Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00910000147422	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.a ##30	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34
Glires	ANCESTRAL SPECIES	2	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00910000147422	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.a ##30	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00910000147422	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.a ##30	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00950000182899.C.a
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.a ##30	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000164015	ENSGT00950000182899.C.a
Myomorpha	ANCESTRAL SPECIES	38	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.a ##30	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.b.b #35
Muroidea	ANCESTRAL SPECIES	83									ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.b.b #35
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00730000111293	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.b.b #35	ENSGT00940000153661.a.a ##35	ENSGT00940000157312 #36
Murinae	ANCESTRAL SPECIES	5	ENSGT00730000111293	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.a.a ##35	ENSGT00940000157312 #36	ENSGT00950000183169.C #37
Mus	ANCESTRAL SPECIES	7	ENSGT00940000160075 #7	ENSGT00390000002757 #8	ENSGT00390000015520 #9	ENSGT00940000154964 #10	ENSGT00940000153497.E #11	ENSGT00940000158435 #12	ENSGT00890000139496 #13	ENSGT00940000155893.b #14	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.a.a ##35	ENSGT00940000157312 #36	ENSGT00950000183169.C #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000160075 #7	ENSGT00390000002757 #8	ENSGT00390000015520 #9	ENSGT00940000154964 #10	ENSGT00940000153497.E #11	ENSGT00940000158435 #12	ENSGT00890000139496 #13	ENSGT00940000155893.b #14	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.b.b #35	ENSGT00940000153661.a.a ##35	ENSGT00940000157312 #36
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0024905 #7	Sec62 (MGP_CAROLIEiJ_G0024906) #8	Gpr160 (MGP_CAROLIEiJ_G0024907) #9	Phc3 (MGP_CAROLIEiJ_G0024908) #10	Prkci (MGP_CAROLIEiJ_G0024909) #11	Skil (MGP_CAROLIEiJ_G0024910) #12	Cldn11 (MGP_CAROLIEiJ_G0024911) #13	Slc7a14 (MGP_CAROLIEiJ_G0024912) #14	Kcnmb2 (MGP_CAROLIEiJ_G0024913) #15	Zmat3 (MGP_CAROLIEiJ_G0024914) #16	Pik3ca (MGP_CAROLIEiJ_G0024915) #17	Kcnmb3 (MGP_CAROLIEiJ_G0024916) #18	Zfp639 (MGP_CAROLIEiJ_G0024917) #19	MGP_CAROLIEiJ_G0024918 #20	Gnb4 (MGP_CAROLIEiJ_G0024919) #21	Actl6a (MGP_CAROLIEiJ_G0024920) #22	Mrpl47 (MGP_CAROLIEiJ_G0024921) #23	Ndufb5 (MGP_CAROLIEiJ_G0024922) #24	Usp13 (MGP_CAROLIEiJ_G0024923) #25	Pex5l (MGP_CAROLIEiJ_G0024924) #26	Ttc14 (MGP_CAROLIEiJ_G0024925) #27	Ccdc39 (MGP_CAROLIEiJ_G0024926) #28	Fxr1 (MGP_CAROLIEiJ_G0024927) #29	MGP_CAROLIEiJ_G0024928 #30	Sox2 (MGP_CAROLIEiJ_G0024929) #31	Atp11b (MGP_CAROLIEiJ_G0024930) #32	MGP_CAROLIEiJ_G0024931 #33	Mccc1 (MGP_CAROLIEiJ_G0024932) #34	MGP_CAROLIEiJ_G0024933 #35	MGP_CAROLIEiJ_G0024934 #36	Zfp267 (MGP_CAROLIEiJ_G0024935) #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000160075 #7	ENSGT00390000002757 #8	ENSGT00390000015520 #9	ENSGT00940000154964 #10	ENSGT00940000153497.E #11	ENSGT00940000158435 #12	ENSGT00890000139496 #13	ENSGT00940000155893.b #14	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.a.a ##35	ENSGT00940000157312 #36	ENSGT00950000183169.C #37
