL3 (ENSMPUG00000004638) #29	ENSMPUG00000004620	KATNAL1 (ENSMPUG00000004610) #30	HMGB1 (ENSMPUG00000004579) ##31	USPL1 (ENSMPUG00000004564) #32	ALOX5AP (ENSMPUG00000004556) #33	MEDAG (ENSMPUG00000004549) #34	TEX26 (ENSMPUG00000004539) #35	ENSMPUG00000004527
Ursidae	ANCESTRAL SPECIES	27	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.a.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Giant Panda	MODERN SPECIES	17	GPR12 (ENSAMEG00000019402) #9	ENSAMEG00000024690	USP12 (ENSAMEG00000001863) #10	RPL21 (ENSAMEG00000031074) ##11	RASL11A (ENSAMEG00000015812) #12	ENSAMEG00000029656	GTF3A (ENSAMEG00000015824) #13	MTIF3 (ENSAMEG00000015841) #14	LNX2 (ENSAMEG00000015845) #15	ENSAMEG00000028974	GSX1 (ENSAMEG00000030161) #17	PDX1 (ENSAMEG00000025378) #18	CDX2 (ENSAMEG00000029013) #19	ENSAMEG00000031229 #20	FLT3 (ENSAMEG00000002354) #21	PAN3 (ENSAMEG00000002349) #22	FLT1 (ENSAMEG00000002209) #23	ENSAMEG00000008961 #24	SLC46A3 (ENSAMEG00000008953) #25	MTUS2 (ENSAMEG00000008934) #27	SLC7A1 (ENSAMEG00000008899) #28	UBL3 (ENSAMEG00000008894) #29	ENSAMEG00000008885 #30	ENSAMEG00000008873 #32	ALOX5AP (ENSAMEG00000023710) #33	MEDAG (ENSAMEG00000008847) #34	TEX26 (ENSAMEG00000008839) #35	ENSAMEG00000008833 #36	HSPH1 (ENSAMEG00000008784) #37	B3GLCT (ENSAMEG00000008757)	RXFP2 (ENSAMEG00000008702)
Ursus	ANCESTRAL SPECIES	57	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00940000158713 #23	ENSGT00390000010734.j.b #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000159635 #37	ENSGT00940000155499
American black bear	MODERN SPECIES	664																ENSUAMG00000023233 #22	FLT1 (ENSUAMG00000023232) #23
Polar bear	MODERN SPECIES	177	CDK8 (ENSUMAG00000016849)	WASF3 (ENSUMAG00000016859) #7	GPR12 (ENSUMAG00000016877) #9	USP12 (ENSUMAG00000016883) #10	ENSUMAG00000016901	ENSUMAG00000016903	ENSUMAG00000016908 ##11	RASL11A (ENSUMAG00000016927) #12	GTF3A (ENSUMAG00000016941) #13	MTIF3 (ENSUMAG00000016954) #14	LNX2 (ENSUMAG00000016959) #15	POLR1D (ENSUMAG00000016968) #16	ENSUMAG00000016971	ENSUMAG00000016976 #19	FLT3 (ENSUMAG00000016979) #21	PAN3 (ENSUMAG00000016986) #22	ENSUMAG00000017000	ENSUMAG00000017006 #23	POMP (ENSUMAG00000017026) #24	SLC46A3 (ENSUMAG00000017030) #25	ENSUMAG00000017046 #27	SLC7A1 (ENSUMAG00000017056) #28	UBL3 (ENSUMAG00000017145) #29	KATNAL1 (ENSUMAG00000017153) #30	ENSUMAG00000017165 ##31	USPL1 (ENSUMAG00000017198) #32	ENSUMAG00000017201 #33	MEDAG (ENSUMAG00000017210) #34	TEX26 (ENSUMAG00000017213) #35	HSPH1 (ENSUMAG00000017368) #37	B3GLCT (ENSUMAG00000017840)
Atlantogenata	ANCESTRAL SPECIES	27	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00740000117041	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Afrotheria	ANCESTRAL SPECIES	89	ENSGT00940000165049	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35
Tenrec	MODERN SPECIES	597																ENSETEG00000019591 #22
Afrotheria_a	ANCESTRAL SPECIES	90	ENSGT00940000165049	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.b #11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00390000003643	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.e.b.a.a.a ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35
Hyrax	MODERN SPECIES	3887																PAN3 (ENSPCAG00000001143) #22
Elephant	MODERN SPECIES	294	RNF6 (ENSLAFG00000029161)	CDK8 (ENSLAFG00000006771)	WASF3 (ENSLAFG00000018395) #7	GPR12 (ENSLAFG00000014464) #9	ENSLAFG00000028761	USP12 (ENSLAFG00000007202) #10	ENSLAFG00000003677 #11	RASL11A (ENSLAFG00000003673) #12	GTF3A (ENSLAFG00000027315) #13	MTIF3 (ENSLAFG00000015496) #14	LNX2 (ENSLAFG00000015044) #15	POLR1D (ENSLAFG00000032290) #16	ENSLAFG00000022071	CDX2 (ENSLAFG00000030146) #19	FLT3 (ENSLAFG00000015599) #21	PAN3 (ENSLAFG00000015614) #22	FLT1 (ENSLAFG00000015622) #23	POMP (ENSLAFG00000003665) #24	SLC46A3 (ENSLAFG00000009925) #25	ENSLAFG00000016168 #27	SLC7A1 (ENSLAFG00000016186) #28	UBL3 (ENSLAFG00000000781) #29	KATNAL1 (ENSLAFG00000003140) #30	HMGB1 (ENSLAFG00000000269) ##31	USPL1 (ENSLAFG00000007634) #32	ALOX5AP (ENSLAFG00000018481) #33	MEDAG (ENSLAFG00000018412) #34	TEX26 (ENSLAFG00000025765) #35	UBAC2 (ENSLAFG00000007662)	GPR18 (ENSLAFG00000007667)	GPR183 (ENSLAFG00000022160)
Xenarthra	ANCESTRAL SPECIES	208			ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00550000075160 #16	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144	ENSGT00970000194118
Sloth	MODERN SPECIES	4232																PAN3 (ENSCHOG00000011265) #22
Armadillo	MODERN SPECIES	1567	WASF3 (ENSDNOG00000002618) #7	GPR12 (ENSDNOG00000017683) #9	ENSDNOG00000043479 #10	RASL11A (ENSDNOG00000010166) #12	ENSDNOG00000041047	ENSDNOG00000037405 #13	MTIF3 (ENSDNOG00000037641) #14	LNX2 (ENSDNOG00000006927) #15	ENSDNOG00000043676 #16	ENSDNOG00000044869	GSX1 (ENSDNOG00000011821) #17	PDX1 (ENSDNOG00000003213) #18	CDX2 (ENSDNOG00000035260) #19	ENSDNOG00000046210 #20	FLT3 (ENSDNOG00000001582) #21	PAN3 (ENSDNOG00000017391) #22	ENSDNOG00000031252	ENSDNOG00000036523	SLC46A3 (ENSDNOG00000000330) #25	ENSDNOG00000031980
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144.g	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.f ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Opossum	MODERN SPECIES	3	CDK8 (ENSMODG00000008753)	WASF3 (ENSMODG00000008795) #7	ENSMODG00000008874 #10	RPL21 (ENSMODG00000008923) ##11	RASL11A (ENSMODG00000008941) #12	GTF3A (ENSMODG00000008955) #13	ENSMODG00000008962 #14	ENSMODG00000050662	LNX2 (ENSMODG00000008989) #15	ENSMODG00000047217	GSX1 (ENSMODG00000009010) #17	ENSMODG00000009015	CDX2 (ENSMODG00000009021) #19	URAD (ENSMODG00000039216) #20	FLT3 (ENSMODG00000009045) #21	PAN3 (ENSMODG00000009065) #22	FLT1 (ENSMODG00000009128) #23	POMP (ENSMODG00000009139) #24	SLC46A3 (ENSMODG00000009152) #25	MTUS2 (ENSMODG00000009167) #27	SLC7A1 (ENSMODG00000009198) #28	ENSMODG00000009203	UBL3 (ENSMODG00000037463) #29	KATNAL1 (ENSMODG00000009220) #30	ENSMODG00000048360	ENSMODG00000009238 ##31	ENSMODG00000009262 #32	ALOX5AP (ENSMODG00000009265) #33	MEDAG (ENSMODG00000009294) #34	ENSMODG00000041498	ENSMODG00000009305 #36
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.u #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144.g	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.f ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Tasmanian devil	MODERN SPECIES	2	CDK8 (ENSSHAG00000012149)	WASF3 (ENSSHAG00000013579) #7	GPR12 (ENSSHAG00000030631) #9	USP12 (ENSSHAG00000016123) #10	RPL21 (ENSSHAG00000000845) ##11	RASL11A (ENSSHAG00000016468) #12	GTF3A (ENSSHAG00000016965) #13	ENSSHAG00000017006 #14	LNX2 (ENSSHAG00000017242) #15	ENSSHAG00000025491	GSX1 (ENSSHAG00000029989) #17	ENSSHAG00000017812	CDX2 (ENSSHAG00000017862) #19	ENSSHAG00000024737 #20	FLT3 (ENSSHAG00000017900) #21	PAN3 (ENSSHAG00000018065) #22	ENSSHAG00000029371	ENSSHAG00000018212 #23	POMP (ENSSHAG00000030814) #24	SLC46A3 (ENSSHAG00000018516) #25	MTUS2 (ENSSHAG00000003528) #27	SLC7A1 (ENSSHAG00000005902) #28	UBL3 (ENSSHAG00000026625) #29	KATNAL1 (ENSSHAG00000025350) #30	ENSSHAG00000014034 ##31	ENSSHAG00000014789 #32	ALOX5AP (ENSSHAG00000015184) #33	MEDAG (ENSSHAG00000027393) #34	ENSSHAG00000016069 #35	HSPH1 (ENSSHAG00000016697) #37	ENSSHAG00000028294
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.u #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144.g	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.f ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.a.a.a.b.a.b.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.u #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000164144.g	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.f ##31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
koala	MODERN SPECIES	66	CDK8 (ENSPCIG00000017352)	WASF3 (ENSPCIG00000037264) #7	GPR12 (ENSPCIG00000023230) #9	USP12 (ENSPCIG00000022249) #10	RPL21 (ENSPCIG00000022238) ##11	RASL11A (ENSPCIG00000031842) #12	GTF3A (ENSPCIG00000022226) #13	MTIF3 (ENSPCIG00000022222) #14	LNX2 (ENSPCIG00000022213) #15	ENSPCIG00000022208	GSX1 (ENSPCIG00000022205) #17	PDX1 (ENSPCIG00000022204) #18	CDX2 (ENSPCIG00000022200) #19	ENSPCIG00000022197 #20	FLT3 (ENSPCIG00000022190) #21	PAN3 (ENSPCIG00000022181) #22	ENSPCIG00000022165	ENSPCIG00000036587 #23	ENSPCIG00000032952	ENSPCIG00000022156 #24	SLC46A3 (ENSPCIG00000022153) #25	MTUS2 (ENSPCIG00000003294) #27	SLC7A1 (ENSPCIG00000003318) #28	UBL3 (ENSPCIG00000003332) #29	KATNAL1 (ENSPCIG00000021438) #30	ENSPCIG00000021432 ##31	USPL1 (ENSPCIG00000019844) #32	ALOX5AP (ENSPCIG00000019847) #33	MEDAG (ENSPCIG00000012205) #34	ENSPCIG00000012206 #35	ENSPCIG00000026818 #36
Common wonbat	MODERN SPECIES	1049	CDK8 (ENSVURG00010020617)	WASF3 (ENSVURG00010020608) #7	ENSVURG00010020587 #10	ENSVURG00010020571 ##11	RASL11A (ENSVURG00010020566) #12	ENSVURG00010020554 #13	ENSVURG00010020547 #14	LNX2 (ENSVURG00010020536) #15	ENSVURG00010020531	GSX1 (ENSVURG00010020523) #17	ENSVURG00010020522	PDX1 (ENSVURG00010020518) #18	CDX2 (ENSVURG00010020516) #19	ENSVURG00010020509 #20	FLT3 (ENSVURG00010020490) #21	PAN3 (ENSVURG00010020471) #22	FLT1 (ENSVURG00010020423) #23	POMP (ENSVURG00010020395) #24	SLC46A3 (ENSVURG00010020388) #25	ENSVURG00010020380	ENSVURG00010020337 #27	SLC7A1 (ENSVURG00010020318) #28	UBL3 (ENSVURG00010020310) #29	ENSVURG00010020303	KATNAL1 (ENSVURG00010020293) #30	ENSVURG00010020283 ##31	ENSVURG00010020274 #32	ALOX5AP (ENSVURG00010020266) #33	MEDAG (ENSVURG00010020258) #34	ENSVURG00010020246 #35	ENSVURG00010020232 #36
Wallaby	MODERN SPECIES	1213																ENSMEUG00000011366 #22
Platypus	MODERN SPECIES	12	CDK8 (ENSOANG00000009050)	WASF3 (ENSOANG00000009051) #7	GPR12 (ENSOANG00000009052) #9	USP12 (ENSOANG00000009053) #10	ENSOANG00000009054 #11	RASL11A (ENSOANG00000009056) #12	GTF3A (ENSOANG00000038706) #13	ENSOANG00000009057 #14	LNX2 (ENSOANG00000009060) #15	ENSOANG00000051147	GSX1 (ENSOANG00000040381) #17	ENSOANG00000009064	ENSOANG00000043986 #19	ENSOANG00000009066 #20	ENSOANG00000045061 #21	PAN3 (ENSOANG00000009070) #22	FLT1 (ENSOANG00000009071) #23	POMP (ENSOANG00000050524) #24	SLC46A3 (ENSOANG00000015257) #25	ENSOANG00000048575 #27	SLC7A1 (ENSOANG00000041862) #28	UBL3 (ENSOANG00000039422) #29	KATNAL1 (ENSOANG00000014718) #30	ENSOANG00000014719 #31	ENSOANG00000048910	ENSOANG00000014720 #32	ALOX5AP (ENSOANG00000040345) #33	MEDAG (ENSOANG00000039210) #34	TEX26 (ENSOANG00000046294) #35	ENSOANG00000015473 #36	HSPH1 (ENSOANG00000015474) #37
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Lepidosauria	ANCESTRAL SPECIES	17	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000162542 #18	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00960000190702	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00610000086058.b
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Toxicofera	ANCESTRAL SPECIES	9	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00940000161261.b #19	ENSGT00940000161261.a #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Lizard	MODERN SPECIES	2	MPHOSPH8 (ENSACAG00000001907)	ENSACAG00000034997	ENSACAG00000001725	ENSACAG00000001683	ENSACAG00000001418	ENSACAG00000044212	ENSACAG00000039778	ARHGAP20 (ENSACAG00000001368)	FDX1 (ENSACAG00000001343)	RDX (ENSACAG00000001083)	ZC3H12C (ENSACAG00000001031)	ENSACAG00000022780	ENSACAG00000037932	FLT3 (ENSACAG00000009188) #21	ENSACAG00000044284	PAN3 (ENSACAG00000009278) #22	ENSACAG00000038181	ENSACAG00000043442	FLT1 (ENSACAG00000009344) #23	ENSACAG00000009671 #24	SLC46A3 (ENSACAG00000009677) #25	MTUS2 (ENSACAG00000009682) #27	SLC7A1 (ENSACAG00000004104) #28	UBL3 (ENSACAG00000005809) #29	KATNAL1 (ENSACAG00000005119) #30	ENSACAG00000005092 #31	USPL1 (ENSACAG00000005080) #32	ALOX5AP (ENSACAG00000045423) #33	MEDAG (ENSACAG00000005068) #34	ENSACAG00000005067	ENSACAG00000005049 #36
Elapidae	ANCESTRAL SPECIES	10	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00940000161261.b #19	ENSGT00940000161261.a #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Elapidae_a	ANCESTRAL SPECIES	12	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00940000161261.b #19	ENSGT00940000161261.a #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Acanthophiinae	ANCESTRAL SPECIES	14	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00940000161261.b #19	ENSGT00940000161261.a #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00610000086058.b.h
Mainland tiger snake	MODERN SPECIES	68	SHISA2 (ENSNSUG00000013391)	ATP8A2 (ENSNSUG00000013390)	RNF6 (ENSNSUG00000013389)	CDK8 (ENSNSUG00000013378)	WASF3 (ENSNSUG00000013377) #7	GPR12 (ENSNSUG00000013376) #9	USP12 (ENSNSUG00000013375) #10	RPL21 (ENSNSUG00000013372) ##11	MTIF3 (ENSNSUG00000013371) #14	GTF3A (ENSNSUG00000013369) #13	LNX2 (ENSNSUG00000013336) #15	ENSNSUG00000013331	ENSNSUG00000013330	CDX2 (ENSNSUG00000013289) #19	FLT3 (ENSNSUG00000013286) #21	PAN3 (ENSNSUG00000012955) #22	ENSNSUG00000012954	FLT1 (ENSNSUG00000012953) #23	POMP (ENSNSUG00000012952) #24	SLC46A3 (ENSNSUG00000012951) #25	MTUS2 (ENSNSUG00000012929) #27	SLC7A1 (ENSNSUG00000012928) #28	UBL3 (ENSNSUG00000012927) #29	KATNAL1 (ENSNSUG00000012862) #30	ENSNSUG00000012860 #31	USPL1 (ENSNSUG00000012859) #32	ALOX5AP (ENSNSUG00000012858) #33	MEDAG (ENSNSUG00000012845) #34	ENSNSUG00000012844	ENSNSUG00000012843 #37	B3GLCT (ENSNSUG00000012842)
Eastern brown snake	MODERN SPECIES	41	ATP8A2 (ENSPTXG00000005319)	RNF6 (ENSPTXG00000005321)	CDK8 (ENSPTXG00000005324)	WASF3 (ENSPTXG00000005326) #7	GPR12 (ENSPTXG00000005329) #9	USP12 (ENSPTXG00000005330) #10	RPL21 (ENSPTXG00000005331) ##11	GTF3A (ENSPTXG00000005334) #13	MTIF3 (ENSPTXG00000005335) #14	LNX2 (ENSPTXG00000005336) #15	ENSPTXG00000005337	ENSPTXG00000005338	ENSPTXG00000005339	ENSPTXG00000005340 #19	FLT3 (ENSPTXG00000005341) #21	PAN3 (ENSPTXG00000005342) #22	FLT1 (ENSPTXG00000005343) #23	POMP (ENSPTXG00000005344) #24	SLC46A3 (ENSPTXG00000005345) #25	MTUS2 (ENSPTXG00000005346) #27	SLC7A1 (ENSPTXG00000005347) #28	UBL3 (ENSPTXG00000005348) #29	KATNAL1 (ENSPTXG00000005349) #30	ENSPTXG00000005350 #31	USPL1 (ENSPTXG00000005351) #32	ALOX5AP (ENSPTXG00000005352) #33	MEDAG (ENSPTXG00000005353) #34	ENSPTXG00000005354 #36	HSPH1 (ENSPTXG00000005358) #37	B3GLCT (ENSPTXG00000005615)	FRY (ENSPTXG00000005637)
Blue-lipped sea krait	MODERN SPECIES	1472																PAN3 (ENSLLTG00000012709) #22	ENSLLTG00000012694
Indian cobra	MODERN SPECIES	4	RNF6 (ENSNNAG00000018464)	CDK8 (ENSNNAG00000018452)	WASF3 (ENSNNAG00000018442) #7	GPR12 (ENSNNAG00000018437) #9	USP12 (ENSNNAG00000018426) #10	RPL21 (ENSNNAG00000018417) ##11	RASL11A (ENSNNAG00000018412) #12	GTF3A (ENSNNAG00000018407) #13	ENSNNAG00000018403	LNX2 (ENSNNAG00000018400) #15	ENSNNAG00000018396	ENSNNAG00000018395	ENSNNAG00000018390 #19	ENSNNAG00000018388 #19	FLT3 (ENSNNAG00000018383) #21	PAN3 (ENSNNAG00000018380) #22	ENSNNAG00000018376	ENSNNAG00000018372	FLT1 (ENSNNAG00000018362) #23	POMP (ENSNNAG00000018354) #24	SLC46A3 (ENSNNAG00000018349) #25	ENSNNAG00000018308 #27	SLC7A1 (ENSNNAG00000018294) #28	UBL3 (ENSNNAG00000018292) #29	KATNAL1 (ENSNNAG00000018289) #30	ENSNNAG00000018286 #31	USPL1 (ENSNNAG00000018281) #32	ALOX5AP (ENSNNAG00000018279) #33	MEDAG (ENSNNAG00000018277) #34	ENSNNAG00000018274 #36	HSPH1 (ENSNNAG00000018268) #37
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120.d #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Common wall lizard	MODERN SPECIES	12	CDK8 (ENSPMRG00000003886)	WASF3 (ENSPMRG00000003897) #7	GPR12 (ENSPMRG00000003909) #9	USP12 (ENSPMRG00000003915) #10	ENSPMRG00000003922 ##11	RASL11A (ENSPMRG00000003932) #12	GTF3A (ENSPMRG00000003933) #13	MTIF3 (ENSPMRG00000003936) #14	LNX2 (ENSPMRG00000003941) #15	ENSPMRG00000003947	ENSPMRG00000003950	ENSPMRG00000003955	ENSPMRG00000003962	CDX2 (ENSPMRG00000003971) #19	FLT3 (ENSPMRG00000004013) #21	PAN3 (ENSPMRG00000004057) #22	ENSPMRG00000004109	FLT1 (ENSPMRG00000004119) #23	ENSPMRG00000004155 #24	SLC46A3 (ENSPMRG00000004167) #25	ENSPMRG00000004177	MTUS2 (ENSPMRG00000004195) #27	SLC7A1 (ENSPMRG00000004229) #28	UBL3 (ENSPMRG00000004256) #29	KATNAL1 (ENSPMRG00000004274) #30	ENSPMRG00000004293 #31	ENSPMRG00000004304	USPL1 (ENSPMRG00000002600) #32	ALOX5AP (ENSPMRG00000002620) #33	MEDAG (ENSPMRG00000002626) #34	TEX26 (ENSPMRG00000002633) #35
