Gnathostomata	ANCESTRAL SPECIES	133					ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000000263	ENSGT00950000183070.a.a
Euteleostomi	ANCESTRAL SPECIES	66	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000000263	ENSGT00950000183070.a.a
Sarcopterygii	ANCESTRAL SPECIES	26	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000161734
Tetrapoda	ANCESTRAL SPECIES	12	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000161734
Amniota	ANCESTRAL SPECIES	13	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676
Mammalia	ANCESTRAL SPECIES	7	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676
Theria	ANCESTRAL SPECIES	5	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676
Eutheria	ANCESTRAL SPECIES	5	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00950000182899.C.a
Primates	ANCESTRAL SPECIES	1	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00950000182899.C.a
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00950000182899.C.a
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00530000063564.b.e.b #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00940000154639.n.a #27	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000154942.h.q.b #30	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b.g.a
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00530000063564.b.e.b #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a #27	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000154942.h.q.b #30	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b.g.a	ENSGT00940000156941
Hominidae	ANCESTRAL SPECIES	2	ENSGT00940000155789 #7	ENSGT00940000153244.B.ec.b #8	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00530000063564.b.e.b #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a #27	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b.g.a	ENSGT00940000156941	ENSGT00940000164015
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00940000155789 #7	ENSGT00940000153244.B.ec.b #8	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00860000135711	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00530000063564.b.e.b #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a #27	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000154942.h.q.b #30	ENSGT00940000158890.q #31	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b.g.a	ENSGT00940000156941
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT00940000153244.B.ec.b #8	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00530000063564.b.e.b #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a #27	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000154942.h.q.b #30	ENSGT00940000158890.q #31	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b.g.a	ENSGT00940000156941
Pan	ANCESTRAL SPECIES	2	ENSGT00940000155789 #7	ENSGT00940000153244.B.ec.b #8	ENSGT01030000234598.a.b #9	ENSGT00940000158854 #10	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00530000063564.b.e.b #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a #27	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000154942.h.q.b #30	ENSGT00940000158890.q #31	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00910000147572 #34	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k
Bonobo	MODERN SPECIES	16	NLGN1 (ENSPPAG00000030168) #7	ENSPPAG00000042448 #8	NAALADL2 (ENSPPAG00000032916) #9	ENSPPAG00000024602 #10	TBL1XR1 (ENSPPAG00000042757) #11	ENSPPAG00000028436 #12	KCNMB2 (ENSPPAG00000035742) #13	ZMAT3 (ENSPPAG00000035483) #14	PIK3CA (ENSPPAG00000028292) #15	KCNMB3 (ENSPPAG00000012788) #16	ENSPPAG00000040290 #17	ZNF639 (ENSPPAG00000031214) #18	MFN1 (ENSPPAG00000043805) #19	GNB4 (ENSPPAG00000043825) #20	ENSPPAG00000031844 #21	ACTL6A (ENSPPAG00000031814) #22	MRPL47 (ENSPPAG00000028033) #23	NDUFB5 (ENSPPAG00000032519) #24	USP13 (ENSPPAG00000001256) #25	PEX5L (ENSPPAG00000036179) #26	ENSPPAG00000001167 #27	TTC14 (ENSPPAG00000040361) #28	CCDC39 (ENSPPAG00000027438) #29	ENSPPAG00000015512 #30	ENSPPAG00000043783 #31	ENSPPAG00000037630 #32	DNAJC19 (ENSPPAG00000019978) #33	ENSPPAG00000027884 #34	SOX2 (ENSPPAG00000041083) #35	ENSPPAG00000036037 #36	ENSPPAG00000039113 #37
Chimpanzee	MODERN SPECIES	16	NLGN1 (ENSPTRG00000024345) #7	ENSPTRG00000045205 #8	NAALADL2 (ENSPTRG00000015638) #9	ENSPTRG00000034248 #10	TBL1XR1 (ENSPTRG00000015639) #11	KCNMB2 (ENSPTRG00000041297) #13	ZMAT3 (ENSPTRG00000015641) #14	PIK3CA (ENSPTRG00000015642) #15	ENSPTRG00000047696	KCNMB3 (ENSPTRG00000015643) #16	ENSPTRG00000051036 #17	ZNF639 (ENSPTRG00000015644) #18	MFN1 (ENSPTRG00000015645) #19	GNB4 (ENSPTRG00000015646) #20	ENSPTRG00000050962 #21	ACTL6A (ENSPTRG00000023973) #22	MRPL47 (ENSPTRG00000015648) #23	NDUFB5 (ENSPTRG00000015649) #24	USP13 (ENSPTRG00000015650) #25	PEX5L (ENSPTRG00000015651) #26	ENSPTRG00000049028 #27	TTC14 (ENSPTRG00000015652) #28	CCDC39 (ENSPTRG00000015653) #29	ENSPTRG00000052129 #30	ENSPTRG00000045151 #31	ENSPTRG00000015656 #32	DNAJC19 (ENSPTRG00000030046) #33	ENSPTRG00000047311 #34	SOX2 (ENSPTRG00000030045) #35	ENSPTRG00000050568 #36	ENSPTRG00000047631
Human	MODERN SPECIES	15	TNFSF10 (ENSG00000121858)	NCEH1 (ENSG00000144959)	ECT2 (ENSG00000114346)	SPATA16 (ENSG00000144962)	NLGN1 (ENSG00000169760) #7	NAALADL2 (ENSG00000177694) #9	TBL1XR1 (ENSG00000177565) #11	KCNMB2 (ENSG00000197584) #13	ENSG00000275163	ZMAT3 (ENSG00000172667) #14	PIK3CA (ENSG00000121879) #15	KCNMB3 (ENSG00000171121) #16	ZNF639 (ENSG00000121864) #18	MFN1 (ENSG00000171109) #19	GNB4 (ENSG00000114450) #20	ACTL6A (ENSG00000136518) #22	MRPL47 (ENSG00000136522) #23	NDUFB5 (ENSG00000136521) #24	USP13 (ENSG00000058056) #25	PEX5L (ENSG00000114757) #26	TTC14 (ENSG00000163728) #28	CCDC39 (ENSG00000284862) #29	FXR1 (ENSG00000114416) #32	DNAJC19 (ENSG00000205981) #33	SOX2 (ENSG00000181449) #35	ATP11B (ENSG00000058063)	DCUN1D1 (ENSG00000043093)	MCCC1 (ENSG00000078070)	LAMP3 (ENSG00000078081)	MCF2L2 (ENSG00000053524)	B3GNT5 (ENSG00000176597)
Gorilla	MODERN SPECIES	16	ECT2 (ENSGGOG00000008685)	SPATA16 (ENSGGOG00000002411)	NLGN1 (ENSGGOG00000004187) #7	NAALADL2 (ENSGGOG00000043435) #9	TBL1XR1 (ENSGGOG00000009532) #11	ENSGGOG00000041945	KCNMB2 (ENSGGOG00000015779) #13	ZMAT3 (ENSGGOG00000009975) #14	PIK3CA (ENSGGOG00000009365) #15	KCNMB3 (ENSGGOG00000003933) #16	ENSGGOG00000041059 #17	ZNF639 (ENSGGOG00000025664) #18	MFN1 (ENSGGOG00000009357) #19	GNB4 (ENSGGOG00000026248) #20	ENSGGOG00000002247 #21	ACTL6A (ENSGGOG00000015710) #22	MRPL47 (ENSGGOG00000027171) #23	NDUFB5 (ENSGGOG00000005222) #24	USP13 (ENSGGOG00000034809) #25	PEX5L (ENSGGOG00000003000) #26	ENSGGOG00000043452 #27	TTC14 (ENSGGOG00000003335) #28	CCDC39 (ENSGGOG00000034953) #29	ENSGGOG00000041279 #30	ENSGGOG00000025632 #31	ENSGGOG00000009957 #32	DNAJC19 (ENSGGOG00000009120) #33	ENSGGOG00000040038 #34	ENSGGOG00000013813	ENSGGOG00000037039 #36	ENSGGOG00000022832
Orangutan	MODERN SPECIES	16	SPATA16 (ENSPPYG00000014306)	NLGN1 (ENSPPYG00000014309) #7	ENSPPYG00000030345 #8	NAALADL2 (ENSPPYG00000014311) #9	ENSPPYG00000014312	TBL1XR1 (ENSPPYG00000033167) #11	KCNMB2 (ENSPPYG00000014313) #13	ENSPPYG00000014315 #14	PIK3CA (ENSPPYG00000025901) #15	ENSPPYG00000034294	KCNMB3 (ENSPPYG00000014316) #16	ZNF639 (ENSPPYG00000031916) #18	MFN1 (ENSPPYG00000014318) #19	GNB4 (ENSPPYG00000040073) #20	ENSPPYG00000040586 #21	ACTL6A (ENSPPYG00000014320) #22	MRPL47 (ENSPPYG00000014321) #23	NDUFB5 (ENSPPYG00000037815) #24	USP13 (ENSPPYG00000014322) #25	PEX5L (ENSPPYG00000014323) #26	ENSPPYG00000014324 #28	CCDC39 (ENSPPYG00000014325) #29	FXR1 (ENSPPYG00000014327) #32	DNAJC19 (ENSPPYG00000014328) #33	SOX2 (ENSPPYG00000014330) #35	ENSPPYG00000031318 #36	ATP11B (ENSPPYG00000029655)	ENSPPYG00000029837	MCCC1 (ENSPPYG00000014331)	LAMP3 (ENSPPYG00000014332)	MCF2L2 (ENSPPYG00000014333)
Gibbon	MODERN SPECIES	1	ECT2 (ENSNLEG00000005565)	SPATA16 (ENSNLEG00000005617)	NLGN1 (ENSNLEG00000005618) #7	NAALADL2 (ENSNLEG00000005623) #9	TBL1XR1 (ENSNLEG00000005631) #11	ENSNLEG00000029452 ##12	KCNMB2 (ENSNLEG00000005652) #13	ZMAT3 (ENSNLEG00000005658) #14	PIK3CA (ENSNLEG00000005661) #15	ENSNLEG00000005735 #16	ENSNLEG00000031548 #17	ZNF639 (ENSNLEG00000005744) #18	MFN1 (ENSNLEG00000005745) #19	GNB4 (ENSNLEG00000005751) #20	ENSNLEG00000035220 #21	ACTL6A (ENSNLEG00000035913) #22	MRPL47 (ENSNLEG00000005831) #23	NDUFB5 (ENSNLEG00000034646) #24	USP13 (ENSNLEG00000005851) #25	PEX5L (ENSNLEG00000005874) #26	ENSNLEG00000030368 #27	TTC14 (ENSNLEG00000005900) #28	CCDC39 (ENSNLEG00000005916) #29	ENSNLEG00000033880 #30	FXR1 (ENSNLEG00000005928) #32	DNAJC19 (ENSNLEG00000033702) #33	SOX2 (ENSNLEG00000018940) #35	ENSNLEG00000032218	ENSNLEG00000030225 #36	ENSNLEG00000032897	ATP11B (ENSNLEG00000005959)
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00530000063564.b.e.b #17	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00940000154639.n.a #27	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000154942.h.q.b #30	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b.g.a
Rhinopithecus	ANCESTRAL SPECIES	202							ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.s #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a #27	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645
Black snub-nosed monkey	MODERN SPECIES	74							KCNMB2 (ENSRBIG00000040395) #13	ZMAT3 (ENSRBIG00000029622) #14	PIK3CA (ENSRBIG00000032867) #15	KCNMB3 (ENSRBIG00000028540) #16	ENSRBIG00000041214 #18	MFN1 (ENSRBIG00000035520) #19	ENSRBIG00000029392	GNB4 (ENSRBIG00000026920) #20	ENSRBIG00000032218 #21	ACTL6A (ENSRBIG00000036584) #22	MRPL47 (ENSRBIG00000030725) #23	ENSRBIG00000005151 #24	USP13 (ENSRBIG00000035081) #25	PEX5L (ENSRBIG00000020184) #26	ENSRBIG00000033160 #27	TTC14 (ENSRBIG00000039635) #28	CCDC39 (ENSRBIG00000038461) #29	FXR1 (ENSRBIG00000036968) #32	DNAJC19 (ENSRBIG00000041203) #33	ENSRBIG00000031071 #36	ENSRBIG00000029493
Golden snub-nosed monkey	MODERN SPECIES	678							KCNMB2 (ENSRROG00000032152) #13	ZMAT3 (ENSRROG00000038345) #14	PIK3CA (ENSRROG00000030283) #15	KCNMB3 (ENSRROG00000043983) #16	ENSRROG00000029735 #18	ENSRROG00000023608	MFN1 (ENSRROG00000015013) #19	GNB4 (ENSRROG00000041513) #20	ENSRROG00000019531 #21	ACTL6A (ENSRROG00000035215) #22	MRPL47 (ENSRROG00000034003) #23	ENSRROG00000042687 #24
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00530000063564.b.e.b #17	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000154942.h.q.b #30	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b.g.a	ENSGT00940000156941
Vervet Monkey	MODERN SPECIES	6	ENSCSAG00000018886	ECT2 (ENSCSAG00000012841)	SPATA16 (ENSCSAG00000012878)	NLGN1 (ENSCSAG00000012894) #7	ENSCSAG00000018885	NAALADL2 (ENSCSAG00000012912) #9	TBL1XR1 (ENSCSAG00000012927) #11	ENSCSAG00000018884	KCNMB2 (ENSCSAG00000012931) #13	ZMAT3 (ENSCSAG00000012935) #14	PIK3CA (ENSCSAG00000012948) #15	KCNMB3 (ENSCSAG00000012962) #16	ZNF639 (ENSCSAG00000012977) #18	MFN1 (ENSCSAG00000012988) #19	GNB4 (ENSCSAG00000012993) #20	ACTL6A (ENSCSAG00000013017) #22	ENSCSAG00000013046 #23	NDUFB5 (ENSCSAG00000013080) #24	USP13 (ENSCSAG00000013094) #25	PEX5L (ENSCSAG00000013101) #26	TTC14 (ENSCSAG00000013105) #28	CCDC39 (ENSCSAG00000013137) #29	ENSCSAG00000013166 #30	FXR1 (ENSCSAG00000013179) #32	DNAJC19 (ENSCSAG00000013183) #33	SOX2 (ENSCSAG00000018883) #35	ATP11B (ENSCSAG00000013201)	DCUN1D1 (ENSCSAG00000013212)	MCCC1 (ENSCSAG00000013226)	ENSCSAG00000013232	B3GNT5 (ENSCSAG00000018882)
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b #9	ENSGT00860000135711.a	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00530000063564.b.e.b #17	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837.m #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00940000154639.n.a #27	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000154942.h.q.b #30	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000147968	ENSGT00910000146924 #36	ENSGT00940000156162.C.k
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b #9	ENSGT00860000135711.a	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156000.o.b	ENSGT00940000156305 #22	ENSGT00390000002837.m #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00940000154639.n.a #27	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000154942.h.q.b #30	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000147968	ENSGT00910000146924 #36	ENSGT00940000156162.C.k
Pig-tailed macaque	MODERN SPECIES	164	ENSMNEG00000007958	NAALADL2 (ENSMNEG00000036084) #9	ENSMNEG00000034366	TBL1XR1 (ENSMNEG00000000982) #11	KCNMB2 (ENSMNEG00000037391) #13	ZMAT3 (ENSMNEG00000036725) #14	PIK3CA (ENSMNEG00000033970) #15	ENSMNEG00000035824	KCNMB3 (ENSMNEG00000029975) #16	ENSMNEG00000044183 #18	MFN1 (ENSMNEG00000040994) #19	ENSMNEG00000010044	GNB4 (ENSMNEG00000028705) #20	ENSMNEG00000036158 #21	ENSMNEG00000036357	ACTL6A (ENSMNEG00000031576) #22	ENSMNEG00000001870 #23	NDUFB5 (ENSMNEG00000000326) #24	ENSMNEG00000041949	USP13 (ENSMNEG00000037002) #25	ENSMNEG00000024585	PEX5L (ENSMNEG00000044236) #26	ENSMNEG00000042272 #27
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000159720.x	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT01100000263493.a.a.a.b.a.a.a.a.a.b.b.a	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156000.o.b	ENSGT00940000156305 #22	ENSGT00390000002837.m #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT01100000263509.a.a.b.b.a.b.a.a.a.a	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000154942.h.q.b #30	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b.g.a	ENSGT00940000156941
Crab-eating macaque	MODERN SPECIES	11	ENSMFAG00000057081	ENSMFAG00000058101	TBL1XR1 (ENSMFAG00000007211) #11	ENSMFAG00000050846	ENSMFAG00000060621	KCNMB2 (ENSMFAG00000037847) #13	ZMAT3 (ENSMFAG00000021292) #14	PIK3CA (ENSMFAG00000045156) #15	KCNMB3 (ENSMFAG00000000185) #16	ZNF639 (ENSMFAG00000002403) #18	MFN1 (ENSMFAG00000003857) #19	GNB4 (ENSMFAG00000041470) #20	ENSMFAG00000030517	ENSMFAG00000065242	ENSMFAG00000054257	ACTL6A (ENSMFAG00000030153) #22	ENSMFAG00000053669 #23	NDUFB5 (ENSMFAG00000042220) #24	USP13 (ENSMFAG00000042834) #25	ENSMFAG00000061892	PEX5L (ENSMFAG00000036976) #26	ENSMFAG00000053927	TTC14 (ENSMFAG00000046249) #28	CCDC39 (ENSMFAG00000002267) #29	FXR1 (ENSMFAG00000040264) #32	DNAJC19 (ENSMFAG00000034041) #33	ENSMFAG00000058781	SOX2 (ENSMFAG00000027781) #35	ENSMFAG00000003633 #36	ATP11B (ENSMFAG00000035388)	MCCC1 (ENSMFAG00000000043)
Rhesus	MODERN SPECIES	11	NLGN1 (ENSMMUG00000004671) #7	ENSMMUG00000059733	NAALADL2 (ENSMMUG00000045509) #9	ENSMMUG00000010630	ENSMMUG00000059662	TBL1XR1 (ENSMMUG00000019597) #11	ENSMMUG00000055098	KCNMB2 (ENSMMUG00000014426) #13	ZMAT3 (ENSMMUG00000003216) #14	PIK3CA (ENSMMUG00000005188) #15	KCNMB3 (ENSMMUG00000005187) #16	ZNF639 (ENSMMUG00000023078) #18	MFN1 (ENSMMUG00000004079) #19	GNB4 (ENSMMUG00000004083) #20	ENSMMUG00000054028	ACTL6A (ENSMMUG00000009742) #22	MRPL47 (ENSMMUG00000009744) #23	NDUFB5 (ENSMMUG00000009746) #24	USP13 (ENSMMUG00000003594) #25	PEX5L (ENSMMUG00000003595) #26	ENSMMUG00000050512	ENSMMUG00000049713	TTC14 (ENSMMUG00000019656) #28	CCDC39 (ENSMMUG00000045200) #29	ENSMMUG00000013353 #30	FXR1 (ENSMMUG00000012105) #32	DNAJC19 (ENSMMUG00000012104) #33	ENSMMUG00000063235	ENSMMUG00000057005	ENSMMUG00000047232 #36	ENSMMUG00000018530
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000155789 #7	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b.d #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00530000063564.b.e.b #17	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837.m #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000154942.h.q.b #30	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000147968	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b.g.a
Olive baboon	MODERN SPECIES	11	ENSPANG00000039756	ENSPANG00000037722	ENSPANG00000046346	ENSPANG00000036979	ENSPANG00000051236	ENSPANG00000036994	KCNMB2 (ENSPANG00000019971) #13	ZMAT3 (ENSPANG00000023167) #14	PIK3CA (ENSPANG00000023166) #15	KCNMB3 (ENSPANG00000023165) #16	ZNF639 (ENSPANG00000024157) #18	MFN1 (ENSPANG00000018156) #19	GNB4 (ENSPANG00000018882) #20	ENSPANG00000010712	ENSPANG00000048993	ACTL6A (ENSPANG00000024431) #22	ENSPANG00000008191 #23	NDUFB5 (ENSPANG00000008899) #24	USP13 (ENSPANG00000008384) #25	PEX5L (ENSPANG00000011898) #26	ENSPANG00000037628	TTC14 (ENSPANG00000011012) #28	CCDC39 (ENSPANG00000018158) #29	ENSPANG00000031815 ##30	ENSPANG00000042364	ENSPANG00000042486 #31	FXR1 (ENSPANG00000011899) #32	DNAJC19 (ENSPANG00000034438) #33	ENSPANG00000040162	ENSPANG00000044238	ENSPANG00000047546
Cercopithecinae_d	ANCESTRAL SPECIES	181			ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b.d #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00530000063564.b.e.b #17	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d #21	ENSGT00940000156305 #22	ENSGT00390000002837.m #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26
Sooty mangabey	MODERN SPECIES	271	DHX29 (ENSCATG00000036778)	MTREX (ENSCATG00000042153)	PLPP1 (ENSCATG00000029450)	ENSCATG00000019413	KCNMB2 (ENSCATG00000044097) #13	ZMAT3 (ENSCATG00000025137) #14	PIK3CA (ENSCATG00000036934) #15	KCNMB3 (ENSCATG00000036734) #16	ENSCATG00000009576 #17	ENSCATG00000036560 #18	MFN1 (ENSCATG00000033458) #19	ENSCATG00000017028	GNB4 (ENSCATG00000008577) #20	ENSCATG00000029330 #21	ENSCATG00000034615	ACTL6A (ENSCATG00000017467) #22	ENSCATG00000029931 #23	NDUFB5 (ENSCATG00000035869) #24	USP13 (ENSCATG00000032951) #25	ENSCATG00000022662	PEX5L (ENSCATG00000005455) #26
Drill	MODERN SPECIES	788			ENSMLEG00000044231	TBL1XR1 (ENSMLEG00000031785) #11	KCNMB2 (ENSMLEG00000037221) #13	ZMAT3 (ENSMLEG00000026279) #14	PIK3CA (ENSMLEG00000034006) #15	ENSMLEG00000025740	KCNMB3 (ENSMLEG00000032189) #16	ENSMLEG00000034189 #17	ENSMLEG00000034855 #18	MFN1 (ENSMLEG00000033980) #19	ENSMLEG00000025437	GNB4 (ENSMLEG00000013416) #20	ENSMLEG00000039833 #21	ACTL6A (ENSMLEG00000034199) #22	ENSMLEG00000035312 #23	NDUFB5 (ENSMLEG00000039784) #24
Platyrrhini	ANCESTRAL SPECIES	43									ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.r #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a.c.b #33	ENSGT00940000156162.C.k	ENSGT00940000154552.b.f	ENSGT00940000156941.j	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676
Cebidae	ANCESTRAL SPECIES	14									ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.r #23	ENSGT00390000002837.q #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a.c.b.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b.f	ENSGT00940000156941.j	ENSGT00950000182899.C.a	ENSGT00940000161734
Cebidae_a	ANCESTRAL SPECIES	14									ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.r #23	ENSGT00390000014814.a.b.a.a.b	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a.c.b.a.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b.f	ENSGT00940000156941.j	ENSGT00950000182899.C.a	ENSGT00940000161734
Capuchin	MODERN SPECIES	353								KCNMB2 (ENSCCAG00000028554) #13	ZMAT3 (ENSCCAG00000036721) #14	ENSCCAG00000037391	PIK3CA (ENSCCAG00000028165) #15	ENSCCAG00000034140 #16	ZNF639 (ENSCCAG00000025690) #18	MFN1 (ENSCCAG00000021450) #19	GNB4 (ENSCCAG00000025823) #20	ACTL6A (ENSCCAG00000029449) #22	MRPL47 (ENSCCAG00000037348) #23	ENSCCAG00000002926	NDUFB5 (ENSCCAG00000022016) #24	USP13 (ENSCCAG00000021400) #25	PEX5L (ENSCCAG00000026024) #26	TTC14 (ENSCCAG00000025759) #28	CCDC39 (ENSCCAG00000021606) #29
Bolivian squirrel monkey	MODERN SPECIES	62									KCNMB2 (ENSSBOG00000024312) #13	ZMAT3 (ENSSBOG00000033332) #14	PIK3CA (ENSSBOG00000020045) #15	KCNMB3 (ENSSBOG00000022343) #16	ZNF639 (ENSSBOG00000025502) #18	MFN1 (ENSSBOG00000034184) #19	GNB4 (ENSSBOG00000029068) #20	ACTL6A (ENSSBOG00000027162) #22	MRPL47 (ENSSBOG00000018241) #23	ENSSBOG00000016971	ENSSBOG00000029840 #24	USP13 (ENSSBOG00000026837) #25	PEX5L (ENSSBOG00000027789) #26	TTC14 (ENSSBOG00000024686) #28	CCDC39 (ENSSBOG00000027250) #29	FXR1 (ENSSBOG00000033567) #32	ENSSBOG00000026921 #33	ATP11B (ENSSBOG00000025969)	DCUN1D1 (ENSSBOG00000028062)	MCCC1 (ENSSBOG00000026219)	ENSSBOG00000021035	MCF2L2 (ENSSBOG00000029425)	KLHL6 (ENSSBOG00000020503)
Marmoset	MODERN SPECIES	6							ENSCJAG00000081774	KCNMB2 (ENSCJAG00000070092) #13	ENSCJAG00000086748	ZMAT3 (ENSCJAG00000013399) #14	PIK3CA (ENSCJAG00000013294) #15	GNB4 (ENSCJAG00000064977) #20	ENSCJAG00000069983 #16	ZNF639 (ENSCJAG00000013246) #18	MFN1 (ENSCJAG00000013155) #19	ACTL6A (ENSCJAG00000013036) #22	ENSCJAG00000013028 #23	NDUFB5 (ENSCJAG00000013015) #24	ENSCJAG00000039957	USP13 (ENSCJAG00000012999) #25	ENSCJAG00000077201	PEX5L (ENSCJAG00000012957) #26	ENSCJAG00000081830	TTC14 (ENSCJAG00000012923) #28	CCDC39 (ENSCJAG00000012901) #29	FXR1 (ENSCJAG00000012802) #32	ENSCJAG00000012795 #33	ENSCJAG00000069793	ENSCJAG00000080211	SOX2 (ENSCJAG00000008401) #35	ENSCJAG00000070332
Mas night monkey	MODERN SPECIES	796									KCNMB2 (ENSANAG00000029970) #13	ZMAT3 (ENSANAG00000035673) #14	PIK3CA (ENSANAG00000027469) #15	KCNMB3 (ENSANAG00000030173) #16	ZNF639 (ENSANAG00000023473) #18	MFN1 (ENSANAG00000032522) #19	GNB4 (ENSANAG00000025913) #20	ACTL6A (ENSANAG00000028039) #22	ENSANAG00000029476 #23	NDUFB5 (ENSANAG00000026829) #24	ENSANAG00000026189 #25	ENSANAG00000024062	ENSANAG00000031235 #26