Mouse	MODERN SPECIES	12	Samd7 (ENSMUSG00000051860) #7	Sec62 (ENSMUSG00000027706) #8	Gpr160 (ENSMUSG00000037661) #9	Phc3 (ENSMUSG00000037652) #10	Prkci (ENSMUSG00000037643) #11	Skil (ENSMUSG00000027660) #12	Cldn11 (ENSMUSG00000037625) #13	Slc7a14 (ENSMUSG00000069072) #14	Kcnmb2 (ENSMUSG00000037610) #15	Zmat3 (ENSMUSG00000027663) #16	Pik3ca (ENSMUSG00000027665) #17	Kcnmb3 (ENSMUSG00000091091) #18	Zfp639 (ENSMUSG00000027667) #19	Mfn1 (ENSMUSG00000027668) #20	Gnb4 (ENSMUSG00000027669) #21	Actl6a (ENSMUSG00000027671) #22	Mrpl47 (ENSMUSG00000037531) #23	Ndufb5 (ENSMUSG00000027673) #24	Usp13 (ENSMUSG00000056900) #25	Pex5l (ENSMUSG00000027674) #26	Ttc14 (ENSMUSG00000027677) #27	Ccdc39 (ENSMUSG00000027676) #28	Fxr1 (ENSMUSG00000027680) #29	Dnajc19 (ENSMUSG00000027679) #30	Sox2 (ENSMUSG00000074637) #31	Atp11b (ENSMUSG00000037400) #32	Dcun1d1 (ENSMUSG00000027708) #33	Mccc1 (ENSMUSG00000027709) #34	Ccdc144b (ENSMUSG00000047696) #35	Acad9 (ENSMUSG00000027710) #36	Zfp267 (ENSMUSG00000033883) #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000160075 #7	ENSGT00390000002757 #8	ENSGT00390000015520 #9	ENSGT00940000154964 #10	ENSGT00940000153497.E #11	ENSGT00940000158435 #12	ENSGT00890000139496 #13	ENSGT00940000155893.b #14	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.a.a ##35	ENSGT00940000157312 #36	ENSGT00950000183169.C #37
spretus	MODERN SPECIES	12	Samd7 (MGP_SPRETEiJ_G0025839) #7	Sec62 (MGP_SPRETEiJ_G0025840) #8	Gpr160 (MGP_SPRETEiJ_G0025841) #9	Phc3 (MGP_SPRETEiJ_G0025842) #10	Prkci (MGP_SPRETEiJ_G0025843) #11	Skil (MGP_SPRETEiJ_G0025844) #12	Cldn11 (MGP_SPRETEiJ_G0025845) #13	Slc7a14 (MGP_SPRETEiJ_G0025846) #14	Kcnmb2 (MGP_SPRETEiJ_G0025847) #15	Zmat3 (MGP_SPRETEiJ_G0025848) #16	Pik3ca (MGP_SPRETEiJ_G0025849) #17	Kcnmb3 (MGP_SPRETEiJ_G0025850) #18	Zfp639 (MGP_SPRETEiJ_G0025851) #19	Mfn1 (MGP_SPRETEiJ_G0025852) #20	Gnb4 (MGP_SPRETEiJ_G0025853) #21	Actl6a (MGP_SPRETEiJ_G0025854) #22	Mrpl47 (MGP_SPRETEiJ_G0025855) #23	Ndufb5 (MGP_SPRETEiJ_G0025856) #24	Usp13 (MGP_SPRETEiJ_G0025857) #25	Pex5l (MGP_SPRETEiJ_G0025858) #26	Ttc14 (MGP_SPRETEiJ_G0025859) #27	Ccdc39 (MGP_SPRETEiJ_G0025860) #28	Fxr1 (MGP_SPRETEiJ_G0025861) #29	Dnajc19 (MGP_SPRETEiJ_G0025862) #30	Sox2 (MGP_SPRETEiJ_G0025863) #31	Atp11b (MGP_SPRETEiJ_G0025864) #32	MGP_SPRETEiJ_G0025865 #33	Mccc1 (MGP_SPRETEiJ_G0025866) #34	MGP_SPRETEiJ_G0025867 ##35	Acad9 (MGP_SPRETEiJ_G0025868) #36	Zfp267 (MGP_SPRETEiJ_G0025869) #37
Steppe mouse	MODERN SPECIES	2721											ENSMSIG00000031669 #17	Kcnmb3 (ENSMSIG00000031664) #18	Zfp639 (ENSMSIG00000031663) #19	Mfn1 (ENSMSIG00000031656) #20	Gnb4 (ENSMSIG00000031655) #21	Actl6a (ENSMSIG00000031649) #22	ENSMSIG00000031644 #23	ENSMSIG00000031643	Ndufb5 (ENSMSIG00000031641) #24	Usp13 (ENSMSIG00000031514) #25	ENSMSIG00000031504	Pex5l (ENSMSIG00000031307) #26