Argentine black and white tegu	MODERN SPECIES		NUP58 (ENSSMRG00000014779)	SHISA2 (ENSSMRG00000014778)	ATP8A2 (ENSSMRG00000013134)	CDK8 (ENSSMRG00000013133)	WASF3 (ENSSMRG00000013132) #7	USP12 (ENSSMRG00000013130) #10	RASL11A (ENSSMRG00000013127) #12	GTF3A (ENSSMRG00000013126) #13	MTIF3 (ENSSMRG00000013125) #14	LNX2 (ENSSMRG00000013124) #15	ENSSMRG00000013122	ENSSMRG00000013121	ENSSMRG00000013120	CDX2 (ENSSMRG00000013119) #19	FLT3 (ENSSMRG00000013118) #21	PAN3 (ENSSMRG00000013117) #22	FLT1 (ENSSMRG00000013116) #23	POMP (ENSSMRG00000013115) #24	SLC46A3 (ENSSMRG00000013114) #25	MTUS2 (ENSSMRG00000013112) #27	SLC7A1 (ENSSMRG00000013111) #28	UBL3 (ENSSMRG00000013108) #29	KATNAL1 (ENSSMRG00000013106) #30	ENSSMRG00000013105 #31	USPL1 (ENSSMRG00000013104) #32	ALOX5AP (ENSSMRG00000013103) #33	MEDAG (ENSSMRG00000013102) #34	ENSSMRG00000013101	ENSSMRG00000013098 #36	HSPH1 (ENSSMRG00000013097) #37	B3GLCT (ENSSMRG00000013095)
tuatara	MODERN SPECIES	1117			ENSSPUG00000005419 #10	ENSSPUG00000005404 #10	ENSSPUG00000005393	RPL21 (ENSSPUG00000005343) ##11	RASL11A (ENSSPUG00000005315) #12	GTF3A (ENSSPUG00000005307) #13	MTIF3 (ENSSPUG00000005295) #14	LNX2 (ENSSPUG00000005112) #15	ENSSPUG00000005085	GSX1 (ENSSPUG00000005080) #17	PDX1 (ENSSPUG00000005068) #18	CDX2 (ENSSPUG00000005058) #19	FLT3 (ENSSPUG00000004920) #21	PAN3 (ENSSPUG00000004768) #22	FLT1 (ENSSPUG00000004702) #23	POMP (ENSSPUG00000004693) #24	ENSSPUG00000004689	SLC46A3 (ENSSPUG00000004676) #25	ENSSPUG00000004651 #27	SLC7A1 (ENSSPUG00000004618) #28	ENSSPUG00000004612	UBL3 (ENSSPUG00000004602) #29	KATNAL1 (ENSSPUG00000004497) #30	ENSSPUG00000004469 #31
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00960000190702	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Aves	ANCESTRAL SPECIES		ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00940000158948.b
African ostrich	MODERN SPECIES	1023	SHISA2 (ENSSCUG00000015106)	ATP8A2 (ENSSCUG00000015083)	RNF6 (ENSSCUG00000015076)	CDK8 (ENSSCUG00000015060)	WASF3 (ENSSCUG00000015048) #7	GPR12 (ENSSCUG00000015043) #9	USP12 (ENSSCUG00000015037) #10	RPL21 (ENSSCUG00000015026) ##11	RASL11A (ENSSCUG00000015022) #12	GTF3A (ENSSCUG00000015016) #13	MTIF3 (ENSSCUG00000015015) #14	LNX2 (ENSSCUG00000015009) #15	ENSSCUG00000015006	ENSSCUG00000014998	FLT3 (ENSSCUG00000014991) #21	PAN3 (ENSSCUG00000014968) #22	FLT1 (ENSSCUG00000014934) #23	POMP (ENSSCUG00000014902) #24	SLC46A3 (ENSSCUG00000014897) #25	MTUS2 (ENSSCUG00000014886) #27	SLC7A1 (ENSSCUG00000014867) #28	UBL3 (ENSSCUG00000014850) #29	KATNAL1 (ENSSCUG00000014834) #30	ENSSCUG00000014823 #31	USPL1 (ENSSCUG00000014817) #32	ALOX5AP (ENSSCUG00000014811) #33	ENSSCUG00000014800 #36	HSPH1 (ENSSCUG00000014684) #37	B3GLCT (ENSSCUG00000014653)	ENSSCUG00000014652	FRY (ENSSCUG00000014593)
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00940000158948.b	ENSGT00610000086058.b
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00940000158948.b	ENSGT00610000086058.b
Anatidae	ANCESTRAL SPECIES	16	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00940000158948.b	ENSGT00610000086058.b	ENSGT00390000012305.b
Pink-footed goose	MODERN SPECIES	66	RNF6 (ENSABRG00000020261)	CDK8 (ENSABRG00000020224)	WASF3 (ENSABRG00000020213) #7	GPR12 (ENSABRG00000020211) #9	USP12 (ENSABRG00000020207) #10	RPL21 (ENSABRG00000020198) ##11	RASL11A (ENSABRG00000020194) #12	GTF3A (ENSABRG00000020186) #13	MTIF3 (ENSABRG00000020183) #14	LNX2 (ENSABRG00000020178) #15	ENSABRG00000020175	GSX1 (ENSABRG00000020173) #17	ENSABRG00000020168	CDX2 (ENSABRG00000020167) #19	FLT3 (ENSABRG00000020154) #21	PAN3 (ENSABRG00000020145) #22	FLT1 (ENSABRG00000020130) #23	POMP (ENSABRG00000020108) #24	SLC46A3 (ENSABRG00000020099) #25	MTUS2 (ENSABRG00000020080) #27	SLC7A1 (ENSABRG00000020071) #28	UBL3 (ENSABRG00000020066) #29	KATNAL1 (ENSABRG00000020047) #30	ENSABRG00000020036 #31	USPL1 (ENSABRG00000020031) #32	ALOX5AP (ENSABRG00000020028) #33	HSPH1 (ENSABRG00000020015) #37	B3GLCT (ENSABRG00000020013)	RXFP2 (ENSABRG00000020009)	FRY (ENSABRG00000014418)	ZAR1L (ENSABRG00000013581)
Duck	MODERN SPECIES		RNF6 (ENSAPLG00000009544)	CDK8 (ENSAPLG00000009252)	WASF3 (ENSAPLG00000005025) #7	GPR12 (ENSAPLG00000001069) #9	USP12 (ENSAPLG00000005359) #10	RPL21 (ENSAPLG00000005641) ##11	RASL11A (ENSAPLG00000017444) #12	ENSAPLG00000005957 #13	MTIF3 (ENSAPLG00000006117) #14	LNX2 (ENSAPLG00000005445) #15	ENSAPLG00000005977	GSX1 (ENSAPLG00000024317) #17	ENSAPLG00000026245	CDX2 (ENSAPLG00000020255) #19	FLT3 (ENSAPLG00000005989) #21	PAN3 (ENSAPLG00000006496) #22	FLT1 (ENSAPLG00000006689) #23	POMP (ENSAPLG00000008213) #24	SLC46A3 (ENSAPLG00000008223) #25	MTUS2 (ENSAPLG00000008305) #27	SLC7A1 (ENSAPLG00000008545) #28	UBL3 (ENSAPLG00000020134) #29	KATNAL1 (ENSAPLG00000003805) #30	ENSAPLG00000030014 #31	USPL1 (ENSAPLG00000003991) #32	ALOX5AP (ENSAPLG00000004149) #33	HSPH1 (ENSAPLG00000005104) #37	B3GLCT (ENSAPLG00000006024)	RXFP2 (ENSAPLG00000006226)	FRY (ENSAPLG00000006519)	ZAR1L (ENSAPLG00000007718)
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643.a	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00910000147887	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000159635.q #37	ENSGT00940000155499	ENSGT00610000086058.b	ENSGT00390000012305.b
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643.a	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000159635.q #37	ENSGT00940000155499	ENSGT00610000086058.b	ENSGT00390000012305.b	ENSGT00390000003602
Chicken	MODERN SPECIES		RNF6 (ENSGALG00010005891)	CDK8 (ENSGALG00010005875)	WASF3 (ENSGALG00010005848) #7	GPR12 (ENSGALG00010005843) #9	USP12 (ENSGALG00010005830) #10	RPL21 (ENSGALG00010005785) ##11	RASL11A (ENSGALG00010005784) #12	GTF3A (ENSGALG00010005143) #13	MTIF3 (ENSGALG00010005123) #14	LNX2 (ENSGALG00010005132) #15	ENSGALG00010005082	GSX1 (ENSGALG00010004613) #17	ENSGALG00010004598	CDX2 (ENSGALG00010004589) #19	FLT3 (ENSGALG00010004758) #21	PAN3 (ENSGALG00010005296) #22	FLT1 (ENSGALG00010005282) #23	POMP (ENSGALG00010005060) #24	SLC46A3 (ENSGALG00010005042) #25	ENSGALG00010007162 #27	SLC7A1 (ENSGALG00010007106) #28	UBL3 (ENSGALG00010007070) #29	KATNAL1 (ENSGALG00010007028) #30	HMGB1 (ENSGALG00010007011) #31	USPL1 (ENSGALG00010006988) #32	ALOX5AP (ENSGALG00010006942) #33	HSPH1 (ENSGALG00010006913) #37	B3GLCT (ENSGALG00010006903)	FRY (ENSGALG00010006835)	ZAR1L (ENSGALG00010006752)	BRCA2 (ENSGALG00010006740)
Turkey	MODERN SPECIES		ENSMGAG00000015082	ENSMGAG00000021510 #37	ENSMGAG00000015083 #37	ENSMGAG00000015086 #32	ENSMGAG00000015085 #33	ENSMGAG00000015087 #31	ENSMGAG00000015088 #30	UBL3 (ENSMGAG00000020600) #29	ENSMGAG00000007304 #27	ENSMGAG00000015090 #28	ENSMGAG00000015091 #27	ENSMGAG00000015094 #24	ENSMGAG00000015093 #25	ENSMGAG00000018803 #23	ENSMGAG00000015095	ENSMGAG00000015096 #22	ENSMGAG00000015097 #21	ENSMGAG00000018257 #19	ENSMGAG00000021200	ENSMGAG00000019450	LNX2 (ENSMGAG00000015103) #15	ENSMGAG00000015102 #13	ENSMGAG00000015101 #14	ENSMGAG00000019583 #12	ENSMGAG00000015105 ##11	USP12 (ENSMGAG00000015106) #10	ENSMGAG00000015107 #7	ENSMGAG00000015597 #9	ENSMGAG00000021988	ENSMGAG00000015108	ENSMGAG00000015109
Japanese quail	MODERN SPECIES		RNF6 (ENSCJPG00005000859)	CDK8 (ENSCJPG00005000850)	WASF3 (ENSCJPG00005000831) #7	GPR12 (ENSCJPG00005000813) #9	USP12 (ENSCJPG00005000797) #10	RPL21 (ENSCJPG00005000787) ##11	RASL11A (ENSCJPG00005020451) #12	GTF3A (ENSCJPG00005020448) #13	MTIF3 (ENSCJPG00005020447) #14	LNX2 (ENSCJPG00005020445) #15	ENSCJPG00005020444	GSX1 (ENSCJPG00005020440) #17	ENSCJPG00005020438	CDX2 (ENSCJPG00005020437) #19	FLT3 (ENSCJPG00005020434) #21	PAN3 (ENSCJPG00005020433) #22	ENSCJPG00005020432	FLT1 (ENSCJPG00005020431) #23	POMP (ENSCJPG00005020430) #24	SLC46A3 (ENSCJPG00005020429) #25	MTUS2 (ENSCJPG00005020428) #27	SLC7A1 (ENSCJPG00005020427) #28	UBL3 (ENSCJPG00005020426) #29	KATNAL1 (ENSCJPG00005020425) #30	ENSCJPG00005020423 #31	USPL1 (ENSCJPG00005020420) #32	ALOX5AP (ENSCJPG00005020419) #33	HSPH1 (ENSCJPG00005020418) #37	B3GLCT (ENSCJPG00005020417)	FRY (ENSCJPG00005020415)	ZAR1L (ENSCJPG00005020414)
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00610000086058.b	ENSGT00390000012305.b	ENSGT00390000003602
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.x.a #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00610000086058.b	ENSGT00390000012305.b	ENSGT00390000003602
Great tit	MODERN SPECIES		RNF6 (ENSPMJG00000017493)	ENSPMJG00000017492	WASF3 (ENSPMJG00000017491) #7	GPR12 (ENSPMJG00000017490) #9	USP12 (ENSPMJG00000017489) #10	RPL21 (ENSPMJG00000017486) ##11	RASL11A (ENSPMJG00000017485) #12	GTF3A (ENSPMJG00000017482) #13	ENSPMJG00000017481 #14	LNX2 (ENSPMJG00000017480) #15	ENSPMJG00000017479	GSX1 (ENSPMJG00000017478) #17	ENSPMJG00000017477	CDX2 (ENSPMJG00000017476) #19	FLT3 (ENSPMJG00000017475) #21	PAN3 (ENSPMJG00000017474) #22	FLT1 (ENSPMJG00000017473) #23	POMP (ENSPMJG00000017472) #24	SLC46A3 (ENSPMJG00000017471) #25	MTUS2 (ENSPMJG00000017469) #27	SLC7A1 (ENSPMJG00000017459) #28	UBL3 (ENSPMJG00000017458) #29	KATNAL1 (ENSPMJG00000017454) #30	ENSPMJG00000017453 #31	USPL1 (ENSPMJG00000017450) #32	ALOX5AP (ENSPMJG00000017448) #33	HSPH1 (ENSPMJG00000017446) #37	B3GLCT (ENSPMJG00000017445)	FRY (ENSPMJG00000015047)	ZAR1L (ENSPMJG00000015024)	BRCA2 (ENSPMJG00000015023)
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.w #13	ENSGT00940000155647.x.a #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00610000086058.b	ENSGT00390000012305.b	ENSGT00390000003602
Flycatcher	MODERN SPECIES		RNF6 (ENSFALG00000008663)	WASF3 (ENSFALG00000008659) #7	USP12 (ENSFALG00000008645) #10	RPL21 (ENSFALG00000027093) ##11	RASL11A (ENSFALG00000025266) #12	ENSFALG00000008614 #13	ENSFALG00000025967 #13	MTIF3 (ENSFALG00000008612) #14	LNX2 (ENSFALG00000008604) #15	ENSFALG00000023517	GSX1 (ENSFALG00000028458) #17	ENSFALG00000008588	CDX2 (ENSFALG00000014799) #19	ENSFALG00000025892	FLT3 (ENSFALG00000008570) #21	PAN3 (ENSFALG00000008554) #22	FLT1 (ENSFALG00000008542) #23	POMP (ENSFALG00000008541) #24	SLC46A3 (ENSFALG00000008538) #25	MTUS2 (ENSFALG00000008535) #27	SLC7A1 (ENSFALG00000008521) #28	UBL3 (ENSFALG00000008516) #29	KATNAL1 (ENSFALG00000008512) #30	ENSFALG00000008507 #31	USPL1 (ENSFALG00000008499) #32	ALOX5AP (ENSFALG00000008494) #33	HSPH1 (ENSFALG00000008492) #37	B3GLCT (ENSFALG00000008485)	FRY (ENSFALG00000008469)	ZAR1L (ENSFALG00000008466)	BRCA2 (ENSFALG00000008451)
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.w #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00610000086058.b	ENSGT00390000012305.b	ENSGT00390000003602
Medium ground finch	MODERN SPECIES	5	ATP8A2 (ENSGFOG00000001991)	RNF6 (ENSGFOG00000001799)	CDK8 (ENSGFOG00000001743)	WASF3 (ENSGFOG00000001716) #7	GPR12 (ENSGFOG00000001711) #9	USP12 (ENSGFOG00000001695) #10	RPL21 (ENSGFOG00000001678) ##11	RASL11A (ENSGFOG00000001674) #12	GTF3A (ENSGFOG00000001665) #13	ENSGFOG00000001662 #14	LNX2 (ENSGFOG00000001652) #15	ENSGFOG00000001647	ENSGFOG00000001645	ENSGFOG00000001641	FLT3 (ENSGFOG00000001547) #21	PAN3 (ENSGFOG00000001517) #22	FLT1 (ENSGFOG00000001313) #23	POMP (ENSGFOG00000001287) #24	SLC46A3 (ENSGFOG00000001284) #25	ENSGFOG00000001274 #27	ENSGFOG00000001267 #27	SLC7A1 (ENSGFOG00000001256) #28	UBL3 (ENSGFOG00000001249) #29
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647.w #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00610000086058.b	ENSGT00390000012305.b	ENSGT00390000003602
Zebra finch	MODERN SPECIES		RNF6 (ENSTGUG00000011529)	CDK8 (ENSTGUG00000011534)	WASF3 (ENSTGUG00000011551) #7	GPR12 (ENSTGUG00000029743) #9	USP12 (ENSTGUG00000011564) #10	RPL21 (ENSTGUG00000011571) ##11	RASL11A (ENSTGUG00000011581) #12	GTF3A (ENSTGUG00000011584) #13	MTIF3 (ENSTGUG00000011587) #14	LNX2 (ENSTGUG00000011590) #15	ENSTGUG00000026413	GSX1 (ENSTGUG00000011603) #17	ENSTGUG00000011604	CDX2 (ENSTGUG00000024715) #19	FLT3 (ENSTGUG00000011607) #21	PAN3 (ENSTGUG00000011627) #22	FLT1 (ENSTGUG00000011631) #23	POMP (ENSTGUG00000019231) #24	SLC46A3 (ENSTGUG00000011660) #25	MTUS2 (ENSTGUG00000011664) #27	SLC7A1 (ENSTGUG00000011671) #28	UBL3 (ENSTGUG00000023373) #29	KATNAL1 (ENSTGUG00000011690) #30	HMGB1 (ENSTGUG00000022860) #31	USPL1 (ENSTGUG00000011708) #32	ALOX5AP (ENSTGUG00000011710) #33	HSPH1 (ENSTGUG00000011712) #37	B3GLCT (ENSTGUG00000011725)	FRY (ENSTGUG00000011735)	ZAR1L (ENSTGUG00000011760)	BRCA2 (ENSTGUG00000011763)
Common canary	MODERN SPECIES	4	RNF6 (ENSSCAG00000006466)	CDK8 (ENSSCAG00000006481)	WASF3 (ENSSCAG00000006489) #7	GPR12 (ENSSCAG00000006491) #9	USP12 (ENSSCAG00000006508) #10	RPL21 (ENSSCAG00000006515) ##11	RASL11A (ENSSCAG00000006526) #12	GTF3A (ENSSCAG00000006534) #13	MTIF3 (ENSSCAG00000006540) #14	LNX2 (ENSSCAG00000006544) #15	ENSSCAG00000006550	GSX1 (ENSSCAG00000006551) #17	ENSSCAG00000006555	CDX2 (ENSSCAG00000006556) #19	FLT3 (ENSSCAG00000006561) #21	PAN3 (ENSSCAG00000006588) #22	FLT1 (ENSSCAG00000006594) #23	POMP (ENSSCAG00000006603) #24	SLC46A3 (ENSSCAG00000006605) #25	ENSSCAG00000006607	MTUS2 (ENSSCAG00000006627) #27	SLC7A1 (ENSSCAG00000006665) #28	UBL3 (ENSSCAG00000006691) #29	KATNAL1 (ENSSCAG00000006695) #30	ENSSCAG00000006705 #31	USPL1 (ENSSCAG00000006715) #32	ALOX5AP (ENSSCAG00000006720) #33	HSPH1 (ENSSCAG00000006925) #37	B3GLCT (ENSSCAG00000008506)	FRY (ENSSCAG00000008591)	BRCA2 (ENSSCAG00000008655)
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00940000159635 #37	ENSGT00940000155499	ENSGT00610000086058.b	ENSGT00390000012305.b	ENSGT00390000003602
Kakapo	MODERN SPECIES	11	CDK8 (ENSSHBG00005013211)	WASF3 (ENSSHBG00005013203) #7	GPR12 (ENSSHBG00005013192) #9	ENSSHBG00005013185 #10	ENSSHBG00005013174 #10	RPL21 (ENSSHBG00005013149) ##11	RASL11A (ENSSHBG00005013133) #12	GTF3A (ENSSHBG00005013114) #13	MTIF3 (ENSSHBG00005013103) #14	LNX2 (ENSSHBG00005013084) #15	ENSSHBG00005013073	GSX1 (ENSSHBG00005013067) #17	ENSSHBG00005013057	CDX2 (ENSSHBG00005013047) #19	FLT3 (ENSSHBG00005013018) #21	PAN3 (ENSSHBG00005010335) #22	FLT1 (ENSSHBG00005009961) #23	POMP (ENSSHBG00005009882) #24	SLC46A3 (ENSSHBG00005009851) #25	MTUS2 (ENSSHBG00005015801) #27	SLC7A1 (ENSSHBG00005015784) #28	UBL3 (ENSSHBG00005015767) #29	KATNAL1 (ENSSHBG00005015762) #30	ENSSHBG00005015756 #31	USPL1 (ENSSHBG00005015735) #32	ALOX5AP (ENSSHBG00005015727) #33	HSPH1 (ENSSHBG00005015715) #37	B3GLCT (ENSSHBG00005014739)	FRY (ENSSHBG00005014192)	ZAR1L (ENSSHBG00005014049)	BRCA2 (ENSSHBG00005013855)
Golden eagle	MODERN SPECIES	10	ENSACCG00020016028	CDK8 (ENSACCG00020016007)	WASF3 (ENSACCG00020015986) #7	GPR12 (ENSACCG00020015967) #9	USP12 (ENSACCG00020015953) #10	RPL21 (ENSACCG00020015935) ##11	RASL11A (ENSACCG00020015924) #12	GTF3A (ENSACCG00020015904) #13	MTIF3 (ENSACCG00020015893) #14	LNX2 (ENSACCG00020015880) #15	ENSACCG00020015871	GSX1 (ENSACCG00020015856) #17	ENSACCG00020015849	CDX2 (ENSACCG00020015840) #19	FLT3 (ENSACCG00020015779) #21	PAN3 (ENSACCG00020015728) #22	FLT1 (ENSACCG00020015689) #23	POMP (ENSACCG00020015647) #24	SLC46A3 (ENSACCG00020015624) #25	MTUS2 (ENSACCG00020015600) #27	SLC7A1 (ENSACCG00020015572) #28	UBL3 (ENSACCG00020015554) #29	KATNAL1 (ENSACCG00020015538) #30	ENSACCG00020015526 #31	USPL1 (ENSACCG00020015509) #32	ALOX5AP (ENSACCG00020015490) #33	ENSACCG00020015479	HSPH1 (ENSACCG00020015450) #37	B3GLCT (ENSACCG00020015407)	FRY (ENSACCG00020014960)	ZAR1L (ENSACCG00020014519)