Tarsier	MODERN SPECIES	1197													ENSTSYG00000036806 #18	MFN1 (ENSTSYG00000002404) #19	GNB4 (ENSTSYG00000030980) #20	ACTL6A (ENSTSYG00000001527) #22	MRPL47 (ENSTSYG00000001541) #23	NDUFB5 (ENSTSYG00000001558) #24	USP13 (ENSTSYG00000009222) #25	ENSTSYG00000027361
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00860000135711	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.p #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00860000135711	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.p #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a.g.a #33	ENSGT00940000160614 #35	ENSGT00910000146924 #36	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941
Lemuriformes_a	ANCESTRAL SPECIES	9	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.p #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a.g.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00950000182899.C.a
Greater bamboo lemur	MODERN SPECIES	819															ENSPSMG00000025607	ACTL6A (ENSPSMG00000025614) #22	MRPL47 (ENSPSMG00000025629) #23	ENSPSMG00000025631	NDUFB5 (ENSPSMG00000025638) #24	USP13 (ENSPSMG00000025659) #25	PEX5L (ENSPSMG00000025666) #26	ENSPSMG00000025669
Coquerels sifaka	MODERN SPECIES	162	RAVER2 (ENSPCOG00000028379)	JAK1 (ENSPCOG00000018189)	ENSPCOG00000025120	DNAJC6 (ENSPCOG00000021196)	LEPROT (ENSPCOG00000027148)	LEPR (ENSPCOG00000017023)	ENSPCOG00000016467	KCNMB2 (ENSPCOG00000021563) #13	ZMAT3 (ENSPCOG00000022835) #14	PIK3CA (ENSPCOG00000019539) #15	KCNMB3 (ENSPCOG00000006968) #16	ZNF639 (ENSPCOG00000025183) #18	MFN1 (ENSPCOG00000018204) #19	GNB4 (ENSPCOG00000023050) #20	ENSPCOG00000023805	ACTL6A (ENSPCOG00000027739) #22	MRPL47 (ENSPCOG00000019367) #23	ENSPCOG00000025389 #24	ENSPCOG00000023588 #24	USP13 (ENSPCOG00000000179) #25	ENSPCOG00000028880	PEX5L (ENSPCOG00000002922) #26	TTC14 (ENSPCOG00000027629) #28	CCDC39 (ENSPCOG00000018971) #29	ENSPCOG00000026996	ENSPCOG00000025037	FXR1 (ENSPCOG00000020057) #32	DNAJC19 (ENSPCOG00000022644) #33
Mouse lemur	MODERN SPECIES		NCEH1 (ENSMICG00000049131)	ECT2 (ENSMICG00000049582)	SPATA16 (ENSMICG00000049271)	NLGN1 (ENSMICG00000049574) #7	NAALADL2 (ENSMICG00000048670) #9	ENSMICG00000048980	TBL1XR1 (ENSMICG00000049448) #11	ENSMICG00000049180	KCNMB2 (ENSMICG00000049491) #13	ZMAT3 (ENSMICG00000049501) #14	PIK3CA (ENSMICG00000049155) #15	KCNMB3 (ENSMICG00000048999) #16	ENSMICG00000048810 #18	MFN1 (ENSMICG00000049257) #19	GNB4 (ENSMICG00000049251) #20	ACTL6A (ENSMICG00000049032) #22	MRPL47 (ENSMICG00000049377) #23	ENSMICG00000049551 #24	USP13 (ENSMICG00000049124) #25	ENSMICG00000049219	PEX5L (ENSMICG00000048938) #26	TTC14 (ENSMICG00000049351) #28	CCDC39 (ENSMICG00000048849) #29	ENSMICG00000049410	ENSMICG00000048978 #32	ENSMICG00000049008 #33	ENSMICG00000049314	ENSMICG00000049506	SOX2 (ENSMICG00000049239) #35	ENSMICG00000048904 #36	ATP11B (ENSMICG00000049475)
Bushbaby	MODERN SPECIES	193	NCEH1 (ENSOGAG00000000976)	ECT2 (ENSOGAG00000003365)	SPATA16 (ENSOGAG00000001358)	NLGN1 (ENSOGAG00000012761) #7	NAALADL2 (ENSOGAG00000005833) #9	TBL1XR1 (ENSOGAG00000006708) #11	ENSOGAG00000034666	KCNMB2 (ENSOGAG00000015737) #13	ZMAT3 (ENSOGAG00000003252) #14	ENSOGAG00000027303	PIK3CA (ENSOGAG00000006592) #15	KCNMB3 (ENSOGAG00000006601) #16	ENSOGAG00000034726 #18	MFN1 (ENSOGAG00000000876) #19	GNB4 (ENSOGAG00000000877) #20	ACTL6A (ENSOGAG00000016951) #22	MRPL47 (ENSOGAG00000016957) #23	NDUFB5 (ENSOGAG00000016966) #24	USP13 (ENSOGAG00000013871) #25	PEX5L (ENSOGAG00000013877) #26	ENSOGAG00000026587	TTC14 (ENSOGAG00000006895) #28	CCDC39 (ENSOGAG00000006897) #29
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941
Tree shrew	MODERN SPECIES	1702																ACTL6A (ENSTBEG00000006118) #22	ENSTBEG00000006657 #23
Glires	ANCESTRAL SPECIES	2	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941
Lagomorpha	ANCESTRAL SPECIES	6	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00550000074917	ENSGT00940000153783.b.b.c.a.b
Rabbit	MODERN SPECIES	5	NLGN1 (ENSOCUG00000009269) #7	ENSOCUG00000032927	NAALADL2 (ENSOCUG00000002042) #9	ENSOCUG00000006064	ENSOCUG00000020904	ENSOCUG00000031291	ENSOCUG00000031152	ENSOCUG00000039529	TBL1XR1 (ENSOCUG00000017078) #11	KCNMB2 (ENSOCUG00000005494) #13	ZMAT3 (ENSOCUG00000004658) #14	PIK3CA (ENSOCUG00000010631) #15	KCNMB3 (ENSOCUG00000010643) #16	MFN1 (ENSOCUG00000000928) #19	GNB4 (ENSOCUG00000000931) #20	ACTL6A (ENSOCUG00000017883) #22	MRPL47 (ENSOCUG00000017886) #23	NDUFB5 (ENSOCUG00000017887) #24	USP13 (ENSOCUG00000006043) #25	ENSOCUG00000039309	PEX5L (ENSOCUG00000006053) #26	TTC14 (ENSOCUG00000000806) #28	CCDC39 (ENSOCUG00000000812) #29	FXR1 (ENSOCUG00000023518) #32	DNAJC19 (ENSOCUG00000014043) #33	ENSOCUG00000035765	ENSOCUG00000031658	ENSOCUG00000028029	ATP11B (ENSOCUG00000012358)	DCUN1D1 (ENSOCUG00000012386)	MCCC1 (ENSOCUG00000012393)
Pika	MODERN SPECIES	1416																ACTL6A (ENSOPRG00000007803) #22	MRPL47 (ENSOPRG00000007831) #23	NDUFB5 (ENSOPRG00000007854) #24
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00950000182899.C.a
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b.f ##33	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00950000182899.C.a
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.a.a.a	ENSGT00940000156941	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000033259	TBL1XR1 (ENSHGLG00000044077) #11	ENSHGLG00000050422	ENSHGLG00000019115	ENSHGLG00000038549	ENSHGLG00000016930	KCNMB2 (ENSHGLG00000041894) #13	ENSHGLG00000011277	ZMAT3 (ENSHGLG00000011523) #14	ENSHGLG00000011894 #15	KCNMB3 (ENSHGLG00000012132) #16	ZNF639 (ENSHGLG00000050776) #18	MFN1 (ENSHGLG00000012515) #19	ENSHGLG00000044219	GNB4 (ENSHGLG00000012880) #20	ACTL6A (ENSHGLG00000013350) #22	MRPL47 (ENSHGLG00000033799) #23	NDUFB5 (ENSHGLG00000014377) #24	USP13 (ENSHGLG00000014472) #25	PEX5L (ENSHGLG00000016946) #26	ENSHGLG00000016952	TTC14 (ENSHGLG00000016959) #28	CCDC39 (ENSHGLG00000016969) #29	ENSHGLG00000039606	FXR1 (ENSHGLG00000018814) #32	ENSHGLG00000014387 #33	ENSHGLG00000050891	ENSHGLG00000032116 #10	SOX2 (ENSHGLG00000046210) #35	ATP11B (ENSHGLG00000014553)	ENSHGLG00000014589
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b.f ##33	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.a.a.a	ENSGT00940000156941	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000170892	ENSGT00940000156941	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263
Degu	DUPLICATION
Degu	MODERN SPECIES	339														MFN1 (ENSODEG00000002887) #19	GNB4 (ENSODEG00000002845) #20	ENSODEG00000002804 #22	ENSODEG00000002762 #23	NDUFB5 (ENSODEG00000002740) #24	ENSODEG00000002050	ENSODEG00000018753	USP13 (ENSODEG00000001943) #25	PEX5L (ENSODEG00000001608) #26	ENSODEG00000001450 #28	CCDC39 (ENSODEG00000001427) #29	ENSODEG00000001368	ENSODEG00000001069 #32	ENSODEG00000000914 ##33
Degu	MODERN SPECIES	71	ENSODEG00000005791	ENSODEG00000005325	KBTBD8 (ENSODEG00000005749)	ENSODEG00000005664	LRIG1 (ENSODEG00000005673)	SLC25A26 (ENSODEG00000006331)	SLC41A3 (ENSODEG00000006800)	ENSODEG00000006480	ENSODEG00000005644	KLF15 (ENSODEG00000005067)	CFAP100 (ENSODEG00000006308)	ZXDC (ENSODEG00000006787)	ENSODEG00000019268	UROC1 (ENSODEG00000006472)	CHST13 (ENSODEG00000006099)	ENSODEG00000005156 #22	ENSODEG00000007573	KCNJ3 (ENSODEG00000005298)	GALNT13 (ENSODEG00000004968)	RPRM (ENSODEG00000019321)
Long-tailed chinchilla	MODERN SPECIES	127	NCEH1 (ENSCLAG00000011865)	ENSCLAG00000013454	ECT2 (ENSCLAG00000015030)	SPATA16 (ENSCLAG00000016484)	NLGN1 (ENSCLAG00000010604) #7	NAALADL2 (ENSCLAG00000012428) #9	ENSCLAG00000018045	TBL1XR1 (ENSCLAG00000013893) #11	KCNMB2 (ENSCLAG00000014319) #13	ZMAT3 (ENSCLAG00000013464) #14	PIK3CA (ENSCLAG00000015135) #15	KCNMB3 (ENSCLAG00000014741) #16	ZNF639 (ENSCLAG00000011168) #18	MFN1 (ENSCLAG00000015912) #19	GNB4 (ENSCLAG00000015522) #20	ACTL6A (ENSCLAG00000012251) #22	ENSCLAG00000015039 #23	ENSCLAG00000014903 #24	USP13 (ENSCLAG00000015308) #25	PEX5L (ENSCLAG00000014042) #26	TTC14 (ENSCLAG00000013302) #28	CCDC39 (ENSCLAG00000012683) #29	FXR1 (ENSCLAG00000014182) #32	DNAJC19 (ENSCLAG00000011246) #33	SOX2 (ENSCLAG00000017978) #35	ATP11B (ENSCLAG00000012551)	ENSCLAG00000014207	MCCC1 (ENSCLAG00000014174)	LMLN (ENSCLAG00000011520)	ENSCLAG00000012348	IQCG (ENSCLAG00000013851)
Guinea pig	MODERN SPECIES	47	ENSCPOG00000024974	ENSCPOG00000024155	NCEH1 (ENSCPOG00000033460)	ECT2 (ENSCPOG00000004744)	SPATA16 (ENSCPOG00000006395)	NLGN1 (ENSCPOG00000005752) #7	NAALADL2 (ENSCPOG00000013413) #9	TBL1XR1 (ENSCPOG00000005472) #11	KCNMB2 (ENSCPOG00000013955) #13	ZMAT3 (ENSCPOG00000003865) #14	PIK3CA (ENSCPOG00000006574) #15	KCNMB3 (ENSCPOG00000025991) #16	ZNF639 (ENSCPOG00000039664) #18	MFN1 (ENSCPOG00000033188) #19	GNB4 (ENSCPOG00000034790) #20	ACTL6A (ENSCPOG00000025370) #22	ENSCPOG00000002312 #23	NDUFB5 (ENSCPOG00000036110) #24	USP13 (ENSCPOG00000002315) #25	PEX5L (ENSCPOG00000002319) #26	TTC14 (ENSCPOG00000015311) #28	CCDC39 (ENSCPOG00000015314) #29	FXR1 (ENSCPOG00000010418) #32	ENSCPOG00000021198 ##33	SPTLC1 (ENSCPOG00000015106)	ROR2 (ENSCPOG00000021707)	AUH (ENSCPOG00000001066)	SYK (ENSCPOG00000010410)
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.k #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00950000182899.C.a
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	1	SPATA16 (ENSSVLG00005008419)	NLGN1 (ENSSVLG00005008366) #7	ENSSVLG00005008340	NAALADL2 (ENSSVLG00005008257) #9	TBL1XR1 (ENSSVLG00005008184) #11	ENSSVLG00005008160	KCNMB2 (ENSSVLG00005008096) #13	ENSSVLG00005008059	ZMAT3 (ENSSVLG00005008037) #14	PIK3CA (ENSSVLG00005007992) #15	KCNMB3 (ENSSVLG00005007870) #16	ENSSVLG00005007822	ENSSVLG00005007788 #18	MFN1 (ENSSVLG00005007726) #19	GNB4 (ENSSVLG00005007689) #20	ENSSVLG00005007595 #22	MRPL47 (ENSSVLG00005007505) #23	ENSSVLG00005007458 #24	USP13 (ENSSVLG00005007303) #25	ENSSVLG00005007236	PEX5L (ENSSVLG00005006552) #26	ENSSVLG00005006293	TTC14 (ENSSVLG00005006262) #28	CCDC39 (ENSSVLG00005006018) #29	ENSSVLG00005005952	FXR1 (ENSSVLG00005005627) #32	ENSSVLG00005005504 ##33	SOX2 (ENSSVLG00005005486) #35	ENSSVLG00005005467	ATP11B (ENSSVLG00005005419)	DCUN1D1 (ENSSVLG00005005371)
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005014167	ENSSVLG00005014346	ENSSVLG00005014416	ENSSVLG00005014453	ENSSVLG00005014497	ENSSVLG00005014517	ENSSVLG00005014539	ENSSVLG00005014578	ENSSVLG00005014632	ENSSVLG00005014679	ENSSVLG00005014732	ENSSVLG00005014776	ENSSVLG00005014856	OR8B8 (ENSSVLG00005014922)	ENSSVLG00005014945	ENSSVLG00005014960 #22	OR8B12 (ENSSVLG00005015073)	OR8A1 (ENSSVLG00005015091)	PANX3 (ENSSVLG00005015110)	TBRG1 (ENSSVLG00005015166)	SIAE (ENSSVLG00005015262)	SPA17 (ENSSVLG00005015480)	NRGN (ENSSVLG00005015507)	VSIG2 (ENSSVLG00005015545)	ESAM (ENSSVLG00005015674)	MSANTD2 (ENSSVLG00005015771)	ENSSVLG00005015859	ENSSVLG00005015882	ENSSVLG00005015942	ROBO4 (ENSSVLG00005016212)	HEPACAM (ENSSVLG00005016550)
Marmotini	ANCESTRAL SPECIES	59	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.k #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00950000182899.C.a
Alpin marmot	MODERN SPECIES	37	SPATA16 (ENSMMMG00000004708)	NLGN1 (ENSMMMG00000004664) #7	ENSMMMG00000004633	ENSMMMG00000004628	NAALADL2 (ENSMMMG00000004611) #9	ENSMMMG00000004587	ENSMMMG00000004514 #11	KCNMB2 (ENSMMMG00000004486) #13	ZMAT3 (ENSMMMG00000004454) #14	PIK3CA (ENSMMMG00000004387) #15	ENSMMMG00000004373	KCNMB3 (ENSMMMG00000004362) #16	ENSMMMG00000004333 #18	MFN1 (ENSMMMG00000004267) #19	GNB4 (ENSMMMG00000004203) #20	ACTL6A (ENSMMMG00000004175) #22	MRPL47 (ENSMMMG00000004133) #23	ENSMMMG00000004120	NDUFB5 (ENSMMMG00000004098) #24	USP13 (ENSMMMG00000004025) #25	PEX5L (ENSMMMG00000003637) #26	ENSMMMG00000003599	ENSMMMG00000003524 #28	ENSMMMG00000003512 #28	CCDC39 (ENSMMMG00000003487) #29	ENSMMMG00000003471	FXR1 (ENSMMMG00000003158) #32	ENSMMMG00000003137 ##33	ENSMMMG00000003124	SOX2 (ENSMMMG00000003111) #35	ENSMMMG00000003075
Marmotini_b	ANCESTRAL SPECIES	149	ENSGT00940000156299.t	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00910000147422	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000015224.c.b.b.a.a	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.k #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676
Squirrel	MODERN SPECIES	166							TBL1XR1 (ENSSTOG00000014252) #11	KCNMB2 (ENSSTOG00000002726) #13	ZMAT3 (ENSSTOG00000028436) #14	PIK3CA (ENSSTOG00000012906) #15	KCNMB3 (ENSSTOG00000013715) #16	ZNF639 (ENSSTOG00000001442) #18	MFN1 (ENSSTOG00000005167) #19	GNB4 (ENSSTOG00000005210) #20	ENSSTOG00000033903	ACTL6A (ENSSTOG00000010540) #22	MRPL47 (ENSSTOG00000032487) #23	NDUFB5 (ENSSTOG00000010557) #24	USP13 (ENSSTOG00000002367) #25	PEX5L (ENSSTOG00000002383) #26	TTC14 (ENSSTOG00000003827) #28	ENSSTOG00000003847 #29	ENSSTOG00000011392	FXR1 (ENSSTOG00000010612) #32	ENSSTOG00000011508 ##33	SOX2 (ENSSTOG00000011011) #35	ATP11B (ENSSTOG00000016462)	DCUN1D1 (ENSSTOG00000016465)	MCCC1 (ENSSTOG00000010361)	ENSSTOG00000010372	B3GNT5 (ENSSTOG00000010399)
Arctic ground squirrel	MODERN SPECIES	22	SPATA16 (ENSUPAG00010022746)	NLGN1 (ENSUPAG00010022744) #7	NAALADL2 (ENSUPAG00010022740) #9	ENSUPAG00010022737	TBL1XR1 (ENSUPAG00010022733) #11	KCNMB2 (ENSUPAG00010022732) #13	ZMAT3 (ENSUPAG00010022730) #14	PIK3CA (ENSUPAG00010022723) #15	ENSUPAG00010022722	KCNMB3 (ENSUPAG00010022719) #16	ENSUPAG00010022718	ZNF639 (ENSUPAG00010022715) #18	MFN1 (ENSUPAG00010022711) #19	GNB4 (ENSUPAG00010022702) #20	ENSUPAG00010022699	ACTL6A (ENSUPAG00010022696) #22	MRPL47 (ENSUPAG00010022693) #23	NDUFB5 (ENSUPAG00010022690) #24	USP13 (ENSUPAG00010022684) #25	PEX5L (ENSUPAG00010022611) #26	TTC14 (ENSUPAG00010022594) #28	CCDC39 (ENSUPAG00010022590) #29	ENSUPAG00010022589	FXR1 (ENSUPAG00010022534) #32	ENSUPAG00010022530 ##33	ATP11B (ENSUPAG00010022507)	DCUN1D1 (ENSUPAG00010022504)	MCCC1 (ENSUPAG00010022499)	ENSUPAG00010022496	ENSUPAG00010022491	ENSUPAG00010022487
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000164015	ENSGT00950000182899.C.a
Kangaroo rat	MODERN SPECIES	493													Zfp639 (ENSDORG00000004733) #18	Mfn1 (ENSDORG00000016388) #19	Gnb4 (ENSDORG00000015363) #20	Actl6a (ENSDORG00000007648) #22	Mrpl47 (ENSDORG00000007650) #23	Ndufb5 (ENSDORG00000007651) #24	ENSDORG00000001060	Usp13 (ENSDORG00000013004) #25	Pex5l (ENSDORG00000013007) #26	Ttc14 (ENSDORG00000002727) #28	Ccdc39 (ENSDORG00000002728) #29	Fxr1 (ENSDORG00000005853) #32	ENSDORG00000005862 #33
Myomorpha	ANCESTRAL SPECIES	38	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000153661.b.b
Muroidea	ANCESTRAL SPECIES	83									ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000153661.b.b
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00730000111293	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000160075	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.g.a #28	ENSGT00390000013701.g.b #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00940000160075	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.g.a #28	ENSGT00390000013701.g.b #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000153661.a.a	ENSGT00940000157312
Chinese hamster chok1gshd	MODERN SPECIES	352	Samd7 (ENSCGRG00001019079)	Lrriq4 (ENSCGRG00001016290)	Lrrc34 (ENSCGRG00001011347)	Mynn (ENSCGRG00001011074)	Actrt3 (ENSCGRG00001000653)	ENSCGRG00001010291	Mecom (ENSCGRG00001011582)	Egfem1 (ENSCGRG00001021334)	Kcnmb2 (ENSCGRG00001009106) #13	Zmat3 (ENSCGRG00001012339) #14	Pik3ca (ENSCGRG00001019897) #15	Kcnmb3 (ENSCGRG00001008742) #16	ENSCGRG00001021748 #18	ENSCGRG00001022585 #19	Gnb4 (ENSCGRG00001021439) #20	Actl6a (ENSCGRG00001013395) #22	Mrpl47 (ENSCGRG00001015111) #23	Ndufb5 (ENSCGRG00001005505) #24	Usp13 (ENSCGRG00001017123) #25	Pex5l (ENSCGRG00001018482) #26	Ttc14 (ENSCGRG00001021605) #28	Ccdc39 (ENSCGRG00001018347) #29	Fxr1 (ENSCGRG00001024795) #32	ENSCGRG00001000090 #33	Sox2 (ENSCGRG00001008732) #35	Atp11b (ENSCGRG00001021308)	ENSCGRG00001013592	ENSCGRG00001019778	Mccc1 (ENSCGRG00001012469)	ENSCGRG00001017668	Acad9 (ENSCGRG00001017444)
Golden Hamster	MODERN SPECIES	636	Gpr160 (ENSMAUG00000009648)	Sec62 (ENSMAUG00000011713)	Lrriq4 (ENSMAUG00000017468)	Lrrc34 (ENSMAUG00000011698)	Mynn (ENSMAUG00000018740)	Actrt3 (ENSMAUG00000014894)	ENSMAUG00000017495	Mecom (ENSMAUG00000017146)	Egfem1 (ENSMAUG00000012184)	Kcnmb2 (ENSMAUG00000006173) #13	Zmat3 (ENSMAUG00000001986) #14	Pik3ca (ENSMAUG00000019874) #15	Kcnmb3 (ENSMAUG00000005213) #16	Mfn1 (ENSMAUG00000010778) #19	Gnb4 (ENSMAUG00000011589) #20	ENSMAUG00000018855 #22	Mrpl47 (ENSMAUG00000010772) #23	Ndufb5 (ENSMAUG00000017888) #24	Usp13 (ENSMAUG00000008996) #25	Pex5l (ENSMAUG00000011108) #26	ENSMAUG00000009258 #28	ENSMAUG00000000140 #28	Ccdc39 (ENSMAUG00000009369) #29	Fxr1 (ENSMAUG00000001188) #32	ENSMAUG00000011285 #33	Sox2 (ENSMAUG00000017052) #35	Atp11b (ENSMAUG00000000325)	ENSMAUG00000018021	ENSMAUG00000019275	Mccc1 (ENSMAUG00000018926)	ENSMAUG00000000987
Cricetidae_B	ANCESTRAL SPECIES	55	ENSGT00940000160075	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.g.a #28	ENSGT00390000013701.g.b #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000153661.b.b
Prairie vole	MODERN SPECIES		Lrriq4 (ENSMOCG00000004550)	ENSMOCG00000005957	Lrrc34 (ENSMOCG00000016121)	Mynn (ENSMOCG00000015696)	Actrt3 (ENSMOCG00000015666)	ENSMOCG00000020206	Mecom (ENSMOCG00000021596)	Egfem1 (ENSMOCG00000018732)	Kcnmb2 (ENSMOCG00000017078) #13	Zmat3 (ENSMOCG00000018844) #14	Pik3ca (ENSMOCG00000013980) #15	Kcnmb3 (ENSMOCG00000016804) #16	Zfp639 (ENSMOCG00000020301) #18	Mfn1 (ENSMOCG00000019248) #19	Gnb4 (ENSMOCG00000015281) #20	Actl6a (ENSMOCG00000014148) #22	ENSMOCG00000007933 #23	ENSMOCG00000019293 #24	Usp13 (ENSMOCG00000015377) #25	Pex5l (ENSMOCG00000014372) #26	ENSMOCG00000020574 #28	ENSMOCG00000012924 #28	Ccdc39 (ENSMOCG00000018440) #29	Fxr1 (ENSMOCG00000017707) #32	Dnajc19 (ENSMOCG00000004841) ##33	Sox2 (ENSMOCG00000008169) #35	ENSMOCG00000011558	Atp11b (ENSMOCG00000013153)	ENSMOCG00000005771	Mccc1 (ENSMOCG00000003671)	ENSMOCG00000009970
Northern American deer mouse	MODERN SPECIES	19	Lrrc34 (ENSPEMG00000002888)	Mynn (ENSPEMG00000000610)	Actrt3 (ENSPEMG00000018524)	ENSPEMG00000013723	Mecom (ENSPEMG00000013270)	ENSPEMG00000029688	Egfem1 (ENSPEMG00000008460)	Kcnmb2 (ENSPEMG00000000476) #13	ENSPEMG00000026565	Zmat3 (ENSPEMG00000019154) #14	Pik3ca (ENSPEMG00000018399) #15	Kcnmb3 (ENSPEMG00000015081) #16	Zfp639 (ENSPEMG00000011611) #18	Mfn1 (ENSPEMG00000010348) #19	Gnb4 (ENSPEMG00000028778) #20	Actl6a (ENSPEMG00000015742) #22	Mrpl47 (ENSPEMG00000026294) #23	Ndufb5 (ENSPEMG00000018635) #24	Usp13 (ENSPEMG00000001021) #25	Pex5l (ENSPEMG00000006300) #26	Ttc14 (ENSPEMG00000013671) #28	Ccdc39 (ENSPEMG00000017829) #29	Fxr1 (ENSPEMG00000012962) #32	ENSPEMG00000006887 #33	ENSPEMG00000026113	Sox2 (ENSPEMG00000013974) #35	ENSPEMG00000024881	Atp11b (ENSPEMG00000001656)	ENSPEMG00000018868	Mccc1 (ENSPEMG00000014164)	ENSPEMG00000011597
Murinae	ANCESTRAL SPECIES	5	ENSGT00730000111293	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C
Mus	ANCESTRAL SPECIES	7	ENSGT00940000160075	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000160075	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000160075	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C
Mouse	MODERN SPECIES	12	Samd7 (ENSMUSG00000051860)	Sec62 (ENSMUSG00000027706)	Gpr160 (ENSMUSG00000037661)	Phc3 (ENSMUSG00000037652)	Prkci (ENSMUSG00000037643)	Skil (ENSMUSG00000027660)	Cldn11 (ENSMUSG00000037625)	Slc7a14 (ENSMUSG00000069072)	Kcnmb2 (ENSMUSG00000037610) #13	Zmat3 (ENSMUSG00000027663) #14	Pik3ca (ENSMUSG00000027665) #15	Kcnmb3 (ENSMUSG00000091091) #16	Zfp639 (ENSMUSG00000027667) #18	Mfn1 (ENSMUSG00000027668) #19	Gnb4 (ENSMUSG00000027669) #20	Actl6a (ENSMUSG00000027671) #22	Mrpl47 (ENSMUSG00000037531) #23	Ndufb5 (ENSMUSG00000027673) #24	Usp13 (ENSMUSG00000056900) #25	Pex5l (ENSMUSG00000027674) #26	Ttc14 (ENSMUSG00000027677) #28	Ccdc39 (ENSMUSG00000027676) #29	Fxr1 (ENSMUSG00000027680) #32	Dnajc19 (ENSMUSG00000027679) ##33	Sox2 (ENSMUSG00000074637) #35	Atp11b (ENSMUSG00000037400)	Dcun1d1 (ENSMUSG00000027708)	Mccc1 (ENSMUSG00000027709)	Ccdc144b (ENSMUSG00000047696)	Acad9 (ENSMUSG00000027710)	Zfp267 (ENSMUSG00000033883)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000160075	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b.f ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552.b	ENSGT00940000156941	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C
spretus	MODERN SPECIES	12	Samd7 (MGP_SPRETEiJ_G0025839)	Sec62 (MGP_SPRETEiJ_G0025840)	Gpr160 (MGP_SPRETEiJ_G0025841)	Phc3 (MGP_SPRETEiJ_G0025842)	Prkci (MGP_SPRETEiJ_G0025843)	Skil (MGP_SPRETEiJ_G0025844)	Cldn11 (MGP_SPRETEiJ_G0025845)	Slc7a14 (MGP_SPRETEiJ_G0025846)	Kcnmb2 (MGP_SPRETEiJ_G0025847) #13	Zmat3 (MGP_SPRETEiJ_G0025848) #14	Pik3ca (MGP_SPRETEiJ_G0025849) #15	Kcnmb3 (MGP_SPRETEiJ_G0025850) #16	Zfp639 (MGP_SPRETEiJ_G0025851) #18	Mfn1 (MGP_SPRETEiJ_G0025852) #19	Gnb4 (MGP_SPRETEiJ_G0025853) #20	Actl6a (MGP_SPRETEiJ_G0025854) #22	Mrpl47 (MGP_SPRETEiJ_G0025855) #23	Ndufb5 (MGP_SPRETEiJ_G0025856) #24	Usp13 (MGP_SPRETEiJ_G0025857) #25	Pex5l (MGP_SPRETEiJ_G0025858) #26	Ttc14 (MGP_SPRETEiJ_G0025859) #28	Ccdc39 (MGP_SPRETEiJ_G0025860) #29	Fxr1 (MGP_SPRETEiJ_G0025861) #32	Dnajc19 (MGP_SPRETEiJ_G0025862) ##33	Sox2 (MGP_SPRETEiJ_G0025863) #35	Atp11b (MGP_SPRETEiJ_G0025864)	MGP_SPRETEiJ_G0025865	Mccc1 (MGP_SPRETEiJ_G0025866)	MGP_SPRETEiJ_G0025867	Acad9 (MGP_SPRETEiJ_G0025868)	Zfp267 (MGP_SPRETEiJ_G0025869)