Shrew mouse	MODERN SPECIES	17	Samd7 (MGP_PahariEiJ_G0026350) #7	Sec62 (MGP_PahariEiJ_G0026351) #8	Gpr160 (MGP_PahariEiJ_G0026352) #9	Phc3 (MGP_PahariEiJ_G0026353) #10	Prkci (MGP_PahariEiJ_G0026354) #11	Skil (MGP_PahariEiJ_G0026355) #12	Cldn11 (MGP_PahariEiJ_G0026356) #13	Slc7a14 (MGP_PahariEiJ_G0026357) #14	Kcnmb2 (MGP_PahariEiJ_G0026358) #15	Zmat3 (MGP_PahariEiJ_G0026359) #16	Pik3ca (MGP_PahariEiJ_G0026360) #17	Kcnmb3 (MGP_PahariEiJ_G0026361) #18	Zfp639 (MGP_PahariEiJ_G0026362) #19	Mfn1 (MGP_PahariEiJ_G0026363) #20	Gnb4 (MGP_PahariEiJ_G0026364) #21	Actl6a (MGP_PahariEiJ_G0026365) #22	Mrpl47 (MGP_PahariEiJ_G0026366) #23	Ndufb5 (MGP_PahariEiJ_G0026367) #24	Usp13 (MGP_PahariEiJ_G0026368) #25	Pex5l (MGP_PahariEiJ_G0026369) #26	MGP_PahariEiJ_G0026370 #27	Fxr1 (MGP_PahariEiJ_G0026371) #29	Dnajc19 (MGP_PahariEiJ_G0026372) #30	Sox2 (MGP_PahariEiJ_G0026373) #31	MGP_PahariEiJ_G0026374 #33	Zfp267 (MGP_PahariEiJ_G0026375) #37	Qrfpr (MGP_PahariEiJ_G0026376)	Anxa5 (MGP_PahariEiJ_G0026377)	MGP_PahariEiJ_G0026378	Exosc9 (MGP_PahariEiJ_G0026379)	Ccna2 (MGP_PahariEiJ_G0026380)
Rat	MODERN SPECIES	11	Samd7 (ENSRNOG00000027995) #7	Lrrc31 (ENSRNOG00000027971)	Lrriq4 (ENSRNOG00000009004)	Lrrc34 (ENSRNOG00000027935)	Mynn (ENSRNOG00000027923)	Actrt3 (ENSRNOG00000027908)	Mecom (ENSRNOG00000012645)	Egfem1 (ENSRNOG00000023908)	Kcnmb2 (ENSRNOG00000010094) #15	Zmat3 (ENSRNOG00000063864) #16	Pik3ca (ENSRNOG00000056371) #17	Kcnmb3 (ENSRNOG00000027836) #18	Zfp639 (ENSRNOG00000043053) #19	Mfn1 (ENSRNOG00000011057) #20	Gnb4 (ENSRNOG00000011070) #21	Actl6a (ENSRNOG00000011553) #22	Mrpl47 (ENSRNOG00000011639) #23	Ndufb5 (ENSRNOG00000011949) #24	Usp13 (ENSRNOG00000030639) #25	Pex5l (ENSRNOG00000011211) #26	Ttc14 (ENSRNOG00000011261) #27	Ccdc39 (ENSRNOG00000011440) #28	Fxr1 (ENSRNOG00000051480) #29	Dnajc19 (ENSRNOG00000049819) #30	Sox2 (ENSRNOG00000012199) #31	Atp11b (ENSRNOG00000052116) #32	Dcun1d1 (ENSRNOG00000012734) #33	Mccc1 (ENSRNOG00000013293) #34	Ccdc144b (ENSRNOG00000056177) ##35	ENSRNOG00000065565	Acad9 (ENSRNOG00000014178) #36
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000160075 #7	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.g.a #27	ENSGT00390000013701.g.b #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.a ##30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.b.b #35	ENSGT00940000153661.a.a ##35
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00940000160075 #7	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.g.a #27	ENSGT00390000013701.g.b #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.a ##30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.a.a ##35	ENSGT00940000157312 #36
Chinese hamster chok1gshd	MODERN SPECIES	352	Samd7 (ENSCGRG00001019079) #7	Lrriq4 (ENSCGRG00001016290)	Lrrc34 (ENSCGRG00001011347)	Mynn (ENSCGRG00001011074)	Actrt3 (ENSCGRG00001000653)	ENSCGRG00001010291	Mecom (ENSCGRG00001011582)	Egfem1 (ENSCGRG00001021334)	Kcnmb2 (ENSCGRG00001009106) #15	Zmat3 (ENSCGRG00001012339) #16	Pik3ca (ENSCGRG00001019897) #17	Kcnmb3 (ENSCGRG00001008742) #18	ENSCGRG00001021748 #19	ENSCGRG00001022585 #20	Gnb4 (ENSCGRG00001021439) #21	Actl6a (ENSCGRG00001013395) #22	Mrpl47 (ENSCGRG00001015111) #23	Ndufb5 (ENSCGRG00001005505) #24	Usp13 (ENSCGRG00001017123) #25	Pex5l (ENSCGRG00001018482) #26	Ttc14 (ENSCGRG00001021605) #27	Ccdc39 (ENSCGRG00001018347) #28	Fxr1 (ENSCGRG00001024795) #29	ENSCGRG00001000090 ##30	Sox2 (ENSCGRG00001008732) #31	Atp11b (ENSCGRG00001021308) #32	ENSCGRG00001013592	ENSCGRG00001019778 #33	Mccc1 (ENSCGRG00001012469) #34	ENSCGRG00001017668 ##35	Acad9 (ENSCGRG00001017444) #36