Australian saltwater crocodile	MODERN SPECIES	27	ENSCPRG00005012753	ENSCPRG00005012709	RNF6 (ENSCPRG00005012704)	CDK8 (ENSCPRG00005012631)	WASF3 (ENSCPRG00005012622) #7	GPR12 (ENSCPRG00005012587) #9	USP12 (ENSCPRG00005012451) #10	RPL21 (ENSCPRG00005012404) ##11	RASL11A (ENSCPRG00005012398) #12	GTF3A (ENSCPRG00005012372) #13	MTIF3 (ENSCPRG00005012370) #14	LNX2 (ENSCPRG00005012365) #15	ENSCPRG00005012363	ENSCPRG00005012327	FLT3 (ENSCPRG00005012285) #21	PAN3 (ENSCPRG00005012241) #22	FLT1 (ENSCPRG00005012211) #23	POMP (ENSCPRG00005012162) #24	SLC46A3 (ENSCPRG00005012148) #25	MTUS2 (ENSCPRG00005011961) #27	SLC7A1 (ENSCPRG00005011893) #28	UBL3 (ENSCPRG00005011867) #29	KATNAL1 (ENSCPRG00005011821) #30	ENSCPRG00005011754 #31	USPL1 (ENSCPRG00005011746) #32	ALOX5AP (ENSCPRG00005011719) #33	MEDAG (ENSCPRG00005011713) #34	ENSCPRG00005011707	ENSCPRG00005011705	ENSCPRG00005011697 #36	HSPH1 (ENSCPRG00005011679) #37
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.ob.b #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.ob.b #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00960000191986	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Abingdon island giant tortoise	MODERN SPECIES	2506	GPR12 (ENSCABG00000000730) #9	USP12 (ENSCABG00000000741) #10	ENSCABG00000001199	RPL21 (ENSCABG00000001202) ##11	RASL11A (ENSCABG00000001207) #12	ENSCABG00000001212	ENSCABG00000001216 #13	ENSCABG00000001221 #13	MTIF3 (ENSCABG00000001226) #14	LNX2 (ENSCABG00000001232) #15	ENSCABG00000001360	GSX1 (ENSCABG00000001364) #17	ENSCABG00000001367	CDX2 (ENSCABG00000001373) #19	FLT3 (ENSCABG00000001407) #21	PAN3 (ENSCABG00000001412) #22	FLT1 (ENSCABG00000001419) #23	ENSCABG00000001441	POMP (ENSCABG00000001444) #24	SLC46A3 (ENSCABG00000001447) #25	MTUS2 (ENSCABG00000001449) #27
Goode s thornscrub tortoise	MODERN SPECIES		CDK8 (ENSGEVG00005000884)	WASF3 (ENSGEVG00005000927) #7	GPR12 (ENSGEVG00005000941) #9	USP12 (ENSGEVG00005000973) #10	RPL21 (ENSGEVG00005001010) ##11	RASL11A (ENSGEVG00005001037) #12	ENSGEVG00005001047	GTF3A (ENSGEVG00005001061) #13	MTIF3 (ENSGEVG00005001075) #14	LNX2 (ENSGEVG00005001093) #15	ENSGEVG00005001122	GSX1 (ENSGEVG00005001138) #17	ENSGEVG00005001158	CDX2 (ENSGEVG00005001187) #19	FLT3 (ENSGEVG00005001236) #21	PAN3 (ENSGEVG00005001290) #22	FLT1 (ENSGEVG00005001326) #23	POMP (ENSGEVG00005001361) #24	SLC46A3 (ENSGEVG00005001382) #25	ENSGEVG00005001400 #27	SLC7A1 (ENSGEVG00005001419) #28	UBL3 (ENSGEVG00005001443) #29	KATNAL1 (ENSGEVG00005001464) #30	ENSGEVG00005001495 #31	USPL1 (ENSGEVG00005001581) #32	ALOX5AP (ENSGEVG00005001628) #33	TEX26 (ENSGEVG00005001648) #35	ENSGEVG00005001666 #36	HSPH1 (ENSGEVG00005001710) #37	B3GLCT (ENSGEVG00005001778)	ENSGEVG00005001840
Emydidae	ANCESTRAL SPECIES	19	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.ob.a #10	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37	ENSGT00940000155499
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	67	ENSTMTG00000004982	ENSTMTG00000005003	ENSTMTG00000005088 #7	ENSTMTG00000005108 #9	ENSTMTG00000005117 #10	ENSTMTG00000005134 ##11	ENSTMTG00000005157 #12	ENSTMTG00000005188 #13	ENSTMTG00000005240 #14	ENSTMTG00000005258 #15	ENSTMTG00000005273	ENSTMTG00000005288 #17	ENSTMTG00000005297	ENSTMTG00000005305 #19	ENSTMTG00000005366 #21	ENSTMTG00000005429 #22	ENSTMTG00000005491 #23	ENSTMTG00000006119 #24	ENSTMTG00000006140 #25	ENSTMTG00000006174 #27	ENSTMTG00000006264 #28	ENSTMTG00000006312 #29	ENSTMTG00000006340 #30	ENSTMTG00000006532 #31	ENSTMTG00000006543 #32	ENSTMTG00000006555 #33	ENSTMTG00000006577 #34	TEX26 (ENSTMTG00000006652) #35	ENSTMTG00000006703 #36	ENSTMTG00000006768 #37	ENSTMTG00000006967
Three-toed box turtle	MODERN SPECIES	66	ENSTMTG00000014793	ENSTMTG00000014812	ENSTMTG00000014850 #7	ENSTMTG00000014868 #9	ENSTMTG00000014879 #10	ENSTMTG00000014924 ##11	ENSTMTG00000014944 #12	ENSTMTG00000014959 #13	ENSTMTG00000014974 #14	ENSTMTG00000014981 #15	ENSTMTG00000014992	ENSTMTG00000014999 #17	ENSTMTG00000015011	ENSTMTG00000015025 #19	ENSTMTG00000015105 #21	ENSTMTG00000015220 #22	ENSTMTG00000016099 #23	ENSTMTG00000016991 #24	ENSTMTG00000017009 #25	ENSTMTG00000017027 #27	ENSTMTG00000017052 #28	ENSTMTG00000017059	ENSTMTG00000017063 #29	ENSTMTG00000017086 #30	ENSTMTG00000017266 #31	ENSTMTG00000017281 #32	ENSTMTG00000017295 #33	ENSTMTG00000017306 #34	ENSTMTG00000017322	ENSTMTG00000017339 #36	ENSTMTG00000017377 #37
painted turtle	MODERN SPECIES		RNF6 (ENSCPBG00000020502)	ENSCPBG00000020495	WASF3 (ENSCPBG00000020488) #7	GPR12 (ENSCPBG00000020487) #9	USP12 (ENSCPBG00000020485) #10	ENSCPBG00000020481 ##11	RASL11A (ENSCPBG00000020480) #12	GTF3A (ENSCPBG00000020478) #13	MTIF3 (ENSCPBG00000020476) #14	LNX2 (ENSCPBG00000020474) #15	ENSCPBG00000020470	GSX1 (ENSCPBG00000020469) #17	ENSCPBG00000020468	CDX2 (ENSCPBG00000020467) #19	FLT3 (ENSCPBG00000020464) #21	PAN3 (ENSCPBG00000020461) #22	FLT1 (ENSCPBG00000020453) #23	POMP (ENSCPBG00000020448) #24	SLC46A3 (ENSCPBG00000020446) #25	ENSCPBG00000020439 #27	SLC7A1 (ENSCPBG00000020435) #28	UBL3 (ENSCPBG00000020434) #29	KATNAL1 (ENSCPBG00000020433) #30	ENSCPBG00000020432 #31	USPL1 (ENSCPBG00000020428) #32	ALOX5AP (ENSCPBG00000020426) #33	MEDAG (ENSCPBG00000020425) #34	TEX26 (ENSCPBG00000020423) #35	ENSCPBG00000020420 #36	HSPH1 (ENSCPBG00000020414) #37	B3GLCT (ENSCPBG00000020407)
Chinese turtle	MODERN SPECIES	2233	RNF6 (ENSPSIG00000010388)	CDK8 (ENSPSIG00000010808)	WASF3 (ENSPSIG00000010814) #7	GPR12 (ENSPSIG00000001794) #9	ENSPSIG00000010914	USP12 (ENSPSIG00000010921) #10	RPL21 (ENSPSIG00000011259) ##11	RASL11A (ENSPSIG00000011613) #12	GTF3A (ENSPSIG00000011722) #13	MTIF3 (ENSPSIG00000011725) #14	LNX2 (ENSPSIG00000011733) #15	ENSPSIG00000011964	ENSPSIG00000012283	CDX2 (ENSPSIG00000012291) #19	FLT3 (ENSPSIG00000012352) #21	PAN3 (ENSPSIG00000012768) #22	FLT1 (ENSPSIG00000012931) #23	POMP (ENSPSIG00000014079) #24	SLC46A3 (ENSPSIG00000014278) #25
Anura	ANCESTRAL SPECIES	27	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00390000014424 #14	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00390000010734 #24	ENSGT00950000183096.a.a.c.b #25	ENSGT00950000183026.A.b ##27	ENSGT00950000183026.B #27	ENSGT00940000155349 #28	ENSGT00390000004952.b #29	ENSGT00940000156630 #30	ENSGT00950000183120 #31	ENSGT00390000002316 #32	ENSGT00940000158706 #33	ENSGT00390000018451 #34	ENSGT00390000009484 #35	ENSGT00940000162967 #36	ENSGT00940000159635 #37
Frog	MODERN SPECIES	2	gpr185a (ENSXETG00000042585) #9	usp12 (ENSXETG00000009799) #10	mtif3 (ENSXETG00000031401) #14	rpl21 (ENSXETG00000009802) ##11	rasl11a (ENSXETG00000030983) #12	ENSXETG00000041520	gtf3a (ENSXETG00000032930) #13	lnx2 (ENSXETG00000031406) #15	polr1d.1 (ENSXETG00000025998)	gsx1 (ENSXETG00000035623)	pdx1 (ENSXETG00000011787)	cdx2 (ENSXETG00000040504) #19	urad (ENSXETG00000037731) #20	thrb (ENSXETG00000039734)	flt3 (ENSXETG00000047257) #21	pan3 (ENSXETG00000011794) #22	flt1 (ENSXETG00000011791)	slc46a3 (ENSXETG00000032137) #25	ENSXETG00000037834	ENSXETG00000044437 ##27	cyb5d1 (ENSXETG00000005518) #27	slc7a1 (ENSXETG00000005504) #28	ENSXETG00000042114	ENSXETG00000045339	ubl3 (ENSXETG00000026000) #29	ENSXETG00000049168	katnal1 (ENSXETG00000031073) #30	hmgb1 (ENSXETG00000019166) #31	uspl1 (ENSXETG00000039559) #32	alox5ap (ENSXETG00000026001) #33	ENSXETG00000026002 #34
Leishan spiny toad	MODERN SPECIES	5	MTIF3 (ENSLLEG00000016013) #14	ENSLLEG00000016061 ##11	RASL11A (ENSLLEG00000016136) #12	GTF3A (ENSLLEG00000016196) #13	ENSLLEG00000016300	LNX2 (ENSLLEG00000016331) #15	ZC3H12C (ENSLLEG00000016516)	ENSLLEG00000016679	ENSLLEG00000016738	ENSLLEG00000016821	ENSLLEG00000016853	CDX2 (ENSLLEG00000016885) #19	ENSLLEG00000016939 #20	ENSLLEG00000016972 #20	FLT3 (ENSLLEG00000017049) #21	PAN3 (ENSLLEG00000017751) #22	ENSLLEG00000020497 #23	ENSLLEG00000020604	ENSLLEG00000020637	ENSLLEG00000020656 #24	SLC46A3 (ENSLLEG00000020815) #25	ENSLLEG00000020871	ENSLLEG00000020904	ENSLLEG00000020950 ##27	ENSLLEG00000021070 #27	SLC7A1 (ENSLLEG00000021147) #28	UBL3 (ENSLLEG00000021251) #29	ENSLLEG00000021425	KATNAL1 (ENSLLEG00000021451) #30	ENSLLEG00000021593 #31	ENSLLEG00000021717 #32
Coelacanth	MODERN SPECIES	366		WASF3 (ENSLACG00000001570) #7	GPR12 (ENSLACG00000007730) #9	ENSLACG00000009540	USP12 (ENSLACG00000011615) #10	RPL21 (ENSLACG00000012678) ##11	RASL11A (ENSLACG00000013026) #12	GTF3A (ENSLACG00000014594) #13	MTIF3 (ENSLACG00000014694) #14	LNX2 (ENSLACG00000015015) #15	si:ch211-140b10.6 (ENSLACG00000015642)	GSX1 (ENSLACG00000016379) #17	pdx1 (ENSLACG00000016610)	CDX2 (ENSLACG00000016728) #19	urad (ENSLACG00000022307) #20	PAN3 (ENSLACG00000017156) #22	FLT1 (ENSLACG00000017415) #23
Actinopterygii	ANCESTRAL SPECIES	89	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a #10	ENSGT00940000164592	ENSGT00950000182922.b ##11	ENSGT00940000161208 #12	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00940000158381 #15	ENSGT00940000170353	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000159385	ENSGT00390000017765	ENSGT00940000156371	ENSGT00940000162182	ENSGT00940000170508	ENSGT00940000153251.a	ENSGT00940000160950
Neopterygii	ANCESTRAL SPECIES	55	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647 #13	ENSGT00390000014424 #14	ENSGT00390000003643	ENSGT00940000154361.A #17	ENSGT00940000161261 #19	ENSGT00390000002395 #20	ENSGT00940000158381 #15	ENSGT00940000170353	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000159385	ENSGT00390000017765	ENSGT00940000154936	ENSGT00940000154103.a
Osteoglossocephalai	ANCESTRAL SPECIES	99	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000155647.bb #13	ENSGT00390000014424 #14	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000158381 #15	ENSGT00940000170353	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00390000017765	ENSGT00940000159385
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	67	ENSGT00940000161555	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.c #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00950000182922.b ##11	ENSGT00940000155647.bb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000160575 #21	ENSGT00390000001504.c #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00390000017765
Asian bonytongue	MODERN SPECIES	16	boc (ENSSFOG00015016338)	ENSSFOG00015016258	spice1 (ENSSFOG00015016226)	SHISA2 (ENSSFOG00015027466)	ATP8A2 (ENSSFOG00015016128)	rnf6 (ENSSFOG00015016098)	cdk8 (ENSSFOG00015016005)	WASF3 (ENSSFOG00015015972) #7	GPR12 (ENSSFOG00015015928) #9	rpl21 (ENSSFOG00015029845) ##11	gtf3aa (ENSSFOG00015030594) #13	lnx2a (ENSSFOG00015015882) #15	si:ch211-140b10.6 (ENSSFOG00015015872)	pdx1 (ENSSFOG00015026366)	urad (ENSSFOG00015015860) #20	pan3 (ENSSFOG00015015792) #22	flt1 (ENSSFOG00015015683) #23	ENSSFOG00015015655	TMPRSS7 (ENSSFOG00015015588)	SPATA13 (ENSSFOG00015015560)	tagln3b (ENSSFOG00015030501)	vclb (ENSSFOG00015015428)	adkb (ENSSFOG00015015386)	KAT6B (ENSSFOG00015015355)	ENSSFOG00015015346	ENSSFOG00015015198	DUSP13 (ENSSFOG00015028570)	ENSSFOG00015027548	ENSSFOG00015015159	SAMD8 (ENSSFOG00015015129)	VDAC2 (ENSSFOG00015015102)
P. kingsleyae	MODERN SPECIES	1048												ENSPKIG00000008431	urad (ENSPKIG00000008419) #20	pdx1 (ENSPKIG00000008406)	ENSPKIG00000008367 #21	pan3 (ENSPKIG00000008329) #22
Osteoglossiformes	ANCESTRAL SPECIES	203	ENSGT00940000156040.f	ENSGT00940000160633.c.b	ENSGT00390000004986	ENSGT00940000159028	ENSGT00940000164655	ENSGT00870000136493.c	ENSGT00940000156285	ENSGT00940000159370.a	ENSGT00530000063174.a.l	ENSGT00950000183121.b.b.b.b.x	ENSGT00530000063666.b.db	ENSGT00940000164731.e	ENSGT01050000244868	ENSGT00940000154826	ENSGT00390000014424 #14	ENSGT00390000001504.d #22
P. kingsleyae	MODERN SPECIES	323	poglut3 (ENSPKIG00000019239)	ENSPKIG00000019201	ENSPKIG00000019177	lipia (ENSPKIG00000019149)	MAP7D2 (ENSPKIG00000019101)	ENSPKIG00000019062	RPS6KA3 (ENSPKIG00000019006)	pdha1a (ENSPKIG00000018960)	sat1a.2 (ENSPKIG00000018924)	ENSPKIG00000018826	ENSPKIG00000018747	cst14a.1 (ENSPKIG00000018715)	ENSPKIG00000018693	mtif3 (ENSPKIG00000018672) #14	ENSPKIG00000018655	pan3 (ENSPKIG00000018576) #22	ENSPKIG00000018545	ENSPKIG00000018532
Asian bonytongue	MODERN SPECIES	18	ENSSFOG00015025700	ENSSFOG00015031058	RPS6KA3 (ENSSFOG00015013306)	pld6 (ENSSFOG00015013389)	pdha1a (ENSSFOG00015013412)	sat1b (ENSSFOG00015028647)	sat1a.2 (ENSSFOG00015013511)	apooa (ENSSFOG00015013529)	klhl15 (ENSSFOG00015013554)	ENSSFOG00015013578	ptgdsb.1 (ENSSFOG00015013652)	cst14a.1 (ENSSFOG00015013664)	ENSSFOG00015029480	ENSSFOG00015029601 #14	ENSSFOG00015013695	pan3 (ENSSFOG00015013716) #22	ENSSFOG00015013788	clec14a (ENSSFOG00015013793)	sec23a (ENSSFOG00015013820)	srp54 (ENSSFOG00015013920)	zgc:109986 (ENSSFOG00015013998)	BAZ1A (ENSSFOG00015014035)	cfl2 (ENSSFOG00015030770)	snx6 (ENSSFOG00015014115)	eapp (ENSSFOG00015014177)	sptssa (ENSSFOG00015026974)	egln3 (ENSSFOG00015032021)	NPAS3 (ENSSFOG00015032174)	AKAP6 (ENSSFOG00015014266)	ARHGAP5 (ENSSFOG00015014323)	nubpl (ENSSFOG00015014340)
Clupeocephala	ANCESTRAL SPECIES	175	ENSGT00940000161555	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00940000170353	ENSGT00940000160575 #21	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911
Euteleosteomorpha	ANCESTRAL SPECIES	36	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911
Acanthomorphata	ANCESTRAL SPECIES	17	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a.e.a
Euacanthomorphacea	ANCESTRAL SPECIES	16	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a.e.a
Percomorphaceae	ANCESTRAL SPECIES	24	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Percomorphaceae_B	ANCESTRAL SPECIES	20	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Ovalentaria	ANCESTRAL SPECIES	21	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Ovalentaria_B	ANCESTRAL SPECIES	20	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000182467	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b
Pomacentridae	ANCESTRAL SPECIES	11	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000182467	ENSGT00940000154103.a	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00940000157709.i
Pomacentridae_A	ANCESTRAL SPECIES	8	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000182467	ENSGT00940000154103.a	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00940000157709.i
Amphiprion	ANCESTRAL SPECIES	7	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000182467	ENSGT00940000154103.a	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00940000157709.i
Orange clownfish	MODERN SPECIES	14	spice1 (ENSAPEG00000019524)	SHISA2 (ENSAPEG00000019549)	ATP8A2 (ENSAPEG00000019602)	rnf6 (ENSAPEG00000019812)	cdk8 (ENSAPEG00000019833)	wasf3b (ENSAPEG00000019876) #7	GPR12 (ENSAPEG00000019891) #9	usp12a (ENSAPEG00000019904) #10	rpl21 (ENSAPEG00000019936) ##11	gtf3ab (ENSAPEG00000019970) #13	lnx2a (ENSAPEG00000019988) #15	si:ch211-140b10.6 (ENSAPEG00000020039)	pdx1 (ENSAPEG00000020046)	urad (ENSAPEG00000020052) #20	ENSAPEG00000020068	pan3 (ENSAPEG00000020111) #22	flt1 (ENSAPEG00000020139) #23	ENSAPEG00000020233	ENSAPEG00000020254	ENSAPEG00000020271	ENSAPEG00000020286	tagln3a (ENSAPEG00000020301)	ENSAPEG00000020326	tagln3b (ENSAPEG00000020342)	ythdf3 (ENSAPEG00000020352)	bhlhe22 (ENSAPEG00000020388)	armc1 (ENSAPEG00000020463)	mtfr1 (ENSAPEG00000020481)	pde7a (ENSAPEG00000020507)	trim55b (ENSAPEG00000020533)	crhb (ENSAPEG00000020537)
Clown anemonefish	MODERN SPECIES	2547					cdk8 (ENSAOCG00000017760)	wasf3b (ENSAOCG00000017773) #7	GPR12 (ENSAOCG00000017782) #9	usp12a (ENSAOCG00000017803) #10	rpl21 (ENSAOCG00000017829) ##11	gtf3ab (ENSAOCG00000017841) #13	lnx2a (ENSAOCG00000017887) #15	si:ch211-140b10.6 (ENSAOCG00000017903)	pdx1 (ENSAOCG00000017908)	urad (ENSAOCG00000017917) #20	ENSAOCG00000017941	pan3 (ENSAOCG00000002825) #22
Spiny chromis	MODERN SPECIES	213	spice1 (ENSAPOG00000001760)	SHISA2 (ENSAPOG00000001748)	ATP8A2 (ENSAPOG00000024511)	rnf6 (ENSAPOG00000024448)	cdk8 (ENSAPOG00000024441)	wasf3b (ENSAPOG00000024422) #7	GPR12 (ENSAPOG00000024412) #9	usp12a (ENSAPOG00000024409) #10	rpl21 (ENSAPOG00000024402) ##11	gtf3ab (ENSAPOG00000024391) #13	lnx2a (ENSAPOG00000024314) #15	si:ch211-140b10.6 (ENSAPOG00000024281)	pdx1 (ENSAPOG00000024271)	urad (ENSAPOG00000024266) #20	ENSAPOG00000024259	pan3 (ENSAPOG00000024239) #22	flt1 (ENSAPOG00000024197) #23	ENSAPOG00000024164	TMPRSS7 (ENSAPOG00000024148)	ENSAPOG00000024115	c1qtnf9 (ENSAPOG00000024076)	ENSAPOG00000024058	tagln3a (ENSAPOG00000024048)	tagln3b (ENSAPOG00000000732)	ythdf3 (ENSAPOG00000024006)	bhlhe22 (ENSAPOG00000023947)