Steppe mouse	MODERN SPECIES	2721											ENSMSIG00000031669 #15	Kcnmb3 (ENSMSIG00000031664) #16	Zfp639 (ENSMSIG00000031663) #18	Mfn1 (ENSMSIG00000031656) #19	Gnb4 (ENSMSIG00000031655) #20	Actl6a (ENSMSIG00000031649) #22	ENSMSIG00000031644 #23	ENSMSIG00000031643	Ndufb5 (ENSMSIG00000031641) #24	Usp13 (ENSMSIG00000031514) #25	ENSMSIG00000031504	Pex5l (ENSMSIG00000031307) #26
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0024905	Sec62 (MGP_CAROLIEiJ_G0024906)	Gpr160 (MGP_CAROLIEiJ_G0024907)	Phc3 (MGP_CAROLIEiJ_G0024908)	Prkci (MGP_CAROLIEiJ_G0024909)	Skil (MGP_CAROLIEiJ_G0024910)	Cldn11 (MGP_CAROLIEiJ_G0024911)	Slc7a14 (MGP_CAROLIEiJ_G0024912)	Kcnmb2 (MGP_CAROLIEiJ_G0024913) #13	Zmat3 (MGP_CAROLIEiJ_G0024914) #14	Pik3ca (MGP_CAROLIEiJ_G0024915) #15	Kcnmb3 (MGP_CAROLIEiJ_G0024916) #16	Zfp639 (MGP_CAROLIEiJ_G0024917) #18	MGP_CAROLIEiJ_G0024918 #19	Gnb4 (MGP_CAROLIEiJ_G0024919) #20	Actl6a (MGP_CAROLIEiJ_G0024920) #22	Mrpl47 (MGP_CAROLIEiJ_G0024921) #23	Ndufb5 (MGP_CAROLIEiJ_G0024922) #24	Usp13 (MGP_CAROLIEiJ_G0024923) #25	Pex5l (MGP_CAROLIEiJ_G0024924) #26	Ttc14 (MGP_CAROLIEiJ_G0024925) #28	Ccdc39 (MGP_CAROLIEiJ_G0024926) #29	Fxr1 (MGP_CAROLIEiJ_G0024927) #32	MGP_CAROLIEiJ_G0024928 ##33	Sox2 (MGP_CAROLIEiJ_G0024929) #35	Atp11b (MGP_CAROLIEiJ_G0024930)	MGP_CAROLIEiJ_G0024931	Mccc1 (MGP_CAROLIEiJ_G0024932)	MGP_CAROLIEiJ_G0024933	MGP_CAROLIEiJ_G0024934	Zfp267 (MGP_CAROLIEiJ_G0024935)
Shrew mouse	MODERN SPECIES	17	Samd7 (MGP_PahariEiJ_G0026350)	Sec62 (MGP_PahariEiJ_G0026351)	Gpr160 (MGP_PahariEiJ_G0026352)	Phc3 (MGP_PahariEiJ_G0026353)	Prkci (MGP_PahariEiJ_G0026354)	Skil (MGP_PahariEiJ_G0026355)	Cldn11 (MGP_PahariEiJ_G0026356)	Slc7a14 (MGP_PahariEiJ_G0026357)	Kcnmb2 (MGP_PahariEiJ_G0026358) #13	Zmat3 (MGP_PahariEiJ_G0026359) #14	Pik3ca (MGP_PahariEiJ_G0026360) #15	Kcnmb3 (MGP_PahariEiJ_G0026361) #16	Zfp639 (MGP_PahariEiJ_G0026362) #18	Mfn1 (MGP_PahariEiJ_G0026363) #19	Gnb4 (MGP_PahariEiJ_G0026364) #20	Actl6a (MGP_PahariEiJ_G0026365) #22	Mrpl47 (MGP_PahariEiJ_G0026366) #23	Ndufb5 (MGP_PahariEiJ_G0026367) #24	Usp13 (MGP_PahariEiJ_G0026368) #25	Pex5l (MGP_PahariEiJ_G0026369) #26	MGP_PahariEiJ_G0026370 #28	Fxr1 (MGP_PahariEiJ_G0026371) #32	Dnajc19 (MGP_PahariEiJ_G0026372) ##33	Sox2 (MGP_PahariEiJ_G0026373) #35	MGP_PahariEiJ_G0026374	Zfp267 (MGP_PahariEiJ_G0026375)	Qrfpr (MGP_PahariEiJ_G0026376)	Anxa5 (MGP_PahariEiJ_G0026377)	MGP_PahariEiJ_G0026378	Exosc9 (MGP_PahariEiJ_G0026379)	Ccna2 (MGP_PahariEiJ_G0026380)
Rat	MODERN SPECIES	11	Samd7 (ENSRNOG00000027995)	Lrrc31 (ENSRNOG00000027971)	Lrriq4 (ENSRNOG00000009004)	Lrrc34 (ENSRNOG00000027935)	Mynn (ENSRNOG00000027923)	Actrt3 (ENSRNOG00000027908)	Mecom (ENSRNOG00000012645)	Egfem1 (ENSRNOG00000023908)	Kcnmb2 (ENSRNOG00000010094) #13	Zmat3 (ENSRNOG00000063864) #14	Pik3ca (ENSRNOG00000056371) #15	Kcnmb3 (ENSRNOG00000027836) #16	Zfp639 (ENSRNOG00000043053) #18	Mfn1 (ENSRNOG00000011057) #19	Gnb4 (ENSRNOG00000011070) #20	Actl6a (ENSRNOG00000011553) #22	Mrpl47 (ENSRNOG00000011639) #23	Ndufb5 (ENSRNOG00000011949) #24	Usp13 (ENSRNOG00000030639) #25	Pex5l (ENSRNOG00000011211) #26	Ttc14 (ENSRNOG00000011261) #28	Ccdc39 (ENSRNOG00000011440) #29	Fxr1 (ENSRNOG00000051480) #32	Dnajc19 (ENSRNOG00000049819) ##33	Sox2 (ENSRNOG00000012199) #35	Atp11b (ENSRNOG00000052116)	Dcun1d1 (ENSRNOG00000012734)	Mccc1 (ENSRNOG00000013293)	Ccdc144b (ENSRNOG00000056177)	ENSRNOG00000065565	Acad9 (ENSRNOG00000014178)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1036									Kcnmb2 (ENSNGAG00000023449) #13	Zmat3 (ENSNGAG00000023602) #14	Pik3ca (ENSNGAG00000011770) #15	Kcnmb3 (ENSNGAG00000023104) #16	Zfp639 (ENSNGAG00000017433) #18	Mfn1 (ENSNGAG00000022452) #19	Gnb4 (ENSNGAG00000023855) #20	Actl6a (ENSNGAG00000023000) #22	Mrpl47 (ENSNGAG00000022354) #23	Ndufb5 (ENSNGAG00000019121) #24	Usp13 (ENSNGAG00000008457) #25	Pex5l (ENSNGAG00000021052) #26	Ttc14 (ENSNGAG00000019537) #28	Ccdc39 (ENSNGAG00000023870) #29	Fxr1 (ENSNGAG00000021726) #32	ENSNGAG00000012574 #33
Lesser Egyptian jerboa	MODERN SPECIES	47	ENSJJAG00000023375	Ghsr (ENSJJAG00000022390)	Nceh1 (ENSJJAG00000023562)	Ect2 (ENSJJAG00000001186)	Spata16 (ENSJJAG00000021398)	Nlgn1 (ENSJJAG00000018596) #7	Naaladl2 (ENSJJAG00000001804) #9	ENSJJAG00000012112 #11	Kcnmb2 (ENSJJAG00000021914) #13	Zmat3 (ENSJJAG00000004288) #14	Pik3ca (ENSJJAG00000021453) #15	Kcnmb3 (ENSJJAG00000023050) #16	ENSJJAG00000024013 #18	Mfn1 (ENSJJAG00000019731) #19	ENSJJAG00000023681 #20	Actl6a (ENSJJAG00000017810) #22	Mrpl47 (ENSJJAG00000020002) #23	Ndufb5 (ENSJJAG00000012502) #24	Usp13 (ENSJJAG00000018696) #25	Pex5l (ENSJJAG00000000620) #26	ENSJJAG00000023040 #28	Ccdc39 (ENSJJAG00000016989) #29	Fxr1 (ENSJJAG00000019175) #32	ENSJJAG00000015744 #33	Sox2 (ENSJJAG00000002483) #35	Atp11b (ENSJJAG00000018460)	ENSJJAG00000019826	Mccc1 (ENSJJAG00000003543)	ENSJJAG00000016856	Ptpdc1 (ENSJJAG00000015386)	Barx1 (ENSJJAG00000012954)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Suina	ANCESTRAL SPECIES	1	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00940000164015	ENSGT00940000161734
Chacoan peccary	MODERN SPECIES	944	TNFSF10 (ENSCWAG00000012722)	NCEH1 (ENSCWAG00000012786)	ECT2 (ENSCWAG00000012868)	SPATA16 (ENSCWAG00000013214)	NLGN1 (ENSCWAG00000013308) #7	NAALADL2 (ENSCWAG00000013390) #9	TBL1XR1 (ENSCWAG00000013528) #11	ENSCWAG00000013558	KCNMB2 (ENSCWAG00000013602) #13	ZMAT3 (ENSCWAG00000013667) #14	PIK3CA (ENSCWAG00000013715) #15	KCNMB3 (ENSCWAG00000013862) #16	ZNF639 (ENSCWAG00000014049) #18	MFN1 (ENSCWAG00000014074) #19	GNB4 (ENSCWAG00000014110) #20	ACTL6A (ENSCWAG00000014148) #22	MRPL47 (ENSCWAG00000014208) #23	ENSCWAG00000014342	ENSCWAG00000014364 #24	USP13 (ENSCWAG00000014441) #25	ENSCWAG00000014493	PEX5L (ENSCWAG00000014594) #26	TTC14 (ENSCWAG00000018170) #28	CCDC39 (ENSCWAG00000018221) #29	FXR1 (ENSCWAG00000010854) #32	DNAJC19 (ENSCWAG00000011201) ##33	SOX2 (ENSCWAG00000011284) #35	ENSCWAG00000011322	ATP11B (ENSCWAG00000011359)	DCUN1D1 (ENSCWAG00000011613)	MCCC1 (ENSCWAG00000011692)
Pig	MODERN SPECIES	4	ENSSSCG00000062281	ENSSSCG00000011758	ENSSSCG00000044757	NAALADL2 (ENSSSCG00000023871) #9	TBL1XR1 (ENSSSCG00000011760) #11	ENSSSCG00000043076	ENSSSCG00000047877	KCNMB2 (ENSSSCG00000011761) #13	ZMAT3 (ENSSSCG00000033860) #14	PIK3CA (ENSSSCG00000030413) #15	KCNMB3 (ENSSSCG00000029240) #16	ENSSSCG00000031922	ZNF639 (ENSSSCG00000038443) #18	MFN1 (ENSSSCG00000039285) #19	GNB4 (ENSSSCG00000037583) #20	ACTL6A (ENSSSCG00000011762) #22	MRPL47 (ENSSSCG00000011763) #23	NDUFB5 (ENSSSCG00000011764) #24	USP13 (ENSSSCG00000011765) #25	PEX5L (ENSSSCG00000011766) #26	TTC14 (ENSSSCG00000011767) #28	CCDC39 (ENSSSCG00000011768) #29	FXR1 (ENSSSCG00000011769) #32	DNAJC19 (ENSSSCG00000011770) #33	ENSSSCG00000043321	ENSSSCG00000052379	SOX2 (ENSSSCG00000062993) #35	ENSSSCG00000062332	ENSSSCG00000061239	ENSSSCG00000055503	ATP11B (ENSSSCG00000011772)
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000164015
Cetacea	ANCESTRAL SPECIES	10	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT01030000239371	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335.a #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT01030000239371	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00960000192355	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335.a #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000161734
Sperm whale	MODERN SPECIES		NCEH1 (ENSPCTG00005002205)	ECT2 (ENSPCTG00005002261)	SPATA16 (ENSPCTG00005002355)	NLGN1 (ENSPCTG00005002376) #7	NAALADL2 (ENSPCTG00005002399) #9	ENSPCTG00005002425	ENSPCTG00005002436	TBL1XR1 (ENSPCTG00005002457) #11	KCNMB2 (ENSPCTG00005002495) #13	ENSPCTG00005002512	ZMAT3 (ENSPCTG00005002527) #14	PIK3CA (ENSPCTG00005002544) #15	ZNF639 (ENSPCTG00005002565) #18	MFN1 (ENSPCTG00005002577) #19	GNB4 (ENSPCTG00005002602) #20	ACTL6A (ENSPCTG00005002626) #22	MRPL47 (ENSPCTG00005002655) #23	NDUFB5 (ENSPCTG00005002691) #24	USP13 (ENSPCTG00005002736) #25	PEX5L (ENSPCTG00005002908) #26	ENSPCTG00005003697	ENSPCTG00005003702	TTC14 (ENSPCTG00005003714) #28	CCDC39 (ENSPCTG00005003737) #29	FXR1 (ENSPCTG00005003785) #32	ENSPCTG00005003919 ##33	SOX2 (ENSPCTG00005003937) #35	ENSPCTG00005003941	ENSPCTG00005003956	ATP11B (ENSPCTG00005004005)	ENSPCTG00005005564
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00960000192355	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000161734
Dolphin	MODERN SPECIES	494																ACTL6A (ENSTTRG00000008907) #22	MRPL47 (ENSTTRG00000008909) #23	NDUFB5 (ENSTTRG00000008910) #24	USP13 (ENSTTRG00000008911) #25	PEX5L (ENSTTRG00000008912) #26
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00960000192355	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000155453.k.b	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00390000018829.g.b.c.a.a	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00390000001413.d	ENSGT00990000211790
Monodontidae	ANCESTRAL SPECIES	23	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT00390000006503.a.l	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00960000192355	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00510000046985.h.a.jd	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000155453.k.b	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33
Narwhal	MODERN SPECIES	297	NLGN1 (ENSMMNG00015002410) #7	ENSMMNG00015002378	NAALADL2 (ENSMMNG00015002350) #9	ENSMMNG00015002332	TBL1XR1 (ENSMMNG00015002265) #11	ENSMMNG00015002145	KCNMB2 (ENSMMNG00015002126) #13	ENSMMNG00015002111	ZMAT3 (ENSMMNG00015002091) #14	PIK3CA (ENSMMNG00015002009) #15	ENSMMNG00015001952	ENSMMNG00015001936 #18	MFN1 (ENSMMNG00015001899) #19	GNB4 (ENSMMNG00015001871) #20	ENSMMNG00015001853	ACTL6A (ENSMMNG00015001826) #22	MRPL47 (ENSMMNG00015001795) #23	ENSMMNG00015001756 #24	USP13 (ENSMMNG00015001699) #25	PEX5L (ENSMMNG00015001374) #26	TTC14 (ENSMMNG00015001171) #28	CCDC39 (ENSMMNG00015001064) #29	FXR1 (ENSMMNG00015000882) #32	ENSMMNG00015000810 ##33	ENSMMNG00015000787	SOX2 (ENSMMNG00015000779) #35	ENSMMNG00015000768	ATP11B (ENSMMNG00015000694)	ENSMMNG00015000676	DCUN1D1 (ENSMMNG00015000639)	ENSMMNG00015000610
Beluga whale	MODERN SPECIES	111	SPATA16 (ENSDLEG00000014859)	NLGN1 (ENSDLEG00000014852) #7	ENSDLEG00000014835	NAALADL2 (ENSDLEG00000014814) #9	ENSDLEG00000014801	TBL1XR1 (ENSDLEG00000014786) #11	KCNMB2 (ENSDLEG00000014764) #13	ENSDLEG00000014756	ZMAT3 (ENSDLEG00000014744) #14	PIK3CA (ENSDLEG00000014721) #15	ENSDLEG00000014709	ZNF639 (ENSDLEG00000014693) #18	MFN1 (ENSDLEG00000014635) #19	GNB4 (ENSDLEG00000014597) #20	ENSDLEG00000014581	ACTL6A (ENSDLEG00000014465) #22	MRPL47 (ENSDLEG00000014407) #23	ENSDLEG00000014388 #24	USP13 (ENSDLEG00000014351) #25	PEX5L (ENSDLEG00000012327) #26	TTC14 (ENSDLEG00000012062) #28	CCDC39 (ENSDLEG00000011994) #29	ENSDLEG00000011974	FXR1 (ENSDLEG00000011932) #32	ENSDLEG00000011911 ##33	ENSDLEG00000011882	SOX2 (ENSDLEG00000011877) #35	ENSDLEG00000011867	ATP11B (ENSDLEG00000011729)	ENSDLEG00000011713	DCUN1D1 (ENSDLEG00000011699)
Vaquita	MODERN SPECIES	15	ENSPSNG00000004415	NAALADL2 (ENSPSNG00000004440) #9	ENSPSNG00000004485	ENSPSNG00000004503	ENSPSNG00000004516	TBL1XR1 (ENSPSNG00000004528) #11	KCNMB2 (ENSPSNG00000000137) #13	ENSPSNG00000000161	ZMAT3 (ENSPSNG00000000179) #14	ENSPSNG00000000193	PIK3CA (ENSPSNG00000000243) #15	ENSPSNG00000000310	ZNF639 (ENSPSNG00000000337) #18	MFN1 (ENSPSNG00000000400) #19	GNB4 (ENSPSNG00000000439) #20	ACTL6A (ENSPSNG00000000482) #22	ENSPSNG00000000504	MRPL47 (ENSPSNG00000000528) #23	NDUFB5 (ENSPSNG00000000597) #24	USP13 (ENSPSNG00000000641) #25	PEX5L (ENSPSNG00000000991) #26	ENSPSNG00000001427	TTC14 (ENSPSNG00000001461) #28	CCDC39 (ENSPSNG00000001552) #29	ENSPSNG00000001620	FXR1 (ENSPSNG00000001732) #32	ENSPSNG00000001824 ##33	SOX2 (ENSPSNG00000001850) #35	ENSPSNG00000001868	ENSPSNG00000001895	ENSPSNG00000001911
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	15	ENSBMSG00010003587	ZMAT3 (ENSBMSG00010003591) #14	FZD5 (ENSBMSG00010003645)	ENSBMSG00010003648	PLEKHM3 (ENSBMSG00010003654)	ENSBMSG00010003667	CRYGD (ENSBMSG00010003676)	CRYGC (ENSBMSG00010003687)	ENSBMSG00010003697	CRYGB (ENSBMSG00010003704)	CRYGA (ENSBMSG00010003714)	ENSBMSG00010003722	ZNF639 (ENSBMSG00010003730) #18	MFN1 (ENSBMSG00010003738) #19	GNB4 (ENSBMSG00010003748) #20	ENSBMSG00010003758 #22	MRPL47 (ENSBMSG00010003775) #23	NDUFB5 (ENSBMSG00010003799) #24	USP13 (ENSBMSG00010003825) #25	ENSBMSG00010003863	PEX5L (ENSBMSG00010003978) #26	TTC14 (ENSBMSG00010004833) #28	CCDC39 (ENSBMSG00010004860) #29	ENSBMSG00010004914 #32	ENSBMSG00010004956 ##33	SOX2 (ENSBMSG00010004972) #35	ATP11B (ENSBMSG00010006023)	DCUN1D1 (ENSBMSG00010006245)	ENSBMSG00010006269	ENSBMSG00010006280	MCCC1 (ENSBMSG00010006304)
Blue whale	MODERN SPECIES	2	SIRT5 (ENSBMSG00010008270)	NOL7 (ENSBMSG00010008285)	RANBP9 (ENSBMSG00010008301)	MCUR1 (ENSBMSG00010008331)	RNF182 (ENSBMSG00010008347)	ENSBMSG00010008353	ENSBMSG00010008364	ENSBMSG00010008373	JARID2 (ENSBMSG00010008385)	DTNBP1 (ENSBMSG00010008422)	ENSBMSG00010008488	MYLIP (ENSBMSG00010008495)	GMPR (ENSBMSG00010008446)	ATXN1 (ENSBMSG00010008456)	STMND1 (ENSBMSG00010008487)	ENSBMSG00010008501 #22	RBM24 (ENSBMSG00010008527)	CAP2 (ENSBMSG00010008605)	FAM8A1 (ENSBMSG00010008915)	NUP153 (ENSBMSG00010008959)	KIF13A (ENSBMSG00010009044)	NHLRC1 (ENSBMSG00010009156)	ENSBMSG00010009160	TPMT (ENSBMSG00010009170)	KDM1B (ENSBMSG00010009201)	DEK (ENSBMSG00010009290)	RNF144B (ENSBMSG00010009325)	ENSBMSG00010009341	ENSBMSG00010009344	ID4 (ENSBMSG00010009351)	MBOAT1 (ENSBMSG00010009363)
Pecora	ANCESTRAL SPECIES	8	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676
Yarkand deer	MODERN SPECIES	10	ENSCHYG00000004463	ENSCHYG00000022159	NLGN1 (ENSCHYG00000022086) #7	NAALADL2 (ENSCHYG00000021681) #9	ENSCHYG00000021620	ENSCHYG00000021600	TBL1XR1 (ENSCHYG00000021350) #11	ENSCHYG00000021293	KCNMB2 (ENSCHYG00000021244) #13	ZMAT3 (ENSCHYG00000021162) #14	PIK3CA (ENSCHYG00000020926) #15	ENSCHYG00000020552 #16	ZNF639 (ENSCHYG00000020480) #18	MFN1 (ENSCHYG00000020157) #19	GNB4 (ENSCHYG00000020053) #20	ACTL6A (ENSCHYG00000019950) #22	MRPL47 (ENSCHYG00000019750) #23	NDUFB5 (ENSCHYG00000019479) #24	USP13 (ENSCHYG00000018967) #25	PEX5L (ENSCHYG00000017068) #26	ENSCHYG00000016977	TTC14 (ENSCHYG00000016786) #28	CCDC39 (ENSCHYG00000016666) #29	FXR1 (ENSCHYG00000015742) #32	DNAJC19 (ENSCHYG00000015489) ##33	ATP11B (ENSCHYG00000013977)	ENSCHYG00000013883	DCUN1D1 (ENSCHYG00000013798)	ENSCHYG00000013773	MCCC1 (ENSCHYG00000013336)	LAMP3 (ENSCHYG00000013102)
Percora_a	ANCESTRAL SPECIES	7	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676
Siberian musk deer	MODERN SPECIES	139	SPATA16 (ENSMMSG00000003744)	ENSMMSG00000003725	ENSMMSG00000003711	NLGN1 (ENSMMSG00000003692) #7	ENSMMSG00000003679	NAALADL2 (ENSMMSG00000003624) #9	TBL1XR1 (ENSMMSG00000003575) #11	KCNMB2 (ENSMMSG00000003557) #13	ENSMMSG00000003544	ZMAT3 (ENSMMSG00000003531) #14	PIK3CA (ENSMMSG00000003505) #15	KCNMB3 (ENSMMSG00000003476) #16	ZNF639 (ENSMMSG00000003462) #18	MFN1 (ENSMMSG00000003440) #19	GNB4 (ENSMMSG00000003419) #20	ACTL6A (ENSMMSG00000003389) #22	MRPL47 (ENSMMSG00000003361) #23	NDUFB5 (ENSMMSG00000003341) #24	USP13 (ENSMMSG00000003298) #25	PEX5L (ENSMMSG00000001803) #26	TTC14 (ENSMMSG00000001675) #28	CCDC39 (ENSMMSG00000001595) #29	ENSMMSG00000001203 #32	ENSMMSG00000001124 ##33	ENSMMSG00000001107	SOX2 (ENSMMSG00000001102) #35	ATP11B (ENSMMSG00000000997)	DCUN1D1 (ENSMMSG00000000928)	MCCC1 (ENSMMSG00000000836)	ENSMMSG00000000791	B3GNT5 (ENSMMSG00000000777)
Bovidae	ANCESTRAL SPECIES	9	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676
Bovinae	ANCESTRAL SPECIES	6	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000153525.g.b.a.n
Bos	ANCESTRAL SPECIES	7	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.f #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734
Bos_a	ANCESTRAL SPECIES	5	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.f #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734
Wild yak	MODERN SPECIES	495								KCNMB2 (ENSBMUG00000016601) #13	ZMAT3 (ENSBMUG00000016617) #14	PIK3CA (ENSBMUG00000016649) #15	ENSBMUG00000016675 #16	ENSBMUG00000016679	ZNF639 (ENSBMUG00000016692) #18	MFN1 (ENSBMUG00000016720) #19	GNB4 (ENSBMUG00000016733) #20	ACTL6A (ENSBMUG00000016746) #22	MRPL47 (ENSBMUG00000016765) #23	NDUFB5 (ENSBMUG00000016813) #24	USP13 (ENSBMUG00000016857) #25	PEX5L (ENSBMUG00000017113) #26	TTC14 (ENSBMUG00000017289) #28	CCDC39 (ENSBMUG00000017317) #29	FXR1 (ENSBMUG00000017444) #32	ENSBMUG00000017548 ##33	ENSBMUG00000017572	ATP11B (ENSBMUG00000017711)	DCUN1D1 (ENSBMUG00000017739)	MCCC1 (ENSBMUG00000017803)	ENSBMUG00000017850	MCF2L2 (ENSBMUG00000017904)	ENSBMUG00000017918
Domestic yak	MODERN SPECIES		ENSBGRG00000003486	NLGN1 (ENSBGRG00000003457) #7	ENSBGRG00000003453	ENSBGRG00000003433	NAALADL2 (ENSBGRG00000003389) #9	TBL1XR1 (ENSBGRG00000003307) #11	ENSBGRG00000003290	KCNMB2 (ENSBGRG00000003278) #13	ZMAT3 (ENSBGRG00000003264) #14	PIK3CA (ENSBGRG00000003231) #15	ENSBGRG00000003201 #16	ENSBGRG00000003193	ENSBGRG00000003185	MFN1 (ENSBGRG00000003142) #19	GNB4 (ENSBGRG00000003113) #20	ACTL6A (ENSBGRG00000003086) #22	MRPL47 (ENSBGRG00000003051) #23	NDUFB5 (ENSBGRG00000003013) #24	USP13 (ENSBGRG00000002861) #25	ENSBGRG00000002451 #26	TTC14 (ENSBGRG00000002327) #28	CCDC39 (ENSBGRG00000002146) #29	FXR1 (ENSBGRG00000001900) #32	DNAJC19 (ENSBGRG00000001844) ##33	ATP11B (ENSBGRG00000001781)	DCUN1D1 (ENSBGRG00000001763)	MCCC1 (ENSBGRG00000001725)	ENSBGRG00000001692	B3GNT5 (ENSBGRG00000001683)	ENSBGRG00000001679	MCF2L2 (ENSBGRG00000001502)
Bos_b	ANCESTRAL SPECIES	5	ENSGT00940000161884.d	ENSGT00940000155789 #7	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.f #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734
Hybrid Bos Indicus	MODERN SPECIES		ENSBIXG00005016905	ENSBIXG00005016911	NAALADL2 (ENSBIXG00005002757) #9	TBL1XR1 (ENSBIXG00005002780) #11	ENSBIXG00005006866	ENSBIXG00005002798	KCNMB2 (ENSBIXG00005017216) #13	ZMAT3 (ENSBIXG00005017242) #14	ENSBIXG00005017249	PIK3CA (ENSBIXG00005017279) #15	KCNMB3 (ENSBIXG00005002817) #16	ZNF639 (ENSBIXG00005017422) #18	ENSBIXG00005017430	MFN1 (ENSBIXG00005007801) #19	GNB4 (ENSBIXG00005017563) #20	ACTL6A (ENSBIXG00005017648) #22	MRPL47 (ENSBIXG00005017737) #23	NDUFB5 (ENSBIXG00005017808) #24	ENSBIXG00005017824	USP13 (ENSBIXG00005017875) #25	PEX5L (ENSBIXG00005018250) #26	TTC14 (ENSBIXG00005018361) #28	CCDC39 (ENSBIXG00005018434) #29	ENSBIXG00005018457	FXR1 (ENSBIXG00005000056) #32	ENSBIXG00005003104 ##33	ATP11B (ENSBIXG00005003151)	DCUN1D1 (ENSBIXG00005019545)	MCCC1 (ENSBIXG00005019762)	ENSBIXG00005019865	B3GNT5 (ENSBIXG00005019925)
Cow	MODERN SPECIES		TBL1XR1 (ENSBTAG00000021910) #11	ENSBTAG00000048417	ENSBTAG00000052803	GTPBP6 (ENSBTAG00000054315)	PLCXD1 (ENSBTAG00000035144)	ENSBTAG00000050181	KCNMB2 (ENSBTAG00000011377) #13	ZMAT3 (ENSBTAG00000012463) #14	ENSBTAG00000054655	PIK3CA (ENSBTAG00000009232) #15	KCNMB3 (ENSBTAG00000009235) #16	ZNF639 (ENSBTAG00000037393) #18	ENSBTAG00000050978	MFN1 (ENSBTAG00000010485) #19	GNB4 (ENSBTAG00000002767) #20	ACTL6A (ENSBTAG00000002460) #22	MRPL47 (ENSBTAG00000002462) #23	NDUFB5 (ENSBTAG00000002463) #24	USP13 (ENSBTAG00000005946) #25	PEX5L (ENSBTAG00000013219) #26	TTC14 (ENSBTAG00000001968) #28	CCDC39 (ENSBTAG00000001969) #29	FXR1 (ENSBTAG00000016457) #32	DNAJC19 (ENSBTAG00000023513) ##33	ATP11B (ENSBTAG00000000290)	DCUN1D1 (ENSBTAG00000012797)	MCCC1 (ENSBTAG00000006548)	LAMP3 (ENSBTAG00000006552)	B3GNT5 (ENSBTAG00000010397)	ENSBTAG00000032217	MCF2L2 (ENSBTAG00000010394)
American bison	MODERN SPECIES	3281									KCNMB2 (ENSBBBG00000016906) #13	ZMAT3 (ENSBBBG00000016883) #14	PIK3CA (ENSBBBG00000016857) #15	KCNMB3 (ENSBBBG00000016801) #16	ZNF639 (ENSBBBG00000016766) #18	MFN1 (ENSBBBG00000016746) #19	GNB4 (ENSBBBG00000000725) #20	ACTL6A (ENSBBBG00000004132) #22	MRPL47 (ENSBBBG00000016656) #23	NDUFB5 (ENSBBBG00000016629) #24	USP13 (ENSBBBG00000016615) #25	PEX5L (ENSBBBG00000016549) #26	TTC14 (ENSBBBG00000016091) #28	CCDC39 (ENSBBBG00000016047) #29	FXR1 (ENSBBBG00000016010) #32	ENSBBBG00000015808 ##33	SOX2 (ENSBBBG00000015767) #35	ATP11B (ENSBBBG00000015744)	DCUN1D1 (ENSBBBG00000002643)	MCCC1 (ENSBBBG00000015686)	LAMP3 (ENSBBBG00000003901)	MCF2L2 (ENSBBBG00000003450)	B3GNT5 (ENSBBBG00000007365)
Caprinae	ANCESTRAL SPECIES	8	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000161884.d	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000173300	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a