Golden Hamster	MODERN SPECIES	636	Gpr160 (ENSMAUG00000009648) #9	Sec62 (ENSMAUG00000011713) #8	Lrriq4 (ENSMAUG00000017468)	Lrrc34 (ENSMAUG00000011698)	Mynn (ENSMAUG00000018740)	Actrt3 (ENSMAUG00000014894)	ENSMAUG00000017495	Mecom (ENSMAUG00000017146)	Egfem1 (ENSMAUG00000012184)	Kcnmb2 (ENSMAUG00000006173) #15	Zmat3 (ENSMAUG00000001986) #16	Pik3ca (ENSMAUG00000019874) #17	Kcnmb3 (ENSMAUG00000005213) #18	Mfn1 (ENSMAUG00000010778) #20	Gnb4 (ENSMAUG00000011589) #21	ENSMAUG00000018855 #22	Mrpl47 (ENSMAUG00000010772) #23	Ndufb5 (ENSMAUG00000017888) #24	Usp13 (ENSMAUG00000008996) #25	Pex5l (ENSMAUG00000011108) #26	ENSMAUG00000009258 #27	ENSMAUG00000000140 #27	Ccdc39 (ENSMAUG00000009369) #28	Fxr1 (ENSMAUG00000001188) #29	ENSMAUG00000011285 ##30	Sox2 (ENSMAUG00000017052) #31	Atp11b (ENSMAUG00000000325) #32	ENSMAUG00000018021 #33	ENSMAUG00000019275	Mccc1 (ENSMAUG00000018926) #34	ENSMAUG00000000987
Cricetidae_B	ANCESTRAL SPECIES	55	ENSGT00940000160075 #7	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.g.a #27	ENSGT00390000013701.g.b #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.a ##30	ENSGT00940000154384.g ##30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.b.b #35
Prairie vole	MODERN SPECIES		Lrriq4 (ENSMOCG00000004550)	ENSMOCG00000005957	Lrrc34 (ENSMOCG00000016121)	Mynn (ENSMOCG00000015696)	Actrt3 (ENSMOCG00000015666)	ENSMOCG00000020206	Mecom (ENSMOCG00000021596)	Egfem1 (ENSMOCG00000018732)	Kcnmb2 (ENSMOCG00000017078) #15	Zmat3 (ENSMOCG00000018844) #16	Pik3ca (ENSMOCG00000013980) #17	Kcnmb3 (ENSMOCG00000016804) #18	Zfp639 (ENSMOCG00000020301) #19	Mfn1 (ENSMOCG00000019248) #20	Gnb4 (ENSMOCG00000015281) #21	Actl6a (ENSMOCG00000014148) #22	ENSMOCG00000007933 #23	ENSMOCG00000019293 #24	Usp13 (ENSMOCG00000015377) #25	Pex5l (ENSMOCG00000014372) #26	ENSMOCG00000020574 #27	ENSMOCG00000012924 #27	Ccdc39 (ENSMOCG00000018440) #28	Fxr1 (ENSMOCG00000017707) #29	Dnajc19 (ENSMOCG00000004841) ##30	Sox2 (ENSMOCG00000008169) #31	ENSMOCG00000011558	Atp11b (ENSMOCG00000013153) #32	ENSMOCG00000005771 #33	Mccc1 (ENSMOCG00000003671) #34	ENSMOCG00000009970 ##35
Northern American deer mouse	MODERN SPECIES	19	Lrrc34 (ENSPEMG00000002888)	Mynn (ENSPEMG00000000610)	Actrt3 (ENSPEMG00000018524)	ENSPEMG00000013723	Mecom (ENSPEMG00000013270)	ENSPEMG00000029688	Egfem1 (ENSPEMG00000008460)	Kcnmb2 (ENSPEMG00000000476) #15	ENSPEMG00000026565	Zmat3 (ENSPEMG00000019154) #16	Pik3ca (ENSPEMG00000018399) #17	Kcnmb3 (ENSPEMG00000015081) #18	Zfp639 (ENSPEMG00000011611) #19	Mfn1 (ENSPEMG00000010348) #20	Gnb4 (ENSPEMG00000028778) #21	Actl6a (ENSPEMG00000015742) #22	Mrpl47 (ENSPEMG00000026294) #23	Ndufb5 (ENSPEMG00000018635) #24	Usp13 (ENSPEMG00000001021) #25	Pex5l (ENSPEMG00000006300) #26	Ttc14 (ENSPEMG00000013671) #27	Ccdc39 (ENSPEMG00000017829) #28	Fxr1 (ENSPEMG00000012962) #29	ENSPEMG00000006887 ##30	ENSPEMG00000026113	Sox2 (ENSPEMG00000013974) #31	ENSPEMG00000024881	