Bicolor damselfish	MODERN SPECIES	62							GPR12 (ENSSPAG00000015103) #9	usp12a (ENSSPAG00000015077) #10	rpl21 (ENSSPAG00000015031) ##11	gtf3ab (ENSSPAG00000014953) #13	lnx2a (ENSSPAG00000014924) #15	si:ch211-140b10.6 (ENSSPAG00000014913)	pdx1 (ENSSPAG00000014899)	urad (ENSSPAG00000014880) #20	ENSSPAG00000014844	pan3 (ENSSPAG00000014762) #22
Cichlidae	ANCESTRAL SPECIES	18	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000182467	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	20	ENSGT00390000006207.c.a	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000182467	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	19	ENSGT00390000006207.c.a	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000182467	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b
Haplochromini	ANCESTRAL SPECIES	21	ENSGT00390000006207.c.a	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000182467	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b
Burton s mouthbrooder	MODERN SPECIES	270	spice1 (ENSHBUG00000017318)	SHISA2 (ENSHBUG00000017332)	ATP8A2 (ENSHBUG00000018016)	rnf6 (ENSHBUG00000018070)	cdk8 (ENSHBUG00000018142)	wasf3b (ENSHBUG00000018160) #7	GPR12 (ENSHBUG00000018176) #9	usp12a (ENSHBUG00000000986) #10	rpl21 (ENSHBUG00000000537) ##11	gtf3ab (ENSHBUG00000018273) #13	lnx2a (ENSHBUG00000018329) #15	si:ch211-140b10.6 (ENSHBUG00000018338)	pdx1 (ENSHBUG00000018351)	urad (ENSHBUG00000018343) #20	ENSHBUG00000018369	pan3 (ENSHBUG00000018423) #22	flt1 (ENSHBUG00000018437) #23	ENSHBUG00000018455	ENSHBUG00000018474	ENSHBUG00000018491	ENSHBUG00000018503	ENSHBUG00000018524	c1qtnf9 (ENSHBUG00000018532)	tagln3a (ENSHBUG00000018536)	tagln3b (ENSHBUG00000018562)	ythdf3 (ENSHBUG00000018631)	bhlhe22 (ENSHBUG00000018650)	armc1 (ENSHBUG00000018656)	mtfr1 (ENSHBUG00000018721)	pde7a (ENSHBUG00000018834)	trim55b (ENSHBUG00000018844)
Haplochromini_A	ANCESTRAL SPECIES	21	ENSGT00940000158810	ENSGT00390000006207.c.a	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000182467	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b
P. nyererei	MODERN SPECIES	302	boc (ENSPNYG00000003898)	spice1 (ENSPNYG00000003845)	SHISA2 (ENSPNYG00000003832)	ATP8A2 (ENSPNYG00000003743)	rnf6 (ENSPNYG00000003715)	cdk8 (ENSPNYG00000003660)	wasf3b (ENSPNYG00000003634) #7	GPR12 (ENSPNYG00000003617) #9	usp12a (ENSPNYG00000003584) #10	rpl21 (ENSPNYG00000003537) ##11	gtf3ab (ENSPNYG00000003480) #13	lnx2a (ENSPNYG00000003429) #15	si:ch211-140b10.6 (ENSPNYG00000003407)	pdx1 (ENSPNYG00000003394)	urad (ENSPNYG00000003397) #20	pan3 (ENSPNYG00000003342) #22	flt1 (ENSPNYG00000003141) #23	ENSPNYG00000003101	ENSPNYG00000003087	ENSPNYG00000003066	ENSPNYG00000003051	ENSPNYG00000003035	c1qtnf9 (ENSPNYG00000003010)	tagln3a (ENSPNYG00000002997)	tagln3b (ENSPNYG00000002985)	ythdf3 (ENSPNYG00000002949)	bhlhe22 (ENSPNYG00000002914)	armc1 (ENSPNYG00000002883)	mtfr1 (ENSPNYG00000002857)	pde7a (ENSPNYG00000002806)	trim55b (ENSPNYG00000002793)
Haplochromini_B	ANCESTRAL SPECIES	18	ENSGT00940000158810	ENSGT00390000006207.c.a	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Zebra mbuna	MODERN SPECIES		boc (ENSMZEG00005021944)	spice1 (ENSMZEG00005021942)	SHISA2 (ENSMZEG00005021941)	ATP8A2 (ENSMZEG00005021937)	rnf6 (ENSMZEG00005021933)	cdk8 (ENSMZEG00005021927)	wasf3b (ENSMZEG00005021919) #7	GPR12 (ENSMZEG00005021917) #9	usp12a (ENSMZEG00005021913) #10	rpl21 (ENSMZEG00005021908) ##11	gtf3ab (ENSMZEG00005021906) #13	lnx2a (ENSMZEG00005021902) #15	si:ch211-140b10.6 (ENSMZEG00005021900)	pdx1 (ENSMZEG00005021892)	urad (ENSMZEG00005021895) #20	pan3 (ENSMZEG00005021885) #22	flt1 (ENSMZEG00005021867) #23	ENSMZEG00005021860	ENSMZEG00005021857	ENSMZEG00005021855	ENSMZEG00005021852	ENSMZEG00005021850	c1qtnf9 (ENSMZEG00005021849)	tagln3a (ENSMZEG00005021846)	tagln3b (ENSMZEG00005021842)	ythdf3 (ENSMZEG00005021836)	bhlhe22 (ENSMZEG00005021832)	armc1 (ENSMZEG00005021829)	mtfr1 (ENSMZEG00005021824)	pde7a (ENSMZEG00005021791)	trim55b (ENSMZEG00005021785)
Eastern happy	MODERN SPECIES	21	spice1 (ENSACLG00000026702)	SHISA2 (ENSACLG00000026696)	ATP8A2 (ENSACLG00000026526)	rnf6 (ENSACLG00000026519)	cdk8 (ENSACLG00000026495)	wasf3b (ENSACLG00000026485) #7	GPR12 (ENSACLG00000026478) #9	usp12a (ENSACLG00000026460) #10	rpl21 (ENSACLG00000026444) ##11	gtf3ab (ENSACLG00000026436) #13	lnx2a (ENSACLG00000026401) #15	si:ch211-140b10.6 (ENSACLG00000026398)	urad (ENSACLG00000026387) #20	pdx1 (ENSACLG00000026382)	ENSACLG00000026361	pan3 (ENSACLG00000026314) #22	ENSACLG00000026260	ENSACLG00000026248	ENSACLG00000026231	ENSACLG00000026223	ENSACLG00000026212	ENSACLG00000026194	ENSACLG00000026184	c1qtnf9 (ENSACLG00000026181)	tagln3a (ENSACLG00000026174)	tagln3b (ENSACLG00000026155)	ythdf3 (ENSACLG00000026145)	bhlhe22 (ENSACLG00000026131)	armc1 (ENSACLG00000026121)	mtfr1 (ENSACLG00000026111)	pde7a (ENSACLG00000026048)
Lyretail cichlid	MODERN SPECIES	323	boc (ENSNBRG00000023027)	spice1 (ENSNBRG00000023047)	SHISA2 (ENSNBRG00000023056)	ATP8A2 (ENSNBRG00000023069)	rnf6 (ENSNBRG00000023098)	cdk8 (ENSNBRG00000023105)	wasf3b (ENSNBRG00000023115) #7	GPR12 (ENSNBRG00000023121) #9	usp12a (ENSNBRG00000023131) #10	rpl21 (ENSNBRG00000023147) ##11	gtf3ab (ENSNBRG00000023177) #13	lnx2a (ENSNBRG00000023213) #15	si:ch211-140b10.6 (ENSNBRG00000023228)	pdx1 (ENSNBRG00000023242)	urad (ENSNBRG00000023250) #20	pan3 (ENSNBRG00000023258) #22	flt1 (ENSNBRG00000023280) #23	ENSNBRG00000023322	ENSNBRG00000023328	ENSNBRG00000023336	c1qtnf9 (ENSNBRG00000023347)	ENSNBRG00000023358	tagln3a (ENSNBRG00000023372)	tagln3b (ENSNBRG00000023427)	ythdf3 (ENSNBRG00000023433)	bhlhe22 (ENSNBRG00000023456)	armc1 (ENSNBRG00000023460)	mtfr1 (ENSNBRG00000023468)	pde7a (ENSNBRG00000023477)	trim55b (ENSNBRG00000023485)	crhb (ENSNBRG00000023491)
Nile tilapia	MODERN SPECIES	21	ATP8A2 (ENSONIG00000014106)	rnf6 (ENSONIG00000014121)	cdk8 (ENSONIG00000014123)	wasf3b (ENSONIG00000014127) #7	GPR12 (ENSONIG00000020418) #9	usp12a (ENSONIG00000014128) #10	rpl21 (ENSONIG00000014130) ##11	gtf3ab (ENSONIG00000014134) #13	lnx2a (ENSONIG00000014132) #15	si:ch211-140b10.6 (ENSONIG00000040238)	pdx1 (ENSONIG00000014137)	urad (ENSONIG00000014138) #20	ENSONIG00000034807	ENSONIG00000036369	ENSONIG00000028459	pan3 (ENSONIG00000014139) #22	flt1 (ENSONIG00000014141) #23	ENSONIG00000014158	ENSONIG00000014165	ENSONIG00000014168	c1qtnf9 (ENSONIG00000014169)	ENSONIG00000034939	tagln3a (ENSONIG00000014172)	tagln3b (ENSONIG00000014173)	ythdf3 (ENSONIG00000014175)	ENSONIG00000035809	bhlhe22 (ENSONIG00000020419)	armc1 (ENSONIG00000014178)	mtfr1 (ENSONIG00000014180)	pde7a (ENSONIG00000014181)	trim55b (ENSONIG00000014185)
Midas cichlid	MODERN SPECIES	363	spice1 (ENSACIG00000021669)	SHISA2 (ENSACIG00000021688)	ATP8A2 (ENSACIG00000021702)	rnf6 (ENSACIG00000021751)	cdk8 (ENSACIG00000021765)	wasf3b (ENSACIG00000021790) #7	GPR12 (ENSACIG00000021857) #9	usp12a (ENSACIG00000021864) #10	rpl21 (ENSACIG00000021885) ##11	gtf3ab (ENSACIG00000021913) #13	lnx2a (ENSACIG00000021939) #15	si:ch211-140b10.6 (ENSACIG00000021953)	pdx1 (ENSACIG00000021962)	urad (ENSACIG00000021969) #20	ENSACIG00000021981	pan3 (ENSACIG00000021996) #22	flt1 (ENSACIG00000022019) #23	ENSACIG00000022112	ENSACIG00000022136	SPATA13 (ENSACIG00000022203)	c1qtnf9 (ENSACIG00000022219)	ENSACIG00000022230	tagln3a (ENSACIG00000022237)	tagln3b (ENSACIG00000022255)	ythdf3 (ENSACIG00000022287)	bhlhe22 (ENSACIG00000022297)	armc1 (ENSACIG00000022301)	mtfr1 (ENSACIG00000022323)	pde7a (ENSACIG00000022347)	trim55b (ENSACIG00000022361)	crhb (ENSACIG00000022392)
Atherinomorphae	ANCESTRAL SPECIES	19	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Oryzias	ANCESTRAL SPECIES	18	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Oryzias_a	ANCESTRAL SPECIES	16	ENSGT00390000015759	ENSGT00940000158810	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Japanese Medaka HdrR	MODERN SPECIES	12	SHISA2 (ENSORLG00000009065)	ATP8A2 (ENSORLG00000009034)	rnf6 (ENSORLG00000008902)	cdk8 (ENSORLG00000008885)	wasf3b (ENSORLG00000008849) #7	GPR12 (ENSORLG00000008826) #9	usp12a (ENSORLG00000008821) #10	rpl21 (ENSORLG00000008802) ##11	gtf3ab (ENSORLG00000008788) #13	lnx2a (ENSORLG00000008783) #15	si:ch211-140b10.6 (ENSORLG00000008770)	urad (ENSORLG00000008761) #20	pdx1 (ENSORLG00000027056)	ENSORLG00000024815	ENSORLG00000022644	pan3 (ENSORLG00000008758) #22	flt1 (ENSORLG00000008730) #23	ENSORLG00000008718	ENSORLG00000008713	ENSORLG00000027215	ENSORLG00000008698	tagln3a (ENSORLG00000008670)	tagln3b (ENSORLG00000008654)	ythdf3 (ENSORLG00000008640)	bhlhe22 (ENSORLG00000008625)	armc1 (ENSORLG00000008620)	mtfr1 (ENSORLG00000008598)	pde7a (ENSORLG00000008573)	ENSORLG00000028624	trim55b (ENSORLG00000008523)	crhb (ENSORLG00000008503)
Chinese medaka	MODERN SPECIES	1041	naa50 (ENSOSIG00000016686)	USF3 (ENSOSIG00000016697)	boc (ENSOSIG00000016703)	spice1 (ENSOSIG00000016706)	SHISA2 (ENSOSIG00000016711)	ATP8A2 (ENSOSIG00000016918)	rnf6 (ENSOSIG00000021376)	cdk8 (ENSOSIG00000021415)	wasf3b (ENSOSIG00000021582) #7	GPR12 (ENSOSIG00000021583) #9	usp12a (ENSOSIG00000021601) #10	rpl21 (ENSOSIG00000021604) ##11	gtf3ab (ENSOSIG00000021608) #13	lnx2a (ENSOSIG00000021609) #15	si:ch211-140b10.6 (ENSOSIG00000021611)	pan3 (ENSOSIG00000021629) #22	flt1 (ENSOSIG00000021671) #23	ENSOSIG00000021682	TMPRSS7 (ENSOSIG00000021686)	ENSOSIG00000021692	c1qtnf9 (ENSOSIG00000021720)	ENSOSIG00000021723	tagln3a (ENSOSIG00000021736)	tagln3b (ENSOSIG00000021746)	ythdf3 (ENSOSIG00000021760)	bhlhe22 (ENSOSIG00000021765)	armc1 (ENSOSIG00000021782)	mtfr1 (ENSOSIG00000021789)	pde7a (ENSOSIG00000021826)	trim55b (ENSOSIG00000021834)	rrs1 (ENSOSIG00000021839)
Oryzias_b	ANCESTRAL SPECIES	16	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Indian medaka	MODERN SPECIES	14	spice1 (ENSOMEG00000007043)	SHISA2 (ENSOMEG00000007061)	ATP8A2 (ENSOMEG00000007276)	rnf6 (ENSOMEG00000007346)	cdk8 (ENSOMEG00000007387)	wasf3b (ENSOMEG00000007420) #7	GPR12 (ENSOMEG00000007430) #9	usp12a (ENSOMEG00000007466) #10	rpl21 (ENSOMEG00000007496) ##11	gtf3ab (ENSOMEG00000007523) #13	lnx2a (ENSOMEG00000007585) #15	si:ch211-140b10.6 (ENSOMEG00000000839)	urad (ENSOMEG00000007646) #20	pdx1 (ENSOMEG00000007658)	ENSOMEG00000007697	pan3 (ENSOMEG00000007798) #22	flt1 (ENSOMEG00000007898) #23	ENSOMEG00000007924	TMPRSS7 (ENSOMEG00000007969)	ENSOMEG00000008091	ENSOMEG00000008127	c1qtnf9 (ENSOMEG00000000826)	tagln3a (ENSOMEG00000008161)	tagln3b (ENSOMEG00000008183)	ythdf3 (ENSOMEG00000008212)	bhlhe22 (ENSOMEG00000008239)	armc1 (ENSOMEG00000008291)	mtfr1 (ENSOMEG00000000204)	pde7a (ENSOMEG00000008428)	trim55b (ENSOMEG00000008486)	crhb (ENSOMEG00000008509)
Javanese ricefish	MODERN SPECIES	12	spice1 (ENSOJAG00000017100)	SHISA2 (ENSOJAG00000017116)	ATP8A2 (ENSOJAG00000017288)	rnf6 (ENSOJAG00000019897)	cdk8 (ENSOJAG00000019911)	wasf3b (ENSOJAG00000019989) #7	GPR12 (ENSOJAG00000019997) #9	usp12a (ENSOJAG00000020020) #10	rpl21 (ENSOJAG00000020175) ##11	gtf3ab (ENSOJAG00000020199) #13	lnx2a (ENSOJAG00000020216) #15	si:ch211-140b10.6 (ENSOJAG00000020245)	pdx1 (ENSOJAG00000020248)	urad (ENSOJAG00000020253) #20	ENSOJAG00000020262	pan3 (ENSOJAG00000020316) #22	flt1 (ENSOJAG00000020693) #23	ENSOJAG00000020819	TMPRSS7 (ENSOJAG00000009896)	ENSOJAG00000009916	c1qtnf9 (ENSOJAG00000009993)	ENSOJAG00000010106	tagln3a (ENSOJAG00000010122)	tagln3b (ENSOJAG00000010179)	ythdf3 (ENSOJAG00000010195)	bhlhe22 (ENSOJAG00000010209)	armc1 (ENSOJAG00000010217)	mtfr1 (ENSOJAG00000010234)	pde7a (ENSOJAG00000010274)	trim55b (ENSOJAG00000010482)	crhb (ENSOJAG00000010502)
Cyprinodontiformes	ANCESTRAL SPECIES	20	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Aplocheiloidei	ANCESTRAL SPECIES	18	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00390000005213
Mangrove rivulus	MODERN SPECIES	7	spice1 (ENSKMAG00000009498)	SHISA2 (ENSKMAG00000009487)	ATP8A2 (ENSKMAG00000009265)	rnf6 (ENSKMAG00000009214)	cdk8 (ENSKMAG00000009153)	wasf3b (ENSKMAG00000009131) #7	GPR12 (ENSKMAG00000009119) #9	usp12a (ENSKMAG00000009072) #10	rpl21 (ENSKMAG00000009040) ##11	gtf3ab (ENSKMAG00000009030) #13	lnx2a (ENSKMAG00000008967) #15	si:ch211-140b10.6 (ENSKMAG00000008930)	pdx1 (ENSKMAG00000008908)	urad (ENSKMAG00000008917) #20	ENSKMAG00000008881	pan3 (ENSKMAG00000008813) #22	flt1 (ENSKMAG00000008730) #23	ENSKMAG00000008697	ENSKMAG00000008677	ENSKMAG00000008661	ENSKMAG00000008567	c1qtnf9 (ENSKMAG00000008540)	tagln3a (ENSKMAG00000008512)	tagln3b (ENSKMAG00000008491)	ythdf3 (ENSKMAG00000008447)	bhlhe22 (ENSKMAG00000008404)	armc1 (ENSKMAG00000008358)	mtfr1 (ENSKMAG00000008341)	pde7a (ENSKMAG00000008317)	crhb (ENSKMAG00000008274)	trim55b (ENSKMAG00000008251)
Turquoise killifish	MODERN SPECIES	1617	USF3 (ENSNFUG00015021968)	SPICE1 (ENSNFUG00015021978)	SHISA2 (ENSNFUG00015021991)	ATP8A2 (ENSNFUG00015022113)	rnf6 (ENSNFUG00015023929)	cdk8 (ENSNFUG00015023965)	WASF3 (ENSNFUG00015024083) #7	GPR12 (ENSNFUG00015024085) #9	USP12A (ENSNFUG00015024086) #10	RPL21 (ENSNFUG00015024091) ##11	gtf3ab (ENSNFUG00015024101) #13	LNX2A (ENSNFUG00015024113) #15	si:ch211-140b10.6 (ENSNFUG00015024120)	pdx1 (ENSNFUG00015024122)	urad (ENSNFUG00015024126) #20	pan3 (ENSNFUG00015006219) #22	ENSNFUG00015006655	ENSNFUG00015006799	SPATA13 (ENSNFUG00015006819)	c1qtnf9 (ENSNFUG00015006880)	TAGLN3B (ENSNFUG00015006889)	ABHD10B (ENSNFUG00015006896)	ythdf3 (ENSNFUG00015006897)	ENSNFUG00015006900	ENSNFUG00015006904	bhlhe22 (ENSNFUG00015006906)	ARMC1 (ENSNFUG00015006911)	mtfr1 (ENSNFUG00015006916)	pde7a (ENSNFUG00015006924)	TRIM55B (ENSNFUG00015006930)	CRHB (ENSNFUG00015006934)
Cyprinodontoidei	ANCESTRAL SPECIES	25	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Poeciliinae	ANCESTRAL SPECIES	20	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104.h	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Poecilia	ANCESTRAL SPECIES	17	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104.h	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
NAME_6	ANCESTRAL SPECIES	22	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104.h	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Amazon molly	MODERN SPECIES	315	spice1 (ENSPFOG00000009036)	SHISA2 (ENSPFOG00000009024)	ATP8A2 (ENSPFOG00000008201)	rnf6 (ENSPFOG00000008161)	cdk8 (ENSPFOG00000008071)	wasf3b (ENSPFOG00000008013) #7	GPR12 (ENSPFOG00000020724) #9	usp12a (ENSPFOG00000007941) #10	rpl21 (ENSPFOG00000007900) ##11	gtf3ab (ENSPFOG00000007819) #13	lnx2a (ENSPFOG00000007692) #15	si:ch211-140b10.6 (ENSPFOG00000007686)	pdx1 (ENSPFOG00000007668)	urad (ENSPFOG00000007646) #20	ENSPFOG00000023223	pan3 (ENSPFOG00000007327) #22	flt1 (ENSPFOG00000006735) #23	ENSPFOG00000006625	TMPRSS7 (ENSPFOG00000006463)	ENSPFOG00000006292	c1qtnf9 (ENSPFOG00000006247)	tagln3a (ENSPFOG00000006186)	tagln3b (ENSPFOG00000006141)	ythdf3 (ENSPFOG00000006082)	bhlhe22 (ENSPFOG00000020723)	armc1 (ENSPFOG00000005936)	mtfr1 (ENSPFOG00000005858)	pde7a (ENSPFOG00000005566)	trim55b (ENSPFOG00000005350)	crhb (ENSPFOG00000005551)	rrs1 (ENSPFOG00000020722)
Sailfin molly	MODERN SPECIES	1502																pan3 (ENSPLAG00000021189) #22	flt1 (ENSPLAG00000021248) #23	ENSPLAG00000021272	ENSPLAG00000021284	ENSPLAG00000021299	ENSPLAG00000021328	ENSPLAG00000021333	c1qtnf9 (ENSPLAG00000021340)	tagln3a (ENSPLAG00000021356)	tagln3b (ENSPLAG00000021366)