Rambouillet Sheep	MODERN SPECIES		ECT2 (ENSOARG00020000567)	SPATA16 (ENSOARG00020000484)	ENSOARG00020000457	NLGN1 (ENSOARG00020000438) #7	NAALADL2 (ENSOARG00020000356) #9	ENSOARG00020000331	TBL1XR1 (ENSOARG00020000203) #11	ENSOARG00020000133	KCNMB2 (ENSOARG00020000078) #13	ZMAT3 (ENSOARG00020000075) #14	PIK3CA (ENSOARG00020010030) #15	ENSOARG00020009952 #16	ZNF639 (ENSOARG00020009893) #18	MFN1 (ENSOARG00020009679) #19	GNB4 (ENSOARG00020009587) #20	ACTL6A (ENSOARG00020009394) #22	MRPL47 (ENSOARG00020009272) #23	NDUFB5 (ENSOARG00020009071) #24	USP13 (ENSOARG00020008860) #25	PEX5L (ENSOARG00020007531) #26	CCDC39 (ENSOARG00020006964) #29	TTC14 (ENSOARG00020006723) #28	FXR1 (ENSOARG00020005863) #32	DNAJC19 (ENSOARG00020005775) ##33	SOX2 (ENSOARG00020005758) #35	ENSOARG00020005742	ATP11B (ENSOARG00020005548)	DCUN1D1 (ENSOARG00020005500)	MCCC1 (ENSOARG00020005367)	ENSOARG00020005267	B3GNT5 (ENSOARG00020005246)
Goat	MODERN SPECIES		NCEH1 (ENSCHIG00000024248)	ECT2 (ENSCHIG00000025581)	ENSCHIG00000013430	SPATA16 (ENSCHIG00000023395)	ENSCHIG00000009834	NLGN1 (ENSCHIG00000026919) #7	NAALADL2 (ENSCHIG00000018744) #9	TBL1XR1 (ENSCHIG00000010626) #11	KCNMB2 (ENSCHIG00000020065) #13	ZMAT3 (ENSCHIG00000025074) #14	PIK3CA (ENSCHIG00000016154) #15	KCNMB3 (ENSCHIG00000021624) #16	ZNF639 (ENSCHIG00000025519) #18	MFN1 (ENSCHIG00000021326) #19	GNB4 (ENSCHIG00000011036) #20	ACTL6A (ENSCHIG00000017016) #22	MRPL47 (ENSCHIG00000013922) #23	NDUFB5 (ENSCHIG00000024994) #24	USP13 (ENSCHIG00000020163) #25	ENSCHIG00000017176	PEX5L (ENSCHIG00000021885) #26	TTC14 (ENSCHIG00000013993) #28	CCDC39 (ENSCHIG00000025334) #29	ENSCHIG00000002251	ENSCHIG00000025304	FXR1 (ENSCHIG00000017202) #32	ENSCHIG00000022989 ##33	SOX2 (ENSCHIG00000011126) #35	ENSCHIG00000018528	ENSCHIG00000026896	ATP11B (ENSCHIG00000006700)
Camelidae	ANCESTRAL SPECIES		ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.g ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Arabian camel	MODERN SPECIES		SPATA16 (ENSCDRG00005000021)	NLGN1 (ENSCDRG00005000025) #7	ENSCDRG00005000026	NAALADL2 (ENSCDRG00005000032) #9	ENSCDRG00005000048	TBL1XR1 (ENSCDRG00005000072) #11	KCNMB2 (ENSCDRG00005000101) #13	ENSCDRG00005000141	ZMAT3 (ENSCDRG00005000152) #14	PIK3CA (ENSCDRG00005000192) #15	ENSCDRG00005000278	ENSCDRG00005000287 #16	ZNF639 (ENSCDRG00005000309) #18	MFN1 (ENSCDRG00005000323) #19	GNB4 (ENSCDRG00005000360) #20	ACTL6A (ENSCDRG00005000384) #22	ENSCDRG00005000409	MRPL47 (ENSCDRG00005000428) #23	NDUFB5 (ENSCDRG00005000451) #24	USP13 (ENSCDRG00005000482) #25	ENSCDRG00005000524	PEX5L (ENSCDRG00005000654) #26	TTC14 (ENSCDRG00005001332) #28	CCDC39 (ENSCDRG00005001364) #29	FXR1 (ENSCDRG00005001445) #32	DNAJC19 (ENSCDRG00005001633) ##33	ENSCDRG00005001671	ENSCDRG00005001685	ATP11B (ENSCDRG00005001739)	DCUN1D1 (ENSCDRG00005001947)	MCCC1 (ENSCDRG00005001977)
Alpaca	MODERN SPECIES	2024										ZMAT3 (ENSVPAG00000006611) #14	PIK3CA (ENSVPAG00000006612) #15	KCNMB3 (ENSVPAG00000006613) #16	ZNF639 (ENSVPAG00000006614) #18	MFN1 (ENSVPAG00000006617) #19	GNB4 (ENSVPAG00000006622) #20	ACTL6A (ENSVPAG00000006628) #22	MRPL47 (ENSVPAG00000006633) #23	NDUFB5 (ENSVPAG00000006634) #24	USP13 (ENSVPAG00000006636) #25	PEX5L (ENSVPAG00000006638) #26
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Carnivora	ANCESTRAL SPECIES	10	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000164959	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00940000164015
Caniformia	ANCESTRAL SPECIES		ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00960000193213	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000164959	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00940000164015
Caniformia_b	ANCESTRAL SPECIES		ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.z #24	ENSGT00940000157401 #25	ENSGT00960000193213	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000164959	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00940000164015
Ursidae	ANCESTRAL SPECIES	1	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000154268.e.a.jb.b	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000185097.a	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.z #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00940000164015	ENSGT00940000159676	ENSGT00990000203899
Ursus	ANCESTRAL SPECIES	22	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000154268.e.a.jb.b	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000185097.a	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.z #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00940000164015	ENSGT00940000159676	ENSGT00990000203899
American black bear	MODERN SPECIES	614													ZNF639 (ENSUAMG00000007616) #18	MFN1 (ENSUAMG00000007614) #19	GNB4 (ENSUAMG00000007570) #20	ACTL6A (ENSUAMG00000007566) #22	MRPL47 (ENSUAMG00000007563) #23
Polar bear	MODERN SPECIES	270	SPATA16 (ENSUMAG00000008006)	ENSUMAG00000007969	NLGN1 (ENSUMAG00000007957) #7	NAALADL2 (ENSUMAG00000007923) #9	ENSUMAG00000007910	ENSUMAG00000007898	TBL1XR1 (ENSUMAG00000007886) #11	ENSUMAG00000007876	KCNMB2 (ENSUMAG00000007875) #13	ZMAT3 (ENSUMAG00000007847) #14	PIK3CA (ENSUMAG00000007616) #15	KCNMB3 (ENSUMAG00000007593) #16	ZNF639 (ENSUMAG00000007588) #18	MFN1 (ENSUMAG00000007570) #19	GNB4 (ENSUMAG00000007558) #20	ACTL6A (ENSUMAG00000007556) #22	MRPL47 (ENSUMAG00000007554) #23	NDUFB5 (ENSUMAG00000007550) #24	USP13 (ENSUMAG00000007534) #25	PEX5L (ENSUMAG00000007206) #26	ENSUMAG00000007106 #28	ENSUMAG00000007101 #28	CCDC39 (ENSUMAG00000007079) #29	FXR1 (ENSUMAG00000007061) #32	ENSUMAG00000007051 #33	SOX2 (ENSUMAG00000007022) #35	ATP11B (ENSUMAG00000006982)	DCUN1D1 (ENSUMAG00000006934)	MCCC1 (ENSUMAG00000006927)	LAMP3 (ENSUMAG00000006918)	B3GNT5 (ENSUMAG00000006915)
Giant Panda	MODERN SPECIES		ECT2 (ENSAMEG00000001035)	SPATA16 (ENSAMEG00000001100)	NLGN1 (ENSAMEG00000001461) #7	NAALADL2 (ENSAMEG00000010705) #9	ENSAMEG00000029929	ENSAMEG00000031369	TBL1XR1 (ENSAMEG00000010711) #11	ENSAMEG00000028254	KCNMB2 (ENSAMEG00000010737) #13	ZMAT3 (ENSAMEG00000010742) #14	PIK3CA (ENSAMEG00000010753) #15	KCNMB3 (ENSAMEG00000010807) #16	ZNF639 (ENSAMEG00000010809) #18	MFN1 (ENSAMEG00000010816) #19	GNB4 (ENSAMEG00000010842) #20	ACTL6A (ENSAMEG00000010856) #22	MRPL47 (ENSAMEG00000010876) #23	NDUFB5 (ENSAMEG00000023963) #24	USP13 (ENSAMEG00000010896) #25	PEX5L (ENSAMEG00000010981) #26	TTC14 (ENSAMEG00000011013) #28	CCDC39 (ENSAMEG00000011032) #29	FXR1 (ENSAMEG00000012185) #32	ENSAMEG00000029101	Sox2 (ENSAMEG00000011029) #35	ATP11B (ENSAMEG00000015884)	DCUN1D1 (ENSAMEG00000015937)	MCCC1 (ENSAMEG00000015967)	LAMP3 (ENSAMEG00000015997)	B3GNT5 (ENSAMEG00000019887)	KLHL6 (ENSAMEG00000017427)
Mustelinae	ANCESTRAL SPECIES	20	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.z #24	ENSGT00940000157401 #25	ENSGT00960000193213	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000154502.`b.b.b	ENSGT00940000160614 #35	ENSGT00940000164959	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941
Ferret	MODERN SPECIES	216	SPATA16 (ENSMPUG00000017177)	ENSMPUG00000017179 #7	ENSMPUG00000017180 #7	ENSMPUG00000018916	ENSMPUG00000017193	NAALADL2 (ENSMPUG00000017199) #9	ENSMPUG00000017200	TBL1XR1 (ENSMPUG00000017202) #11	KCNMB2 (ENSMPUG00000017205) #13	ZMAT3 (ENSMPUG00000017206) #14	PIK3CA (ENSMPUG00000017207) #15	KCNMB3 (ENSMPUG00000017208) #16	ZNF639 (ENSMPUG00000017209) #18	MFN1 (ENSMPUG00000017210) #19	GNB4 (ENSMPUG00000017211) #20	ACTL6A (ENSMPUG00000017212) #22	MRPL47 (ENSMPUG00000017214) #23	NDUFB5 (ENSMPUG00000017216) #24	USP13 (ENSMPUG00000017217) #25	PEX5L (ENSMPUG00000017218) #26
American mink	MODERN SPECIES	118										ZMAT3 (ENSNVIG00000018146) #14	PIK3CA (ENSNVIG00000018130) #15	KCNMB3 (ENSNVIG00000018086) #16	ZNF639 (ENSNVIG00000018071) #18	MFN1 (ENSNVIG00000018002) #19	GNB4 (ENSNVIG00000017705) #20	ACTL6A (ENSNVIG00000017593) #22	MRPL47 (ENSNVIG00000017553) #23	NDUFB5 (ENSNVIG00000017522) #24	USP13 (ENSNVIG00000017445) #25	ENSNVIG00000017429	E9PH97 (ENSNVIG00000016959) #26	TTC14 (ENSNVIG00000016897) #28	CCDC39 (ENSNVIG00000016850) #29	FXR1 (ENSNVIG00000016628) #32	ENSNVIG00000016582 #33	ENSNVIG00000016571	SOX2 (ENSNVIG00000016538) #35	ENSNVIG00000016527	ATP11B (ENSNVIG00000016435)	DCUN1D1 (ENSNVIG00000016385)	MCCA (ENSNVIG00000016260)
Canidae	ANCESTRAL SPECIES	43										ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.w #24	ENSGT00940000157401 #25	ENSGT00960000193213	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000164959	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a
Canis_lupus	ANCESTRAL SPECIES	41										ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.w #24	ENSGT00940000157401 #25	ENSGT00960000193213	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Dingo	MODERN SPECIES	159	CCDC127 (ENSCAFG00020023080)	ENSCAFG00020023082	LRRC14B (ENSCAFG00020023084)	PLEKHG4B (ENSCAFG00020023087)	ENSCAFG00020023098	ENSCAFG00020023100	ENSCAFG00020023101	ENSCAFG00020023104	ENSCAFG00020023106	ZMAT3 (ENSCAFG00020023107) #14	PIK3CA (ENSCAFG00020023109) #15	KCNMB3 (ENSCAFG00020023112) #16	ZNF639 (ENSCAFG00020023113) #18	MFN1 (ENSCAFG00020023114) #19	GNB4 (ENSCAFG00020023115) #20	ACTL6A (ENSCAFG00020023126) #22	MRPL47 (ENSCAFG00020023127) #23	ENSCAFG00020023129 #24	ENSCAFG00020023130	ENSCAFG00020023131	USP13 (ENSCAFG00020023133) #25	ENSCAFG00020023137	PEX5L (ENSCAFG00020023148) #26	TTC14 (ENSCAFG00020023505) #28	CCDC39 (ENSCAFG00020023514) #29	FXR1 (ENSCAFG00020023527) #32	ENSCAFG00020023532 #33	SOX2 (ENSCAFG00020023541) #35	ENSCAFG00020023545	ATP11B (ENSCAFG00020000213)	DCUN1D1 (ENSCAFG00020000986)
Dog	MODERN SPECIES	27	AHRR (ENSCAFG00845014897)	PDCD6 (ENSCAFG00845014967)	SDHA (ENSCAFG00845015100)	CCDC127 (ENSCAFG00845015192)	ENSCAFG00845015223	LRRC14B (ENSCAFG00845015253)	ENSCAFG00845015302	ENSCAFG00845015451	ENSCAFG00845015500	ENSCAFG00845015527 #14	PIK3CA (ENSCAFG00845015587) #15	KCNMB3 (ENSCAFG00845015706) #16	ZNF639 (ENSCAFG00845015781) #18	MFN1 (ENSCAFG00845015841) #19	GNB4 (ENSCAFG00845016005) #20	ACTL6A (ENSCAFG00845016262) #22	MRPL47 (ENSCAFG00845016380) #23	NDUFB5 (ENSCAFG00845016589) #24	USP13 (ENSCAFG00845016860) #25	PEX5L (ENSCAFG00845017545) #26	TTC14 (ENSCAFG00845018663) #28	CCDC39 (ENSCAFG00845018860) #29	FXR1 (ENSCAFG00845019374) #32	DNAJC19 (ENSCAFG00845020070) #33	ATP11B (ENSCAFG00845020449)	DCUN1D1 (ENSCAFG00845021251)	MCCC1 (ENSCAFG00845021386)	ENSCAFG00845021628	MCF2L2 (ENSCAFG00845021833)	KLHL6 (ENSCAFG00845022563)	ENSCAFG00845022671
Red fox	MODERN SPECIES	63										ZMAT3 (ENSVVUG00000004729) #14	PIK3CA (ENSVVUG00000004738) #15	KCNMB3 (ENSVVUG00000004756) #16	ZNF639 (ENSVVUG00000004762) #18	MFN1 (ENSVVUG00000004780) #19	GNB4 (ENSVVUG00000004802) #20	ACTL6A (ENSVVUG00000004812) #22	MRPL47 (ENSVVUG00000004837) #23	NDUFB5 (ENSVVUG00000004849) #24	USP13 (ENSVVUG00000004881) #25	PEX5L (ENSVVUG00000004951) #26	TTC14 (ENSVVUG00000006305) #28	CCDC39 (ENSVVUG00000006637) #29	ENSVVUG00000006654	FXR1 (ENSVVUG00000006660) #32	DNAJC19 (ENSVVUG00000006684) #33	ENSVVUG00000006699	ENSVVUG00000006706	SOX2 (ENSVVUG00000006730) #35	ENSVVUG00000006736	ATP11B (ENSVVUG00000006763)	DCUN1D1 (ENSVVUG00000006826)
Felidae	ANCESTRAL SPECIES	9	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000172992	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000164959	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941
Panthera	ANCESTRAL SPECIES	12	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000172992	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000164959	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941
Panthera_a	ANCESTRAL SPECIES	17	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789 #7	ENSGT00940000158200	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00950000182802.B.a.a.a.b.a.b	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00940000172992	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000164959	ENSGT00940000156162.C.k	ENSGT00940000154552
leopard	MODERN SPECIES	41	NLGN1 (ENSPPRG00000009803) #7	ENSPPRG00000009449	NAALADL2 (ENSPPRG00000008765) #9	ENSPPRG00000008440	ENSPPRG00000008283	ENSPPRG00000014311	TBL1XR1 (ENSPPRG00000007211) #11	KCNMB2 (ENSPPRG00000005379) #13	ZMAT3 (ENSPPRG00000004407) #14	PIK3CA (ENSPPRG00000003667) #15	KCNMB3 (ENSPPRG00000003525) #16	ZNF639 (ENSPPRG00000002569) #18	MFN1 (ENSPPRG00000001517) #19	GNB4 (ENSPPRG00000001295) #20	ENSPPRG00000022425	ACTL6A (ENSPPRG00000000310) #22	MRPL47 (ENSPPRG00000000050) #23	ENSPPRG00000022339	NDUFB5 (ENSPPRG00000023717) #24	USP13 (ENSPPRG00000023982) #25	ENSPPRG00000022239	PEX5L (ENSPPRG00000012577) #26	ENSPPRG00000006521	TTC14 (ENSPPRG00000006127) #28	CCDC39 (ENSPPRG00000005599) #29	ENSPPRG00000005376	FXR1 (ENSPPRG00000004943) #32	DNAJC19 (ENSPPRG00000002612) #33	SOX2 (ENSPPRG00000021752) #35	ENSPPRG00000002170	ENSPPRG00000001643
lion	MODERN SPECIES	9	ECT2 (ENSPLOG00000013475)	SPATA16 (ENSPLOG00000013657)	NLGN1 (ENSPLOG00000013747) #7	ENSPLOG00000013820	NAALADL2 (ENSPLOG00000013868) #9	ENSPLOG00000014025	TBL1XR1 (ENSPLOG00000014076) #11	ENSPLOG00000014169	KCNMB2 (ENSPLOG00000014199) #13	ZMAT3 (ENSPLOG00000014350) #14	PIK3CA (ENSPLOG00000014416) #15	KCNMB3 (ENSPLOG00000014563) #16	ZNF639 (ENSPLOG00000014743) #18	MFN1 (ENSPLOG00000014785) #19	GNB4 (ENSPLOG00000014871) #20	ACTL6A (ENSPLOG00000014922) #22	MRPL47 (ENSPLOG00000015006) #23	ENSPLOG00000015221	NDUFB5 (ENSPLOG00000015246) #24	USP13 (ENSPLOG00000015359) #25	PEX5L (ENSPLOG00000015604) #26	TTC14 (ENSPLOG00000016608) #28	CCDC39 (ENSPLOG00000016889) #29	ENSPLOG00000017262 #32	DNAJC19 (ENSPLOG00000017942) #33	SOX2 (ENSPLOG00000018057) #35	ENSPLOG00000018071	ATP11B (ENSPLOG00000018137)	DCUN1D1 (ENSPLOG00000018397)	MCCC1 (ENSPLOG00000018464)	LAMP3 (ENSPLOG00000018830)
Tiger	MODERN SPECIES	474								KCNMB2 (ENSPTIG00000009985) #13	ZMAT3 (ENSPTIG00000009929) #14	PIK3CA (ENSPTIG00000009726) #15	KCNMB3 (ENSPTIG00000009324) #16	ZNF639 (ENSPTIG00000009164) #18	MFN1 (ENSPTIG00000008839) #19	GNB4 (ENSPTIG00000008698) #20	ENSPTIG00000008626	ACTL6A (ENSPTIG00000008261) #22	MRPL47 (ENSPTIG00000007879) #23	NDUFB5 (ENSPTIG00000007631) #24	USP13 (ENSPTIG00000007161) #25	ENSPTIG00000009433	PEX5L (ENSPTIG00000004084) #26	TTC14 (ENSPTIG00000001841) #28	CCDC39 (ENSPTIG00000001676) #29	FXR1 (ENSPTIG00000019748) #32	DNAJC19 (ENSPTIG00000019574) #33	ENSPTIG00000019532	ATP11B (ENSPTIG00000018956)	DCUN1D1 (ENSPTIG00000018800)	MCCC1 (ENSPTIG00000018514)	LAMP3 (ENSPTIG00000018429)	B3GNT5 (ENSPTIG00000009347)
Cat	MODERN SPECIES	240	NCEH1 (ENSFCAG00000028457)	ECT2 (ENSFCAG00000018600)	SPATA16 (ENSFCAG00000010284)	NLGN1 (ENSFCAG00000008779) #7	ENSFCAG00000038414	NAALADL2 (ENSFCAG00000041177) #9	TBL1XR1 (ENSFCAG00000002457) #11	ENSFCAG00000041738	KCNMB2 (ENSFCAG00000006044) #13	ZMAT3 (ENSFCAG00000014578) #14	PIK3CA (ENSFCAG00000018737) #15	KCNMB3 (ENSFCAG00000041547) #16	ZNF639 (ENSFCAG00000012004) #18	MFN1 (ENSFCAG00000028181) #19	GNB4 (ENSFCAG00000039564) #20	ACTL6A (ENSFCAG00000012364) #22	MRPL47 (ENSFCAG00000039093) #23	NDUFB5 (ENSFCAG00000012365) #24	USP13 (ENSFCAG00000025086) #25	PEX5L (ENSFCAG00000012367) #26	TTC14 (ENSFCAG00000027763) #28	CCDC39 (ENSFCAG00000029319) #29	ENSFCAG00000035458	FXR1 (ENSFCAG00000022259) #32	ENSFCAG00000010591 ##33	ENSFCAG00000043744	ENSFCAG00000039424	ATP11B (ENSFCAG00000026272)	DCUN1D1 (ENSFCAG00000032259)	MCCC1 (ENSFCAG00000000940)	LAMP3 (ENSFCAG00000028212)
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Equus	ANCESTRAL SPECIES	19	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00990000205077	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676
Horse	MODERN SPECIES	10	NAALADL2 (ENSECAG00000016282) #9	ENSECAG00000045243	ENSECAG00000052492	ENSECAG00000053463	ENSECAG00000049777	ENSECAG00000048291	ENSECAG00000049616	TBL1XR1 (ENSECAG00000008249) #11	KCNMB2 (ENSECAG00000009088) #13	ZMAT3 (ENSECAG00000012784) #14	PIK3CA (ENSECAG00000015019) #15	KCNMB3 (ENSECAG00000014580) #16	ZNF639 (ENSECAG00000015691) #18	MFN1 (ENSECAG00000018551) #19	GNB4 (ENSECAG00000008196) #20	ACTL6A (ENSECAG00000013622) #22	MRPL47 (ENSECAG00000018545) #23	NDUFB5 (ENSECAG00000000682) #24	USP13 (ENSECAG00000004152) #25	PEX5L (ENSECAG00000006506) #26	ENSECAG00000057496	TTC14 (ENSECAG00000014616) #28	CCDC39 (ENSECAG00000021390) #29	FXR1 (ENSECAG00000007560) #32	ENSECAG00000034995	DNAJC19 (ENSECAG00000009331) #33	ENSECAG00000051089	SOX2 (ENSECAG00000010653) #35	ATP11B (ENSECAG00000016912)	ENSECAG00000045511	DCUN1D1 (ENSECAG00000021365)
Donkey	MODERN SPECIES	25	NCEH1 (ENSEASG00005017188)	ECT2 (ENSEASG00005016949)	SPATA16 (ENSEASG00005016917)	NLGN1 (ENSEASG00005033409) #7	NAALADL2 (ENSEASG00005016907) #9	ENSEASG00005016908	ENSEASG00005036049	TBL1XR1 (ENSEASG00005016897) #11	KCNMB2 (ENSEASG00005016891) #13	ZMAT3 (ENSEASG00005016887) #14	PIK3CA (ENSEASG00005016884) #15	ENSEASG00005016880 #16	ZNF639 (ENSEASG00005016879) #18	MFN1 (ENSEASG00005016871) #19	GNB4 (ENSEASG00005016867) #20	ACTL6A (ENSEASG00005016862) #22	MRPL47 (ENSEASG00005016858) #23	NDUFB5 (ENSEASG00005016854) #24	USP13 (ENSEASG00005016850) #25	PEX5L (ENSEASG00005016845) #26	TTC14 (ENSEASG00005016838) #28	CCDC39 (ENSEASG00005016830) #29	FXR1 (ENSEASG00005016818) #32	DNAJC19 (ENSEASG00005016812) #33	SOX2 (ENSEASG00005038258) #35	ATP11B (ENSEASG00005016115)	DCUN1D1 (ENSEASG00005016038)	MCCC1 (ENSEASG00005015339)	ENSEASG00005015308	MCF2L2 (ENSEASG00005015300)	B3GNT5 (ENSEASG00005038666)
Chiroptera	ANCESTRAL SPECIES	13	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941.h	ENSGT00950000182899.C.a	ENSGT00940000159676
Megabat	MODERN SPECIES	741																ACTL6A (ENSPVAG00000004278) #22	MRPL47 (ENSPVAG00000004284) #23	NDUFB5 (ENSPVAG00000004286) #24	USP13 (ENSPVAG00000004289) #25	PEX5L (ENSPVAG00000004290) #26
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00860000135711	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941.h	ENSGT00950000182899.C.a	ENSGT00940000159676
Microbat	MODERN SPECIES	951									KCNMB2 (ENSMLUG00000006514) #13	ZMAT3 (ENSMLUG00000013074) #14	PIK3CA (ENSMLUG00000009229) #15	KCNMB3 (ENSMLUG00000009263) #16	ZNF639 (ENSMLUG00000007597) #18	MFN1 (ENSMLUG00000007603) #19	GNB4 (ENSMLUG00000007640) #20	ACTL6A (ENSMLUG00000024899) #22	MRPL47 (ENSMLUG00000000996) #23	NDUFB5 (ENSMLUG00000000999) #24	USP13 (ENSMLUG00000013714) #25	PEX5L (ENSMLUG00000011630) #26	ENSMLUG00000028182	TTC14 (ENSMLUG00000010448) #28	CCDC39 (ENSMLUG00000010487) #29	FXR1 (ENSMLUG00000006840) #32	ENSMLUG00000006865 #33	SOX2 (ENSMLUG00000013015) #35	ENSMLUG00000006369	ATP11B (ENSMLUG00000000492)	DCUN1D1 (ENSMLUG00000012251)	MCCC1 (ENSMLUG00000012257)	LAMP3 (ENSMLUG00000012272)
Greater horseshoe bat	MODERN SPECIES	11	SPATA16 (ENSRFEG00010000235)	ENSRFEG00010000208	NLGN1 (ENSRFEG00010000199) #7	ENSRFEG00010000186	NAALADL2 (ENSRFEG00010000176) #9	ENSRFEG00010000156	TBL1XR1 (ENSRFEG00010000145) #11	KCNMB2 (ENSRFEG00010000136) #13	ZMAT3 (ENSRFEG00010000131) #14	ENSRFEG00010000122	PIK3CA (ENSRFEG00010021761) #15	ENSRFEG00010021748 #16	ZNF639 (ENSRFEG00010021744) #18	MFN1 (ENSRFEG00010021730) #19	GNB4 (ENSRFEG00010021722) #20	ACTL6A (ENSRFEG00010021704) #22	MRPL47 (ENSRFEG00010021687) #23	ENSRFEG00010021670 #24	USP13 (ENSRFEG00010021639) #25	ENSRFEG00010021630	PEX5L (ENSRFEG00010021467) #26	TTC14 (ENSRFEG00010021404) #28	CCDC39 (ENSRFEG00010021385) #29	FXR1 (ENSRFEG00010021302) #32	DNAJC19 (ENSRFEG00010021277) #33	ENSRFEG00010021268	ENSRFEG00010021250	ENSRFEG00010021233	ATP11B (ENSRFEG00010021177)	DCUN1D1 (ENSRFEG00010021156)	ENSRFEG00010021147
Eulipotyphla	ANCESTRAL SPECIES	466																ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24
Hedgehog	MODERN SPECIES	3370																ACTL6A (ENSEEUG00000012092) #22	MRPL47 (ENSEEUG00000012255) #23
Common shrew	MODERN SPECIES	2522																ACTL6A (ENSSARG00000013987) #22
Atlantogenata	ANCESTRAL SPECIES	19	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000154384.h.b ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000164015
Xenarthra	ANCESTRAL SPECIES	380									ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26
Armadillo	MODERN SPECIES	3929			ENSDNOG00000042108	ORC5 (ENSDNOG00000035576)	ENSDNOG00000002481	PSMC2 (ENSDNOG00000002708)	DNAJC2 (ENSDNOG00000002705)	PMPCB (ENSDNOG00000002703)	NAPEPLD (ENSDNOG00000019995)	ENSDNOG00000008119	ENSDNOG00000014019 #15	KCNMB3 (ENSDNOG00000042171) #16	ZNF639 (ENSDNOG00000046090) #18	MFN1 (ENSDNOG00000000527) #19	ENSDNOG00000045453 #20	ACTL6A (ENSDNOG00000011367) #22	MRPL47 (ENSDNOG00000015052) #23	NDUFB5 (ENSDNOG00000046543) #24	USP13 (ENSDNOG00000004938) #25	PEX5L (ENSDNOG00000004945) #26	ENSDNOG00000045799	ENSDNOG00000043689	ENSDNOG00000013231
Sloth	MODERN SPECIES	2928																ACTL6A (ENSCHOG00000009477) #22
Afrotheria	ANCESTRAL SPECIES	17																ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000154384.h.b ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000164015
Tenrec	MODERN SPECIES	3247																ACTL6A (ENSETEG00000019357) #22	MRPL47 (ENSETEG00000019362) #23	NDUFB5 (ENSETEG00000019363) #24
Afrotheria_a	ANCESTRAL SPECIES	16																ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.a #33	ENSGT00940000154384.h.b ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000164015