Atp11b (ENSPEMG00000001656) #32	ENSPEMG00000018868 #33	Mccc1 (ENSPEMG00000014164) #34	ENSPEMG00000011597 #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1036									Kcnmb2 (ENSNGAG00000023449) #15	Zmat3 (ENSNGAG00000023602) #16	Pik3ca (ENSNGAG00000011770) #17	Kcnmb3 (ENSNGAG00000023104) #18	Zfp639 (ENSNGAG00000017433) #19	Mfn1 (ENSNGAG00000022452) #20	Gnb4 (ENSNGAG00000023855) #21	Actl6a (ENSNGAG00000023000) #22	Mrpl47 (ENSNGAG00000022354) #23	Ndufb5 (ENSNGAG00000019121) #24	Usp13 (ENSNGAG00000008457) #25	Pex5l (ENSNGAG00000021052) #26	Ttc14 (ENSNGAG00000019537) #27	Ccdc39 (ENSNGAG00000023870) #28	Fxr1 (ENSNGAG00000021726) #29	ENSNGAG00000012574 ##30
Lesser Egyptian jerboa	MODERN SPECIES	47	ENSJJAG00000023375	Ghsr (ENSJJAG00000022390)	Nceh1 (ENSJJAG00000023562)	Ect2 (ENSJJAG00000001186)	Spata16 (ENSJJAG00000021398)	Nlgn1 (ENSJJAG00000018596)	Naaladl2 (ENSJJAG00000001804)	ENSJJAG00000012112	Kcnmb2 (ENSJJAG00000021914) #15	Zmat3 (ENSJJAG00000004288) #16	Pik3ca (ENSJJAG00000021453) #17	Kcnmb3 (ENSJJAG00000023050) #18	ENSJJAG00000024013 #19	Mfn1 (ENSJJAG00000019731) #20	ENSJJAG00000023681 #21	Actl6a (ENSJJAG00000017810) #22	Mrpl47 (ENSJJAG00000020002) #23	Ndufb5 (ENSJJAG00000012502) #24	Usp13 (ENSJJAG00000018696) #25	Pex5l (ENSJJAG00000000620) #26	ENSJJAG00000023040 #27	Ccdc39 (ENSJJAG00000016989) #28	Fxr1 (ENSJJAG00000019175) #29	ENSJJAG00000015744 ##30	Sox2 (ENSJJAG00000002483) #31	Atp11b (ENSJJAG00000018460) #32	ENSJJAG00000019826 #33	Mccc1 (ENSJJAG00000003543) #34	ENSJJAG00000016856 #35	Ptpdc1 (ENSJJAG00000015386)	Barx1 (ENSJJAG00000012954)
Kangaroo rat	MODERN SPECIES	493													Zfp639 (ENSDORG00000004733) #19	Mfn1 (ENSDORG00000016388) #20	Gnb4 (ENSDORG00000015363) #21	Actl6a (ENSDORG00000007648) #22	Mrpl47 (ENSDORG00000007650) #23	Ndufb5 (ENSDORG00000007651) #24	ENSDORG00000001060	Usp13 (ENSDORG00000013004) #25	Pex5l (ENSDORG00000013007) #26	Ttc14 (ENSDORG00000002727) #27	Ccdc39 (ENSDORG00000002728) #28	Fxr1 (ENSDORG00000005853) #29	ENSDORG00000005862 ##30
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00910000147422	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000154384.h.a ##30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00950000182899.C.a
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.a ##30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.a.a.a ##33	ENSGT00940000156941 #34	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000033259	TBL1XR1 (ENSHGLG00000044077)	ENSHGLG00000050422	ENSHGLG00000019115	ENSHGLG00000038549	ENSHGLG00000016930	KCNMB2 (ENSHGLG00000041894) #15	ENSHGLG00000011277	ZMAT3 (ENSHGLG00000011523) #16	ENSHGLG00000011894 #17	KCNMB3 (ENSHGLG00000012132) #18	ZNF639 (ENSHGLG00000050776) #19	MFN1 (ENSHGLG00000012515) #20	ENSHGLG00000044219	GNB4 (ENSHGLG00000012880) #21	ACTL6A (ENSHGLG00000013350) #22	MRPL47 (ENSHGLG00000033799) #23	NDUFB5 (ENSHGLG00000014377) #24	USP13 (ENSHGLG00000014472) #25	PEX5L (ENSHGLG00000016946) #26	ENSHGLG00000016952	TTC14 (ENSHGLG00000016959) #27	CCDC39 (ENSHGLG00000016969) #28	ENSHGLG00000039606	FXR1 (ENSHGLG00000018814) #29	ENSHGLG00000014387 ##30	ENSHGLG00000050891	ENSHGLG00000032116	SOX2 (ENSHGLG00000046210) #31	ATP11B (ENSHGLG00000014553) #32	ENSHGLG00000014589 ##33