Guppy	MODERN SPECIES	451	spice1 (ENSPREG00000019030)	SHISA2 (ENSPREG00000019052)	ATP8A2 (ENSPREG00000019110)	rnf6 (ENSPREG00000019333)	cdk8 (ENSPREG00000019351)	wasf3b (ENSPREG00000019391) #7	GPR12 (ENSPREG00000019422) #9	usp12a (ENSPREG00000019433) #10	rpl21 (ENSPREG00000019457) ##11	gtf3ab (ENSPREG00000019485) #13	lnx2a (ENSPREG00000019499) #15	si:ch211-140b10.6 (ENSPREG00000019527)	pdx1 (ENSPREG00000019531)	urad (ENSPREG00000019535) #20	ENSPREG00000019544	pan3 (ENSPREG00000019582) #22	flt1 (ENSPREG00000019634) #23	ENSPREG00000019676	ENSPREG00000019688	ENSPREG00000019701	c1qtnf9 (ENSPREG00000019719)	ENSPREG00000019732	tagln3a (ENSPREG00000019741)	tagln3b (ENSPREG00000019751)	ythdf3 (ENSPREG00000019781)	bhlhe22 (ENSPREG00000019823)	armc1 (ENSPREG00000019843)	mtfr1 (ENSPREG00000019873)	pde7a (ENSPREG00000019903)	trim55b (ENSPREG00000019936)	crhb (ENSPREG00000019949)
Platyfish	MODERN SPECIES	13	spice1 (ENSXMAG00000010030)	SHISA2 (ENSXMAG00000010029)	ATP8A2 (ENSXMAG00000009957)	rnf6 (ENSXMAG00000026532)	cdk8 (ENSXMAG00000009914)	wasf3b (ENSXMAG00000009903) #7	GPR12 (ENSXMAG00000020160) #9	usp12a (ENSXMAG00000009886) #10	rpl21 (ENSXMAG00000024769) ##11	gtf3ab (ENSXMAG00000029776) #13	lnx2a (ENSXMAG00000009830) #15	si:ch211-140b10.6 (ENSXMAG00000012886)	pdx1 (ENSXMAG00000019562)	urad (ENSXMAG00000012887) #20	ENSXMAG00000026989	pan3 (ENSXMAG00000009821) #22	flt1 (ENSXMAG00000009774) #23	ENSXMAG00000026961	ENSXMAG00000024991	ENSXMAG00000009729	ENSXMAG00000028798	c1qtnf9 (ENSXMAG00000009725)	tagln3a (ENSXMAG00000009711)	tagln3b (ENSXMAG00000009705)	ythdf3 (ENSXMAG00000009698)	bhlhe22 (ENSXMAG00000020159)	armc1 (ENSXMAG00000024206)	mtfr1 (ENSXMAG00000009687)	pde7a (ENSXMAG00000009670)	trim55b (ENSXMAG00000009661)	crhb (ENSXMAG00000020158)
NAME_4	ANCESTRAL SPECIES	31	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Mummichog	MODERN SPECIES	981	boc (ENSFHEG00000017028)	spice1 (ENSFHEG00000016952)	SHISA2 (ENSFHEG00000016943)	ATP8A2 (ENSFHEG00000016932)	rnf6 (ENSFHEG00000016710)	cdk8 (ENSFHEG00000016706)	wasf3b (ENSFHEG00000016672) #7	GPR12 (ENSFHEG00000016645) #9	rpl21 (ENSFHEG00000016636) ##11	gtf3ab (ENSFHEG00000016618) #13	lnx2a (ENSFHEG00000000744) #15	si:ch211-140b10.6 (ENSFHEG00000016563)	pdx1 (ENSFHEG00000016561)	urad (ENSFHEG00000016554) #20	ENSFHEG00000016549	pan3 (ENSFHEG00000016539) #22	flt1 (ENSFHEG00000016507) #23	ENSFHEG00000016495	ENSFHEG00000016477	ENSFHEG00000016463	c1qtnf9 (ENSFHEG00000016460)	tagln3a (ENSFHEG00000016453)	tagln3b (ENSFHEG00000016424)	ythdf3 (ENSFHEG00000016395)
Sheepshead minnow	MODERN SPECIES	423															ENSCVAG00000018642	pan3 (ENSCVAG00000018630) #22	flt1 (ENSCVAG00000018525) #23	ENSCVAG00000018249	ENSCVAG00000018223	ENSCVAG00000018207	c1qtnf9 (ENSCVAG00000018169)	ENSCVAG00000018162	tagln3a (ENSCVAG00000018154)	tagln3b (ENSCVAG00000018146)	ythdf3 (ENSCVAG00000018114)	bhlhe22 (ENSCVAG00000018075)	armc1 (ENSCVAG00000018066)	mtfr1 (ENSCVAG00000018038)	pde7a (ENSCVAG00000018027)	trim55b (ENSCVAG00000017917)	crhb (ENSCVAG00000017904)
Percomorphaceae_C	ANCESTRAL SPECIES	21	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Percomorphaceae_D	ANCESTRAL SPECIES	21	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Anabantaria	ANCESTRAL SPECIES	22	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Anabantoidei	ANCESTRAL SPECIES	20	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00390000005213
Climbing perch	MODERN SPECIES	11	ENSATEG00000010180	ENSATEG00000010391	rnf6 (ENSATEG00000026758)	ENSATEG00000028138	cdk8 (ENSATEG00000010432)	wasf3b (ENSATEG00000010470) #7	GPR12 (ENSATEG00000010476) #9	usp12a (ENSATEG00000010491) #10	rpl21 (ENSATEG00000028448) ##11	gtf3ab (ENSATEG00000010552) #13	lnx2a (ENSATEG00000010632) #15	si:ch211-140b10.6 (ENSATEG00000028994)	pdx1 (ENSATEG00000010719)	urad (ENSATEG00000027814) #20	ENSATEG00000010746	pan3 (ENSATEG00000010812) #22	flt1 (ENSATEG00000010898) #23	ENSATEG00000026354	ENSATEG00000030180	ENSATEG00000011139	c1qtnf9 (ENSATEG00000026859)	ENSATEG00000011168	tagln3b (ENSATEG00000011456)	ythdf3 (ENSATEG00000026605)	bhlhe22 (ENSATEG00000011525)	armc1 (ENSATEG00000011533)	mtfr1 (ENSATEG00000011587)	pde7a (ENSATEG00000011609)	trim55b (ENSATEG00000011663)	crhb (ENSATEG00000011692)	rrs1 (ENSATEG00000011743)
Siamese fighting fish	MODERN SPECIES	15	spice1 (ENSBSLG00000001491)	SHISA2 (ENSBSLG00000001487)	ATP8A2 (ENSBSLG00000001396)	rnf6 (ENSBSLG00000001348)	cdk8 (ENSBSLG00000001285)	wasf3b (ENSBSLG00000000954) #7	GPR12 (ENSBSLG00000000953) #9	usp12a (ENSBSLG00000000944) #10	rpl21 (ENSBSLG00000000936) ##11	gtf3ab (ENSBSLG00000000930) #13	lnx2a (ENSBSLG00000000925) #15	si:ch211-140b10.6 (ENSBSLG00000000923)	pdx1 (ENSBSLG00000000920)	urad (ENSBSLG00000000918) #20	ENSBSLG00000000911	pan3 (ENSBSLG00000000827) #22	flt1 (ENSBSLG00000000721) #23	ENSBSLG00000000691	ENSBSLG00000000631	SPATA13 (ENSBSLG00000000518)	c1qtnf9 (ENSBSLG00000022630)	tagln3a (ENSBSLG00000022619)	tagln3b (ENSBSLG00000022615)	ythdf3 (ENSBSLG00000022595)	bhlhe22 (ENSBSLG00000022584)	armc1 (ENSBSLG00000022574)	mtfr1 (ENSBSLG00000022568)	pde7a (ENSBSLG00000022441)	trim55b (ENSBSLG00000022411)	crhb (ENSBSLG00000022400)	rrs1 (ENSBSLG00000022393)
Zig-zag eel	MODERN SPECIES	12	boc (ENSMAMG00000001403)	spice1 (ENSMAMG00000001367)	ENSMAMG00000001341	ENSMAMG00000001238	rnf6 (ENSMAMG00000001204)	cdk8 (ENSMAMG00000001143)	wasf3b (ENSMAMG00000001084) #7	GPR12 (ENSMAMG00000001074) #9	usp12a (ENSMAMG00000001039) #10	rpl21 (ENSMAMG00000001006) ##11	lnx2a (ENSMAMG00000000961) #15	si:ch211-140b10.6 (ENSMAMG00000025733)	pdx1 (ENSMAMG00000000879)	urad (ENSMAMG00000000909) #20	ENSMAMG00000000808	pan3 (ENSMAMG00000000722) #22	flt1 (ENSMAMG00000000600) #23	ENSMAMG00000000572	ENSMAMG00000000563	ENSMAMG00000000534	ENSMAMG00000000512	c1qtnf9 (ENSMAMG00000000477)	TAGLN3 (ENSMAMG00000028378)	tagln3b (ENSMAMG00000028300)	ythdf3 (ENSMAMG00000000414)	bhlhe22 (ENSMAMG00000000373)	armc1 (ENSMAMG00000000359)	pde7a (ENSMAMG00000026344)	trim55b (ENSMAMG00000023106)	crhb (ENSMAMG00000023105)	ENSMAMG00000026444
Carangaria	ANCESTRAL SPECIES	21	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Pleuronectoidei	ANCESTRAL SPECIES	12	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000178537	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Tongue sole	MODERN SPECIES	13	ATP8A2 (ENSCSEG00000016616)	rnf6 (ENSCSEG00000016589)	cdk8 (ENSCSEG00000016558)	wasf3b (ENSCSEG00000016546) #7	GPR12 (ENSCSEG00000016542) #9	usp12a (ENSCSEG00000016531) #10	rpl21 (ENSCSEG00000016515) ##11	gtf3ab (ENSCSEG00000016508) #13	lnx2a (ENSCSEG00000016493) #15	si:ch211-140b10.6 (ENSCSEG00000016484)	urad (ENSCSEG00000016481) #20	pdx1 (ENSCSEG00000016475)	urad (ENSCSEG00000016472) #20	urad (ENSCSEG00000016469) #20	ENSCSEG00000016456	pan3 (ENSCSEG00000016421) #22	rmc1 (ENSCSEG00000016397)	CLVS1 (ENSCSEG00000016382)	ASPH (ENSCSEG00000016331)	ENSCSEG00000016300	ssr1 (ENSCSEG00000016267)	scn5lab (ENSCSEG00000016240)	ENSCSEG00000016211	ENSCSEG00000016171	ezh2 (ENSCSEG00000016120)	cul1a (ENSCSEG00000016078)	ENSCSEG00000016067	cldn11b (ENSCSEG00000016055)	ENSCSEG00000016043	rpl22l1 (ENSCSEG00000015879)	ENSCSEG00000015853
Turbot	MODERN SPECIES	13	naa50 (ENSSMAG00000014183)	boc (ENSSMAG00000014203)	spice1 (ENSSMAG00000014217)	ENSSMAG00000014239	ENSSMAG00000014252	rnf6 (ENSSMAG00000034678)	cdk8 (ENSSMAG00000014316)	wasf3b (ENSSMAG00000014332) #7	GPR12 (ENSSMAG00000014361) #9	usp12a (ENSSMAG00000014366) #10	rpl21 (ENSSMAG00000014422) ##11	lnx2a (ENSSMAG00000014440) #15	ENSSMAG00000025935	pdx1 (ENSSMAG00000024878)	urad (ENSSMAG00000026893) #20	pan3 (ENSSMAG00000014517) #22	flt1 (ENSSMAG00000014621) #23	ENSSMAG00000033055	ENSSMAG00000014705	c1qtnf9 (ENSSMAG00000014717)	ENSSMAG00000014719	ENSSMAG00000014729	tagln3b (ENSSMAG00000031538)	ythdf3 (ENSSMAG00000014999)	bhlhe22 (ENSSMAG00000015034)	armc1 (ENSSMAG00000015046)	mtfr1 (ENSSMAG00000015077)	pde7a (ENSSMAG00000015092)	trim55b (ENSSMAG00000015162)	crhb (ENSSMAG00000015187)	rrs1 (ENSSMAG00000015226)
Carangaria_A	ANCESTRAL SPECIES	15	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Barramundi perch	MODERN SPECIES	47	ENSLCAG00010012184	SHISA2 (ENSLCAG00010012189)	ATP8A2 (ENSLCAG00010012233)	rnf6 (ENSLCAG00010012541)	cdk8 (ENSLCAG00010012572)	wasf3b (ENSLCAG00010012627) #7	GPR12 (ENSLCAG00010012632) #9	usp12a (ENSLCAG00010012644) #10	rpl21 (ENSLCAG00010012661) ##11	gtf3ab (ENSLCAG00010012668) #13	lnx2a (ENSLCAG00010012670) #15	si:ch211-140b10.6 (ENSLCAG00010012678)	pdx1 (ENSLCAG00010012680)	urad (ENSLCAG00010012682) #20	ENSLCAG00010012686	pan3 (ENSLCAG00010012702) #22	flt1 (ENSLCAG00010012748) #23	ENSLCAG00010012890	ENSLCAG00010012893	ENSLCAG00010012898	ENSLCAG00010012902	c1qtnf9 (ENSLCAG00010012910)	tagln3a (ENSLCAG00010012913)	tagln3b (ENSLCAG00010012920)	ythdf3 (ENSLCAG00010012926)	bhlhe22 (ENSLCAG00010012930)	armc1 (ENSLCAG00010012934)	mtfr1 (ENSLCAG00010012941)	pde7a (ENSLCAG00010012962)	trim55b (ENSLCAG00010013060)	crhb (ENSLCAG00010013065)
Seriola	ANCESTRAL SPECIES	36	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Greater amberjack	MODERN SPECIES	33	spice1 (ENSSDUG00000015166)	SHISA2 (ENSSDUG00000015155)	ATP8A2 (ENSSDUG00000015091)	rnf6 (ENSSDUG00000015066)	cdk8 (ENSSDUG00000015017)	wasf3b (ENSSDUG00000014968) #7	GPR12 (ENSSDUG00000014949) #9	usp12a (ENSSDUG00000014921) #10	rpl21 (ENSSDUG00000014894) ##11	gtf3ab (ENSSDUG00000014874) #13	lnx2a (ENSSDUG00000014849) #15	si:ch211-140b10.6 (ENSSDUG00000014841)	pdx1 (ENSSDUG00000014822)	urad (ENSSDUG00000014815) #20	ENSSDUG00000014776	pan3 (ENSSDUG00000014721) #22	flt1 (ENSSDUG00000014557) #23	ENSSDUG00000014539	ENSSDUG00000014527	ENSSDUG00000014519	ENSSDUG00000014498	ENSSDUG00000014478	c1qtnf9 (ENSSDUG00000014460)	tagln3a (ENSSDUG00000014444)	tagln3b (ENSSDUG00000014424)	ythdf3 (ENSSDUG00000014403)	bhlhe22 (ENSSDUG00000014390)	armc1 (ENSSDUG00000014378)	mtfr1 (ENSSDUG00000014365)	pde7a (ENSSDUG00000014337)	trim55b (ENSSDUG00000014326)
Yellowtail amberjack	MODERN SPECIES	2962	boc (ENSSLDG00000003818)	spice1 (ENSSLDG00000003858)	SHISA2 (ENSSLDG00000003874)	ATP8A2 (ENSSLDG00000003891)	rnf6 (ENSSLDG00000004031)	cdk8 (ENSSLDG00000004062)	wasf3b (ENSSLDG00000004150) #7	GPR12 (ENSSLDG00000004197) #9	usp12a (ENSSLDG00000004212) #10	rpl21 (ENSSLDG00000004270) ##11	gtf3ab (ENSSLDG00000004329) #13	lnx2a (ENSSLDG00000004432) #15	si:ch211-140b10.6 (ENSSLDG00000004483)	pdx1 (ENSSLDG00000004503)	urad (ENSSLDG00000004527) #20	pan3 (ENSSLDG00000004560) #22	flt1 (ENSSLDG00000004662) #23	ENSSLDG00000004888	ENSSLDG00000004911	ENSSLDG00000004932	c1qtnf9 (ENSSLDG00000004956)	ENSSLDG00000004974	tagln3a (ENSSLDG00000004987)	tagln3b (ENSSLDG00000004998)	ythdf3 (ENSSLDG00000005029)	bhlhe22 (ENSSLDG00000005073)	armc1 (ENSSLDG00000005079)	mtfr1 (ENSSLDG00000005114)	pde7a (ENSSLDG00000005138)	trim55b (ENSSLDG00000005201)	crhb (ENSSLDG00000005217)
Eupercaria	ANCESTRAL SPECIES	20	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Tetraodontidae	ANCESTRAL SPECIES	18	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00390000005213
Fugu	MODERN SPECIES	1	spice1 (ENSTRUG00000001581)	shisa2 (ENSTRUG00000028233)	ATP8A2 (ENSTRUG00000001682)	rnf6 (ENSTRUG00000021431)	cdk8 (ENSTRUG00000003969)	wasf3b (ENSTRUG00000004356) #7	GPR12 (ENSTRUG00000004806) #9	usp12a (ENSTRUG00000004837) #10	rpl21 (ENSTRUG00000005068) ##11	gtf3ab (ENSTRUG00000005241) #13	lnx2a (ENSTRUG00000005500) #15	si:ch211-140b10.6 (ENSTRUG00000031975)	pdx1 (ENSTRUG00000005693)	urad (ENSTRUG00000005741) #20	ENSTRUG00000022468	pan3 (ENSTRUG00000005777) #22	flt1 (ENSTRUG00000006184) #23	ENSTRUG00000022900	ENSTRUG00000007318	c1qtnf9 (ENSTRUG00000032423)	tagln3a (ENSTRUG00000007680)	abhd10 (ENSTRUG00000007781)	ythdf3 (ENSTRUG00000007870)	bhlhe22 (ENSTRUG00000020602)	armc1 (ENSTRUG00000007973)	mtfr1 (ENSTRUG00000008104)	pde7a (ENSTRUG00000008323)	trim55b (ENSTRUG00000008556)	crhb (ENSTRUG00000008766)	rrs1 (ENSTRUG00000008796)	MYBL1 (ENSTRUG00000008816)
Tetraodon	MODERN SPECIES	21	USF3 (ENSTNIG00000012720)	boc (ENSTNIG00000012719)	ATP8A2 (ENSTNIG00000012718)	rnf6 (ENSTNIG00000012717)	cdk8 (ENSTNIG00000012716)	wasf3b (ENSTNIG00000012715) #7	GPR12 (ENSTNIG00000012714) #9	usp12a (ENSTNIG00000012713) #10	rpl21 (ENSTNIG00000012712) ##11	gtf3ab (ENSTNIG00000012711) #13	lnx2a (ENSTNIG00000012710) #15	si:ch211-140b10.6 (ENSTNIG00000012709)	pdx1 (ENSTNIG00000012708)	urad (ENSTNIG00000012707) #20	ENSTNIG00000012706	pan3 (ENSTNIG00000012705) #22	ENSTNIG00000012704	ENSTNIG00000001040	ENSTNIG00000012703	SPATA13 (ENSTNIG00000012702)	c1qtnf9 (ENSTNIG00000012701)	tagln3a (ENSTNIG00000012700)	tagln3b (ENSTNIG00000012699)	ythdf3 (ENSTNIG00000012698)	bhlhe22 (ENSTNIG00000012697)	armc1 (ENSTNIG00000012696)	mtfr1 (ENSTNIG00000012695)	trim55b (ENSTNIG00000004027)	crhb (ENSTNIG00000000114)	rrs1 (ENSTNIG00000004026)	ENSTNIG00000004025
Eupecaria_A	ANCESTRAL SPECIES	19	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Ballan wrasse	MODERN SPECIES	8	SHISA2 (ENSLBEG00000018324)	ENSLBEG00000018301	ATP8A2 (ENSLBEG00000018024)	rnf6 (ENSLBEG00000017896)	cdk8 (ENSLBEG00000017850)	wasf3b (ENSLBEG00000017818) #7	GPR12 (ENSLBEG00000017797) #9	usp12a (ENSLBEG00000017748) #10	rpl21 (ENSLBEG00000017677) ##11	gtf3ab (ENSLBEG00000017641) #13	lnx2a (ENSLBEG00000017565) #15	si:ch211-140b10.6 (ENSLBEG00000017505)	urad (ENSLBEG00000017466) #20	pdx1 (ENSLBEG00000017455)	ENSLBEG00000017422	pan3 (ENSLBEG00000017330) #22	flt1 (ENSLBEG00000017266) #23	ENSLBEG00000017232	ENSLBEG00000017212	ENSLBEG00000017193	ENSLBEG00000017159	ENSLBEG00000017113	ENSLBEG00000017078	c1qtnf9 (ENSLBEG00000017061)	tagln3a (ENSLBEG00000017047)	tagln3b (ENSLBEG00000017030)	ythdf3 (ENSLBEG00000017003)	bhlhe22 (ENSLBEG00000016906)	armc1 (ENSLBEG00000016882)	mtfr1 (ENSLBEG00000016847)	pde7a (ENSLBEG00000016771)
Eupecaria_B	ANCESTRAL SPECIES	19	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Perciformes	ANCESTRAL SPECIES	21	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Cottioidei	ANCESTRAL SPECIES	21	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00390000005213
Lumpfish	MODERN SPECIES	12	spice1 (ENSCLMG00005021221)	SHISA2 (ENSCLMG00005021222)	ATP8A2 (ENSCLMG00005021233)	rnf6 (ENSCLMG00005021749)	cdk8 (ENSCLMG00005021750)	wasf3b (ENSCLMG00005021795) #7	GPR12 (ENSCLMG00005021797) #9	usp12a (ENSCLMG00005021799) #10	rpl21 (ENSCLMG00005021802) ##11	gtf3ab (ENSCLMG00005021803) #13	lnx2a (ENSCLMG00005021805) #15	si:ch211-140b10.6 (ENSCLMG00005021808)	pdx1 (ENSCLMG00005021810)	urad (ENSCLMG00005021812) #20	ENSCLMG00005021814	pan3 (ENSCLMG00005021822) #22	flt1 (ENSCLMG00005021994) #23	ENSCLMG00005021998	ENSCLMG00005021999	ENSCLMG00005022001	ENSCLMG00005022008	c1qtnf9 (ENSCLMG00005022049)	tagln3a (ENSCLMG00005022058)	tagln3b (ENSCLMG00005022059)	ythdf3 (ENSCLMG00005022060)	bhlhe22 (ENSCLMG00005022062)	armc1 (ENSCLMG00005022063)	mtfr1 (ENSCLMG00005022064)	pde7a (ENSCLMG00005022067)	trim55b (ENSCLMG00005022074)	crhb (ENSCLMG00005022080)
Stickleback	MODERN SPECIES	20	SHISA2 (ENSGACG00000003182)	ATP8A2 (ENSGACG00000003172)	rnf6 (ENSGACG00000003167)	cdk8 (ENSGACG00000003151)	wasf3b (ENSGACG00000003147) #7	GPR12 (ENSGACG00000003145) #9	usp12a (ENSGACG00000003114) #10	rpl21 (ENSGACG00000003110) ##11	gtf3ab (ENSGACG00000003107) #13	lnx2a (ENSGACG00000003102) #15	si:ch211-140b10.6 (ENSGACG00000003100)	pdx1 (ENSGACG00000003099)	urad (ENSGACG00000003095) #20	ENSGACG00000003094	ENSGACG00000003090	pan3 (ENSGACG00000003081) #22	flt1 (ENSGACG00000003066) #23	ENSGACG00000003060	TMPRSS7 (ENSGACG00000003053)	SPATA13 (ENSGACG00000003047)	ENSGACG00000003045	c1qtnf9 (ENSGACG00000003040)	tagln3a (ENSGACG00000003016)	tagln3b (ENSGACG00000003004)	ythdf3 (ENSGACG00000002998)	bhlhe22 (ENSGACG00000002995)	armc1 (ENSGACG00000002986)	mtfr1 (ENSGACG00000002983)	pde7a (ENSGACG00000002974)	trim55b (ENSGACG00000002973)	crhb (ENSGACG00000002971)