Hyrax	MODERN SPECIES	2650																ACTL6A (ENSPCAG00000016438) #22	MRPL47 (ENSPCAG00000016517) #23	NDUFB5 (ENSPCAG00000016547) #24
Elephant	MODERN SPECIES	261															MFN1 (ENSLAFG00000008856) #19	ACTL6A (ENSLAFG00000013530) #22	MRPL47 (ENSLAFG00000018470) #23	NDUFB5 (ENSLAFG00000022619) #24	USP13 (ENSLAFG00000015504) #25	PEX5L (ENSLAFG00000015513) #26	TTC14 (ENSLAFG00000013418) #28	CCDC39 (ENSLAFG00000013426) #29	FXR1 (ENSLAFG00000001908) #32	ENSLAFG00000001910 ##33	SOX2 (ENSLAFG00000006096) #35	ATP11B (ENSLAFG00000010151)	DCUN1D1 (ENSLAFG00000016514)	MCCC1 (ENSLAFG00000018018)	LAMP3 (ENSLAFG00000022746)	B3GNT5 (ENSLAFG00000000374)	ENSLAFG00000000369
Marsupialia	ANCESTRAL SPECIES	8	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676
Opossum	MODERN SPECIES	6	SPATA16 (ENSMODG00000021318)	NLGN1 (ENSMODG00000021315) #7	NAALADL2 (ENSMODG00000021314) #9	ENSMODG00000024795	ENSMODG00000051427	ENSMODG00000021313	ENSMODG00000027370	TBL1XR1 (ENSMODG00000021312) #11	KCNMB2 (ENSMODG00000021309) #13	ZMAT3 (ENSMODG00000021308) #14	PIK3CA (ENSMODG00000021305) #15	KCNMB3 (ENSMODG00000021307) #16	ZNF639 (ENSMODG00000021306) #18	MFN1 (ENSMODG00000021304) #19	GNB4 (ENSMODG00000021303) #20	ACTL6A (ENSMODG00000021302) #22	ENSMODG00000041416 #23	NDUFB5 (ENSMODG00000021300) #24	USP13 (ENSMODG00000021299) #25	ENSMODG00000029313	PEX5L (ENSMODG00000021298) #26	TTC14 (ENSMODG00000021296) #28	CCDC39 (ENSMODG00000021295) #29	FXR1 (ENSMODG00000021294) #32	ENSMODG00000021293 ##33	ENSMODG00000049678	ENSMODG00000028312	ENSMODG00000041249	ENSMODG00000045209	ENSMODG00000021291	DCUN1D1 (ENSMODG00000039145)
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.j #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b ##33	ENSGT00940000160614 #35	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676
Diprotodontia	ANCESTRAL SPECIES	17	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00950000182965.a.b.b.a.a.a.a.a.b	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.j #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b ##33	ENSGT00940000160614 #35	ENSGT00940000161383.f	ENSGT00390000003897.s.b.d.a	ENSGT00530000063687.b.b.b.h	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941
Diprotodontia_a	ANCESTRAL SPECIES	19	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00950000182965.a.b.b.a.a.a.a.a.b	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.j #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.h.b ##33	ENSGT00940000160614 #35	ENSGT00940000161383.f	ENSGT00390000003897.s.b.d.a	ENSGT00530000063687.b.b.b.h	ENSGT00940000156162.C.k	ENSGT00940000154552	ENSGT00940000156941
koala	MODERN SPECIES	9	SPATA16 (ENSPCIG00000010299)	ENSPCIG00000035061	NLGN1 (ENSPCIG00000023665) #7	NAALADL2 (ENSPCIG00000036959) #9	ENSPCIG00000010041	ENSPCIG00000030517	TBL1XR1 (ENSPCIG00000028583) #11	KCNMB2 (ENSPCIG00000006759) #13	ZMAT3 (ENSPCIG00000034195) #14	ENSPCIG00000006763	PIK3CA (ENSPCIG00000006767) #15	KCNMB3 (ENSPCIG00000010392) #16	ZNF639 (ENSPCIG00000010395) #18	MFN1 (ENSPCIG00000006771) #19	GNB4 (ENSPCIG00000006774) #20	ACTL6A (ENSPCIG00000006777) #22	ENSPCIG00000006780 #23	ENSPCIG00000032372 #24	USP13 (ENSPCIG00000023996) #25	PEX5L (ENSPCIG00000024006) #26	TTC14 (ENSPCIG00000019438) #28	CCDC39 (ENSPCIG00000034234) #29	ENSPCIG00000019447	FXR1 (ENSPCIG00000026314) #32	ENSPCIG00000026316 ##33	ATP11B (ENSPCIG00000013021)	DCUN1D1 (ENSPCIG00000013025)	MCCC1 (ENSPCIG00000013027)	ENSPCIG00000013028	ENSPCIG00000013031	B3GNT5 (ENSPCIG00000013050)
Common wonbat	MODERN SPECIES	1046	GHSR (ENSVURG00010012811)	TNFSF10 (ENSVURG00010012804)	ENSVURG00010012795	ECT2 (ENSVURG00010012760)	SPATA16 (ENSVURG00010012732)	NLGN1 (ENSVURG00010012715) #7	NAALADL2 (ENSVURG00010012681) #9	ENSVURG00010012660	TBL1XR1 (ENSVURG00010012629) #11	KCNMB2 (ENSVURG00010012605) #13	PIK3CA (ENSVURG00010012578) #15	KCNMB3 (ENSVURG00010012570) #16	ZNF639 (ENSVURG00010012565) #18	MFN1 (ENSVURG00010012549) #19	GNB4 (ENSVURG00010012529) #20	ACTL6A (ENSVURG00010012511) #22	MRPL47 (ENSVURG00010012499) #23	NDUFB5 (ENSVURG00010012488) #24	USP13 (ENSVURG00010012461) #25	PEX5L (ENSVURG00010012070) #26	ENSVURG00010012046 #28	ENSVURG00010012039 #28	CCDC39 (ENSVURG00010012026) #29	FXR1 (ENSVURG00010011990) #32	ENSVURG00010011974 ##33	SOX2 (ENSVURG00010011967) #35	ENSVURG00010011959	ATP11B (ENSVURG00010011883)	DCUN1D1 (ENSVURG00010011851)	MCCC1 (ENSVURG00010011829)	ENSVURG00010011796
Wallaby	MODERN SPECIES	4285																ACTL6A (ENSMEUG00000012631) #22	ENSMEUG00000012649 #23
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000031725	NCEH1 (ENSSHAG00000025000)	ECT2 (ENSSHAG00000010171)	SPATA16 (ENSSHAG00000010931)	NLGN1 (ENSSHAG00000016978) #7	NAALADL2 (ENSSHAG00000018074) #9	ENSSHAG00000022530	TBL1XR1 (ENSSHAG00000005700) #11	KCNMB2 (ENSSHAG00000027317) #13	ZMAT3 (ENSSHAG00000016154) #14	PIK3CA (ENSSHAG00000016406) #15	KCNMB3 (ENSSHAG00000016520) #16	ZNF639 (ENSSHAG00000016769) #18	MFN1 (ENSSHAG00000016834) #19	GNB4 (ENSSHAG00000016950) #20	ACTL6A (ENSSHAG00000017237) #22	MRPL47 (ENSSHAG00000017273) #23	NDUFB5 (ENSSHAG00000021190) #24	USP13 (ENSSHAG00000017431) #25	PEX5L (ENSSHAG00000017604) #26	TTC14 (ENSSHAG00000018408) #28	CCDC39 (ENSSHAG00000018433) #29	FXR1 (ENSSHAG00000018625) #32	ENSSHAG00000018671 ##33	SOX2 (ENSSHAG00000020580) #35	ATP11B (ENSSHAG00000015543)	DCUN1D1 (ENSSHAG00000015925)	MCCC1 (ENSSHAG00000016104)	ENSSHAG00000016243	ENSSHAG00000016433	ENSSHAG00000031434
Platypus	MODERN SPECIES		NCEH1 (ENSOANG00000039720)	ECT2 (ENSOANG00000013671)	SPATA16 (ENSOANG00000022205)	NLGN1 (ENSOANG00000050589) #7	NAALADL2 (ENSOANG00000049145) #9	ENSOANG00000049897	TBL1XR1 (ENSOANG00000009492) #11	ENSOANG00000001673	KCNMB2 (ENSOANG00000040015) #13	ZMAT3 (ENSOANG00000009901) #14	PIK3CA (ENSOANG00000013922) #15	KCNMB3 (ENSOANG00000013923) #16	ZNF639 (ENSOANG00000012679) #18	MFN1 (ENSOANG00000004694) #19	GNB4 (ENSOANG00000004695) #20	ACTL6A (ENSOANG00000044256) #22	MRPL47 (ENSOANG00000002137) #23	ENSOANG00000021730 #24	USP13 (ENSOANG00000050467) #25	PEX5L (ENSOANG00000041655) #26	TTC14 (ENSOANG00000003676) #28	CCDC39 (ENSOANG00000020027) #29	FXR1 (ENSOANG00000011045) #32	DNAJC19 (ENSOANG00000011044) #33	ENSOANG00000011256	ENSOANG00000045472	DCUN1D1 (ENSOANG00000011254)	MCCC1 (ENSOANG00000011253)	ENSOANG00000011252	ENSOANG00000050093	B3GNT5 (ENSOANG00000009184)
Sauria	ANCESTRAL SPECIES	9	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00960000190572	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Lepidosauria	ANCESTRAL SPECIES	12	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00960000190572	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000164015
Episquamata	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00960000190572	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000164015
Laterata	ANCESTRAL SPECIES		ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00960000190572	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00940000164015	ENSGT00940000159676	ENSGT00940000161734
Common wall lizard	MODERN SPECIES	13	ENSPMRG00000003026	TBL1XR1 (ENSPMRG00000003048) #11	ENSPMRG00000003094	ENSPMRG00000003104	KCNMB2 (ENSPMRG00000003126) #13	ENSPMRG00000003152 #14	ENSPMRG00000003165	ENSPMRG00000003168 #14	PIK3CA (ENSPMRG00000003186) #15	ENSPMRG00000003204	ZNF639 (ENSPMRG00000003214) #18	MFN1 (ENSPMRG00000003386) #19	GNB4 (ENSPMRG00000003918) #20	ENSPMRG00000003923	NIFK (ENSPMRG00000003928)	ACTL6A (ENSPMRG00000003934) #22	ENSPMRG00000003959 #23	ENSPMRG00000003984 #23	NDUFB5 (ENSPMRG00000003995) #24	ENSPMRG00000004003	USP13 (ENSPMRG00000004010) #25	PEX5L (ENSPMRG00000004041) #26	ENSPMRG00000004145	CCDC39 (ENSPMRG00000004156) #29	FXR1 (ENSPMRG00000004189) #32	ENSPMRG00000004207	DNAJC19 (ENSPMRG00000004217) #33	ENSPMRG00000004232	ENSPMRG00000004270	ENSPMRG00000004385	DCUN1D1 (ENSPMRG00000004392)
Argentine black and white tegu	MODERN SPECIES	21	NCEH1 (ENSSMRG00000023639)	ECT2 (ENSSMRG00000023637)	SPATA16 (ENSSMRG00000023636)	NLGN1 (ENSSMRG00000023635) #7	NAALADL2 (ENSSMRG00000023630) #9	TBL1XR1 (ENSSMRG00000023626) #11	KCNMB2 (ENSSMRG00000023624) #13	ZMAT3 (ENSSMRG00000023623) #14	PIK3CA (ENSSMRG00000023622) #15	ENSSMRG00000023621	ZNF639 (ENSSMRG00000023620) #18	MFN1 (ENSSMRG00000023619) #19	ENSSMRG00000023618 ##20	ENSSMRG00000023617 #20	NIFK (ENSSMRG00000023616)	ACTL6A (ENSSMRG00000023614) #22	MRPL47 (ENSSMRG00000023613) #23	NDUFB5 (ENSSMRG00000023612) #24	USP13 (ENSSMRG00000023611) #25	PEX5L (ENSSMRG00000023610) #26	ENSSMRG00000023609	TTC14 (ENSSMRG00000023608) #28	ENSSMRG00000023607	CCDC39 (ENSSMRG00000023606) #29	FXR1 (ENSSMRG00000023605) #32	DNAJC19 (ENSSMRG00000023604) #33	ENSSMRG00000023601	ATP11B (ENSSMRG00000023598)	DCUN1D1 (ENSSMRG00000023597)	MCCC1 (ENSSMRG00000023596)	ENSSMRG00000023595
Toxicofera	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00960000190572	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00390000006293.td	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00960000190572	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676
Elapidae_a	ANCESTRAL SPECIES		ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b.u #11	ENSGT00950000183039.B.b.a #13	ENSGT00390000006293.td	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00960000190572	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000164015
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b.u #11	ENSGT00950000183039.B.b.a #13	ENSGT00390000006293.td	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00960000190572	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000164015
Mainland tiger snake	MODERN SPECIES		SPATA16 (ENSNSUG00000003835)	ENSNSUG00000003858 #7	ENSNSUG00000003867	NLGN1 (ENSNSUG00000003879) #7	NAALADL2 (ENSNSUG00000003894) #9	TBL1XR1 (ENSNSUG00000003899) #11	KCNMB2 (ENSNSUG00000003916) #13	ENSNSUG00000003919	ZMAT3 (ENSNSUG00000003923) #14	PIK3CA (ENSNSUG00000003932) #15	ENSNSUG00000004425	ZNF639 (ENSNSUG00000004427) #18	MFN1 (ENSNSUG00000004432) #19	GNB4 (ENSNSUG00000004440) #20	NIFK (ENSNSUG00000004538)	ACTL6A (ENSNSUG00000004551) #22	MRPL47 (ENSNSUG00000004553) #23	NDUFB5 (ENSNSUG00000004556) #24	USP13 (ENSNSUG00000004559) #25	PEX5L (ENSNSUG00000004565) #26	TTC14 (ENSNSUG00000004573) #28	CCDC39 (ENSNSUG00000004589) #29	FXR1 (ENSNSUG00000004596) #32	DNAJC19 (ENSNSUG00000004600) #33	SOX2 (ENSNSUG00000004653) #35
Eastern brown snake	MODERN SPECIES	29	TNFSF10 (ENSPTXG00000013335)	NCEH1 (ENSPTXG00000013334)	ENSPTXG00000013332	ENSPTXG00000013331	SPATA16 (ENSPTXG00000013329)	NLGN1 (ENSPTXG00000013325) #7	NAALADL2 (ENSPTXG00000013319) #9	TBL1XR1 (ENSPTXG00000013314) #11	KCNMB2 (ENSPTXG00000017809) #13	ZMAT3 (ENSPTXG00000017808) #14	PIK3CA (ENSPTXG00000017806) #15	ZNF639 (ENSPTXG00000017805) #18	MFN1 (ENSPTXG00000017761) #19	GNB4 (ENSPTXG00000017756) #20	NIFK (ENSPTXG00000017754)	ACTL6A (ENSPTXG00000017752) #22	MRPL47 (ENSPTXG00000017751) #23	NDUFB5 (ENSPTXG00000017750) #24	USP13 (ENSPTXG00000017659) #25	PEX5L (ENSPTXG00000017655) #26	TTC14 (ENSPTXG00000017654) #28	ENSPTXG00000017653	ENSPTXG00000017651 #29	FXR1 (ENSPTXG00000017650) #32	DNAJC19 (ENSPTXG00000017649) #33	SOX2 (ENSPTXG00000017648) #35	ENSPTXG00000017647	ATP11B (ENSPTXG00000017645)	DCUN1D1 (ENSPTXG00000017644)	MCCC1 (ENSPTXG00000017643)	LAMP3 (ENSPTXG00000017642)
Blue-lipped sea krait	MODERN SPECIES	3690															NIFK (ENSLLTG00000007602)	ACTL6A (ENSLLTG00000007568) #22	MRPL47 (ENSLLTG00000007524) #23	NDUFB5 (ENSLLTG00000007498) #24
Indian cobra	MODERN SPECIES	3	NCEH1 (ENSNNAG00000016440)	ECT2 (ENSNNAG00000016490)	SPATA16 (ENSNNAG00000016632)	NLGN1 (ENSNNAG00000016645) #7	NAALADL2 (ENSNNAG00000016653) #9	TBL1XR1 (ENSNNAG00000016658) #11	KCNMB2 (ENSNNAG00000016680) #13	ENSNNAG00000007595	ENSNNAG00000007631	ZMAT3 (ENSNNAG00000007645) #14	PIK3CA (ENSNNAG00000007680) #15	ZNF639 (ENSNNAG00000007836) #18	MFN1 (ENSNNAG00000007861) #19	GNB4 (ENSNNAG00000007920) #20	NIFK (ENSNNAG00000007941)	ACTL6A (ENSNNAG00000007971) #22	MRPL47 (ENSNNAG00000008025) #23	NDUFB5 (ENSNNAG00000008239) #24	USP13 (ENSNNAG00000008293) #25	PEX5L (ENSNNAG00000008347) #26	TTC14 (ENSNNAG00000008565) #28	ENSNNAG00000008598	CCDC39 (ENSNNAG00000008649) #29	FXR1 (ENSNNAG00000008767) #32	DNAJC19 (ENSNNAG00000010510) #33	SOX2 (ENSNNAG00000010554) #35	ATP11B (ENSNNAG00000010604)	DCUN1D1 (ENSNNAG00000011093)	MCCC1 (ENSNNAG00000011141)	ENSNNAG00000011193	MCF2L2 (ENSNNAG00000011227)
Lizard	MODERN SPECIES	2	ENSACAG00000034977	ENSACAG00000037636	TBL1XR1 (ENSACAG00000013442) #11	ENSACAG00000041605	ENSACAG00000040731	ENSACAG00000036596	KCNMB2 (ENSACAG00000005012) #13	ENSACAG00000042133	ZMAT3 (ENSACAG00000005005) #14	PIK3CA (ENSACAG00000004872) #15	ZNF639 (ENSACAG00000044413) #18	MFN1 (ENSACAG00000004702) #19	GNB4 (ENSACAG00000004667) #20	ENSACAG00000004655	ENSACAG00000044517	ACTL6A (ENSACAG00000004548) #22	MRPL47 (ENSACAG00000043862) #23	NDUFB5 (ENSACAG00000004465) #24	USP13 (ENSACAG00000004318) #25	PEX5L (ENSACAG00000004210) #26	TTC14 (ENSACAG00000004108) #28	ENSACAG00000044880	ENSACAG00000040084	CCDC39 (ENSACAG00000004063) #29	FXR1 (ENSACAG00000003918) #32	DNAJC19 (ENSACAG00000003917) #33	ENSACAG00000042518	ENSACAG00000040070	ENSACAG00000038324	ATP11B (ENSACAG00000007250)	DCUN1D1 (ENSACAG00000007413)
tuatara	MODERN SPECIES	1534									TBL1XR1 (ENSSPUG00000014823) #11	KCNMB2 (ENSSPUG00000014799) #13	ZMAT3 (ENSSPUG00000014753) #14	PIK3CA (ENSSPUG00000014720) #15	ZNF639 (ENSSPUG00000014710) #18	MFN1 (ENSSPUG00000014691) #19	GNB4 (ENSSPUG00000014672) #20	ACTL6A (ENSSPUG00000014641) #22	MRPL47 (ENSSPUG00000014635) #23	NDUFB5 (ENSSPUG00000014622) #24	USP13 (ENSSPUG00000014601) #25	PEX5L (ENSSPUG00000014580) #26	ENSSPUG00000014567 #28	ENSSPUG00000014559 #28	CCDC39 (ENSSPUG00000014545) #29	FXR1 (ENSSPUG00000014501) #32	DNAJC19 (ENSSPUG00000014476) #33	ENSSPUG00000014466	SOX2 (ENSSPUG00000014432) #35	ENSSPUG00000014421	ENSSPUG00000014405	ENSSPUG00000014393	DCUN1D1 (ENSSPUG00000014386)
Archelosauria	ANCESTRAL SPECIES	11	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369.a	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00960000190572	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Archosauria	ANCESTRAL SPECIES	10	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00960000190572	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Aves	ANCESTRAL SPECIES	13	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676
Neognathae	ANCESTRAL SPECIES	9	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676
Galloanserae	ANCESTRAL SPECIES	16	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00990000203899
Phasianidae	ANCESTRAL SPECIES	9	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.e #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00990000203899
Japanese quail	MODERN SPECIES	27	FNDC3B (ENSCJPG00005014275)	GHS-R (ENSCJPG00005014274)	TNFSF10 (ENSCJPG00005014273)	NCEH1 (ENSCJPG00005014272)	ECT2 (ENSCJPG00005014271)	SPATA16 (ENSCJPG00005014270)	NLGN1 (ENSCJPG00005014267) #7	NAALADL2 (ENSCJPG00005014265) #9	TBL1XR1 (ENSCJPG00005014262) #11	KCNMB2 (ENSCJPG00005014256) #13	ZMAT3 (ENSCJPG00005014255) #14	PIK3CA (ENSCJPG00005014254) #15	ZNF639 (ENSCJPG00005014253) #18	MFN1 (ENSCJPG00005014252) #19	GNB4 (ENSCJPG00005014251) #20	ACTL6A (ENSCJPG00005014250) #22	MRPL47 (ENSCJPG00005014249) #23	NDUFB5 (ENSCJPG00005014248) #24	USP13 (ENSCJPG00005014247) #25	PEX5L (ENSCJPG00005014246) #26	TTC14 (ENSCJPG00005014245) #28	CCDC39 (ENSCJPG00005014244) #29	FXR1 (ENSCJPG00005014242) #32	DNAJC19 (ENSCJPG00005014236) #33	SOX2 (ENSCJPG00005014232) #35	ATP11B (ENSCJPG00005014227)	DCUN1D1 (ENSCJPG00005014226)	MCCC1 (ENSCJPG00005014225)	ENSCJPG00005014224	B3GNT5 (ENSCJPG00005014223)	MCF2L2 (ENSCJPG00005013794)
Phasianidae_b	ANCESTRAL SPECIES	12	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384.e #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00990000203899
Chicken	MODERN SPECIES	38	FNDC3B (ENSGALG00010018579)	GHSR (ENSGALG00010018549)	TNFSF10 (ENSGALG00010018540)	NCEH1 (ENSGALG00010018534)	ECT2 (ENSGALG00010018517)	SPATA16 (ENSGALG00010018507)	NLGN1 (ENSGALG00010018484) #7	NAALADL2 (ENSGALG00010018465) #9	TBL1XR1 (ENSGALG00010018396) #11	KCNMB2 (ENSGALG00010018349) #13	ZMAT3 (ENSGALG00010018317) #14	PIK3CA (ENSGALG00010018296) #15	ZNF639 (ENSGALG00010018275) #18	MFN1 (ENSGALG00010018255) #19	GNB4 (ENSGALG00010018185) #20	ACTL6A (ENSGALG00010018172) #22	MRPL47 (ENSGALG00010018143) #23	NDUFB5 (ENSGALG00010018137) #24	USP13 (ENSGALG00010018123) #25	PEX5L (ENSGALG00010018055) #26	TTC14 (ENSGALG00010018039) #28	CCDC39 (ENSGALG00010018026) #29	FXR1 (ENSGALG00010016652) #32	DNAJC19 (ENSGALG00010016614) #33	SOX2 (ENSGALG00010016609) #35	ATP11B (ENSGALG00010016588)	DCUN1D1 (ENSGALG00010016529)	MCCC1 (ENSGALG00010016475)	LAMP3 (ENSGALG00010016456)	B3GNT5 (ENSGALG00010016431)	MCF2L2 (ENSGALG00010016355)
Turkey	MODERN SPECIES	2	GHSR (ENSMGAG00000010038)	TNFSF10 (ENSMGAG00000010032)	NCEH1 (ENSMGAG00000010017)	ECT2 (ENSMGAG00000009941)	SPATA16 (ENSMGAG00000009930)	NLGN1 (ENSMGAG00000009919) #7	NAALADL2 (ENSMGAG00000009912) #9	TBL1XR1 (ENSMGAG00000009892) #11	ENSMGAG00000021926	KCNMB2 (ENSMGAG00000009882) #13	ZMAT3 (ENSMGAG00000009873) #14	PIK3CA (ENSMGAG00000009828) #15	ZNF639 (ENSMGAG00000009823) #18	MFN1 (ENSMGAG00000009801) #19	GNB4 (ENSMGAG00000002359) #20	ACTL6A (ENSMGAG00000009756) #22	NDUFB5 (ENSMGAG00000009730) #24	MRPL47 (ENSMGAG00000020958) #23	USP13 (ENSMGAG00000009725) #25	PEX5L (ENSMGAG00000009710) #26	TTC14 (ENSMGAG00000009680) #28	CCDC39 (ENSMGAG00000009659) #29	FXR1 (ENSMGAG00000009602) #32	ENSMGAG00000021069 #33	ATP11B (ENSMGAG00000009540)	DCUN1D1 (ENSMGAG00000009535)	MCCC1 (ENSMGAG00000009494)	ENSMGAG00000009487	B3GNT5 (ENSMGAG00000016047)	ENSMGAG00000020114	MCF2L2 (ENSMGAG00000009434)
Anatidae	ANCESTRAL SPECIES	31	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000161734	ENSGT00550000074917
Pink-footed goose	MODERN SPECIES	72	FNDC3B (ENSABRG00000001285)	GHSR (ENSABRG00000001233)	TNFSF10 (ENSABRG00000001164)	NCEH1 (ENSABRG00000001148)	ECT2 (ENSABRG00000001001)	SPATA16 (ENSABRG00000000786)	NLGN1 (ENSABRG00000022582) #7	NAALADL2 (ENSABRG00000022575) #9	TBL1XR1 (ENSABRG00000022555) #11	KCNMB2 (ENSABRG00000022545) #13	ZMAT3 (ENSABRG00000022537) #14	PIK3CA (ENSABRG00000022535) #15	ZNF639 (ENSABRG00000022534) #18	MFN1 (ENSABRG00000022532) #19	GNB4 (ENSABRG00000022531) #20	ACTL6A (ENSABRG00000022528) #22	MRPL47 (ENSABRG00000022527) #23	NDUFB5 (ENSABRG00000022526) #24	USP13 (ENSABRG00000022524) #25	PEX5L (ENSABRG00000022519) #26	TTC14 (ENSABRG00000022518) #28	ENSABRG00000022512 #29
Duck	MODERN SPECIES	27	FNDC3B (ENSAPLG00000012065)	GHSR (ENSAPLG00000012064)	TNFSF10 (ENSAPLG00000022295)	NCEH1 (ENSAPLG00000011627)	ECT2 (ENSAPLG00000010339)	SPATA16 (ENSAPLG00000010186)	NLGN1 (ENSAPLG00000010082) #7	NAALADL2 (ENSAPLG00000010077) #9	TBL1XR1 (ENSAPLG00000013445) #11	KCNMB2 (ENSAPLG00000020595) #13	ZMAT3 (ENSAPLG00000013292) #14	PIK3CA (ENSAPLG00000012924) #15	ZNF639 (ENSAPLG00000012914) #18	MFN1 (ENSAPLG00000012500) #19	GNB4 (ENSAPLG00000012235) #20	ACTL6A (ENSAPLG00000011809) #22	MRPL47 (ENSAPLG00000011793) #23	USP13 (ENSAPLG00000011239) #25	PEX5L (ENSAPLG00000011193) #26	TTC14 (ENSAPLG00000010921) #28	CCDC39 (ENSAPLG00000010760) #29	FXR1 (ENSAPLG00000010032) #32	DNAJC19 (ENSAPLG00000009956) #33	ATP11B (ENSAPLG00000009719)	DCUN1D1 (ENSAPLG00000009496)	MCCC1 (ENSAPLG00000008989)	ENSAPLG00000021030	B3GNT5 (ENSAPLG00000000814)	MCF2L2 (ENSAPLG00000007943)	RFC4 (ENSAPLG00000007380)	EIF4A2 (ENSAPLG00000006751)
Neognathae_b	ANCESTRAL SPECIES	11	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676
Neognathae_c	ANCESTRAL SPECIES	13	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734	ENSGT00940000159676	ENSGT00990000203899
Golden eagle	MODERN SPECIES	1	TNFSF10 (ENSACCG00020004457)	NCEH1 (ENSACCG00020004468)	ENSACCG00020004485	ENSACCG00020004492	SPATA16 (ENSACCG00020004502)	NLGN1 (ENSACCG00020004515) #7	NAALADL2 (ENSACCG00020004541) #9	TBL1XR1 (ENSACCG00020004568) #11	KCNMB2 (ENSACCG00020004589) #13	ENSACCG00020004603	ZMAT3 (ENSACCG00020004611) #14	PIK3CA (ENSACCG00020004627) #15	ZNF639 (ENSACCG00020004651) #18	MFN1 (ENSACCG00020004658) #19	GNB4 (ENSACCG00020004669) #20	ACTL6A (ENSACCG00020004677) #22	MRPL47 (ENSACCG00020004710) #23	NDUFB5 (ENSACCG00020000356) #24	USP13 (ENSACCG00020000413) #25	PEX5L (ENSACCG00020000831) #26	TTC14 (ENSACCG00020000953) #28	CCDC39 (ENSACCG00020000987) #29	FXR1 (ENSACCG00020001041) #32	DNAJC19 (ENSACCG00020001068) #33	ATP11B (ENSACCG00020001153)	DCUN1D1 (ENSACCG00020001287)	MCCC1 (ENSACCG00020001312)	ENSACCG00020001340	MCF2L2 (ENSACCG00020001422)	B3GNT5 (ENSACCG00020001574)	RFC4 (ENSACCG00020001586)