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000154384.h.a ##30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.a.a.a ##33	ENSGT00940000156941 #34	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.a ##30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000170892	ENSGT00940000156941 #34	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263
Degu	DUPLICATION
Degu	MODERN SPECIES	339														MFN1 (ENSODEG00000002887) #20	GNB4 (ENSODEG00000002845) #21	ENSODEG00000002804 #22	ENSODEG00000002762 #23	NDUFB5 (ENSODEG00000002740) #24	ENSODEG00000002050	ENSODEG00000018753	USP13 (ENSODEG00000001943) #25	PEX5L (ENSODEG00000001608) #26	ENSODEG00000001450 #27	CCDC39 (ENSODEG00000001427) #28	ENSODEG00000001368	ENSODEG00000001069 #29	ENSODEG00000000914 #30
Degu	MODERN SPECIES	71	ENSODEG00000005791	ENSODEG00000005325	KBTBD8 (ENSODEG00000005749)	ENSODEG00000005664	LRIG1 (ENSODEG00000005673)	SLC25A26 (ENSODEG00000006331)	SLC41A3 (ENSODEG00000006800)	ENSODEG00000006480	ENSODEG00000005644	KLF15 (ENSODEG00000005067)	CFAP100 (ENSODEG00000006308)	ZXDC (ENSODEG00000006787)	ENSODEG00000019268	UROC1 (ENSODEG00000006472)	CHST13 (ENSODEG00000006099)	ENSODEG00000005156 #22	ENSODEG00000007573	KCNJ3 (ENSODEG00000005298)	GALNT13 (ENSODEG00000004968)	RPRM (ENSODEG00000019321)
Long-tailed chinchilla	MODERN SPECIES	127	NCEH1 (ENSCLAG00000011865)	ENSCLAG00000013454	ECT2 (ENSCLAG00000015030)	SPATA16 (ENSCLAG00000016484)	NLGN1 (ENSCLAG00000010604)	NAALADL2 (ENSCLAG00000012428)	ENSCLAG00000018045	TBL1XR1 (ENSCLAG00000013893)	KCNMB2 (ENSCLAG00000014319) #15	ZMAT3 (ENSCLAG00000013464) #16	PIK3CA (ENSCLAG00000015135) #17	KCNMB3 (ENSCLAG00000014741) #18	ZNF639 (ENSCLAG00000011168) #19	MFN1 (ENSCLAG00000015912) #20	GNB4 (ENSCLAG00000015522) #21	ACTL6A (ENSCLAG00000012251) #22	ENSCLAG00000015039 #23	ENSCLAG00000014903 #24	USP13 (ENSCLAG00000015308) #25	PEX5L (ENSCLAG00000014042) #26	TTC14 (ENSCLAG00000013302) #27	CCDC39 (ENSCLAG00000012683) #28	FXR1 (ENSCLAG00000014182) #29	DNAJC19 (ENSCLAG00000011246) ##30	SOX2 (ENSCLAG00000017978) #31	ATP11B (ENSCLAG00000012551) #32	ENSCLAG00000014207	MCCC1 (ENSCLAG00000014174) #34	LMLN (ENSCLAG00000011520)	ENSCLAG00000012348	IQCG (ENSCLAG00000013851)
Guinea pig	MODERN SPECIES	47	ENSCPOG00000024974	ENSCPOG00000024155	NCEH1 (ENSCPOG00000033460)	ECT2 (ENSCPOG00000004744)	SPATA16 (ENSCPOG00000006395)	NLGN1 (ENSCPOG00000005752)	NAALADL2 (ENSCPOG00000013413)	TBL1XR1 (ENSCPOG00000005472)	KCNMB2 (ENSCPOG00000013955) #15	ZMAT3 (ENSCPOG00000003865) #16	PIK3CA (ENSCPOG00000006574) #17	KCNMB3 (ENSCPOG00000025991) #18	ZNF639 (ENSCPOG00000039664) #19	MFN1 (ENSCPOG00000033188) #20	GNB4 (ENSCPOG00000034790) #21	ACTL6A (ENSCPOG00000025370) #22	ENSCPOG00000002312 #23	NDUFB5 (ENSCPOG00000036110) #24	USP13 (ENSCPOG00000002315) #25	PEX5L (ENSCPOG00000002319) #26	TTC14 (ENSCPOG00000015311) #27	CCDC39 (ENSCPOG00000015314) #28	FXR1 (ENSCPOG00000010418) #29	ENSCPOG00000021198 #30	SPTLC1 (ENSCPOG00000015106)	ROR2 (ENSCPOG00000021707)	AUH (ENSCPOG00000001066)	SYK (ENSCPOG00000010410)