Perciformes_a	ANCESTRAL SPECIES	22	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Channel bull blenny	MODERN SPECIES	12	USF3 (ENSCGOG00000014700)	boc (ENSCGOG00000014697)	ATP8A2 (ENSCGOG00000014551)	rnf6 (ENSCGOG00000014539)	cdk8 (ENSCGOG00000013483)	wasf3b (ENSCGOG00000013444) #7	GPR12 (ENSCGOG00000013443) #9	usp12a (ENSCGOG00000013238) #10	rpl21 (ENSCGOG00000013214) ##11	gtf3ab (ENSCGOG00000013209) #13	lnx2a (ENSCGOG00000013195) #15	si:ch211-140b10.6 (ENSCGOG00000013192)	pdx1 (ENSCGOG00000013191)	urad (ENSCGOG00000013186) #20	ENSCGOG00000013183	pan3 (ENSCGOG00000012814) #22	flt1 (ENSCGOG00000012713) #23	ENSCGOG00000012688	ENSCGOG00000012678	ENSCGOG00000012676	c1qtnf9 (ENSCGOG00000012661)	tagln3a (ENSCGOG00000012656)	tagln3b (ENSCGOG00000012655)	ENSCGOG00000012652	armc1 (ENSCGOG00000012647)	mtfr1 (ENSCGOG00000012642)	pde7a (ENSCGOG00000012544)	trdmt1 (ENSCGOG00000023751)	RSU1 (ENSCGOG00000023749)	C1QL3 (ENSCGOG00000023744)	ENSCGOG00000023742
Pike perch	MODERN SPECIES	58	spice1 (ENSSLUG00000015828)	SHISA2 (ENSSLUG00000015839)	ATP8A2 (ENSSLUG00000016155)	rnf6 (ENSSLUG00000020940)	cdk8 (ENSSLUG00000020959)	wasf3b (ENSSLUG00000021027) #7	GPR12 (ENSSLUG00000021036) #9	usp12a (ENSSLUG00000021043) #10	rpl21 (ENSSLUG00000021154) ##11	gtf3ab (ENSSLUG00000021162) #13	lnx2a (ENSSLUG00000021166) #15	si:ch211-140b10.6 (ENSSLUG00000021177)	pdx1 (ENSSLUG00000021181)	urad (ENSSLUG00000021183) #20	ENSSLUG00000021188	pan3 (ENSSLUG00000021215) #22	flt1 (ENSSLUG00000001549) #23	ENSSLUG00000001631	ENSSLUG00000001640	ENSSLUG00000001693	c1qtnf9 (ENSSLUG00000001769)	ENSSLUG00000001779	tagln3b (ENSSLUG00000001788)	ythdf3 (ENSSLUG00000001798)	bhlhe22 (ENSSLUG00000001811)	armc1 (ENSSLUG00000001819)	mtfr1 (ENSSLUG00000001832)	pde7a (ENSSLUG00000001856)	trim55b (ENSSLUG00000001906)	crhb (ENSSLUG00000001948)	rrs1 (ENSSLUG00000001952)
Eupecaria_C	ANCESTRAL SPECIES	19	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
Gilthead seabream	MODERN SPECIES	10	spice1 (ENSSAUG00010014521)	SHISA2 (ENSSAUG00010014518)	ATP8A2 (ENSSAUG00010003787)	rnf6 (ENSSAUG00010003475)	cdk8 (ENSSAUG00010003382)	wasf3b (ENSSAUG00010003372) #7	GPR12 (ENSSAUG00010003369) #9	usp12a (ENSSAUG00010003352) #10	gtf3ab (ENSSAUG00010003349) #13	lnx2a (ENSSAUG00010003339) #15	si:ch211-140b10.6 (ENSSAUG00010003336)	rpl21 (ENSSAUG00010003332) ##11	pdx1 (ENSSAUG00010003328)	urad (ENSSAUG00010003327) #20	ENSSAUG00010003325	pan3 (ENSSAUG00010003157) #22	flt1 (ENSSAUG00010003102) #23	ENSSAUG00010003081	ENSSAUG00010003072	ENSSAUG00010002709	c1qtnf9 (ENSSAUG00010002694)	tagln3a (ENSSAUG00010002656)	tagln3b (ENSSAUG00010002645)	ythdf3 (ENSSAUG00010002639)	bhlhe22 (ENSSAUG00010002630)	armc1 (ENSSAUG00010002616)	mtfr1 (ENSSAUG00010025873)	pde7a (ENSSAUG00010025870)	trim55b (ENSSAUG00010025868)	crhb (ENSSAUG00010025867)	rrs1 (ENSSAUG00010025866)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	17	ENSGT00940000158810	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a
European seabass	MODERN SPECIES	8	boc (ENSDLAG00005009502)	spice1 (ENSDLAG00005009486)	ENSDLAG00005009482	ATP8A2 (ENSDLAG00005004031)	rnf6 (ENSDLAG00005003782)	cdk8 (ENSDLAG00005003634)	wasf3b (ENSDLAG00005003612) #7	GPR12 (ENSDLAG00005028722) #9	rpl21 (ENSDLAG00005003438) ##11	usp12a (ENSDLAG00005003488) #10	gtf3ab (ENSDLAG00005003396) #13	lnx2a (ENSDLAG00005003351) #15	si:ch211-140b10.6 (ENSDLAG00005003325)	PRHOXNB (ENSDLAG00005031716) #20	pdx1 (ENSDLAG00005029955)	pan3 (ENSDLAG00005003116) #22	flt1 (ENSDLAG00005002274) #23	ENSDLAG00005002258	ENSDLAG00005002237	ENSDLAG00005002233	c1qtnf9 (ENSDLAG00005034255)	ENSDLAG00005027403	tagln3b (ENSDLAG00005030339)	ythdf3 (ENSDLAG00005002192)	bhlhe22 (ENSDLAG00005002186)	ARMC1 (ENSDLAG00005029775)	mtfr1 (ENSDLAG00005002174)	pde7a (ENSDLAG00005002083)	trim55b (ENSDLAG00005002053)	CRF (ENSDLAG00005032266)	rrs1 (ENSDLAG00005002045)
Large yellow croaker	MODERN SPECIES	494	boc (ENSLCRG00005022248)	spice1 (ENSLCRG00005022249)	SHISA2 (ENSLCRG00005022251)	ATP8A2 (ENSLCRG00005022300)	rnf6 (ENSLCRG00005023065)	cdk8 (ENSLCRG00005023071)	wasf3b (ENSLCRG00005023166) #7	GPR12 (ENSLCRG00005023167) #9	usp12a (ENSLCRG00005023169) #10	rpl21 (ENSLCRG00005023177) ##11	gtf3ab (ENSLCRG00005023178) #13	lnx2a (ENSLCRG00005023179) #15	si:ch211-140b10.6 (ENSLCRG00005023180)	pdx1 (ENSLCRG00005023181)	urad (ENSLCRG00005023182) #20	pan3 (ENSLCRG00005023183) #22	flt1 (ENSLCRG00005023197) #23	ENSLCRG00005023249	TMPRSS7 (ENSLCRG00005023250)	ENSLCRG00005023251	c1qtnf9 (ENSLCRG00005023276)	tagln3b (ENSLCRG00005023277)	ythdf3 (ENSLCRG00005023278)	bhlhe22 (ENSLCRG00005023281)	armc1 (ENSLCRG00005023282)	mtfr1 (ENSLCRG00005023283)	pde7a (ENSLCRG00005023284)	trim55b (ENSLCRG00005023286)	crhb (ENSLCRG00005023287)	rrs1 (ENSLCRG00005023288)	MYBL1 (ENSLCRG00005023290)
Tiger tail seahorse	MODERN SPECIES	133	spice1 (ENSHCOG00000018156)	SHISA2 (ENSHCOG00000018152)	ATP8A2 (ENSHCOG00000018135)	rnf6 (ENSHCOG00000018062)	cdk8 (ENSHCOG00000018055)	wasf3b (ENSHCOG00000017979) #7	GPR12 (ENSHCOG00000017963) #9	usp12a (ENSHCOG00000017948) #10	rpl21 (ENSHCOG00000017908) ##11	gtf3ab (ENSHCOG00000017879) #13	lnx2a (ENSHCOG00000017861) #15	si:ch211-140b10.6 (ENSHCOG00000017786)	pdx1 (ENSHCOG00000017782)	ENSHCOG00000000481 #20	ENSHCOG00000017767	pan3 (ENSHCOG00000017741) #22
Pinecone sodierfish	MODERN SPECIES	12	boc (ENSMMDG00005004971)	spice1 (ENSMMDG00005004976)	SHISA2 (ENSMMDG00005004981)	ATP8A2 (ENSMMDG00005004985)	rnf6 (ENSMMDG00005004988)	cdk8 (ENSMMDG00005005001)	wasf3b (ENSMMDG00005005526) #7	GPR12 (ENSMMDG00005005527) #9	usp12a (ENSMMDG00005005529) #10	rpl21 (ENSMMDG00005005567) ##11	gtf3ab (ENSMMDG00005005571) #13	lnx2a (ENSMMDG00005005578) #15	si:ch211-140b10.6 (ENSMMDG00005005580)	pdx1 (ENSMMDG00005005582)	urad (ENSMMDG00005005583) #20	pan3 (ENSMMDG00005005607) #22	flt1 (ENSMMDG00005006211) #23	ENSMMDG00005006251	ENSMMDG00005006255	ENSMMDG00005006257	c1qtnf9 (ENSMMDG00005006261)	tagln3a (ENSMMDG00005006268)	tagln3b (ENSMMDG00005006272)	ythdf3 (ENSMMDG00005006279)	bhlhe22 (ENSMMDG00005006286)	armc1 (ENSMMDG00005006288)	mtfr1 (ENSMMDG00005006290)	pde7a (ENSMMDG00005006292)	DNAJC5B (ENSMMDG00005006300)	trim55b (ENSMMDG00005006323)	crhb (ENSMMDG00005006332)
Cod	MODERN SPECIES	15	spice1 (ENSGMOG00000031528)	ENSGMOG00000024393	ENSGMOG00000015425	rnf6 (ENSGMOG00000032617)	cdk8 (ENSGMOG00000015383)	wasf3b (ENSGMOG00000015343) #7	GPR12 (ENSGMOG00000005134) #9	usp12a (ENSGMOG00000015314) #10	rpl21 (ENSGMOG00000015298) ##11	gtf3ab (ENSGMOG00000015268) #13	lnx2a (ENSGMOG00000015243) #15	si:ch211-140b10.6 (ENSGMOG00000030301)	pdx1 (ENSGMOG00000015225)	urad (ENSGMOG00000015217) #20	ENSGMOG00000023570	pan3 (ENSGMOG00000015169) #22	ENSGMOG00000028398 #23	ENSGMOG00000030841	ENSGMOG00000015036	ENSGMOG00000015009	ENSGMOG00000029467	ENSGMOG00000027947	c1qtnf9 (ENSGMOG00000014997)	ENSGMOG00000032713	ENSGMOG00000025355	tagln3b (ENSGMOG00000014986)	ythdf3 (ENSGMOG00000014950)	bhlhe22 (ENSGMOG00000014009)	armc1 (ENSGMOG00000009251)	ENSGMOG00000033861	pde7a (ENSGMOG00000029592)
Protacanthopterygii	ANCESTRAL SPECIES	55	ENSGT00390000015759	ENSGT00940000158810	ENSGT01000000219382	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT01000000217346	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000159385.f	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT01060000251044	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154004.a.e.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	431	ENSGT00390000006207	ENSGT00940000157443.d.b.b	ENSGT00940000157332.p	ENSGT00940000158530.x.a	ENSGT00940000157104.f	ENSGT00950000182962.a.a.d.a #7	ENSGT01060000248564.b.a.b.a.a #9	ENSGT00940000153284.a.mc.b.b #10	ENSGT00990000213281	ENSGT00950000182922.b.g.a ##11	ENSGT00940000158381.f #15	ENSGT00390000003643	ENSGT00940000163955.v.b	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504.e #22	ENSGT00940000158713.d #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a.h	ENSGT00940000154936.c.b	ENSGT00940000159385.f.a	ENSGT00390000017765.b.d	ENSGT00940000158777.p
Huchen	MODERN SPECIES	8106																pan3 (ENSHHUG00000001097) #22
Salmoninae_a	ANCESTRAL SPECIES	32	ENSGT00390000006207	ENSGT00940000157443.d.b.b	ENSGT00940000157332.p	ENSGT00940000158530.x.a	ENSGT00940000157104.f	ENSGT00950000182962.a.a.d.a #7	ENSGT01060000248564.b.a.b.a.a #9	ENSGT00940000153284.a.mc.b.b #10	ENSGT00990000213281	ENSGT00950000182922.b.g.a ##11	ENSGT00940000158381.f #15	ENSGT00390000003643	ENSGT00940000163955.v.b	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504.e #22	ENSGT00940000158713.d #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a.h	ENSGT00940000154936.c.b	ENSGT00940000159385.f.a	ENSGT00390000017765.b.d	ENSGT00940000158777.p	ENSGT00940000162962.c.b	ENSGT00390000014100.k.b.b	ENSGT00950000183215.c.a.b.gb	ENSGT00940000157658.cb.b	ENSGT00940000159294.f.b.a	ENSGT00940000159294.e	ENSGT00940000154004.a.e.b.d
Salmo	ANCESTRAL SPECIES	3	ENSGT00390000006207	ENSGT00940000157443.d.b.b	ENSGT00940000157332.p	ENSGT00940000158530.x.a	ENSGT00940000157104.f	ENSGT00950000182962.a.a.d.a #7	ENSGT01060000248564.b.a.b.a.a #9	ENSGT00940000153284.a.mc.b.b #10	ENSGT00990000213281	ENSGT00950000182922.b.g.a ##11	ENSGT00940000158381.f #15	ENSGT00390000003643	ENSGT00940000163955.v.b	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504.e #22	ENSGT00940000158713.d #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a.h	ENSGT00940000154936.c.b	ENSGT00940000159385.f.a	ENSGT00390000017765.b.d	ENSGT00940000158777.p	ENSGT00940000162962.c.b	ENSGT00390000014100.k.b.b	ENSGT00950000183215.c.a.b.gb	ENSGT00940000157658.cb.b	ENSGT00940000159294.e	ENSGT00940000154004.a.e.b.d	ENSGT00940000154473.a.e.b
River trout	MODERN SPECIES	11	USF3 (ENSSTUG00000015751)	boc (ENSSTUG00000015721)	SHISA2 (ENSSTUG00000015716)	ATP8A2 (ENSSTUG00000014529)	rnf6 (ENSSTUG00000014495)	cdk8 (ENSSTUG00000014250)	wasf3b (ENSSTUG00000014223) #7	GPR12 (ENSSTUG00000014219) #9	usp12a (ENSSTUG00000013825) #10	rpl21 (ENSSTUG00000013811) ##11	lnx2a (ENSSTUG00000013760) #15	si:ch211-140b10.6 (ENSSTUG00000013749)	pdx1 (ENSSTUG00000013746)	urad (ENSSTUG00000013742) #20	ENSSTUG00000013713	pan3 (ENSSTUG00000012946) #22	ENSSTUG00000012900 #23	ENSSTUG00000012880	TMPRSS7 (ENSSTUG00000012818)	SPATA13 (ENSSTUG00000012685)	c1qtnf9 (ENSSTUG00000012640)	ENSSTUG00000012622	tagln3b (ENSSTUG00000012612)	ythdf3 (ENSSTUG00000012560)	bhlhe22 (ENSSTUG00000012546)	ENSSTUG00000012544	armc1 (ENSSTUG00000012530)	mtfr1 (ENSSTUG00000012519)	pde7a (ENSSTUG00000011942)	DNAJC5B (ENSSTUG00000011913)	trim55b (ENSSTUG00000011901)
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000101332	ENSSSAG00000018631	ENSSSAG00000084101	ENSSSAG00000087959	cdk8 (ENSSSAG00000010012)	wasf3b (ENSSSAG00000009965) #7	GPR12 (ENSSSAG00000083095) #9	usp12a (ENSSSAG00000009493) #10	ENSSSAG00000009950	rpl21 (ENSSSAG00000009468) ##11	lnx2 (ENSSSAG00000009424) #15	si:ch211-140b10.6 (ENSSSAG00000097523)	pdx1 (ENSSSAG00000085582)	urad (ENSSSAG00000105845) #20	ENSSSAG00000009390	pan3 (ENSSSAG00000008395) #22	flt1 (ENSSSAG00000050652) #23	ENSSSAG00000118034	ENSSSAG00000050738	ENSSSAG00000050759	c1qtnf9 (ENSSSAG00000050775)	tagln3b (ENSSSAG00000050799)	ythdf3 (ENSSSAG00000050805)	bhlhe22 (ENSSSAG00000093997)	ENSSSAG00000103745	armc1 (ENSSSAG00000108474)	mtfr1 (ENSSSAG00000050830)	pde7a (ENSSSAG00000050849)	dnjc5 (ENSSSAG00000052078)	trim55b (ENSSSAG00000052086)	crhb (ENSSSAG00000111884)
Oncorhynchus	ANCESTRAL SPECIES	28	ENSGT00390000006207	ENSGT00940000157443.d.b.b	ENSGT00940000157332.p	ENSGT00940000158530.x.a	ENSGT00940000157104.f	ENSGT00950000182962.a.a.d.a #7	ENSGT01060000248564.b.a.b.a.a #9	ENSGT00940000153284.a.mc.b.b #10	ENSGT00990000213281	ENSGT00950000182922.b.g.a ##11	ENSGT00940000158381.f #15	ENSGT00390000003643	ENSGT00940000163955.v.b	ENSGT00390000002395.f #20	ENSGT00940000167274	ENSGT00390000001504.e #22	ENSGT00940000158713.d #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a.h	ENSGT00940000154936.c.b	ENSGT00940000159385.f.a	ENSGT00390000017765.b.d	ENSGT00940000158777.p	ENSGT00950000184906.C	ENSGT00940000162962.c.b	ENSGT00390000014100.k.b.b	ENSGT00950000183215.c.a.b.gb	ENSGT00940000157658.cb.b	ENSGT00940000159294.f.b.a	ENSGT00940000154004.a.e.b.d
Rainbow trout	MODERN SPECIES	2	ENSOMYG00000039991	ENSOMYG00000071066	ENSOMYG00000038767	rnf6 (ENSOMYG00000061514)	cdk8 (ENSOMYG00000037502)	wasf3b (ENSOMYG00000037357) #7	GPR12 (ENSOMYG00000037338) #9	ENSOMYG00000037326	usp12a (ENSOMYG00000037286) #10	rpl21 (ENSOMYG00000037172) ##11	lnx2a (ENSOMYG00000037222) #15	si:ch211-140b10.6 (ENSOMYG00000037205)	pdx1 (ENSOMYG00000037196)	urad (ENSOMYG00000037193) #20	ENSOMYG00000069972	pan3 (ENSOMYG00000037139) #22	ENSOMYG00000037129 #23	ENSOMYG00000056225	ENSOMYG00000037115	ENSOMYG00000060109	ENSOMYG00000065225	ENSOMYG00000036655	c1qtnf9 (ENSOMYG00000036564)	ENSOMYG00000065387	tagln3b (ENSOMYG00000036538)	ythdf3 (ENSOMYG00000036496)	ENSOMYG00000054189	ENSOMYG00000065309	bhlhe22 (ENSOMYG00000036451)	armc1 (ENSOMYG00000075131)	mtfr1 (ENSOMYG00000036443)
Oncorhynchus_a	ANCESTRAL SPECIES	23	ENSGT00390000006207	ENSGT00940000157443.d.b.b	ENSGT00940000157332.p	ENSGT00940000158530.x.a	ENSGT00940000157104.f	ENSGT00950000182962.a.a.d.a #7	ENSGT01060000248564.b.a.b.a.a #9	ENSGT00940000153284.a.mc.b.b #10	ENSGT00990000213281	ENSGT00950000182922.b.g.a ##11	ENSGT00940000158381.f #15	ENSGT00390000003643	ENSGT00940000163955.v.b	ENSGT00390000002395.f #20	ENSGT00940000167274	ENSGT00390000001504.e #22	ENSGT00940000158713.d #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a.h	ENSGT00940000154936.c.b	ENSGT00940000159385.f.a	ENSGT00390000017765.b.d	ENSGT00940000158777.p	ENSGT00950000184906.C	ENSGT00940000162962.c.b	ENSGT00390000014100.k.b.b	ENSGT00950000183215.c.a.b.gb	ENSGT00940000157658.cb.b	ENSGT00940000159294.f.b.a	ENSGT00940000154004.a.e.b.d
Chinook salmon	MODERN SPECIES	7	SHISA2 (ENSOTSG00005016045)	ATP8A2 (ENSOTSG00005004129)	rnf6 (ENSOTSG00005004051)	cdk8 (ENSOTSG00005003974)	wasf3b (ENSOTSG00005003959) #7	GPR12 (ENSOTSG00005003958) #9	ENSOTSG00005003954	ENSOTSG00005003952	usp12a (ENSOTSG00005003930) #10	rpl21 (ENSOTSG00005003926) ##11	lnx2a (ENSOTSG00005003923) #15	si:ch211-140b10.6 (ENSOTSG00005003918)	pdx1 (ENSOTSG00005003916)	urad (ENSOTSG00005003914) #20	ENSOTSG00005003910	pan3 (ENSOTSG00005002167) #22	ENSOTSG00005002133 #23	ENSOTSG00005002074	TMPRSS7 (ENSOTSG00005045069)	ENSOTSG00005045068	c1qtnf9 (ENSOTSG00005045067)	TAGLN3 (ENSOTSG00005045066)	tagln3b (ENSOTSG00005045065)	ythdf3 (ENSOTSG00005045064)	pctp (ENSOTSG00005045063)	NOG (ENSOTSG00005045062)	cbx2 (ENSOTSG00005045061)	ENPP7 (ENSOTSG00005045060)	bhlhe22 (ENSOTSG00005045058)	armc1 (ENSOTSG00005045056)	mtfr1 (ENSOTSG00005045055)
Coho salmon	MODERN SPECIES	9	spice1 (ENSOKIG00005015143)	SHISA2 (ENSOKIG00005015153)	ATP8A2 (ENSOKIG00005015472)	rnf6 (ENSOKIG00005020863)	cdk8 (ENSOKIG00005020908)	wasf3b (ENSOKIG00005021186) #7	GPR12 (ENSOKIG00005021209) #9	usp12a (ENSOKIG00005021255) #10	ENSOKIG00005021583	rpl21 (ENSOKIG00005021604) ##11	lnx2a (ENSOKIG00005021649) #15	si:ch211-140b10.6 (ENSOKIG00005021700)	pdx1 (ENSOKIG00005021708)	urad (ENSOKIG00005021716) #20	ENSOKIG00005021723	pan3 (ENSOKIG00005021778) #22	flt1 (ENSOKIG00005021987) #23	ENSOKIG00005021991	ENSOKIG00005022005	TMPRSS7 (ENSOKIG00005022015)	ENSOKIG00005022070	TAGLN3 (ENSOKIG00005022247)	ABHD10 (ENSOKIG00005022262)	ythdf3 (ENSOKIG00005022272)	ENSOKIG00005022287	bhlhe22 (ENSOKIG00005022301)	armc1 (ENSOKIG00005022309)	mtfr1 (ENSOKIG00005022318)	pde7a (ENSOKIG00005022356)	DNAJC5B (ENSOKIG00005022635)	trim55b (ENSOKIG00005022678)
Salmoninae	ANCESTRAL SPECIES	149	ENSGT00390000009110.b	ENSGT00390000015759.b	ENSGT00940000158810.d	ENSGT00940000157443.d.b.a	ENSGT00940000157332.o	ENSGT00940000158530.x.b	ENSGT00940000157104.e	ENSGT00950000182962.a.a.d.b #7	ENSGT01060000248564.b.a.b.a.b #9	ENSGT00940000153284.a.mc.b.a #10	ENSGT00950000182922.b.g.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381.e #15	ENSGT00940000163955.v.a	ENSGT00940000160575 #21	ENSGT00390000001504.f #22	ENSGT00940000158713.c #23	ENSGT00940000154103.a.g	ENSGT00940000154936.c.a	ENSGT00940000176911	ENSGT00940000159385.f.b	ENSGT00390000017765.b.c	ENSGT00940000158777.o	ENSGT01060000251044	ENSGT00940000162962.c.b	ENSGT00390000014100.k.b.b	ENSGT00950000183215.c.a.b.gb	ENSGT00940000157658.cb.b	ENSGT00940000159294.f.b.a	ENSGT00940000159294.e	ENSGT00940000154004.a.e.b.d