Kakapo	MODERN SPECIES	25	GHSR (ENSSHBG00005017789)	TNFSF10 (ENSSHBG00005017794)	NCEH1 (ENSSHBG00005017804)	ENSSHBG00005017809	ENSSHBG00005017821	SPATA16 (ENSSHBG00005017829)	NLGN1 (ENSSHBG00005017842) #7	NAALADL2 (ENSSHBG00005017848) #9	TBL1XR1 (ENSSHBG00005017856) #11	KCNMB2 (ENSSHBG00005017869) #13	ZMAT3 (ENSSHBG00005017878) #14	PIK3CA (ENSSHBG00005000694) #15	ZNF639 (ENSSHBG00005000719) #18	MFN1 (ENSSHBG00005010431) #19	GNB4 (ENSSHBG00005010477) #20	ACTL6A (ENSSHBG00005010515) #22	MRPL47 (ENSSHBG00005010546) #23	NDUFB5 (ENSSHBG00005010573) #24	USP13 (ENSSHBG00005010631) #25	PEX5L (ENSSHBG00005010862) #26	TTC14 (ENSSHBG00005012064) #28	CCDC39 (ENSSHBG00005012103) #29	FXR1 (ENSSHBG00005012156) #32	DNAJC19 (ENSSHBG00005012189) #33	ATP11B (ENSSHBG00005012327)	DCUN1D1 (ENSSHBG00005012436)	MCCC1 (ENSSHBG00005012474)	ENSSHBG00005012503	MCF2L2 (ENSSHBG00005012853)	B3GNT5 (ENSSHBG00005015288)	ENSSHBG00005015293
Passeriformes	ANCESTRAL SPECIES	9	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000161734
Great tit	MODERN SPECIES	29	ENSPMJG00000004658	FNDC3B (ENSPMJG00000003059)	GHSR (ENSPMJG00000003056)	TNFSF10 (ENSPMJG00000003047)	NCEH1 (ENSPMJG00000003040)	ECT2 (ENSPMJG00000003020)	NLGN1 (ENSPMJG00000002987) #7	NAALADL2 (ENSPMJG00000002940) #9	TBL1XR1 (ENSPMJG00000002841) #11	KCNMB2 (ENSPMJG00000002756) #13	ZMAT3 (ENSPMJG00000002709) #14	PIK3CA (ENSPMJG00000002701) #15	ZNF639 (ENSPMJG00000002695) #18	MFN1 (ENSPMJG00000002684) #19	GNB4 (ENSPMJG00000002659) #20	ACTL6A (ENSPMJG00000002638) #22	MRPL47 (ENSPMJG00000002630) #23	NDUFB5 (ENSPMJG00000002618) #24	USP13 (ENSPMJG00000002592) #25	PEX5L (ENSPMJG00000002525) #26	TTC14 (ENSPMJG00000002481) #28	CCDC39 (ENSPMJG00000002417) #29	FXR1 (ENSPMJG00000002237) #32	DNAJC19 (ENSPMJG00000002207) #33	ATP11B (ENSPMJG00000001957)	DCUN1D1 (ENSPMJG00000001941)	MCCC1 (ENSPMJG00000001932)	ENSPMJG00000001928	B3GNT5 (ENSPMJG00000001924)	MCF2L2 (ENSPMJG00000001772)	RFC4 (ENSPMJG00000001751)
Passeriformes_d	ANCESTRAL SPECIES	10	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000161734
Flycatcher	MODERN SPECIES	28	PLD1 (ENSFALG00000008477)	FNDC3B (ENSFALG00000008467)	GHSR (ENSFALG00000008461)	TNFSF10 (ENSFALG00000026290)	NCEH1 (ENSFALG00000008448)	ECT2 (ENSFALG00000008443)	NLGN1 (ENSFALG00000008434) #7	NAALADL2 (ENSFALG00000008425) #9	TBL1XR1 (ENSFALG00000008416) #11	KCNMB2 (ENSFALG00000008411) #13	ZMAT3 (ENSFALG00000008403) #14	PIK3CA (ENSFALG00000008395) #15	ZNF639 (ENSFALG00000027836) #18	MFN1 (ENSFALG00000008386) #19	GNB4 (ENSFALG00000008376) #20	ACTL6A (ENSFALG00000008369) #22	MRPL47 (ENSFALG00000008365) #23	NDUFB5 (ENSFALG00000025849) #24	USP13 (ENSFALG00000008348) #25	PEX5L (ENSFALG00000008333) #26	TTC14 (ENSFALG00000008319) #28	CCDC39 (ENSFALG00000008311) #29	FXR1 (ENSFALG00000008301) #32	DNAJC19 (ENSFALG00000008296) #33	SOX2 (ENSFALG00000014383) #35	ATP11B (ENSFALG00000008284)	MCCC1 (ENSFALG00000008252)	ENSFALG00000027817	ENSFALG00000024579	B3GNT5 (ENSFALG00000015298)	ENSFALG00000023180
Passeriformes_g	ANCESTRAL SPECIES	11	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000161734
Passeroidea	ANCESTRAL SPECIES	13	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676	ENSGT00940000161734	ENSGT00550000074917
Common canary	MODERN SPECIES	10	PLD1 (ENSSCAG00000012001)	FNDC3B (ENSSCAG00000012019)	GHSR (ENSSCAG00000012030)	TNFSF10 (ENSSCAG00000012032)	NCEH1 (ENSSCAG00000012047)	ECT2 (ENSSCAG00000012156)	NLGN1 (ENSSCAG00000012186) #7	NAALADL2 (ENSSCAG00000012244) #9	TBL1XR1 (ENSSCAG00000012275) #11	KCNMB2 (ENSSCAG00000012297) #13	ZMAT3 (ENSSCAG00000012302) #14	PIK3CA (ENSSCAG00000012311) #15	ZNF639 (ENSSCAG00000012318) #18	MFN1 (ENSSCAG00000012323) #19	GNB4 (ENSSCAG00000012330) #20	ACTL6A (ENSSCAG00000012338) #22	MRPL47 (ENSSCAG00000012343) #23	NDUFB5 (ENSSCAG00000012346) #24	USP13 (ENSSCAG00000012352) #25	PEX5L (ENSSCAG00000012363) #26	TTC14 (ENSSCAG00000012380) #28	CCDC39 (ENSSCAG00000012392) #29	FXR1 (ENSSCAG00000012440) #32	DNAJC19 (ENSSCAG00000012624) #33	ATP11B (ENSSCAG00000012637)	DCUN1D1 (ENSSCAG00000012652)	MCCC1 (ENSSCAG00000012658)	ENSSCAG00000012659	MCF2L2 (ENSSCAG00000012810)	B3GNT5 (ENSSCAG00000013681)	RFC4 (ENSSCAG00000013683)
Zebra finch	MODERN SPECIES	31	ENSTGUG00000018991	FNDC3B (ENSTGUG00000010824)	GHSR (ENSTGUG00000010823)	TNFSF10 (ENSTGUG00000010819)	NCEH1 (ENSTGUG00000025400)	ECT2 (ENSTGUG00000010794)	NLGN1 (ENSTGUG00000021670) #7	NAALADL2 (ENSTGUG00000010781) #9	TBL1XR1 (ENSTGUG00000010773) #11	KCNMB2 (ENSTGUG00000026184) #13	ZMAT3 (ENSTGUG00000027964) #14	PIK3CA (ENSTGUG00000010736) #15	ZNF639 (ENSTGUG00000027191) #18	MFN1 (ENSTGUG00000010693) #19	GNB4 (ENSTGUG00000021021) #20	ACTL6A (ENSTGUG00000010657) #22	MRPL47 (ENSTGUG00000010649) #23	NDUFB5 (ENSTGUG00000010639) #24	USP13 (ENSTGUG00000010622) #25	PEX5L (ENSTGUG00000010602) #26	TTC14 (ENSTGUG00000010592) #28	CCDC39 (ENSTGUG00000010586) #29	FXR1 (ENSTGUG00000010560) #32	DNAJC19 (ENSTGUG00000010557) #33	ENSTGUG00000019041	ATP11B (ENSTGUG00000010523)	DCUN1D1 (ENSTGUG00000010517)	MCCC1 (ENSTGUG00000010506)	ENSTGUG00000024117	B3GNT5 (ENSTGUG00000021356)	MCF2L2 (ENSTGUG00000010484)
Medium ground finch	MODERN SPECIES	12	PLD1 (ENSGFOG00000008326)	FNDC3B (ENSGFOG00000008069)	GHSR (ENSGFOG00000008037)	TNFSF10 (ENSGFOG00000008030)	NCEH1 (ENSGFOG00000007873)	ECT2 (ENSGFOG00000007813)	NLGN1 (ENSGFOG00000007784) #7	NAALADL2 (ENSGFOG00000007762) #9	TBL1XR1 (ENSGFOG00000007746) #11	KCNMB2 (ENSGFOG00000007709) #13	ZMAT3 (ENSGFOG00000007697) #14	PIK3CA (ENSGFOG00000007668) #15	ZNF639 (ENSGFOG00000007659) #18	MFN1 (ENSGFOG00000007632) #19	GNB4 (ENSGFOG00000007624) #20	ACTL6A (ENSGFOG00000007543) #22	MRPL47 (ENSGFOG00000007503) #23	NDUFB5 (ENSGFOG00000007487) #24	USP13 (ENSGFOG00000007465) #25	PEX5L (ENSGFOG00000007428) #26	ENSGFOG00000007366	CCDC39 (ENSGFOG00000007337) #29	FXR1 (ENSGFOG00000005246) #32	DNAJC19 (ENSGFOG00000005157) #33	SOX2 (ENSGFOG00000005149) #35	ENSGFOG00000005136	ATP11B (ENSGFOG00000005085)	DCUN1D1 (ENSGFOG00000005071)	MCCC1 (ENSGFOG00000005054)	ENSGFOG00000005046	B3GNT5 (ENSGFOG00000005034)
African ostrich	MODERN SPECIES	931												ZMAT3 (ENSSCUG00000017337) #14	PIK3CA (ENSSCUG00000017341) #15	MFN1 (ENSSCUG00000017346) #19	GNB4 (ENSSCUG00000017351) #20	ACTL6A (ENSSCUG00000017355) #22	MRPL47 (ENSSCUG00000017373) #23	NDUFB5 (ENSSCUG00000017374) #24	USP13 (ENSSCUG00000017376) #25	PEX5L (ENSSCUG00000017378) #26	TTC14 (ENSSCUG00000017384) #28	CCDC39 (ENSSCUG00000017389) #29	ENSSCUG00000017390	FXR1 (ENSSCUG00000017419) #32	ENSSCUG00000017441	DNAJC19 (ENSSCUG00000017443) #33	ATP11B (ENSSCUG00000017450)
Australian saltwater crocodile	MODERN SPECIES	30	TNFSF10 (ENSCPRG00005009508)	NCEH1 (ENSCPRG00005009516)	ECT2 (ENSCPRG00005009519)	SPATA16 (ENSCPRG00005009547)	ENSCPRG00005009577 #7	ENSCPRG00005009587 #7	NAALADL2 (ENSCPRG00005009597) #9	TBL1XR1 (ENSCPRG00005009616) #11	ENSCPRG00005009640	KCNMB2 (ENSCPRG00005009647) #13	ZMAT3 (ENSCPRG00005009651) #14	ENSCPRG00005009658 #15	ZNF639 (ENSCPRG00005009780) #18	MFN1 (ENSCPRG00005009802) #19	GNB4 (ENSCPRG00005009816) #20	ACTL6A (ENSCPRG00005010054) #22	MRPL47 (ENSCPRG00005010062) #23	NDUFB5 (ENSCPRG00005010066) #24	USP13 (ENSCPRG00005010083) #25	PEX5L (ENSCPRG00005010104) #26	TTC14 (ENSCPRG00005010137) #28	ENSCPRG00005010293	CCDC39 (ENSCPRG00005010308) #29	DNAJC19 (ENSCPRG00005010343) #33	FXR1 (ENSCPRG00005010361) #32	SOX2 (ENSCPRG00005010584) #35	ENSCPRG00005010594	ATP11B (ENSCPRG00005010622)	DCUN1D1 (ENSCPRG00005010672)	MCCC1 (ENSCPRG00005010677)	LAMP3 (ENSCPRG00005010688)
Cryptodira	ANCESTRAL SPECIES	16	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369.a	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000164015	ENSGT00940000159676
Testudinoidea	ANCESTRAL SPECIES	9	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369.a	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.n #28	ENSGT00390000013701.m #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676
Emydidae	ANCESTRAL SPECIES	3	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369.a	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.n #28	ENSGT00390000013701.m #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000161734
Three-toed box turtle	MODERN SPECIES	32	TNFSF10 (ENSTMTG00000009207)	NCEH1 (ENSTMTG00000009220)	ENSTMTG00000009230	ENSTMTG00000009279	SPATA16 (ENSTMTG00000009298)	NLGN1 (ENSTMTG00000009329) #7	NAALADL2 (ENSTMTG00000009348) #9	TBL1XR1 (ENSTMTG00000009406) #11	KCNMB2 (ENSTMTG00000009434) #13	ZMAT3 (ENSTMTG00000009458) #14	PIK3CA (ENSTMTG00000009470) #15	ENSTMTG00000009517	ZNF639 (ENSTMTG00000009549) #18	MFN1 (ENSTMTG00000009563) #19	GNB4 (ENSTMTG00000009587) #20	ACTL6A (ENSTMTG00000009615) #22	MRPL47 (ENSTMTG00000009647) #23	NDUFB5 (ENSTMTG00000009666) #24	USP13 (ENSTMTG00000009685) #25	PEX5L (ENSTMTG00000009761) #26	TTC14 (ENSTMTG00000009812) #28	CCDC39 (ENSTMTG00000009881) #29	FXR1 (ENSTMTG00000010020) #32	DNAJC19 (ENSTMTG00000010071) #33	SOX2 (ENSTMTG00000010093) #35	ATP11B (ENSTMTG00000010113)	DCUN1D1 (ENSTMTG00000010264)	MCCC1 (ENSTMTG00000010280)	ENSTMTG00000010301	MCF2L2 (ENSTMTG00000010345)	B3GNT5 (ENSTMTG00000010481)
painted turtle	MODERN SPECIES	748						NAALADL2 (ENSCPBG00000026894) #9	ENSCPBG00000026899	TBL1XR1 (ENSCPBG00000026909) #11	KCNMB2 (ENSCPBG00000026916) #13	ZMAT3 (ENSCPBG00000026917) #14	PIK3CA (ENSCPBG00000026921) #15	ENSCPBG00000026924	ZNF639 (ENSCPBG00000026927) #18	MFN1 (ENSCPBG00000026929) #19	GNB4 (ENSCPBG00000026930) #20	ACTL6A (ENSCPBG00000026932) #22	MRPL47 (ENSCPBG00000026934) #23	NDUFB5 (ENSCPBG00000026935) #24	USP13 (ENSCPBG00000026936) #25	PEX5L (ENSCPBG00000026944) #26	ENSCPBG00000026954 #28	ENSCPBG00000026955 #28	CCDC39 (ENSCPBG00000000173) #29	FXR1 (ENSCPBG00000000223) #32	DNAJC19 (ENSCPBG00000000285) #33	ATP11B (ENSCPBG00000000373)	DCUN1D1 (ENSCPBG00000000501)	MCCC1 (ENSCPBG00000000534)	LAMP3 (ENSCPBG00000000571)	MCF2L2 (ENSCPBG00000000648)	B3GNT5 (ENSCPBG00000000887)
Testudinidae	ANCESTRAL SPECIES	7	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT01030000235369.a	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.n #28	ENSGT00390000013701.m #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000154384 #33	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000159676
Goode s thornscrub tortoise	MODERN SPECIES	23	NCEH1 (ENSGEVG00005008435)	ENSGEVG00005008421	ENSGEVG00005008394	SPATA16 (ENSGEVG00005008353)	ENSGEVG00005008327 #7	NLGN1 (ENSGEVG00005008306) #7	NAALADL2 (ENSGEVG00005008241) #9	TBL1XR1 (ENSGEVG00005008179) #11	KCNMB2 (ENSGEVG00005008147) #13	ZMAT3 (ENSGEVG00005008132) #14	PIK3CA (ENSGEVG00005008110) #15	ENSGEVG00005008073	ZNF639 (ENSGEVG00005008054) #18	MFN1 (ENSGEVG00005008013) #19	GNB4 (ENSGEVG00005007979) #20	ACTL6A (ENSGEVG00005007939) #22	MRPL47 (ENSGEVG00005007908) #23	NDUFB5 (ENSGEVG00005007886) #24	USP13 (ENSGEVG00005007750) #25	PEX5L (ENSGEVG00005007677) #26	ENSGEVG00005007645 #28	ENSGEVG00005007619 #28	CCDC39 (ENSGEVG00005007473) #29	FXR1 (ENSGEVG00005007363) #32	DNAJC19 (ENSGEVG00005007338) #33	SOX2 (ENSGEVG00005007325) #35	ATP11B (ENSGEVG00005007238)	DCUN1D1 (ENSGEVG00005007193)	MCCC1 (ENSGEVG00005007168)	ENSGEVG00005007146	B3GNT5 (ENSGEVG00005007129)
Abingdon island giant tortoise	MODERN SPECIES	76								TBL1XR1 (ENSCABG00000016872) #11	KCNMB2 (ENSCABG00000016876) #13	ZMAT3 (ENSCABG00000016877) #14	PIK3CA (ENSCABG00000016963) #15	ENSCABG00000017237	ZNF639 (ENSCABG00000017240) #18	MFN1 (ENSCABG00000017278) #19	GNB4 (ENSCABG00000019060) #20	ACTL6A (ENSCABG00000019237) #22	MRPL47 (ENSCABG00000019319) #23	NDUFB5 (ENSCABG00000019321) #24	USP13 (ENSCABG00000019324) #25	PEX5L (ENSCABG00000019326) #26	TTC14 (ENSCABG00000019328) #28	CCDC39 (ENSCABG00000019333) #29	FXR1 (ENSCABG00000019346) #32	DNAJC19 (ENSCABG00000019628) #33	SOX2 (ENSCABG00000019639) #35
Chinese turtle	MODERN SPECIES	2228									KCNMB2 (ENSPSIG00000015760) #13	ZMAT3 (ENSPSIG00000014839) #14	PIK3CA (ENSPSIG00000014440) #15	ZNF639 (ENSPSIG00000014336) #18	ENSPSIG00000014320	MFN1 (ENSPSIG00000013354) #19	GNB4 (ENSPSIG00000013084) #20	ACTL6A (ENSPSIG00000011750) #22	MRPL47 (ENSPSIG00000011536) #23	NDUFB5 (ENSPSIG00000011327) #24	USP13 (ENSPSIG00000010053) #25	PEX5L (ENSPSIG00000009593) #26	TTC14 (ENSPSIG00000009489) #28	ENSPSIG00000000550	CCDC39 (ENSPSIG00000008365) #29	FXR1 (ENSPSIG00000007616) #32	DNAJC19 (ENSPSIG00000007461) #33	SOX2 (ENSPSIG00000000544) #35	ENSPSIG00000000536	ATP11B (ENSPSIG00000006570)	DCUN1D1 (ENSPSIG00000017853)	MCCC1 (ENSPSIG00000017510)	ENSPSIG00000017491
Anura	ANCESTRAL SPECIES	26	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.b #11	ENSGT00950000183039.B.b.a #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #29	ENSGT00950000183189.a.b.a #32	ENSGT00940000160614 #35	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00940000164015	ENSGT00940000161734	ENSGT00940000159676	ENSGT00550000074917
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	829																ENSLLEG00000026596 #22
Leishan spiny toad	MODERN SPECIES	7	NAALADL2 (ENSLLEG00000026863) #9	ENSLLEG00000026984	TBL1XR1 (ENSLLEG00000027031) #11	ENSLLEG00000027333	KCNMB2 (ENSLLEG00000027366) #13	ZMAT3 (ENSLLEG00000027411) #14	ENSLLEG00000027471	PIK3CA (ENSLLEG00000027506) #15	KCNMB3 (ENSLLEG00000027813) #16	ENSLLEG00000027846 #18	ENSLLEG00000027869	MFN1 (ENSLLEG00000027892) #19	GNB4 (ENSLLEG00000027982) #20	ENSLLEG00000028077	ENSLLEG00000028118 #22	ENSLLEG00000028299 #22	ENSLLEG00000028388 #23	NDUFB5 (ENSLLEG00000028412) #24	USP13 (ENSLLEG00000028479) #25	PEX5L (ENSLLEG00000028895) #26	ENSLLEG00000029002	ENSLLEG00000029013	ENSLLEG00000029020	TTC14 (ENSLLEG00000029050) #28	CCDC39 (ENSLLEG00000029259) #29	ENSLLEG00000029315	ENSLLEG00000029445 #32	ENSLLEG00000029888	ENSLLEG00000029895	ENSLLEG00000029902	ENSLLEG00000029908
Leishan spiny toad	MODERN SPECIES	7	NLGN1 (ENSLLEG00000026838) #7	NAALADL2 (ENSLLEG00000026863) #9	ENSLLEG00000026984	TBL1XR1 (ENSLLEG00000027031) #11	ENSLLEG00000027333	KCNMB2 (ENSLLEG00000027366) #13	ZMAT3 (ENSLLEG00000027411) #14	ENSLLEG00000027471	PIK3CA (ENSLLEG00000027506) #15	KCNMB3 (ENSLLEG00000027813) #16	ENSLLEG00000027846 #18	ENSLLEG00000027869	MFN1 (ENSLLEG00000027892) #19	GNB4 (ENSLLEG00000027982) #20	ENSLLEG00000028077	ENSLLEG00000028118 #22	ENSLLEG00000028299 #22	ENSLLEG00000028388 #23	NDUFB5 (ENSLLEG00000028412) #24	USP13 (ENSLLEG00000028479) #25	PEX5L (ENSLLEG00000028895) #26	ENSLLEG00000029002	ENSLLEG00000029013	ENSLLEG00000029020	TTC14 (ENSLLEG00000029050) #28	CCDC39 (ENSLLEG00000029259) #29	ENSLLEG00000029315	ENSLLEG00000029445 #32	ENSLLEG00000029888	ENSLLEG00000029895	ENSLLEG00000029902
Frog	MODERN SPECIES	5	tnfsf10 (ENSXETG00000030595)	nceh1 (ENSXETG00000038694)	ect2 (ENSXETG00000023596)	ENSXETG00000030915	ENSXETG00000044786	nlgn1 (ENSXETG00000001525) #7	naaladl2 (ENSXETG00000040453) #9	tbl1xr1 (ENSXETG00000001521) #11	kcnmb2 (ENSXETG00000037867) #13	zmat3 (ENSXETG00000007251) #14	pik3ca (ENSXETG00000007252) #15	kcnmb3 (ENSXETG00000007254) #16	znf639 (ENSXETG00000007256) #18	mfn1 (ENSXETG00000007258) #19	gnb4 (ENSXETG00000007259) #20	actl6a (ENSXETG00000007260) #22	mrpl47 (ENSXETG00000029930) #23	ndufb5 (ENSXETG00000007264) #24	usp13 (ENSXETG00000007265) #25	pex5l (ENSXETG00000032445) #26	ttc14 (ENSXETG00000019435) #28	ccdc39 (ENSXETG00000019437) #29	fxr1 (ENSXETG00000019441) #32	sox2 (ENSXETG00000036807) #35	ENSXETG00000038267	atp11b (ENSXETG00000016814)	dcun1d1 (ENSXETG00000016813)	mccc1 (ENSXETG00000016826)	lamp3 (ENSXETG00000036063)	atp13a-like (ENSXETG00000016833)	plaat1 (ENSXETG00000032952)
Coelacanth	MODERN SPECIES	333									TBL1XR1 (ENSLACG00000016986) #11	KCNMB2 (ENSLACG00000015936) #13	ZMAT3 (ENSLACG00000015780) #14	PIK3CA (ENSLACG00000015507) #15	KCNMB3 (ENSLACG00000015425) #16	MFN1 (ENSLACG00000015275) #19	GNB4 (ENSLACG00000014929) #20	ACTL6A (ENSLACG00000014797) #22	MRPL47 (ENSLACG00000014781) #23	NDUFB5 (ENSLACG00000014749) #24	USP13 (ENSLACG00000014314) #25	PEX5L (ENSLACG00000013935) #26	TTC14 (ENSLACG00000012412) #28	CCDC39 (ENSLACG00000012072) #29	FXR1 (ENSLACG00000011290) #32	DNAJC19 (ENSLACG00000011183) #33	SOX2 (ENSLACG00000006560) #35
Actinopterygii	ANCESTRAL SPECIES	10	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.a.b ##11	ENSGT00950000183039.B.b #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.b	ENSGT00940000164867	ENSGT00940000159265	ENSGT00390000001143	ENSGT00390000003197	ENSGT00940000159865	ENSGT00440000033720.b	ENSGT00950000182930.D	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b
Neopterygii	ANCESTRAL SPECIES	17	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789 #7	ENSGT01030000234598.a.b #9	ENSGT00940000153421.a.a.b ##11	ENSGT00950000183039.B.b #13	ENSGT00730000111202 #14	ENSGT00940000155531.b #15	ENSGT00950000183039.B.a #16	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.a	ENSGT00980000198724	ENSGT00940000164867.a	ENSGT00950000183070.a.a.mb.b	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00390000001143	ENSGT00390000003197	ENSGT00940000159865	ENSGT00440000033720.b
Osteoglossocephalai	ANCESTRAL SPECIES	35	ENSGT00940000163706	ENSGT00390000008296.a	ENSGT00940000159248	ENSGT00940000153617.A.a.a	ENSGT00940000175817	ENSGT00940000176289	ENSGT01030000234559.a.a.a	ENSGT00390000003420.b	ENSGT00940000165115.a	ENSGT01040000240444.A.b.a.b	ENSGT00940000159170.d	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00550000075004	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.b	ENSGT00940000164867.b	ENSGT00950000183070.a.a.mb.a	ENSGT00980000198724	ENSGT00940000164867.a	ENSGT00940000159409	ENSGT00940000159265	ENSGT00390000001143	ENSGT00390000003197	ENSGT00940000156309.A.l
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	234							ENSGT00940000175817	ENSGT00940000176289	ENSGT01030000234559.a.a.a.j	ENSGT00940000165115.b	ENSGT00440000038757	ENSGT00390000003292	ENSGT00940000156634.a	ENSGT00390000013727.d.b #19	ENSGT01000000214413.b.a.a.s.a #20	ENSGT00940000156305.k #22	ENSGT00390000009980 #24	ENSGT00940000157401.b #25	ENSGT00940000155931.b #26	ENSGT00390000000263.k	ENSGT00950000183070.a.a.mb.a	ENSGT00980000198724	ENSGT00940000164867.a	ENSGT00390000001143	ENSGT00390000003197	ENSGT00940000156309.A.l	ENSGT00440000033720.b.b	ENSGT00950000182930.C.e	ENSGT01030000234590.A.b.a.a.e	ENSGT01030000234590.A.b.b	ENSGT00940000173998
P. kingsleyae	MODERN SPECIES	360						ENSPKIG00000001378	ENSPKIG00000001355	TBXA2R (ENSPKIG00000001335)	tbxa2r (ENSPKIG00000001327)	ENSPKIG00000001307	ENSPKIG00000001230	gpank1 (ENSPKIG00000001197)	plaat1 (ENSPKIG00000001183)	ENSPKIG00000001170	gnb4b (ENSPKIG00000001141) #20	ACTL6A (ENSPKIG00000001101) #22	ndufb5 (ENSPKIG00000001082) #24	usp13 (ENSPKIG00000001020) #25	PEX5L (ENSPKIG00000000960) #26	PDE6D (ENSPKIG00000025307)	PHB2 (ENSPKIG00000025302)	ENSPKIG00000025298	ENSPKIG00000025230	ENSPKIG00000025200	ncbp2 (ENSPKIG00000025196)
Osteoglossiformes	ANCESTRAL SPECIES	210									ENSGT01030000234559.a.a.a.i	ENSGT00390000003420.b	ENSGT00940000165115.a	ENSGT01050000244814.a.a.b.b.b.a.b.g	ENSGT00550000075004	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a.t #20	ENSGT00940000156305.l #22	ENSGT00390000002837 #23	ENSGT00940000157401.a #25	ENSGT00940000155931.a #26	ENSGT00390000000263.l	ENSGT00940000159409	ENSGT00940000159265	ENSGT00940000159865	ENSGT00440000033720.b.a	ENSGT00950000182930.D	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00390000015458	ENSGT00940000155866	ENSGT01030000234590.A.b.a.a.f	ENSGT00510000046760.b.a
P. kingsleyae	MODERN SPECIES	4	ENSPKIG00000013559	ENSPKIG00000013453	dohh (ENSPKIG00000013430)	ticam1 (ENSPKIG00000013407)	ENSPKIG00000013379	ENSPKIG00000013349	ENSPKIG00000013339	PTPRS (ENSPKIG00000013251)	gipc3 (ENSPKIG00000013175)	ENSPKIG00000013010	gpr35.1 (ENSPKIG00000012964)	lim2.2 (ENSPKIG00000012942)	ftsj3 (ENSPKIG00000012838)	mfn1b (ENSPKIG00000012717) #19	ENSPKIG00000012676 #20	actl6a (ENSPKIG00000012643) #22	mrpl47 (ENSPKIG00000012608) #23	usp13 (ENSPKIG00000012531) #25	ENSPKIG00000012494	PEX5L (ENSPKIG00000012443) #26	pde6d (ENSPKIG00000012381)	ptmaa (ENSPKIG00000012342)	DLG1 (ENSPKIG00000012310)	MELTF (ENSPKIG00000012270)	ENSPKIG00000012246	si:ch211-262h13.5 (ENSPKIG00000012235)	ENSPKIG00000012202	ENSPKIG00000012168	anos1b (ENSPKIG00000012096)	hps3 (ENSPKIG00000011984)	cp (ENSPKIG00000011931)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	17	fzr1a (ENSSFOG00015016136)	haus5 (ENSSFOG00015016090)	sin3b (ENSSFOG00015016043)	FEM1A (ENSSFOG00015028310)	uhrf1 (ENSSFOG00015015944)	KDM4B (ENSSFOG00015015896)	PTPRS (ENSSFOG00015015835)	TBXA2R (ENSSFOG00015015820)	ENSSFOG00015015759	ENSSFOG00015015732	ENSSFOG00015015716	gpank1 (ENSSFOG00015024269)	plaat1 (ENSSFOG00015015703)	MFN1 (ENSSFOG00015015604) #19	GNB4 (ENSSFOG00015024251) #20	actl6a (ENSSFOG00015015503) #22	ndufb5 (ENSSFOG00015015490) #24	usp13 (ENSSFOG00015015373) #25	PEX5L (ENSSFOG00015015332) #26	PDE6D (ENSSFOG00015015323)	PHB2 (ENSSFOG00015033271)	ENSSFOG00015015286	DLG1 (ENSSFOG00015015041)	ENSSFOG00015030121	ncbp2 (ENSSFOG00015031347)	senp5 (ENSSFOG00015014962)	anos1b (ENSSFOG00015014894)	ENSSFOG00015014843	ENSSFOG00015030162	ENSSFOG00015031338	tm4sf4 (ENSSFOG00015014812)