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00910000147422	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.k #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.g ##30	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00950000182899.C.a
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	1	SPATA16 (ENSSVLG00005008419)	NLGN1 (ENSSVLG00005008366)	ENSSVLG00005008340	NAALADL2 (ENSSVLG00005008257)	TBL1XR1 (ENSSVLG00005008184)	ENSSVLG00005008160	KCNMB2 (ENSSVLG00005008096) #15	ENSSVLG00005008059	ZMAT3 (ENSSVLG00005008037) #16	PIK3CA (ENSSVLG00005007992) #17	KCNMB3 (ENSSVLG00005007870) #18	ENSSVLG00005007822	ENSSVLG00005007788 #19	MFN1 (ENSSVLG00005007726) #20	GNB4 (ENSSVLG00005007689) #21	ENSSVLG00005007595 #22	MRPL47 (ENSSVLG00005007505) #23	ENSSVLG00005007458 #24	USP13 (ENSSVLG00005007303) #25	ENSSVLG00005007236	PEX5L (ENSSVLG00005006552) #26	ENSSVLG00005006293	TTC14 (ENSSVLG00005006262) #27	CCDC39 (ENSSVLG00005006018) #28	ENSSVLG00005005952	FXR1 (ENSSVLG00005005627) #29	ENSSVLG00005005504 ##30	SOX2 (ENSSVLG00005005486) #31	ENSSVLG00005005467	ATP11B (ENSSVLG00005005419) #32	DCUN1D1 (ENSSVLG00005005371) #33
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005014167	ENSSVLG00005014346	ENSSVLG00005014416	ENSSVLG00005014453	ENSSVLG00005014497	ENSSVLG00005014517	ENSSVLG00005014539	ENSSVLG00005014578	ENSSVLG00005014632	ENSSVLG00005014679	ENSSVLG00005014732	ENSSVLG00005014776	ENSSVLG00005014856	OR8B8 (ENSSVLG00005014922)	ENSSVLG00005014945	ENSSVLG00005014960 #22	OR8B12 (ENSSVLG00005015073)	OR8A1 (ENSSVLG00005015091)	PANX3 (ENSSVLG00005015110)	TBRG1 (ENSSVLG00005015166)	SIAE (ENSSVLG00005015262)	SPA17 (ENSSVLG00005015480)	NRGN (ENSSVLG00005015507)	VSIG2 (ENSSVLG00005015545)	ESAM (ENSSVLG00005015674)	MSANTD2 (ENSSVLG00005015771)	ENSSVLG00005015859	ENSSVLG00005015882	ENSSVLG00005015942	ROBO4 (ENSSVLG00005016212)	HEPACAM (ENSSVLG00005016550)
Marmotini	ANCESTRAL SPECIES	59	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00910000147422	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.k #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.g ##30	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00950000182899.C.a
Alpin marmot	MODERN SPECIES	37	SPATA16 (ENSMMMG00000004708)	NLGN1 (ENSMMMG00000004664)	ENSMMMG00000004633	ENSMMMG00000004628	NAALADL2 (ENSMMMG00000004611)	ENSMMMG00000004587	ENSMMMG00000004514	KCNMB2 (ENSMMMG00000004486) #15	ZMAT3 (ENSMMMG00000004454) #16	PIK3CA (ENSMMMG00000004387) #17	ENSMMMG00000004373	KCNMB3 (ENSMMMG00000004362) #18	ENSMMMG00000004333 #19	MFN1 (ENSMMMG00000004267) #20	GNB4 (ENSMMMG00000004203) #21	ACTL6A (ENSMMMG00000004175) #22	MRPL47 (ENSMMMG00000004133) #23	ENSMMMG00000004120	NDUFB5 (ENSMMMG00000004098) #24	USP13 (ENSMMMG00000004025) #25	PEX5L (ENSMMMG00000003637) #26	ENSMMMG00000003599	ENSMMMG00000003524 #27	ENSMMMG00000003512 #27	CCDC39 (ENSMMMG00000003487) #28	ENSMMMG00000003471	FXR1 (ENSMMMG00000003158) #29	ENSMMMG00000003137 ##30	ENSMMMG00000003124	SOX2 (ENSMMMG00000003111) #31	ENSMMMG00000003075
Marmotini_b	ANCESTRAL SPECIES	149	ENSGT00940000156299.t	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00910000147422	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00390000015224.c.b.b.a.a	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.k #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.g ##30	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00950000182899.C.a	ENSGT00940000159676