Salmoninae_a	ANCESTRAL SPECIES	35	ENSGT00390000009110.b	ENSGT00390000015759.b	ENSGT00940000158810.d	ENSGT00940000157443.d.b.a	ENSGT00940000157332.o	ENSGT00940000158530.x.b	ENSGT00940000157104.e	ENSGT00950000182962.a.a.d.b #7	ENSGT01060000248564.b.a.b.a.b #9	ENSGT00940000153284.a.mc.b.a #10	ENSGT00950000182922.b.g.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381.e #15	ENSGT00940000163955.v.a	ENSGT00940000160575 #21	ENSGT00390000001504.f #22	ENSGT00940000158713.c #23	ENSGT00940000154103.a.g	ENSGT00940000154936.c.a	ENSGT00940000176911	ENSGT00940000159385.f.b	ENSGT00390000017765.b.c	ENSGT00940000158777.o	ENSGT01060000251044	ENSGT00940000162962.c.a	ENSGT00390000014100.k.b.a	ENSGT00950000183215.c.a.b.fb	ENSGT00940000157658.cb.a	ENSGT00940000159294.f.b.b	ENSGT00940000154004.a.e.b.c	ENSGT00940000154473.a.e.a
Salmo	ANCESTRAL SPECIES	34	ENSGT00390000009110.b	ENSGT00390000015759.b	ENSGT00940000158810.d	ENSGT00940000157443.d.b.a	ENSGT00940000157332.o	ENSGT00940000158530.x.b	ENSGT00940000157104.e	ENSGT00950000182962.a.a.d.b #7	ENSGT01060000248564.b.a.b.a.b #9	ENSGT00940000153284.a.mc.b.a #10	ENSGT00950000182922.b.g.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381.e #15	ENSGT00940000163955.v.a	ENSGT00940000160575 #21	ENSGT00390000001504.f #22	ENSGT00940000158713.c #23	ENSGT00940000154103.a.g	ENSGT00940000154936.c.a	ENSGT00940000176911	ENSGT00940000159385.f.b	ENSGT00390000017765.b.c	ENSGT00940000158777.o	ENSGT01060000251044	ENSGT00940000162962.c.a	ENSGT00390000014100.k.b.a	ENSGT00950000183215.c.a.b.fb	ENSGT00940000157658.cb.a	ENSGT00940000154004.a.e.b.c	ENSGT00940000154473.a.e.a	ENSGT00390000005213.f
Atlantic salmon	MODERN SPECIES	21	naa50 (ENSSSAG00000077013)	USF3 (ENSSSAG00000099363)	boc (ENSSSAG00000076978)	ENSSSAG00000097118	ENSSSAG00000091684	ENSSSAG00000056659	cdk8 (ENSSSAG00000059349)	wasf3b (ENSSSAG00000059960) #7	GPR12 (ENSSSAG00000102702) #9	rl21 (ENSSSAG00000060203) ##11	usp12 (ENSSSAG00000060005) #10	gtf3ab (ENSSSAG00000060244) #13	pdx1 (ENSSSAG00000095952)	LNX2 (ENSSSAG00000060315) #15	FLT3 (ENSSSAG00000060395) #21	PAN3 (ENSSSAG00000060444) #22	FLT1 (ENSSSAG00000065213) #23	ENSSSAG00000056540	c1qtnf9 (ENSSSAG00000056526)	ENSSSAG00000115980	tagln3b (ENSSSAG00000115887)	ythdf3 (ENSSSAG00000056509)	ENSSSAG00000056506	bhlhe22 (ENSSSAG00000084019)	armc1 (ENSSSAG00000102374)	mtfr1 (ENSSSAG00000080783)	pde7a (ENSSSAG00000080765)	trim55b (ENSSSAG00000080754)	crhb (ENSSSAG00000118338)	ENSSSAG00000080736	sgk3 (ENSSSAG00000080624)
River trout	MODERN SPECIES	36	naa50 (ENSSTUG00000040341)	USF3 (ENSSTUG00000040423)	boc (ENSSTUG00000040429)	SHISA2 (ENSSTUG00000040604)	ATP8A2 (ENSSTUG00000040768)	rnf6 (ENSSTUG00000043621)	cdk8 (ENSSTUG00000043636)	wasf3b (ENSSTUG00000043812) #7	GPR12 (ENSSTUG00000043821) #9	usp12a (ENSSTUG00000043826) #10	rpl21 (ENSSTUG00000043884) ##11	gtf3ab (ENSSTUG00000043892) #13	lnx2a (ENSSTUG00000043910) #15	pdx1 (ENSSTUG00000043933)	flt1 (ENSSTUG00000043943) #23	pan3 (ENSSTUG00000044065) #22	SPATA13 (ENSSTUG00000044436)	c1qtnf9 (ENSSTUG00000044470)	ENSSTUG00000044476	TAGLN3 (ENSSTUG00000044482)	tagln3b (ENSSTUG00000044497)	ythdf3 (ENSSTUG00000044512)	bhlhe22 (ENSSTUG00000044524)	armc1 (ENSSTUG00000044528)	mtfr1 (ENSSTUG00000044545)	pde7a (ENSSTUG00000044560)	ENSSTUG00000044735	trim55b (ENSSTUG00000044744)	crhb (ENSSTUG00000044761)	ENSSTUG00000006627	rrs1 (ENSSTUG00000006632)
Oncorhynchus	ANCESTRAL SPECIES	27	ENSGT00390000009110.b	ENSGT00390000015759.b	ENSGT00940000158810.d	ENSGT00940000157443.d.b.a	ENSGT00940000157332.o	ENSGT00940000158530.x.b	ENSGT00940000157104.e	ENSGT00950000182962.a.a.d.b #7	ENSGT01060000248564.b.a.b.a.b #9	ENSGT00940000153284.a.mc.b.a #10	ENSGT00950000182922.b.g.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381.e #15	ENSGT00940000163955.v.a	ENSGT00940000160575 #21	ENSGT00390000001504.f #22	ENSGT00940000158713.c #23	ENSGT00940000154103.a.g	ENSGT00940000176911	ENSGT00940000154936.c.a	ENSGT00940000159385.f.b	ENSGT00390000017765.b.c	ENSGT00940000158777.o	ENSGT01010000227996	ENSGT00940000162962.c.a	ENSGT00390000014100.k.b.a	ENSGT00950000183215.c.a.b.fb	ENSGT00940000157658.cb.a	ENSGT00940000159294.f.b.b	ENSGT00940000154004.a.e.b.c	ENSGT00940000154473.a.e.a
Rainbow trout	MODERN SPECIES	6	boc (ENSOMYG00000018829)	ENSOMYG00000057770	ENSOMYG00000018805	ENSOMYG00000013132	rnf6 (ENSOMYG00000012644)	cdk8 (ENSOMYG00000012606)	ENSOMYG00000065995	wasf3b (ENSOMYG00000012591) #7	GPR12 (ENSOMYG00000070203) #9	usp12a (ENSOMYG00000012558) #10	rl21 (ENSOMYG00000012541) ##11	gtf3ab (ENSOMYG00000012526) #13	lnx2a (ENSOMYG00000012512) #15	pdx1 (ENSOMYG00000012510)	ENSOMYG00000062335	PAN3 (ENSOMYG00000011351) #22	FLT1 (ENSOMYG00000011130) #23	ENSOMYG00000011054	ENSOMYG00000011019	tagln3b (ENSOMYG00000011016)	ythdf3 (ENSOMYG00000010993)	ENSOMYG00000058181	bhlhe22 (ENSOMYG00000003766)	armc1 (ENSOMYG00000003815)	mtfr1 (ENSOMYG00000003834)	pde7a (ENSOMYG00000003923)	DNAJC5B (ENSOMYG00000004011)	trim55b (ENSOMYG00000004025)	crhb (ENSOMYG00000004052)	rrs1 (ENSOMYG00000073017)	MYBL1 (ENSOMYG00000004144)
Oncorhynchus_a	ANCESTRAL SPECIES	27	ENSGT00390000015759.b	ENSGT00940000158810.d	ENSGT00940000157443.d.b.a	ENSGT01010000229159	ENSGT00940000157332.o	ENSGT00940000158530.x.b	ENSGT00940000157104.e	ENSGT00950000182962.a.a.d.b #7	ENSGT01060000248564.b.a.b.a.b #9	ENSGT00940000153284.a.mc.b.a #10	ENSGT00950000182922.b.g.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381.e #15	ENSGT00940000163955.v.a	ENSGT00940000160575 #21	ENSGT00390000001504.f #22	ENSGT00940000158713.c #23	ENSGT00940000154103.a.g	ENSGT00940000176911	ENSGT00940000154936.c.a	ENSGT00940000159385.f.b	ENSGT00390000017765.b.c	ENSGT00940000158777.o	ENSGT01010000227996	ENSGT00940000162962.c.a	ENSGT00390000014100.k.b.a	ENSGT00950000183215.c.a.b.fb	ENSGT00940000157658.cb.a	ENSGT00940000159294.f.b.b	ENSGT00940000154004.a.e.b.c	ENSGT00940000154473.a.e.a
Chinook salmon	MODERN SPECIES	21	ENSOTSG00005002903	bhlhe22 (ENSOTSG00005002618)	SHISA2 (ENSOTSG00005012358)	ENSOTSG00005012357	ENSOTSG00005012348	rnf6 (ENSOTSG00005012344)	cdk8 (ENSOTSG00005011987)	GPR12 (ENSOTSG00005011986) #9	usp12a (ENSOTSG00005011681) #10	RPL21 (ENSOTSG00005011679) ##11	gtf3ab (ENSOTSG00005011678) #13	lnx2a (ENSOTSG00005011677) #15	pdx1 (ENSOTSG00005011676)	ENSOTSG00005011675	FLT3 (ENSOTSG00005011674) #21	pan3 (ENSOTSG00005011665) #22	ENSOTSG00005011663	flt1 (ENSOTSG00005011660) #23	SPATA13 (ENSOTSG00005011658)	ENSOTSG00005011656	c1qtnf9 (ENSOTSG00005011655)	tagln3a (ENSOTSG00005011654)	tagln3b (ENSOTSG00005011653)	ENSOTSG00005011651	ythdf3 (ENSOTSG00005011650)	ENSOTSG00005011649	ENSOTSG00005011647	ENSOTSG00005011645	ENSOTSG00005011642	ENSOTSG00005011641	and1 (ENSOTSG00005011640)
Coho salmon	MODERN SPECIES	2	USF3 (ENSOKIG00005009877)	boc (ENSOKIG00005009821)	SHISA2 (ENSOKIG00005009806)	ENSOKIG00005009778	ATP8A2 (ENSOKIG00005009001)	rnf6 (ENSOKIG00005008927)	cdk8 (ENSOKIG00005008750)	wasf3b (ENSOKIG00005008718) #7	GPR12 (ENSOKIG00005008710) #9	usp12a (ENSOKIG00005008577) #10	rpl21 (ENSOKIG00005008531) ##11	gtf3ab (ENSOKIG00005008478) #13	lnx2a (ENSOKIG00005008419) #15	pdx1 (ENSOKIG00005008402)	FLT3 (ENSOKIG00005008384) #21	PAN3 (ENSOKIG00005007837) #22	FLT1 (ENSOKIG00005007728) #23	ENSOKIG00005007717	SPATA13 (ENSOKIG00005007613)	c1qtnf9 (ENSOKIG00005007570)	ENSOKIG00005007540	tagln3b (ENSOKIG00005007532)	ythdf3 (ENSOKIG00005007522)	ENSOKIG00005007499	ENSOKIG00005007487	bhlhe22 (ENSOKIG00005007480)	armc1 (ENSOKIG00005007459)	mtfr1 (ENSOKIG00005007440)	pde7a (ENSOKIG00005007319)	DNAJC5B (ENSOKIG00005007289)	trim55b (ENSOKIG00005007278)
Huchen	MODERN SPECIES	2216			ATP8A2 (ENSHHUG00000034723)	rnf6 (ENSHHUG00000034718)	cdk8 (ENSHHUG00000034673)	wasf3b (ENSHHUG00000034667) #7	GPR12 (ENSHHUG00000034663) #9	usp12a (ENSHHUG00000034545) #10	rpl21 (ENSHHUG00000034507) ##11	gtf3ab (ENSHHUG00000034502) #13	ENSHHUG00000034499 #15	lnx2a (ENSHHUG00000034490) #15	ENSHHUG00000034477	pdx1 (ENSHHUG00000034473)	ENSHHUG00000034453	pan3 (ENSHHUG00000034321) #22	ENSHHUG00000034311
Northern pike	MODERN SPECIES	20	ATP8A2 (ENSELUG00000013910)	rnf6 (ENSELUG00000013920)	cdk8 (ENSELUG00000013968)	wasf3b (ENSELUG00000014003) #7	GPR12 (ENSELUG00000014012) #9	usp12a (ENSELUG00000014044) #10	rpl21 (ENSELUG00000014073) ##11	gtf3ab (ENSELUG00000014083) #13	lnx2a (ENSELUG00000014124) #15	si:ch211-140b10.6 (ENSELUG00000033004)	pdx1 (ENSELUG00000030047)	ENSELUG00000014152	urad (ENSELUG00000014158) #20	ENSELUG00000014227	ENSELUG00000029905	pan3 (ENSELUG00000014375) #22	flt1 (ENSELUG00000000532) #23	ENSELUG00000014546	TMPRSS7 (ENSELUG00000014627)	ENSELUG00000014704	c1qtnf9 (ENSELUG00000014736)	ENSELUG00000014725	TAGLN3 (ENSELUG00000014748)	tagln3b (ENSELUG00000025770)	ythdf3 (ENSELUG00000014824)	ENSELUG00000034420	bhlhe22 (ENSELUG00000014866)	armc1 (ENSELUG00000014905)	mtfr1 (ENSELUG00000014928)	pde7a (ENSELUG00000014968)	DNAJC5B (ENSELUG00000014981)
Otomorpha	ANCESTRAL SPECIES	3	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385.a.a	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT01060000251044	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Otophysi	ANCESTRAL SPECIES	42	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104.d	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385.a.a	ENSGT00390000017765.b	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b.w	ENSGT00530000063666.b.eb	ENSGT00390000012054.a
Characiphysae	ANCESTRAL SPECIES	17	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104.d	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000176911	ENSGT00940000154936	ENSGT00940000159385.a.a	ENSGT00390000017765.b	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b.w	ENSGT00530000063666.b.eb	ENSGT00390000012054.a	ENSGT00940000166463	ENSGT00390000001844.a.a	ENSGT00940000159227
Channel catfish	MODERN SPECIES	15	usp12 (ENSIPUG00000010631) #10	gpr12 (ENSIPUG00000010616) #9	WASF3 (ENSIPUG00000010595) #7	cdk8 (ENSIPUG00000010456)	rnf6 (ENSIPUG00000010428)	ATP8A2 (ENSIPUG00000010193)	shisa2 (ENSIPUG00000010144)	spice1 (ENSIPUG00000010107)	ENSIPUG00000010095	ENSIPUG00000010025	boc (ENSIPUG00000009964)	USF3 (ENSIPUG00000009949)	naa50 (ENSIPUG00000009912)	atp6v1a (ENSIPUG00000009868)	flt3 (ENSIPUG00000009837)	pan3 (ENSIPUG00000009790) #22	flt1 (ENSIPUG00000009753) #23	ENSIPUG00000009732	ENSIPUG00000009719	ENSIPUG00000009682	ENSIPUG00000009672	c1qtnf9 (ENSIPUG00000009658)	tagln3 (ENSIPUG00000009643)	tagln3b (ENSIPUG00000009621)	acot9.2 (ENSIPUG00000009562)	ENSIPUG00000009513	ENSIPUG00000009481	ENSIPUG00000009444	slc4a2b (ENSIPUG00000009364)	si:ch1073-406l10.2 (ENSIPUG00000009343)	zgc:195173 (ENSIPUG00000009332)
Characiphysae_b	ANCESTRAL SPECIES	52	ENSGT01000000218454	ENSGT00390000006207	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104.d	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00970000197361	ENSGT00940000154936	ENSGT00940000159385.a.a	ENSGT00390000017765.b	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b.w	ENSGT00530000063666.b.eb	ENSGT00390000012054.a	ENSGT00940000166463	ENSGT00390000001844.a.a	ENSGT00940000159227
Electric eel	MODERN SPECIES	78																pan3 (ENSEEEG00000013875) #22	flt1 (ENSEEEG00000013838) #23	ENSEEEG00000013836	ENSEEEG00000013787	ENSEEEG00000013786	c1qtnf9 (ENSEEEG00000013782)	ENSEEEG00000013780	tagln3b (ENSEEEG00000013779)	acot9.2 (ENSEEEG00000013706)	sat1b (ENSEEEG00000013700)	apoob (ENSEEEG00000013698)	ENSEEEG00000013696	chodl (ENSEEEG00000013695)	ENSEEEG00000013694	zgc:112408 (ENSEEEG00000013673)	ENSEEEG00000013663
Characoidei	ANCESTRAL SPECIES	14	ENSGT00940000161555	ENSGT00390000006207	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104.d	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00970000197361	ENSGT00940000154936	ENSGT00940000159385.a.a	ENSGT00390000017765.b	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b.w	ENSGT00530000063666.b.eb	ENSGT00390000012054.a	ENSGT00940000166463	ENSGT00390000001844.a.a	ENSGT00940000159227
Red-bellied piranha	MODERN SPECIES	455			man1a2 (ENSPNAG00000024992)	rnf6 (ENSPNAG00000025007)	cdk8 (ENSPNAG00000025089)	wasf3b (ENSPNAG00000025096) #7	GPR12 (ENSPNAG00000025116) #9	usp12a (ENSPNAG00000006254) #10	rpl21 (ENSPNAG00000025184) ##11	gtf3ab (ENSPNAG00000025199) #13	lnx2a (ENSPNAG00000025260) #15	si:ch211-140b10.6 (ENSPNAG00000025278)	pdx1 (ENSPNAG00000005255)	urad (ENSPNAG00000025313) #20	ENSPNAG00000025336	pan3 (ENSPNAG00000025422) #22	flt1 (ENSPNAG00000025453) #23	ENSPNAG00000025490	ENSPNAG00000025514	ENSPNAG00000025561	ENSPNAG00000003934	c1qtnf9 (ENSPNAG00000025597)	ENSPNAG00000025618	tagln3b (ENSPNAG00000005152)	acot9.2 (ENSPNAG00000005257)	sat1b (ENSPNAG00000025741)
Mexicana tetra	MODERN SPECIES	18	spice1 (ENSAMXG00000014666)	SHISA2 (ENSAMXG00000032367)	ATP8A2 (ENSAMXG00000014593)	rnf6 (ENSAMXG00000042264)	CDK8 (ENSAMXG00000014535)	wasf3b (ENSAMXG00000014501) #7	GPR12 (ENSAMXG00000025607) #9	usp12a (ENSAMXG00000014486) #10	rpl21 (ENSAMXG00000041892) ##11	gtf3ab (ENSAMXG00000014453) #13	lnx2a (ENSAMXG00000014426) #15	si:ch211-140b10.6 (ENSAMXG00000031681)	pdx1 (ENSAMXG00000031179)	urad (ENSAMXG00000014396) #20	ENSAMXG00000014377	pan3 (ENSAMXG00000014360) #22	flt1 (ENSAMXG00000014301) #23	ENSAMXG00000030254	ENSAMXG00000043708	ENSAMXG00000014196	ENSAMXG00000032802	c1qtnf9 (ENSAMXG00000042750)	TAGLN3 (ENSAMXG00000014160)	tagln3b (ENSAMXG00000030363)	ENSAMXG00000034366	ENSAMXG00000035523	acot9.2 (ENSAMXG00000014122)	sat1b (ENSAMXG00000029966)	apoob (ENSAMXG00000014089)	si:rp71-1f1.4 (ENSAMXG00000032627)	ENSAMXG00000014069
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	20	ENSGT00390000006207	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104.c.a	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000155647.cb #13	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504.g #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00970000197361	ENSGT00940000154936	ENSGT00940000159385.a.a	ENSGT00390000017765.b	ENSGT00390000005330.f	ENSGT00390000005330.e	ENSGT00950000183121.b.b.b.b.w	ENSGT00530000063666.b.eb	ENSGT00390000012054.a	ENSGT00390000012731.a.a	ENSGT00500000044852.a.a.a
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	414	ENSGT00390000006207.b	ENSGT00940000157443.l.b	ENSGT00940000157332.i	ENSGT00940000158530.t	ENSGT00940000157104.c.a	ENSGT00950000182962.a.a.d.d #7	ENSGT01060000248564.b.a.b.a.d #9	ENSGT00940000153284.a.mc.b.c #10	ENSGT00950000182922.b.l ##11	ENSGT00940000155647.cb.a #13	ENSGT00940000158381.c #15	ENSGT00390000003643.o	ENSGT00940000163955.l	ENSGT00390000002395.c #20	ENSGT00940000167274.f	ENSGT00390000001504.g.a.a #22	ENSGT00940000158713.b #23	ENSGT00940000165120.d	ENSGT00940000160085	ENSGT00940000154103.a.f	ENSGT00970000197361	ENSGT00940000154103.a.e	ENSGT00940000154936	ENSGT00940000159385.a.a.b	ENSGT00390000017765.b.a.b	ENSGT00390000005330.e.a	ENSGT00950000183121.b.b.b.b.w.c	ENSGT00530000063666.b.eb.a
Goldfish	MODERN SPECIES	16	PAN3 (ENSCARG00000011834) #22	SHISA2 (ENSCARG00000011897)	ENSCARG00000011953	rnf6 (ENSCARG00000012700)	cdk8 (ENSCARG00000012746)	wasf3b (ENSCARG00000013714) #7	GPR12 (ENSCARG00000013722) #9	usp12a (ENSCARG00000013734) #10	rpl21 (ENSCARG00000013765) ##11	gtf3ab (ENSCARG00000013776) #13	lnx2a (ENSCARG00000013796) #15	si:ch211-140b10.6 (ENSCARG00000013805)	pdx1 (ENSCARG00000013807)	urad (ENSCARG00000013810) #20	ENSCARG00000013815	pan3 (ENSCARG00000013889) #22	flt1 (ENSCARG00000015256) #23	ENSCARG00000015493	TMPRSS7 (ENSCARG00000015505)	ENSCARG00000015523	c1qtnf9 (ENSCARG00000015611)	ENSCARG00000015615	TAGLN3 (ENSCARG00000015616)	tagln3b (ENSCARG00000015621)	acot9.1 (ENSCARG00000015661)	sat1b (ENSCARG00000016102)	apoob (ENSCARG00000016145)	ENSCARG00000016173	ENSCARG00000016176	ENSCARG00000016199	zc2hc1a (ENSCARG00000016318)