Asian bonytongue	MODERN SPECIES	11	dhtkd1 (ENSSFOG00015023776)	nudt5 (ENSSFOG00015032457)	slc38a2 (ENSSFOG00015023763)	slc38a4 (ENSSFOG00015023756)	AMIGO2 (ENSSFOG00015023750)	PTPRS (ENSSFOG00015018310)	ENSSFOG00015018298	tbxa2r (ENSSFOG00015018272)	gipc3 (ENSSFOG00015018248)	ENSSFOG00015018196	gpr35.1 (ENSSFOG00015018172)	lim2.2 (ENSSFOG00015018152)	ftsj3 (ENSSFOG00015018053)	mfn1b (ENSSFOG00015017937) #19	GNB4 (ENSSFOG00015017901) #20	actl6a (ENSSFOG00015024452) #22	mrpl47 (ENSSFOG00015029842) #23	usp13 (ENSSFOG00015017739) #25	PEX5L (ENSSFOG00015017690) #26	pde6d (ENSSFOG00015017680)	ENSSFOG00015017668	dlg1a (ENSSFOG00015017518)	MELTF (ENSSFOG00015017465)	ENSSFOG00015017443	anos1b (ENSSFOG00015017359)	si:ch211-262h13.5 (ENSSFOG00015030412)	ENSSFOG00015017244	ENSSFOG00015017140	hps3 (ENSSFOG00015017049)	cp (ENSSFOG00015016849)	ENSSFOG00015016801
Clupeocephala	ANCESTRAL SPECIES	157			ENSGT00940000163706	ENSGT00390000008296.a	ENSGT00940000159248	ENSGT00940000153617.A.a.a	ENSGT01030000234559.a.a.a	ENSGT00390000003420.b	ENSGT00940000165115.a	ENSGT01040000240444.A.b.a.b	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.b	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00390000001143	ENSGT00390000003197	ENSGT00940000156309.A.l	ENSGT00440000033720.b	ENSGT00950000182930.D	ENSGT00950000182930.C.f
Otomorpha	ANCESTRAL SPECIES	223													ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a.q.a #20	ENSGT01000000214413.b.a.a.r #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.b.h	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00390000003197	ENSGT00460000041630	ENSGT01050000244897.a.a.b.b	ENSGT01050000244955.b.c	ENSGT00530000063816.d	ENSGT00390000003020
Clupeiformes	ANCESTRAL SPECIES	220		ENSGT00940000157395	ENSGT00390000006932	ENSGT00390000003182	ENSGT00940000158998	ENSGT00940000156750	ENSGT00530000063404.b	ENSGT00940000155899.e.a	ENSGT00390000009609	ENSGT00940000156511.b	ENSGT00940000159571	ENSGT00390000010568	ENSGT01050000244887.A.a.b	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a.r #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.b.h	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00390000003197	ENSGT00460000041630	ENSGT01050000244897.a.a.b.b	ENSGT01050000244955.b.c	ENSGT00530000063816.d	ENSGT00390000003020
Denticle herring	MODERN SPECIES	4	mfsd14a1 (ENSDCDG00000019306)	sass6 (ENSDCDG00000018471)	trmt13 (ENSDCDG00000018422)	lrrc39 (ENSDCDG00000018418)	dbt (ENSDCDG00000018335)	rtca (ENSDCDG00000018269)	cdc14ab (ENSDCDG00000018237)	GPR88 (ENSDCDG00000018225)	vcam1b (ENSDCDG00000018224)	slc30a7 (ENSDCDG00000018223)	dph5 (ENSDCDG00000018220)	s1pr1 (ENSDCDG00000018219)	ENSDCDG00000018218	mfn1b (ENSDCDG00000017984) #19	gnb4b (ENSDCDG00000017921) #20	actl6a (ENSDCDG00000017903) #22	mrpl47 (ENSDCDG00000017899) #23	ndufb5 (ENSDCDG00000017897) #24	usp13 (ENSDCDG00000014732) #25	PEX5L (ENSDCDG00000014621) #26	pde6d (ENSDCDG00000014606)	phb2a (ENSDCDG00000014589)	ENSDCDG00000014574	ptmaa (ENSDCDG00000014569)	dlg1a (ENSDCDG00000010465)	pop5 (ENSDCDG00000010160)	STOML3 (ENSDCDG00000010155)	ENSDCDG00000010142	ENSDCDG00000009825	GBE1 (ENSDCDG00000005355)	cadm2b (ENSDCDG00000005312)
Atlantic herring	MODERN SPECIES	1	sass6 (ENSCHAG00000024311)	trmt13 (ENSCHAG00000024437)	lrrc39 (ENSCHAG00000024444)	ENSCHAG00000024450	dbt (ENSCHAG00000024460)	rtca (ENSCHAG00000024507)	cdc14ab (ENSCHAG00000024541)	GPR88 (ENSCHAG00000024593)	vcam1b (ENSCHAG00000024596)	slc30a7 (ENSCHAG00000024613)	dph5 (ENSCHAG00000024662)	ENSCHAG00000024704 #19	senp5 (ENSCHAG00000025280)	s1pr1 (ENSCHAG00000025282)	GNB4 (ENSCHAG00000025285) #20	actl6a (ENSCHAG00000025293) #22	mrpl47 (ENSCHAG00000025322) #23	ndufb5 (ENSCHAG00000025329) #24	usp13 (ENSCHAG00000025342) #25	PEX5L (ENSCHAG00000025465) #26	pde6d (ENSCHAG00000025623)	phb2b (ENSCHAG00000025632)	ENSCHAG00000025637	dlg1a (ENSCHAG00000025768)	ENSCHAG00000027115	ncbp2 (ENSCHAG00000027135)	ENSCHAG00000027138	aqp12 (ENSCHAG00000027140)	ENSCHAG00000027145	PCSK9 (ENSCHAG00000027148)	USP24 (ENSCHAG00000027166)
Otophysi	ANCESTRAL SPECIES	32	ENSGT00940000157095	ENSGT00390000008285	ENSGT00390000018446.a	ENSGT00940000156166.a.i.b	ENSGT00940000153846.a.a.d	ENSGT00950000183210.g.a.a	ENSGT00390000006452.b.b.g	ENSGT00900000141090	ENSGT00390000010760.f	ENSGT01030000234579.C.k	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.b.h	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00940000155212.ab.b.a	ENSGT00390000005717.t	ENSGT00940000164897.a.a
Characiphysae	ANCESTRAL SPECIES	2	ENSGT00940000157095	ENSGT00390000008285	ENSGT00390000018446.a	ENSGT00940000156166.a.i.b	ENSGT00940000153846.a.a.d	ENSGT00950000183210.g.a.a	ENSGT00390000006452.b.b.g	ENSGT00900000141090	ENSGT00390000010760.f	ENSGT01030000234579.C.k	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.b.h	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00940000156968	ENSGT00940000156262	ENSGT00940000155212.ab.b.a	ENSGT00390000005717.t	ENSGT00940000164897.a.a	ENSGT00410000025556.a.b
Channel catfish	MODERN SPECIES	2	tomm70 (ENSIPUG00000010157)	c11h1orf146 (ENSIPUG00000010133)	glmnb (ENSIPUG00000010098)	gfi1ab (ENSIPUG00000010071)	evi5 (ENSIPUG00000009873)	rpl5b (ENSIPUG00000009689)	DIPK1A (ENSIPUG00000009639)	zbtb11 (ENSIPUG00000009604)	dpt (ENSIPUG00000009582)	atp1b1a (ENSIPUG00000009526)	nme7 (ENSIPUG00000009418)	zgc:172121 (ENSIPUG00000009391)	bivm (ENSIPUG00000009377)	si:ch211-201h21.5 (ENSIPUG00000009356)	tmem131 (ENSIPUG00000009232)	ACTL6A (ENSIPUG00000009096) #22	mrpl47 (ENSIPUG00000009200) #23	ndufb5 (ENSIPUG00000009024) #24	usp13 (ENSIPUG00000008925) #25	pex5l (ENSIPUG00000008840) #26	PDE6D (ENSIPUG00000008807)	ENSIPUG00000008784	ptmaa (ENSIPUG00000008760)	dlg1a (ENSIPUG00000008544)	MFI2 (ENSIPUG00000008433)	lrrc40 (ENSIPUG00000008369)	LRRC7 (ENSIPUG00000008103)	shroom2 (ENSIPUG00000008031)	ENSIPUG00000008014	CLDN22 (ENSIPUG00000008005)	wwc3 (ENSIPUG00000007911)
Characiphysae_b	ANCESTRAL SPECIES		ENSGT00940000157095	ENSGT00390000008285	ENSGT00390000018446.a	ENSGT00940000156166.a.i.b	ENSGT00940000153846.a.a.d	ENSGT00950000183210.g.a.a	ENSGT00390000006452.b.b.g	ENSGT00900000141090	ENSGT00390000010760.f	ENSGT01030000234579.C.k	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.b.h	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00940000156968	ENSGT00940000156262	ENSGT00940000155212.ab.b.a	ENSGT00390000005717.t	ENSGT00940000164897.a.a	ENSGT00410000025556.a.b
Electric eel	MODERN SPECIES	205											nme7 (ENSEEEG00000015806)	zgc:172121 (ENSEEEG00000015794)	BIVM (ENSEEEG00000015792)	si:ch211-201h21.5 (ENSEEEG00000015791)	TMEM131 (ENSEEEG00000015780)	actl6a (ENSEEEG00000015758) #22	mrpl47 (ENSEEEG00000015753) #23	ndufb5 (ENSEEEG00000015751) #24	usp13 (ENSEEEG00000015531) #25	PEX5L (ENSEEEG00000015519) #26	pde6d (ENSEEEG00000015512)	phb2b (ENSEEEG00000015360)	ENSEEEG00000015355	dlg1a (ENSEEEG00000015312)	ENSEEEG00000015295	lrrc40 (ENSEEEG00000015284)	ENSEEEG00000015280	LRRC7 (ENSEEEG00000015270)	ENSEEEG00000015269	ENSEEEG00000015267	ENSEEEG00000015265
Characoidei	ANCESTRAL SPECIES		ENSGT00940000157095	ENSGT00390000008285	ENSGT00390000018446.a	ENSGT00940000156166.a.i.b	ENSGT00940000153846.a.a.d	ENSGT00950000183210.g.a.a	ENSGT00390000006452.b.b.g	ENSGT00900000141090	ENSGT00390000010760.f	ENSGT01030000234579.C.k	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.b.h	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00940000156968	ENSGT00940000156262	ENSGT00940000155212.ab.b.a	ENSGT00390000005717.t	ENSGT00940000164897.a.a	ENSGT00410000025556.a.b
Red-bellied piranha	MODERN SPECIES	54	tomm70a (ENSPNAG00000027449)	C1orf146 (ENSPNAG00000006150)	glmnb (ENSPNAG00000027342)	gfi1ab (ENSPNAG00000027258)	EVI5 (ENSPNAG00000027233)	rpl5b (ENSPNAG00000004187)	DIPK1A (ENSPNAG00000027122)	zbtb11 (ENSPNAG00000027087)	dpt (ENSPNAG00000027075)	atp1b1a (ENSPNAG00000027045)	nme7 (ENSPNAG00000005268)	zgc:172121 (ENSPNAG00000005724)	BIVM (ENSPNAG00000026906)	si:ch211-201h21.5 (ENSPNAG00000005032)	TMEM131 (ENSPNAG00000026787)	actl6a (ENSPNAG00000026758) #22	mrpl47 (ENSPNAG00000026692) #23	ndufb5 (ENSPNAG00000007145) #24	usp13 (ENSPNAG00000026639) #25	PEX5L (ENSPNAG00000026476) #26	pde6d (ENSPNAG00000026438)	phb2b (ENSPNAG00000004048)	ENSPNAG00000026360	ptmaa (ENSPNAG00000026323)	dlg1a (ENSPNAG00000026060)	ENSPNAG00000025929	lrrc40 (ENSPNAG00000025844)	LRRC7 (ENSPNAG00000005806)	SHROOM2 (ENSPNAG00000025506)	ENSPNAG00000025474	cldn33b (ENSPNAG00000025451)
Mexicana tetra	MODERN SPECIES	171	gfi1ab (ENSAMXG00000039600)	ENSAMXG00000038279	EVI5 (ENSAMXG00000004833)	rpl5b (ENSAMXG00000004832)	DIPK1A (ENSAMXG00000044089)	zbtb11 (ENSAMXG00000011813)	dpt (ENSAMXG00000042958)	atp1b1a (ENSAMXG00000036612)	ENSAMXG00000034041	ENSAMXG00000038001	nme7 (ENSAMXG00000011837)	zgc:172121 (ENSAMXG00000011842)	BIVM (ENSAMXG00000011848)	si:ch211-201h21.5 (ENSAMXG00000035927)	TMEM131 (ENSAMXG00000011864)	actl6a (ENSAMXG00000011893) #22	mrpl47 (ENSAMXG00000011888) #23	ndufb5 (ENSAMXG00000037596) #24	usp13 (ENSAMXG00000011904) #25	ENSAMXG00000034911	ENSAMXG00000029679	PEX5L (ENSAMXG00000011906) #26	ENSAMXG00000034283	rhebl1 (ENSAMXG00000037368)	ENSAMXG00000036877	STK4 (ENSAMXG00000011183)	KCNS1 (ENSAMXG00000040044)	ENSAMXG00000025434	ENSAMXG00000038319	ENSAMXG00000025433	or90e2 (ENSAMXG00000011167)
Cyprinoidei	ANCESTRAL SPECIES	2	ENSGT00940000157095	ENSGT00390000008285	ENSGT00390000018446.a	ENSGT00940000156166.a.i.b	ENSGT00940000153846.a.a.d	ENSGT00950000183210.g.a.a	ENSGT00390000006452.b.b.g	ENSGT00900000141090	ENSGT00390000010760.f	ENSGT01030000234579.C.k	ENSGT00940000158946	ENSGT00510000049619	ENSGT00510000048601.a	ENSGT00940000166460	ENSGT00530000063614.a.a	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.b.h	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00940000155212.ab.b.a	ENSGT00390000005717.t	ENSGT00940000164897.a.a
Zebrafish	MODERN SPECIES	21	tbc1d23 (ENSDARG00000044357)	tomm70a (ENSDARG00000029639)	glmnb (ENSDARG00000010958)	gfi1ab (ENSDARG00000044457)	EVI5 (ENSDARG00000070839)	rpl5b (ENSDARG00000015862)	DIPK1A (ENSDARG00000061362)	zbtb11 (ENSDARG00000017886)	dpt (ENSDARG00000056178)	atp1b1a (ENSDARG00000013144)	nme7 (ENSDARG00000056193)	zgc:172121 (ENSDARG00000034430)	BIVM (ENSDARG00000061409)	si:ch211-201h21.5 (ENSDARG00000056203)	TMEM131 (ENSDARG00000056259)	actl6a (ENSDARG00000070828) #22	mrpl47 (ENSDARG00000075743) #23	ndufb5 (ENSDARG00000070824) #24	usp13 (ENSDARG00000079198) #25	PEX5L (ENSDARG00000022518) #26	pde6d (ENSDARG00000074892)	phb2b (ENSDARG00000017728)	ptmaa (ENSDARG00000021113)	dlg1a (ENSDARG00000009677)	MELTF (ENSDARG00000075159)	lrrc40 (ENSDARG00000017708)	LRRC7 (ENSDARG00000079670)	ENSDARG00000076416	ENSDARG00000087805	cldn33b (ENSDARG00000015964)	wwc3 (ENSDARG00000061654)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	41	ENSGT00940000157095.c	ENSGT00390000008285.c	ENSGT00390000018446.a.b	ENSGT00940000156166.a.i.b.c.a	ENSGT00940000153846.a.a.d.b	ENSGT00950000183210.g.a.a.a	ENSGT00390000006452.b.b.g.a	ENSGT00900000141090.n	ENSGT00390000010760.f.d	ENSGT01030000234579.C.k.a.a	ENSGT00940000158946.c	ENSGT00510000049619.b	ENSGT00510000048601.a.m	ENSGT00940000166460.d	ENSGT00530000063614.a.a.xb	ENSGT00940000156305.m #22	ENSGT00390000009980.g.b #24	ENSGT00940000157401.d #25	ENSGT00940000155931.a.a #26	ENSGT00390000000263.i.a.a	ENSGT00950000183070.a.a.mb.b.h.b	ENSGT00980000198724	ENSGT00940000164867.b.t	ENSGT00940000159265.b	ENSGT00940000156968.m	ENSGT00940000156262.x	ENSGT00940000155212.ab.b.a.e	ENSGT00390000005717.t.c	ENSGT00940000164897.a.a.b	ENSGT00410000025556.a.b.a	ENSGT00530000063790.a.a.b
Goldfish	MODERN SPECIES	24	tomm70a (ENSCARG00000067955)	C1orf146 (ENSCARG00000067925)	glmnb (ENSCARG00000067898)	gfi1ab (ENSCARG00000067884)	EVI5 (ENSCARG00000067652)	rpl5b (ENSCARG00000067626)	DIPK1A (ENSCARG00000067616)	zbtb11 (ENSCARG00000067542)	dpt (ENSCARG00000067530)	atp1b1a (ENSCARG00000067515)	nme7 (ENSCARG00000067427)	zgc:172121 (ENSCARG00000067403)	BIVM (ENSCARG00000067375)	si:ch211-201h21.5 (ENSCARG00000067367)	TMEM131 (ENSCARG00000067064)	ACTL6A (ENSCARG00000066963) #22	ndufb5 (ENSCARG00000066950) #24	usp13 (ENSCARG00000066836) #25	PEX5L (ENSCARG00000066782) #26	pde6d (ENSCARG00000066742)	phb2b (ENSCARG00000066629)	ENSCARG00000066606	dlg1a (ENSCARG00000061653)	ENSCARG00000061347	LRRC7 (ENSCARG00000059223)	SHROOM2 (ENSCARG00000059073)	cldn33b (ENSCARG00000059055)	wwc3 (ENSCARG00000059019)	lurap1 (ENSCARG00000059010)	TTC22 (ENSCARG00000058991)	ENSCARG00000058958
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	12	ENSGT00390000000191.l.b	ENSGT00940000157095.d	ENSGT00390000008285.d	ENSGT00390000018446.a.a	ENSGT00940000156166.a.i.b.d	ENSGT00940000153846.a.a.d.a	ENSGT00950000183210.g.a.a.b	ENSGT00390000006452.b.b.g.b	ENSGT00390000010760.f.c	ENSGT01030000234579.C.k.b	ENSGT00940000158946.d	ENSGT00510000049619.a	ENSGT00510000048601.a.n	ENSGT00940000166460.c	ENSGT00530000063614.a.a.wb	ENSGT00940000156305.n.a #22	ENSGT00390000002837 #23	ENSGT00390000009980.g.a #24	ENSGT00940000157401.c #25	ENSGT00940000155931.a.b #26	ENSGT00390000000263.j	ENSGT00950000183070.a.a.mb.b.h.a	ENSGT00940000164867.b.u	ENSGT00940000159265.a	ENSGT00940000156968.n	ENSGT00940000156262.w.b	ENSGT00940000155212.ab.b.a.f	ENSGT00390000005717.t.d	ENSGT00940000164897.a.a.a	ENSGT00410000025556.a.b.b	ENSGT00530000063790.a.a.a
Goldfish	MODERN SPECIES	46	tp63 (ENSCARG00000020523)	tbc1d23 (ENSCARG00000023010)	ENSCARG00000023812	gfi1ab (ENSCARG00000023817)	EVI5 (ENSCARG00000023843)	rpl5b (ENSCARG00000024020)	DIPK1A (ENSCARG00000024043)	ENSCARG00000024130	TMEM131 (ENSCARG00000024215)	dpt (ENSCARG00000026349)	atp1b1a (ENSCARG00000026358)	nme7 (ENSCARG00000000194)	zgc:172121 (ENSCARG00000000230)	BIVM (ENSCARG00000000259)	si:ch211-201h21.5 (ENSCARG00000000279)	actl6a (ENSCARG00000000347) #22	mrpl47 (ENSCARG00000000396) #23	ndufb5 (ENSCARG00000000403) #24	usp13 (ENSCARG00000000499) #25	PEX5L (ENSCARG00000000856) #26	ENSCARG00000000870	pde6d (ENSCARG00000000879)	phb2b (ENSCARG00000000905)	ENSCARG00000000944	dlg1a (ENSCARG00000000979)	ENSCARG00000001054	lrrc40 (ENSCARG00000001067)	LRRC7 (ENSCARG00000001120)	ENSCARG00000001316	SHROOM2 (ENSCARG00000001330)	ENSCARG00000001355
Cyprininae_a	ANCESTRAL SPECIES	23	ENSGT00390000018446.a.a	ENSGT00940000156166.a.i.b.d	ENSGT00940000153846.a.a.d.a	ENSGT00950000183210.g.a.a.b	ENSGT00390000006452.b.b.g.b	ENSGT00900000141090.n.b	ENSGT00390000010760.f.c	ENSGT01030000234579.C.k.b	ENSGT00940000166950	ENSGT01030000234579.C.k.a.b	ENSGT00940000158946.d	ENSGT00510000049619.a	ENSGT00510000048601.a.n	ENSGT00940000166460.c	ENSGT00530000063614.a.a.wb	ENSGT00940000156305.n.a #22	ENSGT00390000002837 #23	ENSGT00390000009980.g.a #24	ENSGT00940000157401.c #25	ENSGT00940000155931.a.b #26	ENSGT00390000000263.j	ENSGT00950000183070.a.a.mb.b.h.a	ENSGT00940000164867.b.u	ENSGT00940000159265.a	ENSGT00940000156968.n	ENSGT00940000156262.w.b	ENSGT00940000155212.ab.b.a.f	ENSGT00390000005717.t.d	ENSGT00940000164897.a.a.a	ENSGT00410000025556.a.b.b	ENSGT00530000063790.a.a.a
Common carp reference	MODERN SPECIES	10	tomm70a (ENSCCRG00000011556)	ENSCCRG00000073892	glmnb (ENSCCRG00000024676)	gfi1ab (ENSCCRG00000021712)	EVI5 (ENSCCRG00000013487)	rpl5b (ENSCCRG00000029284)	DIPK1A (ENSCCRG00000029301)	zbtb11 (ENSCCRG00000007686)	dpt (ENSCCRG00000048884)	atp1b1a (ENSCCRG00000067632)	ENSCCRG00000048875	zgc:172121 (ENSCCRG00000080287)	ENSCCRG00000048896	si:ch211-201h21.5 (ENSCCRG00000048894)	ENSCCRG00000048890	actl6a (ENSCCRG00000024746) #22	mrpl47 (ENSCCRG00000024741) #23	ndufb5 (ENSCCRG00000024735) #24	usp13 (ENSCCRG00000081978) #25	PEX5L (ENSCCRG00000025069) #26	pde6d (ENSCCRG00000022653)	phb2b (ENSCCRG00000022636)	dlg1a (ENSCCRG00000031528)	ENSCCRG00000069427	lrrc40 (ENSCCRG00000023944)	ENSCCRG00000022462	SHROOM2 (ENSCCRG00000030510)	ENSCCRG00000071672	cldn33b (ENSCCRG00000072149)	wwc3 (ENSCCRG00000022000)	lurap1 (ENSCCRG00000023318)
Golden-line barbel	MODERN SPECIES	130	tp63 (ENSSGRG00000018787)	tbc1d23 (ENSSGRG00000018242)	tomm70a (ENSSGRG00000017897)	glmnb (ENSSGRG00000017896)	EVI5 (ENSSGRG00000017878)	rpl5b (ENSSGRG00000017874)	DIPK1A (ENSSGRG00000017857)	zbtb11 (ENSSGRG00000017854)	dpt (ENSSGRG00000017853)	atp1b1a (ENSSGRG00000017850)	nme7 (ENSSGRG00000017833)	zgc:172121 (ENSSGRG00000017832)	si:ch211-201h21.5 (ENSSGRG00000017826)	BIVM (ENSSGRG00000017816)	TMEM131 (ENSSGRG00000017812)	actl6a (ENSSGRG00000017444) #22	mrpl47 (ENSSGRG00000017432) #23	ndufb5 (ENSSGRG00000017425) #24	usp13 (ENSSGRG00000017413) #25	PEX5L (ENSSGRG00000017405) #26	pde6d (ENSSGRG00000017400)	phb2b (ENSSGRG00000017392)	ptmaa (ENSSGRG00000017391)	dlg1a (ENSSGRG00000015001)	MELTF (ENSSGRG00000014988)	lrrc40 (ENSSGRG00000014843)	ENSSGRG00000014842	ENSSGRG00000014837	ENSSGRG00000014832	ENSSGRG00000014830	cldn33b (ENSSGRG00000014829)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000156305.n.b #22
Cyprininae_a	ANCESTRAL SPECIES	10	ENSGT00940000157095.c	ENSGT00390000008285.c	ENSGT00390000018446.a.b	ENSGT00940000156166.a.i.b.c.a	ENSGT00940000153846.a.a.d.b	ENSGT00950000183210.g.a.a.a	ENSGT00390000006452.b.b.g.a	ENSGT00900000141090.n.a	ENSGT00390000010760.f.d	ENSGT01030000234579.C.k.a.a	ENSGT00940000158946.c	ENSGT00510000049619.b	ENSGT00510000048601.a.m	ENSGT00940000166460.d	ENSGT00530000063614.a.a.xb	ENSGT00940000156305.n.b #22	ENSGT00390000009980.g.b #24	ENSGT00940000157401.d #25	ENSGT00940000155931.a.a #26	ENSGT00390000000263.i.a.a	ENSGT00950000183070.a.a.mb.b.h.b	ENSGT00980000198724	ENSGT00940000164867.b.t	ENSGT00940000159265.b	ENSGT00940000156968.m	ENSGT00940000156262.x	ENSGT00940000155212.ab.b.a.e	ENSGT00390000005717.t.c	ENSGT00940000164897.a.a.b	ENSGT00410000025556.a.b.a	ENSGT00530000063790.a.a.b
Golden-line barbel	MODERN SPECIES	351	ENSSGRG00000047953	vldlr (ENSSGRG00000046000)	ENSSGRG00000045986	ENSSGRG00000045985	spp1 (ENSSGRG00000045984)	ENSSGRG00000045982	CLDN23 (ENSSGRG00000045981)	cldn23.1 (ENSSGRG00000045980)	ENSSGRG00000045978	ENSSGRG00000045974	dpt (ENSSGRG00000045971)	atp1b1a (ENSSGRG00000045970)	nme7 (ENSSGRG00000045902)	zgc:172121 (ENSSGRG00000045898)	TMEM131 (ENSSGRG00000045544)	actl6a (ENSSGRG00000045146) #22	mrpl47 (ENSSGRG00000045138) #23	usp13 (ENSSGRG00000045083) #25	PEX5L (ENSSGRG00000045080) #26
Common carp reference	MODERN SPECIES	16	tbc1d23 (ENSCCRG00000011137)	tomm70a (ENSCCRG00000068468)	ENSCCRG00000013474	glmnb (ENSCCRG00000013476)	EVI5 (ENSCCRG00000065334)	rpl5b (ENSCCRG00000029305)	DIPK1A (ENSCCRG00000060017)	zbtb11 (ENSCCRG00000029272)	nme7 (ENSCCRG00000029218)	dpt (ENSCCRG00000082064)	atp1b1a (ENSCCRG00000061614)	zgc:172121 (ENSCCRG00000061445)	ENSCCRG00000048872	si:ch211-201h21.5 (ENSCCRG00000048868)	ENSCCRG00000047419	actl6a (ENSCCRG00000036950) #22	ndufb5 (ENSCCRG00000061361) #24	usp13 (ENSCCRG00000024629) #25	PEX5L (ENSCCRG00000064819) #26	pde6d (ENSCCRG00000070951)	phb2b (ENSCCRG00000037333)	ptmaa (ENSCCRG00000080418)	dlg1a (ENSCCRG00000037322)	ENSCCRG00000023992	ENSCCRG00000051679	lrrc40 (ENSCCRG00000068853)	SHROOM2 (ENSCCRG00000000133)	ENSCCRG00000069041	cldn33b (ENSCCRG00000053773)	wwc3 (ENSCCRG00000082360)	lurap1 (ENSCCRG00000022178)
Euteleosteomorpha	ANCESTRAL SPECIES	268					ENSGT00390000008296.a	ENSGT00940000159248	ENSGT00940000153617.A.a.a	ENSGT01030000234559.a.a.a	ENSGT00390000003420.b	ENSGT00940000165115.a	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26
Protacanthopterygii	ANCESTRAL SPECIES	47	ENSGT00940000162953	ENSGT00940000159619.a	ENSGT00550000074851	ENSGT00390000008296.a	ENSGT00940000159248	ENSGT00940000153617.A.a.a	ENSGT01030000234559.a.a.a	ENSGT00390000003420.b	ENSGT00940000165115.a	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00940000159080	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000174617	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00940000156389.a	ENSGT00390000004757	ENSGT00390000007965	ENSGT00940000154942.e.b #30	ENSGT00940000153664.B.q.b.b.b	ENSGT00940000160465.k.a	ENSGT00940000165727.e	ENSGT00940000165727.f
Northern pike	MODERN SPECIES	7	thop1 (ENSELUG00000004006)	ENSELUG00000004047	zgc:113223 (ENSELUG00000004081)	reep6 (ENSELUG00000004111)	ENSELUG00000024897	APC2 (ENSELUG00000004194)	DIRAS1 (ENSELUG00000004246)	gng7 (ENSELUG00000004261)	gadd45ba (ENSELUG00000001451)	CARTPT (ENSELUG00000004295)	MAP1S (ENSELUG00000004317)	ENSELUG00000004360	palm1a (ENSELUG00000027933)	mfn1b (ENSELUG00000004472) #19	gnb4b (ENSELUG00000004506) #20	actl6a (ENSELUG00000004543) #22	mrpl47 (ENSELUG00000004619) #23	ndufb5 (ENSELUG00000004635) #24	usp13 (ENSELUG00000004755) #25	PEX5L (ENSELUG00000004843) #26	ENSELUG00000034599	ENSELUG00000034293	htr2b (ENSELUG00000004888)	psmd1 (ENSELUG00000004936)	acap2b (ENSELUG00000004971)	ppp1r2 (ENSELUG00000028389)	ANKUB1 (ENSELUG00000005022)	rnf13 (ENSELUG00000005076) #30	PROF2 (ENSELUG00000005099)	TSC22D2 (ENSELUG00000005110)	ENSELUG00000005124
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	41	ENSGT00940000166731.a	ENSGT00940000161826.A	ENSGT00940000164427.a.b.m.b	ENSGT00940000159619.a.c	ENSGT00550000074851.e	ENSGT00390000008296.a.r	ENSGT00940000159248.a	ENSGT00940000153617.A.a.a.k.a	ENSGT01030000234559.a.a.a.h	ENSGT00940000165115.a.a	ENSGT01050000244814.a.a.b.b.b.a.b.c	ENSGT00550000075004.e.b	ENSGT00940000156634.a.d	ENSGT00390000013727.d.a.d #19	ENSGT01000000214413.b.a.a.o #20	ENSGT00940000156305.o.a #22	ENSGT00390000002837.b #23	ENSGT00390000009980.b #24	ENSGT00940000157401.f #25	ENSGT00940000155931.a.d #26