Squirrel	MODERN SPECIES	166							TBL1XR1 (ENSSTOG00000014252)	KCNMB2 (ENSSTOG00000002726) #15	ZMAT3 (ENSSTOG00000028436) #16	PIK3CA (ENSSTOG00000012906) #17	KCNMB3 (ENSSTOG00000013715) #18	ZNF639 (ENSSTOG00000001442) #19	MFN1 (ENSSTOG00000005167) #20	GNB4 (ENSSTOG00000005210) #21	ENSSTOG00000033903	ACTL6A (ENSSTOG00000010540) #22	MRPL47 (ENSSTOG00000032487) #23	NDUFB5 (ENSSTOG00000010557) #24	USP13 (ENSSTOG00000002367) #25	PEX5L (ENSSTOG00000002383) #26	TTC14 (ENSSTOG00000003827) #27	ENSSTOG00000003847 #28	ENSSTOG00000011392	FXR1 (ENSSTOG00000010612) #29	ENSSTOG00000011508 #30	SOX2 (ENSSTOG00000011011) #31	ATP11B (ENSSTOG00000016462) #32	DCUN1D1 (ENSSTOG00000016465) #33	MCCC1 (ENSSTOG00000010361) #34	ENSSTOG00000010372	B3GNT5 (ENSSTOG00000010399)
Arctic ground squirrel	MODERN SPECIES	22	SPATA16 (ENSUPAG00010022746)	NLGN1 (ENSUPAG00010022744)	NAALADL2 (ENSUPAG00010022740)	ENSUPAG00010022737	TBL1XR1 (ENSUPAG00010022733)	KCNMB2 (ENSUPAG00010022732) #15	ZMAT3 (ENSUPAG00010022730) #16	PIK3CA (ENSUPAG00010022723) #17	ENSUPAG00010022722	KCNMB3 (ENSUPAG00010022719) #18	ENSUPAG00010022718	ZNF639 (ENSUPAG00010022715) #19	MFN1 (ENSUPAG00010022711) #20	GNB4 (ENSUPAG00010022702) #21	ENSUPAG00010022699	ACTL6A (ENSUPAG00010022696) #22	MRPL47 (ENSUPAG00010022693) #23	NDUFB5 (ENSUPAG00010022690) #24	USP13 (ENSUPAG00010022684) #25	PEX5L (ENSUPAG00010022611) #26	TTC14 (ENSUPAG00010022594) #27	CCDC39 (ENSUPAG00010022590) #28	ENSUPAG00010022589	FXR1 (ENSUPAG00010022534) #29	ENSUPAG00010022530 ##30	ATP11B (ENSUPAG00010022507) #32	DCUN1D1 (ENSUPAG00010022504) #33	MCCC1 (ENSUPAG00010022499) #34	ENSUPAG00010022496	ENSUPAG00010022491	ENSUPAG00010022487
Lagomorpha	ANCESTRAL SPECIES	6	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.a ##30	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00950000182899.C.a	ENSGT00550000074917	ENSGT00940000153783.b.b.c.a.b
Rabbit	MODERN SPECIES	5	NLGN1 (ENSOCUG00000009269)	ENSOCUG00000032927	NAALADL2 (ENSOCUG00000002042)	ENSOCUG00000006064	ENSOCUG00000020904	ENSOCUG00000031291	ENSOCUG00000031152	ENSOCUG00000039529	TBL1XR1 (ENSOCUG00000017078)	KCNMB2 (ENSOCUG00000005494) #15	ZMAT3 (ENSOCUG00000004658) #16	PIK3CA (ENSOCUG00000010631) #17	KCNMB3 (ENSOCUG00000010643) #18	MFN1 (ENSOCUG00000000928) #20	GNB4 (ENSOCUG00000000931) #21	ACTL6A (ENSOCUG00000017883) #22	MRPL47 (ENSOCUG00000017886) #23	NDUFB5 (ENSOCUG00000017887) #24	USP13 (ENSOCUG00000006043) #25	ENSOCUG00000039309	PEX5L (ENSOCUG00000006053) #26	TTC14 (ENSOCUG00000000806) #27	CCDC39 (ENSOCUG00000000812) #28	FXR1 (ENSOCUG00000023518) #29	DNAJC19 (ENSOCUG00000014043) ##30	ENSOCUG00000035765	ENSOCUG00000031658	ENSOCUG00000028029	ATP11B (ENSOCUG00000012358) #32	DCUN1D1 (ENSOCUG00000012386) #33	MCCC1 (ENSOCUG00000012393) #34
Pika	MODERN SPECIES	1416																ACTL6A (ENSOPRG00000007803) #22	MRPL47 (ENSOPRG00000007831) #23	NDUFB5 (ENSOPRG00000007854) #24
Tree shrew	MODERN SPECIES	1702																ACTL6A (ENSTBEG00000006118) #22	ENSTBEG00000006657 #23