Cyprininae_a	ANCESTRAL SPECIES	19	ENSGT00390000015759.d	ENSGT00940000158810.a	ENSGT00390000006207.b	ENSGT00940000157443.l.b	ENSGT00940000157332.i	ENSGT00940000158530.t	ENSGT00940000157104.c.a	ENSGT00950000182962.a.a.d.d #7	ENSGT01060000248564.b.a.b.a.d #9	ENSGT00940000153284.a.mc.b.c #10	ENSGT00950000182922.b.l ##11	ENSGT00940000155647.cb.a #13	ENSGT00940000158381.c #15	ENSGT00390000003643.o	ENSGT00940000167274.f	ENSGT00390000001504.g.a.a #22	ENSGT00940000158713.b #23	ENSGT00940000165120.d	ENSGT00940000160085	ENSGT00940000154103.a.f	ENSGT00970000197361	ENSGT00940000154103.a.e	ENSGT00940000154936	ENSGT00940000159385.a.a.b	ENSGT00390000017765.a.a	ENSGT00940000154361.A.c #17	ENSGT00940000155647.bb.e #13	ENSGT00940000163061.c	ENSGT00390000001520.b	ENSGT00940000158465.k	ENSGT00940000159306.b.a.b.a.a
Common carp reference	MODERN SPECIES	40	USF3 (ENSCCRG00000082373)	boc (ENSCCRG00000010138)	spice1 (ENSCCRG00000027631)	ENSCCRG00000057454	ENSCCRG00000050173	rnf6 (ENSCCRG00000068404)	cdk8 (ENSCCRG00000052073)	wasf3b (ENSCCRG00000005701) #7	GPR12 (ENSCCRG00000068519) #9	rpl21 (ENSCCRG00000068151) ##11	usp12a (ENSCCRG00000022679) #10	gtf3ab (ENSCCRG00000005024) #13	pdx1 (ENSCCRG00000068168)	ENSCCRG00000005031 #15	ENSCCRG00000080210	pan3 (ENSCCRG00000041721) #22	flt1 (ENSCCRG00000045302) #23	ENSCCRG00000076389	ENSCCRG00000020183	ENSCCRG00000020192	ENSCCRG00000072456	c1qtnf9 (ENSCCRG00000067067)	ENSCCRG00000020201	acot9.2 (ENSCCRG00000020210)	acot9.1 (ENSCCRG00000020323)	sat1b (ENSCCRG00000069688)	apoob (ENSCCRG00000021083)	ENSCCRG00000021106	ropn1l (ENSCCRG00000007568)	ENSCCRG00000001477	ENSCCRG00000064652
Cyprininae	ANCESTRAL SPECIES	45	ENSGT00940000157443.l.a	ENSGT00940000157332.j	ENSGT00940000158530.s	ENSGT00940000157104.c.b	ENSGT00950000182962.a.a.d.c #7	ENSGT01060000248564.b.a.b.a.c #9	ENSGT00940000153284.a.mc.b.d #10	ENSGT00950000182922.b.k ##11	ENSGT00940000155647.cb.b #13	ENSGT00940000158381.d #15	ENSGT00390000003643.p	ENSGT00940000163955.k	ENSGT00390000002395.d #20	ENSGT00940000167274.e	ENSGT00390000001504.g.b #22	ENSGT00390000001504.g.a.b #22	ENSGT00940000158713.a #23	ENSGT00940000165120.c	ENSGT00940000159385.a.a.a	ENSGT00390000017765.b.a.a	ENSGT00390000005330.e.b	ENSGT00950000183121.b.b.b.b.w.d	ENSGT00530000063666.b.eb.b	ENSGT00390000012054.a	ENSGT00390000012731.a.a	ENSGT00500000044852.a.a.a.c	ENSGT00940000154574.c	ENSGT00940000154952.a.b.rb.a	ENSGT00940000159419.d	ENSGT00500000044852.a.a.a.d	ENSGT01090000260283
Cyprininae_a	ANCESTRAL SPECIES	57	ENSGT00940000157443.l.a	ENSGT00940000157332.j	ENSGT00940000158530.s	ENSGT00940000157104.c.b	ENSGT00950000182962.a.a.d.c #7	ENSGT01060000248564.b.a.b.a.c #9	ENSGT00940000153284.a.mc.b.d #10	ENSGT00950000182922.b.k ##11	ENSGT00940000155647.cb.b #13	ENSGT00940000158381.d #15	ENSGT00390000003643.p	ENSGT00940000163955.k	ENSGT00390000002395.d #20	ENSGT00940000167274.e	ENSGT00390000001504.g.b #22	ENSGT00390000001504.g.a.b #22	ENSGT00940000158713.a #23	ENSGT00940000165120.c	ENSGT00940000159385.a.a.a	ENSGT00390000017765.b.a.a	ENSGT00390000005330.f	ENSGT00390000017765.b.b	ENSGT00390000005330.e.b	ENSGT00950000183121.b.b.b.b.w.d	ENSGT00530000063666.b.eb.b	ENSGT01030000236679	ENSGT00390000012731.a.a.d	ENSGT00500000044852.a.a.a.c
Common carp reference	MODERN SPECIES	14	USF3 (ENSCCRG00000010143)	boc (ENSCCRG00000020879)	spice1 (ENSCCRG00000033480)	ENSCCRG00000053641	ENSCCRG00000042137	cdk8 (ENSCCRG00000005325)	GPR12 (ENSCCRG00000064349) #9	wasf3b (ENSCCRG00000073791) #7	usp12a (ENSCCRG00000007576) #10	ENSCCRG00000066603	rpl21 (ENSCCRG00000007511) ##11	lnx2a (ENSCCRG00000007712) #15	pdx1 (ENSCCRG00000027679)	urad (ENSCCRG00000080030) #20	ENSCCRG00000077937	pan3 (ENSCCRG00000027699) #22	flt1 (ENSCCRG00000027874) #23	ENSCCRG00000067037	ENSCCRG00000015594	ENSCCRG00000015584	tagln3b (ENSCCRG00000073126)	acot9.1 (ENSCCRG00000017567)	sat1b (ENSCCRG00000020336)	ropn1l (ENSCCRG00000017552)	si:rp71-1f1.4 (ENSCCRG00000060532)	ENSCCRG00000071460	dap (ENSCCRG00000075983)	ENSCCRG00000058258	ENSCCRG00000067662	ENSCCRG00000037680	zc2hc1a (ENSCCRG00000077102)
Goldfish	MODERN SPECIES	43	USF3 (ENSCARG00000034510)	boc (ENSCARG00000034335)	spice1 (ENSCARG00000034277)	SHISA2 (ENSCARG00000034263)	ATP8A2 (ENSCARG00000024914)	rnf6 (ENSCARG00000024595)	cdk8 (ENSCARG00000024403)	wasf3b (ENSCARG00000024364) #7	GPR12 (ENSCARG00000024361) #9	usp12a (ENSCARG00000023800) #10	rpl21 (ENSCARG00000023757) ##11	gtf3ab (ENSCARG00000023748) #13	lnx2a (ENSCARG00000023730) #15	pdx1 (ENSCARG00000023723)	urad (ENSCARG00000023713) #20	pan3 (ENSCARG00000023454) #22	flt1 (ENSCARG00000023355) #23	ENSCARG00000023305	ENSCARG00000023288	ENSCARG00000023246	tagln3b (ENSCARG00000023232)	acot9.1 (ENSCARG00000021207)	si:rp71-1f1.4 (ENSCARG00000021171)	ropn1l (ENSCARG00000021124)	ENSCARG00000021108	ENSCARG00000021101	ENSCARG00000021067	ENSCARG00000021059	ENSCARG00000020124	zc2hc1a (ENSCARG00000020064)	ENSCARG00000020054
Cyprininae	ANCESTRAL SPECIES	45	ENSGT00390000006207.a	ENSGT00940000157443.l.a	ENSGT00940000157332.j	ENSGT00940000158530.s	ENSGT00940000157104.c.b	ENSGT00950000182962.a.a.d.c #7	ENSGT01060000248564.b.a.b.a.c #9	ENSGT00940000153284.a.mc.b.d #10	ENSGT00950000182922.b.k ##11	ENSGT00940000155647.cb.b #13	ENSGT00940000158381.d #15	ENSGT00390000003643.p	ENSGT00940000163955.k	ENSGT00390000002395.d #20	ENSGT00940000167274.e	ENSGT00390000001504.g.b #22	ENSGT00390000001504.g.a.b #22	ENSGT00940000158713.a #23	ENSGT00940000165120.c	ENSGT00940000159385.a.a.a	ENSGT00390000017765.b.a.a	ENSGT00390000005330.e.b	ENSGT00950000183121.b.b.b.b.w.d	ENSGT00530000063666.b.eb.b	ENSGT00390000012054.a	ENSGT00390000012731.a.a	ENSGT00500000044852.a.a.a.c	ENSGT00940000154574.c	ENSGT00940000154952.a.b.rb.a	ENSGT00940000159419.d	ENSGT00500000044852.a.a.a.d
Cyprininae_a	ANCESTRAL SPECIES	57	ENSGT00390000006207.a	ENSGT00940000157443.l.a	ENSGT00940000157332.j	ENSGT00940000158530.s	ENSGT00940000157104.c.b	ENSGT00950000182962.a.a.d.c #7	ENSGT01060000248564.b.a.b.a.c #9	ENSGT00940000153284.a.mc.b.d #10	ENSGT00950000182922.b.k ##11	ENSGT00940000155647.cb.b #13	ENSGT00940000158381.d #15	ENSGT00390000003643.p	ENSGT00940000163955.k	ENSGT00390000002395.d #20	ENSGT00940000167274.e	ENSGT00390000001504.g.b #22	ENSGT00390000001504.g.a.b #22	ENSGT00940000158713.a #23	ENSGT00940000165120.c	ENSGT00940000159385.a.a.a	ENSGT00390000017765.b.a.a	ENSGT00390000005330.f	ENSGT00390000017765.b.b	ENSGT00390000005330.e.b	ENSGT00950000183121.b.b.b.b.w.d	ENSGT00530000063666.b.eb.b	ENSGT01030000236679	ENSGT00390000012731.a.a.d	ENSGT00500000044852.a.a.a.c
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	138	boc (ENSSGRG00000025910)	spice1 (ENSSGRG00000025904)	SHISA2 (ENSSGRG00000025901)	ENSSGRG00000025638	rnf6 (ENSSGRG00000025620)	cdk8 (ENSSGRG00000025128)	wasf3b (ENSSGRG00000025123) #7	GPR12 (ENSSGRG00000025122) #9	usp12a (ENSSGRG00000025100) #10	rpl21 (ENSSGRG00000025099) ##11	gtf3ab (ENSSGRG00000025066) #13	ENSSGRG00000025064	lnx2a (ENSSGRG00000025063) #15	si:ch211-140b10.6 (ENSSGRG00000025062)	pdx1 (ENSSGRG00000025061)	pan3 (ENSSGRG00000024997) #22	flt1 (ENSSGRG00000024840) #23	ENSSGRG00000024834	TMPRSS7 (ENSSGRG00000024833)	ENSSGRG00000024787	tagln3b (ENSSGRG00000024784)	acot9.1 (ENSSGRG00000024644)	sat1b (ENSSGRG00000024639)	apoob (ENSSGRG00000024638)	ropn1l (ENSSGRG00000024636)	ENSSGRG00000024635	ENSSGRG00000024634	ENSSGRG00000024633	dap (ENSSGRG00000024632)	ENSSGRG00000023547
Golden-line barbel	MODERN SPECIES	64	SHISA2 (ENSSGRG00000046092)	ATP8A2 (ENSSGRG00000046098)	rnf6 (ENSSGRG00000046410)	cdk8 (ENSSGRG00000046414)	wasf3b (ENSSGRG00000046415) #7	GPR12 (ENSSGRG00000046416) #9	usp12a (ENSSGRG00000046425) #10	rpl21 (ENSSGRG00000046503) ##11	gtf3ab (ENSSGRG00000046517) #13	lnx2a (ENSSGRG00000046521) #15	si:ch211-140b10.6 (ENSSGRG00000046522)	pdx1 (ENSSGRG00000046523)	urad (ENSSGRG00000046524) #20	flt1 (ENSSGRG00000046525) #23	ENSSGRG00000046530	pan3 (ENSSGRG00000046534) #22	ENSSGRG00000046657	ENSSGRG00000046659	ENSSGRG00000046660	c1qtnf9 (ENSSGRG00000046661)	TAGLN3 (ENSSGRG00000046662)	tagln3b (ENSSGRG00000046664)	acot9.1 (ENSSGRG00000046678)	sat1b (ENSSGRG00000046891)	apoob (ENSSGRG00000046892)	ENSSGRG00000046893	ropn1l (ENSSGRG00000046894)	ENSSGRG00000046895	dap (ENSSGRG00000046897)	ENSSGRG00000046898
Zebrafish	MODERN SPECIES	16	SHISA2 (ENSDARG00000088232)	ATP8A2 (ENSDARG00000077492)	rnf6 (ENSDARG00000077955)	cdk8 (ENSDARG00000016496)	wasf3b (ENSDARG00000062948) #7	GPR12 (ENSDARG00000062934) #9	usp12a (ENSDARG00000078109) #10	ENSDARG00000113148	rpl21 (ENSDARG00000010516) ##11	gtf3ab (ENSDARG00000071583) #13	lnx2a (ENSDARG00000029177) #15	si:ch211-140b10.6 (ENSDARG00000045342)	pdx1 (ENSDARG00000002779)	urad (ENSDARG00000071579) #20	ENSDARG00000058503	pan3 (ENSDARG00000031637) #22	flt1 (ENSDARG00000019371) #23	ENSDARG00000062758	ENSDARG00000116575	ENSDARG00000062837	c1qtnf9 (ENSDARG00000058318)	tagln3b (ENSDARG00000058394)	acot9.2 (ENSDARG00000058390)	acot9.1 (ENSDARG00000058352)	sat1b (ENSDARG00000032272)	apoob (ENSDARG00000026444)	si:rp71-1f1.4 (ENSDARG00000092476)	ENSDARG00000114335	ENSDARG00000110278	ropn1l (ENSDARG00000058370)	ANKRD33B (ENSDARG00000058357)
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00390000001504.h #22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000001504.h #22
Goldfish	MODERN SPECIES	16	pan3 (ENSCARG00000013889) #22	ENSCARG00000013815	urad (ENSCARG00000013810) #20	pdx1 (ENSCARG00000013807)	si:ch211-140b10.6 (ENSCARG00000013805)	lnx2a (ENSCARG00000013796) #15	gtf3ab (ENSCARG00000013776) #13	rpl21 (ENSCARG00000013765) ##11	usp12a (ENSCARG00000013734) #10	GPR12 (ENSCARG00000013722) #9	wasf3b (ENSCARG00000013714) #7	cdk8 (ENSCARG00000012746)	rnf6 (ENSCARG00000012700)	ENSCARG00000011953	SHISA2 (ENSCARG00000011897)	PAN3 (ENSCARG00000011834) #22	flt1 (ENSCARG00000011773) #23	TMPRSS7 (ENSCARG00000011738)	ENSCARG00000011569	boc (ENSCARG00000011533)	USF3 (ENSCARG00000011468)	naa50 (ENSCARG00000011428)	ENSCARG00000011423	ENSCARG00000011411	ATP6V1A (ENSCARG00000011291)	GRAMD1C (ENSCARG00000011267)	zdhhc23b (ENSCARG00000011259)	ccdc191 (ENSCARG00000011240)	qtrt2 (ENSCARG00000011214)	drd3 (ENSCARG00000011203)	ENSCARG00000011178
Clupeiformes	ANCESTRAL SPECIES	47	ENSGT00940000159124	ENSGT00940000156130.a.a	ENSGT00940000157443	ENSGT00940000157332	ENSGT00940000158530	ENSGT00940000157104	ENSGT00950000182962.a.a.d #7	ENSGT01060000248564.b.a.b.a #9	ENSGT00940000153284.a.mc.b #10	ENSGT00950000182922.b ##11	ENSGT00940000158381 #15	ENSGT00390000003643	ENSGT00940000163955	ENSGT00390000002395 #20	ENSGT00940000167274	ENSGT00390000001504 #22	ENSGT00940000158713 #23	ENSGT00940000165120	ENSGT00940000160085	ENSGT00940000154103.a	ENSGT00940000154936	ENSGT00940000159385.b	ENSGT00390000017765.b	ENSGT00940000158777	ENSGT01060000251044	ENSGT00940000162962	ENSGT00390000014100.k.b	ENSGT00950000183215.c.a.b
Denticle herring	MODERN SPECIES	11	gdap1 (ENSDCDG00000020483)	JPH1 (ENSDCDG00000020488)	SHISA2 (ENSDCDG00000020489)	ATP8A2 (ENSDCDG00000020556)	rnf6 (ENSDCDG00000023865)	cdk8 (ENSDCDG00000023870)	wasf3b (ENSDCDG00000023955) #7	GPR12 (ENSDCDG00000023959) #9	usp12a (ENSDCDG00000023962) #10	rpl21 (ENSDCDG00000024059) ##11	lnx2a (ENSDCDG00000024065) #15	si:ch211-140b10.6 (ENSDCDG00000024069)	pdx1 (ENSDCDG00000024070)	urad (ENSDCDG00000024072) #20	ENSDCDG00000024074	pan3 (ENSDCDG00000024102) #22	flt1 (ENSDCDG00000025035) #23	ENSDCDG00000025040	ENSDCDG00000025041	TMPRSS7 (ENSDCDG00000025043)	ENSDCDG00000025049	c1qtnf9 (ENSDCDG00000025056)	TAGLN3 (ENSDCDG00000025062)	tagln3b (ENSDCDG00000025064)	ythdf3 (ENSDCDG00000025067)	bhlhe22 (ENSDCDG00000025071)	armc1 (ENSDCDG00000025074)	mtfr1 (ENSDCDG00000025077)	pde7a (ENSDCDG00000025086)	DNAJC5B (ENSDCDG00000025096)	crhb (ENSDCDG00000025097)
Atlantic herring	MODERN SPECIES	8	RTTN (ENSCHAG00000013356)	ENSCHAG00000013630	dok6 (ENSCHAG00000013662)	CRISPLD1 (ENSCHAG00000013700)	pi15a (ENSCHAG00000013919)	gdap1 (ENSCHAG00000013933)	JPH1 (ENSCHAG00000013949)	SHISA2 (ENSCHAG00000013955)	ENSCHAG00000013991	rnf6 (ENSCHAG00000015549)	cdk8 (ENSCHAG00000015572)	wasf3b (ENSCHAG00000015892) #7	pdx1 (ENSCHAG00000015905)	si:ch211-140b10.6 (ENSCHAG00000015909)	lnx2a (ENSCHAG00000015948) #15	pan3 (ENSCHAG00000015966) #22	flt1 (ENSCHAG00000016175) #23	ENSCHAG00000016931	ENSCHAG00000016990	ENSCHAG00000017010	ENSCHAG00000017035	c1qtnf9 (ENSCHAG00000017323)	ENSCHAG00000017366	tagln3a (ENSCHAG00000017372)	tagln3b (ENSCHAG00000017391)	ythdf3 (ENSCHAG00000017393)	ENSCHAG00000017403	bhlhe22 (ENSCHAG00000017425)	armc1 (ENSCHAG00000017432)	mtfr1 (ENSCHAG00000017442)	pde7a (ENSCHAG00000017472)
Spotted gar	MODERN SPECIES	669	cdk8 (ENSLOCG00000004124)	wasf3b (ENSLOCG00000004135) #7	GPR12 (ENSLOCG00000018189) #9	usp12a (ENSLOCG00000004146) #10	rpl21 (ENSLOCG00000004171) ##11	RASL11A (ENSLOCG00000004176) #12	MTIF3 (ENSLOCG00000004205) #14	gtf3ab (ENSLOCG00000004190) #13	lnx2a (ENSLOCG00000004220) #15	si:ch211-140b10.6 (ENSLOCG00000004237)	gsx1 (ENSLOCG00000004253) #17	pdx1 (ENSLOCG00000004260)	CDX2 (ENSLOCG00000004278) #19	urad (ENSLOCG00000004296) #20	FLT3 (ENSLOCG00000004310) #21	pan3 (ENSLOCG00000004336) #22	flt1 (ENSLOCG00000004379) #23	ENSLOCG00000004407	TMPRSS7 (ENSLOCG00000004426)	tagln3a (ENSLOCG00000004445)	tagln3b (ENSLOCG00000004461)	SPATA13 (ENSLOCG00000004477)	c1qtnf9 (ENSLOCG00000004497)	cxadr (ENSLOCG00000004512)	btg3 (ENSLOCG00000004531)	zgc:110006 (ENSLOCG00000004543)	ripk4 (ENSLOCG00000004558)	zgc:112083 (ENSLOCG00000004586)	PRDM15 (ENSLOCG00000004600)	C2CD2 (ENSLOCG00000004620)	atg101 (ENSLOCG00000018192)
Reedfish	MODERN SPECIES	12	cdk8 (ENSECRG00000008109)	wasf3b (ENSECRG00000008096) #7	GPR12 (ENSECRG00000008087) #9	usp12a (ENSECRG00000008004) #10	rpl21 (ENSECRG00000007956) ##11	RASL11A (ENSECRG00000007941) #12	gtf3ab (ENSECRG00000007924) #13	MTIF3 (ENSECRG00000007889) #14	lnx2a (ENSECRG00000007858) #15	si:ch211-140b10.6 (ENSECRG00000007844)	ENSECRG00000007834	pdx1 (ENSECRG00000007815)	CDX2 (ENSECRG00000007793) #19	urad (ENSECRG00000007776) #20	FLT3 (ENSECRG00000007743) #21	pan3 (ENSECRG00000007684) #22	flt1 (ENSECRG00000007592) #23	ENSECRG00000007553	ENSECRG00000007531	ENSECRG00000007521	TMPRSS7 (ENSECRG00000007492)	TAGLN3 (ENSECRG00000007472)	ENSECRG00000007451	tagln3b (ENSECRG00000007431)	PHLDB2 (ENSECRG00000007400)	ENSECRG00000007373	PLCXD2 (ENSECRG00000007358)	ENSECRG00000007340	CIP2A (ENSECRG00000007313)	ENSECRG00000007247	gabrr3a (ENSECRG00000007203)
Elephant shark	MODERN SPECIES	1566	WASF3 (ENSCMIG00000009211) #7	GPR12 (ENSCMIG00000009208) #9	ENSCMIG00000009207	USP12 (ENSCMIG00000009192) #10	rpl21 (ENSCMIG00000009173) ##11	RASL11A (ENSCMIG00000009168) #12	gtf3aa (ENSCMIG00000009165) #13	mtif3 (ENSCMIG00000009161) #14	lnx2a (ENSCMIG00000009157) #15	ENSCMIG00000009152	ENSCMIG00000009150	pdx1 (ENSCMIG00000009148)	cdx4 (ENSCMIG00000009145)	urad (ENSCMIG00000009143) #20	FLT3 (ENSCMIG00000009136) #21	pan3 (ENSCMIG00000009059) #22	ENSCMIG00000009040	ENSCMIG00000009003	pomp (ENSCMIG00000008991) #24	SLC46A3 (ENSCMIG00000008988) #25	ENSCMIG00000008985 #27	SLC7A1 (ENSCMIG00000008972) #28	ubl3 (ENSCMIG00000008966) #29	ENSCMIG00000008964	ENSCMIG00000008963	ENSCMIG00000008961	katnal1 (ENSCMIG00000008951) #30	ENSCMIG00000008937	ENSCMIG00000008932 #32
Cyclostomata	ANCESTRAL SPECIES	153																ENSGT00390000001504 #22	ENSGT00940000156710	ENSGT00940000159358
Lamprey	MODERN SPECIES	1377															ENSPMAG00000002396	pan3 (ENSPMAG00000002383) #22
Hagfish	MODERN SPECIES	1023	ENSEBUG00000007022	ENSEBUG00000012444	ENSEBUG00000009450	ENSEBUG00000014734	ENSEBUG00000001242	rps16 (ENSEBUG00000006941)	ENSEBUG00000011270	ENSEBUG00000013720	ENSEBUG00000011644	ENSEBUG00000003368	ENSEBUG00000007835	ENSEBUG00000007706	lnx2a (ENSEBUG00000001535) #15	ENSEBUG00000015805	ENSEBUG00000007360	pan3 (ENSEBUG00000012218) #22	ENSEBUG00000005461	ENSEBUG00000002161	ENSEBUG00000003046	ENSEBUG00000008965	ENSEBUG00000013489	ENSEBUG00000004114	SH3RF1 (ENSEBUG00000015770)	coq2 (ENSEBUG00000000814)	ENSEBUG00000000432	ENSEBUG00000001082