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00940000166731.a	ENSGT00940000161826.A	ENSGT00940000164427.a.b.m.b	ENSGT00940000159619.a.c	ENSGT00550000074851.e	ENSGT00390000008296.a.r	ENSGT00940000159248.a	ENSGT00940000153617.A.a.a.k.a	ENSGT01030000234559.a.a.a.h	ENSGT00940000165115.a.a	ENSGT01050000244814.a.a.b.b.b.a.b.c	ENSGT00550000075004.e.b	ENSGT00940000156634.a.d	ENSGT00390000013727.d.a.d #19	ENSGT01000000214413.b.a.a.o #20	ENSGT00940000156305.o.a #22	ENSGT00390000002837.b #23	ENSGT00390000009980.b #24	ENSGT00940000157401.f #25	ENSGT00940000155931.a.d #26	ENSGT01050000244937.a.b.b.j	ENSGT00940000153386.A.n	ENSGT00940000156389.a.e	ENSGT00390000004757.c.b	ENSGT00940000154942.e.a #30	ENSGT00940000153664.B.q.b.b.b.a.a	ENSGT00940000160465.k.a.a	ENSGT00940000165727.e.b	ENSGT00950000182975.a.a.a.a.a.c	ENSGT00940000158639.b	ENSGT00940000156834.f
Salmo	ANCESTRAL SPECIES	14	ENSGT01030000234774.d	ENSGT00940000166731.a	ENSGT00940000164427.a.b.m.b	ENSGT00940000159619.a.c	ENSGT00550000074851.e	ENSGT00390000008296.a.r	ENSGT00940000159248.a	ENSGT00940000153617.A.a.a.k.a	ENSGT01030000234559.a.a.a.h	ENSGT00940000165115.a.a	ENSGT01050000244814.a.a.b.b.b.a.b.c	ENSGT00550000075004.e.b	ENSGT00940000156634.a.d	ENSGT00390000013727.d.a.d #19	ENSGT01000000214413.b.a.a.o #20	ENSGT00940000156305.o.a #22	ENSGT00390000002837.b #23	ENSGT00390000009980.b #24	ENSGT00940000157401.f #25	ENSGT00940000155931.a.d #26	ENSGT01050000244937.a.b.b.j	ENSGT00940000153386.A.n	ENSGT00940000156389.a.e	ENSGT00390000004757.c.b	ENSGT00940000154942.e.a #30	ENSGT00940000153664.B.q.b.b.b.a.a	ENSGT00940000160465.k.a.a	ENSGT00940000165727.e.b	ENSGT00950000182975.a.a.a.a.a.c	ENSGT00940000158639.b	ENSGT00940000156834.f
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000074818	ENSSSAG00000074814	ENSSSAG00000086843	ENSSSAG00000091275	HES1 (ENSSSAG00000074809)	ENSSSAG00000073094	uhrf1 (ENSSSAG00000072643)	kdm4b (ENSSSAG00000072610)	ENSSSAG00000006311	tbxa2r (ENSSSAG00000118549)	ENSSSAG00000004982	lim2.2 (ENSSSAG00000004973)	ENSSSAG00000092575	MFN1 (ENSSSAG00000077478) #19	GNB4 (ENSSSAG00000002929) #20	actl6a (ENSSSAG00000002898) #22	RM47 (ENSSSAG00000002845) #23	ndufb5 (ENSSSAG00000002836) #24	usp13 (ENSSSAG00000002427) #25	PEX5L (ENSSSAG00000080611) #26	htr2b (ENSSSAG00000080601)	psmd1 (ENSSSAG00000108879)	acap2b (ENSSSAG00000079971)	ENSSSAG00000079833	ppp1r2 (ENSSSAG00000079830)	RNF13 (ENSSSAG00000079821) #30	PFN2 (ENSSSAG00000100316)	ENSSSAG00000111931	TSC22D2 (ENSSSAG00000104960)	ENSSSAG00000079799	camsap2a (ENSSSAG00000079751)
River trout	MODERN SPECIES	14	ENSSTUG00000006168	ENSSTUG00000006157	ENSSTUG00000006153	her6 (ENSSTUG00000006149)	opa1 (ENSSTUG00000005585)	uhrf1 (ENSSTUG00000004732)	kdm4b (ENSSTUG00000004639)	PTPRS (ENSSTUG00000002586)	tbxa2r (ENSSTUG00000002480)	ENSSTUG00000002417	lim2.2 (ENSSTUG00000002408)	ENSSTUG00000030533	plaat1 (ENSSTUG00000030525)	mfn1b (ENSSTUG00000027653) #19	GNB4 (ENSSTUG00000027561) #20	actl6a (ENSSTUG00000027355) #22	mrpl47 (ENSSTUG00000027300) #23	ndufb5 (ENSSTUG00000027158) #24	ENSSTUG00000027146	usp13 (ENSSTUG00000026971) #25	PEX5L (ENSSTUG00000026898) #26	ENSSTUG00000026894	htr2b (ENSSTUG00000026892)	psmd1 (ENSSTUG00000026660)	acap2b (ENSSTUG00000020312)	ppp1r2 (ENSSTUG00000020127)	rnf13 (ENSSTUG00000020069) #30	pfn2a (ENSSTUG00000020043)	ENSSTUG00000020002	ENSSTUG00000019724	camsap2a (ENSSTUG00000019655)
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT01030000234774.d	ENSGT00940000166731.a	ENSGT00940000161826.A	ENSGT00940000159619.a.c	ENSGT00550000074851.e	ENSGT00390000008296.a.r	ENSGT00940000159248.a	ENSGT00940000153617.A.a.a.k.a	ENSGT01030000234559.a.a.a.h	ENSGT00940000165115.a.a	ENSGT01050000244814.a.a.b.b.b.a.b.c	ENSGT00550000075004.e.b	ENSGT00940000156634.a.d	ENSGT00390000013727.d.a.d #19	ENSGT01000000214413.b.a.a.o #20	ENSGT00940000156305.o.a #22	ENSGT00390000002837.b #23	ENSGT00390000009980.b #24	ENSGT00940000157401.f #25	ENSGT00940000155931.a.d #26	ENSGT00940000153386.A.n.b	ENSGT01050000244937.a.b.b.j	ENSGT00940000153386.A.n.a.b	ENSGT00940000156389.a.e	ENSGT00390000004757.c.b	ENSGT00940000154942.e.a #30	ENSGT00940000153664.B.q.b.b.b.a.a	ENSGT00940000160465.k.a.a	ENSGT00940000165727.e.b	ENSGT00950000182975.a.a.a.a.a.c	ENSGT00940000156834.f
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT01030000234774.d	ENSGT00940000166731.a	ENSGT00940000161826.A.e	ENSGT00940000159619.a.c	ENSGT00550000074851.e	ENSGT00390000008296.a.r	ENSGT00940000159248.a	ENSGT00940000153617.A.a.a.k.a	ENSGT01030000234559.a.a.a.h	ENSGT00940000165115.a.a	ENSGT01050000244814.a.a.b.b.b.a.b.c	ENSGT01010000229418	ENSGT00940000156634.a.d	ENSGT00390000013727.d.a.d #19	ENSGT01000000214413.b.a.a.o #20	ENSGT00940000156305.o.a #22	ENSGT00390000002837.b #23	ENSGT00390000009980.b #24	ENSGT00950000185180	ENSGT00940000157401.f #25	ENSGT00940000155931.a.d #26	ENSGT00940000153386.A.n.b	ENSGT01050000244937.a.b.b.j	ENSGT00940000156389.a.e	ENSGT00390000004757.c.b	ENSGT00940000154942.e.a #30	ENSGT00940000153664.B.q.b.b.b.a.a	ENSGT00940000160465.k.a.a	ENSGT00940000159144.C.ab.a	ENSGT00940000165727.e.b	ENSGT00950000182975.a.a.a.a.a.c
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005047522	ENSOTSG00005047520	her6 (ENSOTSG00005047519)	opa1 (ENSOTSG00005047288)	uhrf1 (ENSOTSG00005047235)	ENSOTSG00005047232	PTPRS (ENSOTSG00005030281)	tbxa2r (ENSOTSG00005030147)	ENSOTSG00005030145	ENSOTSG00005030142	lim2.2 (ENSOTSG00005030136)	ENSOTSG00005030134	plaat1 (ENSOTSG00005030132)	mfn1b (ENSOTSG00005029446) #19	gnb4b (ENSOTSG00005029426) #20	actl6a (ENSOTSG00005029404) #22	mrpl47 (ENSOTSG00005029400) #23	ndufb5 (ENSOTSG00005029398) #24	ENSOTSG00005029397	usp13 (ENSOTSG00005029076) #25	PEX5L (ENSOTSG00005029060) #26	psmd1 (ENSOTSG00005028626)	HTR2B (ENSOTSG00005028622)	kif14 (ENSOTSG00005028620)	ENSOTSG00005028619	nr5a2 (ENSOTSG00005028618)	ENSOTSG00005028616	nppc (ENSOTSG00005028615)	METTL24 (ENSOTSG00005028614)	slc22a16 (ENSOTSG00005028613)	usta (ENSOTSG00005028612)
Coho salmon	MODERN SPECIES	4	ENSOKIG00005012443	OPA1 (ENSOKIG00005012602)	uhrf1 (ENSOKIG00005015452)	kdm4b (ENSOKIG00005015675)	ENSOKIG00005015834	ENSOKIG00005015838	ENSOKIG00005015850	PTPRS (ENSOKIG00005015879)	tbxa2r (ENSOKIG00005016155)	ENSOKIG00005016169	lim2.2 (ENSOKIG00005016184)	ENSOKIG00005016194	plaat1 (ENSOKIG00005016203)	mfn1b (ENSOKIG00005016363) #19	gnb4b (ENSOKIG00005019604) #20	actl6a (ENSOKIG00005019695) #22	mrpl47 (ENSOKIG00005019762) #23	usp13 (ENSOKIG00005019782) #25	PEX5L (ENSOKIG00005019908) #26	psmd1 (ENSOKIG00005019959)	htr2b (ENSOKIG00005021078)	acap2b (ENSOKIG00005021199)	ppp1r2 (ENSOKIG00005022921)	ENSOKIG00005022932	RNF13 (ENSOKIG00005022946) #30	ENSOKIG00005022984	PFN2 (ENSOKIG00005003812)	TSC22D2 (ENSOKIG00005003828)	ENSOKIG00005003882	camsap2a (ENSOKIG00005004122)	kif14 (ENSOKIG00005004477)
Huchen	MODERN SPECIES	241								PTPRS (ENSHHUG00000044036)	tbxa2r (ENSHHUG00000044021)	ENSHHUG00000043994	lim2.2 (ENSHHUG00000043985)	ENSHHUG00000043980	plaat1 (ENSHHUG00000043975)	mfn1b (ENSHHUG00000043872) #19	GNB4 (ENSHHUG00000043733) #20	actl6a (ENSHHUG00000043679) #22	mrpl47 (ENSHHUG00000043672) #23	ENSHHUG00000043669	ENSHHUG00000043663	usp13 (ENSHHUG00000043642) #25	PEX5L (ENSHHUG00000043638) #26
Salmoninae	ANCESTRAL SPECIES	133	ENSGT00940000159619.a.d	ENSGT00550000074851.f	ENSGT00390000008296.a.q	ENSGT00940000159248.b	ENSGT00940000153617.A.a.a.k.b	ENSGT00940000176289	ENSGT01030000234559.a.a.a.g	ENSGT00390000003420.b	ENSGT00940000165115.a.b	ENSGT01050000244814.a.a.b.b.b.a.b.d	ENSGT00940000159080	ENSGT00550000075004.e.a	ENSGT00940000156634.a.c	ENSGT00390000013727.d.a.c #19	ENSGT01000000214413.b.a.a.p #20	ENSGT00940000156305.o.b #22	ENSGT00390000002837.a #23	ENSGT00390000009980.a #24	ENSGT00940000157401.e #25	ENSGT00940000155931.a.c #26	ENSGT01050000244937.a.b.b.i	ENSGT00940000153386.A.m	ENSGT00940000156389.a.f	ENSGT00390000004757.c.a	ENSGT00390000007965	ENSGT00940000154942.e.b #30	ENSGT00940000153664.B.q.b.b.b.a.b	ENSGT00940000160465.k.a.b	ENSGT00940000165727.e.a	ENSGT00940000165727.f	ENSGT00940000164221.b
Huchen	MODERN SPECIES	699	ENSHHUG00000046858	ENSHHUG00000046849	ENSHHUG00000046831	BCL7A (ENSHHUG00000046816)	EIF2B1 (ENSHHUG00000046619)	ddx55 (ENSHHUG00000046445)	tmed2 (ENSHHUG00000046364)	ptpn11a (ENSHHUG00000046331)	ENSHHUG00000046324	ENSHHUG00000046318	ENSHHUG00000046314	pla2g3 (ENSHHUG00000046312)	ENSHHUG00000046309	ENSHHUG00000046306	ENSHHUG00000046271	actl6a (ENSHHUG00000046135) #22	mrpl47 (ENSHHUG00000046121) #23	ndufb5 (ENSHHUG00000046116) #24	usp13 (ENSHHUG00000046011) #25	PEX5L (ENSHHUG00000045987) #26
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00940000162953	ENSGT00940000159619.a.d	ENSGT00550000074851.f	ENSGT00390000008296.a.q	ENSGT00940000159248.b	ENSGT00940000153617.A.a.a.k.b	ENSGT01030000234559.a.a.a.g	ENSGT00390000003420.b	ENSGT00940000165115.a.b	ENSGT01050000244814.a.a.b.b.b.a.b.d	ENSGT00940000159080	ENSGT00550000075004.e.a	ENSGT00940000156634.a.c	ENSGT00390000013727.d.a.c #19	ENSGT01000000214413.b.a.a.p #20	ENSGT00940000156305.o.b #22	ENSGT00390000002837.a #23	ENSGT00390000009980.a #24	ENSGT00940000157401.e #25	ENSGT00940000155931.a.c #26	ENSGT01050000244937.a.b.b.i	ENSGT00940000153386.A.m	ENSGT00940000156389.a.f	ENSGT00390000004757.c.a	ENSGT00390000007965	ENSGT00940000154942.e.b #30	ENSGT00940000153664.B.q.b.b.b.a.b	ENSGT00940000160465.k.a.b	ENSGT00940000165727.e.a	ENSGT00940000164221.b	ENSGT00940000164924.b.h.b.a
Salmo	ANCESTRAL SPECIES	9	ENSGT00940000162953	ENSGT00940000159619.a.d	ENSGT00550000074851.f	ENSGT00390000008296.a.q	ENSGT00940000159248.b	ENSGT00940000153617.A.a.a.k.b	ENSGT01030000234559.a.a.a.g	ENSGT00390000003420.b	ENSGT00940000165115.a.b	ENSGT01050000244814.a.a.b.b.b.a.b.d	ENSGT00940000159080	ENSGT00550000075004.e.a	ENSGT00940000156634.a.c	ENSGT00390000013727.d.a.c #19	ENSGT01000000214413.b.a.a.p #20	ENSGT00940000156305.o.b #22	ENSGT00390000002837.a #23	ENSGT00390000009980.a #24	ENSGT00940000157401.e #25	ENSGT00940000155931.a.c #26	ENSGT01050000244937.a.b.b.i	ENSGT00940000153386.A.m	ENSGT00940000156389.a.f	ENSGT00390000004757.c.a	ENSGT00390000007965	ENSGT00940000154942.e.b #30	ENSGT00940000153664.B.q.b.b.b.a.b	ENSGT00940000160465.k.a.b	ENSGT00940000165727.e.a	ENSGT00940000165727.f	ENSGT00940000164221.b
River trout	MODERN SPECIES	8	GP5 (ENSSTUG00000036690)	her6 (ENSSTUG00000036677)	opa1 (ENSSTUG00000034959)	uhrf1 (ENSSTUG00000034392)	kdm4b (ENSSTUG00000034337)	PTPRS (ENSSTUG00000034178)	tbxa2r (ENSSTUG00000034158)	gipc3 (ENSSTUG00000034143)	ENSSTUG00000017820	lim2.2 (ENSSTUG00000017809)	asb3 (ENSSTUG00000017803)	ftsj3 (ENSSTUG00000017699)	plaat1 (ENSSTUG00000017689)	mfn1b (ENSSTUG00000017257) #19	GNB4 (ENSSTUG00000017167) #20	actl6a (ENSSTUG00000017078) #22	mrpl47 (ENSSTUG00000017042) #23	ndufb5 (ENSSTUG00000017025) #24	ENSSTUG00000017022	usp13 (ENSSTUG00000016777) #25	PEX5L (ENSSTUG00000016730) #26	htr2b (ENSSTUG00000016716)	psmd1 (ENSSTUG00000016610)	acap2b (ENSSTUG00000011984)	ANKUB1 (ENSSTUG00000011840)	rnf13 (ENSSTUG00000011813) #30	pfn2a (ENSSTUG00000011803)	TSC22D2 (ENSSTUG00000011792)	ENSSTUG00000011749	ENSSTUG00000011738	ENSSTUG00000011730
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00940000162953	ENSGT00940000159619.a.d	ENSGT00550000074851.f	ENSGT00390000008296.a.q	ENSGT00940000159248.b	ENSGT00990000209581	ENSGT00940000176289	ENSGT01030000234559.a.a.a.g	ENSGT00390000003420.b	ENSGT00940000165115.a.b	ENSGT01050000244814.a.a.b.b.b.a.b.d	ENSGT00940000159080	ENSGT00550000075004.e.a	ENSGT00390000013727.d.a.c #19	ENSGT01000000214413.b.a.a.p #20	ENSGT00940000156305.o.b #22	ENSGT00390000004757.d	ENSGT00940000156389.a.f	ENSGT00940000153386.A.m	ENSGT01050000244937.a.b.b.i	ENSGT00940000153386.A.n.a.a	ENSGT00940000155931.a.c #26	ENSGT00940000157401.e #25	ENSGT00390000009980.a #24	ENSGT00390000002837.a #23	ENSGT00390000007965.a	ENSGT00940000154942.e.b #30	ENSGT00940000153664.B.q.b.b.b.a.b	ENSGT00940000160465.k.a.b	ENSGT00940000165727.e.a	ENSGT00940000164221.b
Rainbow trout	MODERN SPECIES		kdm4b (ENSOMYG00000050202)	ENSOMYG00000066898	ENSOMYG00000004896	ENSOMYG00000070894	ENSOMYG00000064400	tbxa2r (ENSOMYG00000004818)	gipc3 (ENSOMYG00000004741)	ENSOMYG00000048963	ENSOMYG00000004707	lim2.2 (ENSOMYG00000004638)	ENSOMYG00000004596	ftsj3 (ENSOMYG00000004527)	MFN1 (ENSOMYG00000002960) #19	ENSOMYG00000001893 #20	ENSOMYG00000071191	ACTL6A (ENSOMYG00000001822) #22	ENSOMYG00000058510	ENSOMYG00000070385	ENSOMYG00000073319	ENSOMYG00000060865	ENSOMYG00000049899	ENSOMYG00000068117	ENSOMYG00000050970	ENSOMYG00000077256	ENSOMYG00000055391	ppp1r2 (ENSOMYG00000063298)	acap2b (ENSOMYG00000000800)	htr2b (ENSOMYG00000000960)	psmd1 (ENSOMYG00000000934)	ENSOMYG00000068924	PEX5L (ENSOMYG00000000982) #26
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00940000162953	ENSGT00940000159619.a.d	ENSGT00550000074851.f	ENSGT00390000008296.a.q	ENSGT00940000159248.b	ENSGT00990000209581	ENSGT00940000176289	ENSGT01030000234559.a.a.a.g	ENSGT00390000003420.b	ENSGT00940000165115.a.b	ENSGT01050000244814.a.a.b.b.b.a.b.d	ENSGT00940000159080	ENSGT00550000075004.e.a	ENSGT00390000013727.d.a.c #19	ENSGT01000000214413.b.a.a.p #20	ENSGT00940000156305.o.b #22	ENSGT00390000004757.d	ENSGT00940000156389.a.f	ENSGT00940000153386.A.m	ENSGT01050000244937.a.b.b.i	ENSGT00940000155931.a.c #26	ENSGT00940000157401.e #25	ENSGT00390000009980.a #24	ENSGT00390000002837.a #23	ENSGT00390000007965.a	ENSGT00940000154942.e.b #30	ENSGT00940000153664.B.q.b.b.b.a.b	ENSGT00940000160465.k.a.b	ENSGT00940000179142	ENSGT00940000164924.b.g	ENSGT00940000164175.a.k
Chinook salmon	MODERN SPECIES	30	NMUR1 (ENSOTSG00005002273)	dynlt2b (ENSOTSG00005002274)	ENSOTSG00005002277	ENSOTSG00005002282	ENSOTSG00005002285	ENSOTSG00005002290	TSC22D2 (ENSOTSG00005002298)	pfn2a (ENSOTSG00005002320)	rnf13 (ENSOTSG00005002474) #30	ENSOTSG00005002513	lim2.2 (ENSOTSG00005002514)	asb3 (ENSOTSG00005002522)	ftsj3 (ENSOTSG00005002551)	mfn1b (ENSOTSG00005002662) #19	ENSOTSG00005004855 #20	actl6a (ENSOTSG00005004894) #22	ENSOTSG00005004930	acap2b (ENSOTSG00005004943)	psmd1 (ENSOTSG00005006157)	htr2b (ENSOTSG00005006158)	usp13 (ENSOTSG00005006160) #25	ndufb5 (ENSOTSG00005006161) #24	mrpl47 (ENSOTSG00005006164) #23	ENSOTSG00005006166	ENSOTSG00005006168	ENSOTSG00005006169	tbc1d23 (ENSOTSG00005006171)	ENSOTSG00005006310	ENSOTSG00005006311	nit2 (ENSOTSG00005006312)	ENSOTSG00005006787
Coho salmon	MODERN SPECIES	24	kdm4b (ENSOKIG00005000723)	ENSOKIG00005000715	ENSOKIG00005000713	ENSOKIG00005000711	ENSOKIG00005000708	PTPRS (ENSOKIG00005000481)	tbxa2r (ENSOKIG00005000339)	gipc3 (ENSOKIG00005000324)	ENSOKIG00005000298	lim2.2 (ENSOKIG00005000277)	asb3 (ENSOKIG00005000234)	ftsj3 (ENSOKIG00005040358)	ENSOKIG00005040326	MFN1 (ENSOKIG00005039828) #19	ENSOKIG00005039629 #20	actl6a (ENSOKIG00005039461) #22	ENSOKIG00005039400	ENSOKIG00005039378	ENSOKIG00005039346	ENSOKIG00005039323	ANKUB1 (ENSOKIG00005039296)	ppp1r2 (ENSOKIG00005039266)	acap2b (ENSOKIG00005033483)	htr2b (ENSOKIG00005033181)	psmd1 (ENSOKIG00005033095)	PEX5L (ENSOKIG00005033058) #26	usp13 (ENSOKIG00005032921) #25	ndufb5 (ENSOKIG00005032894) #24	ENSOKIG00005032866	ENSOKIG00005032859	ANKUB1 (ENSOKIG00005032846)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000156305.p #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000156305.p #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000156305.p #22
Rainbow trout	MODERN SPECIES	26	uhrf1 (ENSOMYG00000009318)	ENSOMYG00000061386	kdm4b (ENSOMYG00000009012)	ENSOMYG00000008556	ENSOMYG00000061245	tbxa2r (ENSOMYG00000007570)	ENSOMYG00000053376	ENSOMYG00000007524	lim2.2 (ENSOMYG00000007419)	ENSOMYG00000075541	ENSOMYG00000007385	ENSOMYG00000007381	ENSOMYG00000056538	MFN1 (ENSOMYG00000005908) #19	GNB4 (ENSOMYG00000004367) #20	actl6a (ENSOMYG00000004281) #22	ENSOMYG00000066611	mrpl47 (ENSOMYG00000004174) #23	ndufb5 (ENSOMYG00000004154) #24	usp13 (ENSOMYG00000003971) #25	ENSOMYG00000060456	PEX5L (ENSOMYG00000003542) #26	ENSOMYG00000051084	ENSOMYG00000066435	htr2b (ENSOMYG00000003380)	psmd1 (ENSOMYG00000061520)	acap2b (ENSOMYG00000002841)	ppp1r2 (ENSOMYG00000002226)	ENSOMYG00000056775	RNF13 (ENSOMYG00000002161) #30	ENSOMYG00000002144
Salmo	ANCESTRAL SPECIES																	ENSGT00940000156305.p #22
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000044861	OPA1 (ENSSSAG00000044915)	ENSSSAG00000098184	uhrf1 (ENSSSAG00000046494)	kdm4b (ENSSSAG00000047041)	ENSSSAG00000106123	ENSSSAG00000051752	tbxa2r (ENSSSAG00000077292)	gipc3 (ENSSSAG00000077294)	ENSSSAG00000077298	lim2.2 (ENSSSAG00000111242)	ftsj3 (ENSSSAG00000077310)	ENSSSAG00000077453	MFN1 (ENSSSAG00000003124) #19	GNB4 (ENSSSAG00000108050) #20	actl6a (ENSSSAG00000077723) #22	mrpl47 (ENSSSAG00000077757) #23	ndufb5 (ENSSSAG00000077762) #24	usp13 (ENSSSAG00000077779) #25	PEX5L (ENSSSAG00000077851) #26	ENSSSAG00000119367	psmd1 (ENSSSAG00000096623)	htr2b (ENSSSAG00000077901)	acap2b (ENSSSAG00000077997)	ppp1r2 (ENSSSAG00000100272)	ANKUB1 (ENSSSAG00000006562)	rnf13 (ENSSSAG00000006565) #30	PFN2 (ENSSSAG00000006572)	tsc22d2 (ENSSSAG00000006594)	ENSSSAG00000006625	ENSSSAG00000007185
Acanthomorphata	ANCESTRAL SPECIES	54	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00940000175306	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000161826.A	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Cod	MODERN SPECIES	3	ENSGMOG00000033403	SPATA1 (ENSGMOG00000029567)	ctbs (ENSGMOG00000016331)	ENSGMOG00000016347	ENSGMOG00000016366	ENSGMOG00000016966	SSX2IP (ENSGMOG00000017036)	ENSGMOG00000017057	lpar3 (ENSGMOG00000017100)	mcoln2 (ENSGMOG00000017109)	ENSGMOG00000017137	ENSGMOG00000017184	ENSGMOG00000017216	MFN1 (ENSGMOG00000017233) #19	GNB4 (ENSGMOG00000017274) #20	actl6a (ENSGMOG00000017298) #22	mrpl47 (ENSGMOG00000017332) #23	ndufb5 (ENSGMOG00000017348) #24	usp13 (ENSGMOG00000017361) #25	PEX5L (ENSGMOG00000017400) #26	ENSGMOG00000034496	ENSGMOG00000024203	ENSGMOG00000024467	ENSGMOG00000032438	ENSGMOG00000023435	ENSGMOG00000026085	ENSGMOG00000017860	ENSGMOG00000029443	ENSGMOG00000030086	ENSGMOG00000032479	ENSGMOG00000032659
Euacanthomorphacea	ANCESTRAL SPECIES	9	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00940000175306	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161095	ENSGT00940000161826.A	ENSGT00940000164427.a.b	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311
Pinecone sodierfish	MODERN SPECIES	18	XXYLT1 (ENSMMDG00005022478)	fam43a (ENSMMDG00005022479)	lsg1 (ENSMMDG00005022481)	tmem44 (ENSMMDG00005022502)	ATP13A3 (ENSMMDG00005022514)	opa1 (ENSMMDG00005022547)	her6 (ENSMMDG00005023494)	ENSMMDG00005023496	psmd1 (ENSMMDG00005023525)	htr2b (ENSMMDG00005023905)	acap2b (ENSMMDG00005023983)	ppp1r2 (ENSMMDG00005024446)	plaat1 (ENSMMDG00005024448)	mfn1b (ENSMMDG00005024469) #19	gnb4b (ENSMMDG00005024642) #20	actl6a (ENSMMDG00005024643) #22	mrpl47 (ENSMMDG00005024644) #23	ndufb5 (ENSMMDG00005024645) #24	usp13 (ENSMMDG00005024646) #25	PEX5L (ENSMMDG00005024647) #26	ENSMMDG00005024688	ENSMMDG00005024689	ENSMMDG00005024690	ENSMMDG00005024691	ENSMMDG00005024692	P3H2 (ENSMMDG00005024693)	ENSMMDG00005024694	cpox (ENSMMDG00005024695)	prrg1 (ENSMMDG00005024696)	tmem47 (ENSMMDG00005024697)	tab3 (ENSMMDG00005024698)
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00940000175306	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000159678	ENSGT00940000161095	ENSGT00940000161826.A	ENSGT00940000164427.a.b	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244
Tiger tail seahorse	MODERN SPECIES	292	lpar3 (ENSHCOG00000017705)	ENSHCOG00000017798	SSX2IP (ENSHCOG00000017889)	SSX2IP (ENSHCOG00000017971)	ENSHCOG00000017986	SSX2IP (ENSHCOG00000018017)	ENSHCOG00000018035	ENSHCOG00000018104	ENSHCOG00000018714	ENSHCOG00000018760	ftsj3 (ENSHCOG00000018770)	plaat1 (ENSHCOG00000018808)	mfn1b (ENSHCOG00000018858) #19	gnb4b (ENSHCOG00000018897) #20	aldh7a1 (ENSHCOG00000000499)	actl6a (ENSHCOG00000018936) #22	mrpl47 (ENSHCOG00000018946) #23	ndufb5 (ENSHCOG00000018959) #24	usp13 (ENSHCOG00000019066) #25	PEX5L (ENSHCOG00000019113) #26	ENSHCOG00000019123	lrrc15 (ENSHCOG00000019128)	ENSHCOG00000019135	ENSHCOG00000019147	ENSHCOG00000019167	ENSHCOG00000019181	P3H2 (ENSHCOG00000019274)	ENSHCOG00000019303	cpox (ENSHCOG00000019320)	prrg1 (ENSHCOG00000019325)	tmem47 (ENSHCOG00000019337)
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00530000064273.a.b.q	ENSGT00940000175306	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00530000064273.a.b.q	ENSGT00940000175306	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00940000175306	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Pomacentridae	ANCESTRAL SPECIES	70	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT01100000263483.E.b.b.o	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499
Bicolor damselfish	MODERN SPECIES	1138	ctbs (ENSSPAG00000001949)	ENSSPAG00000001977	ENSSPAG00000002055	SSX2IP (ENSSPAG00000002119)	ENSSPAG00000002162	lpar3 (ENSSPAG00000002290)	mcoln2 (ENSSPAG00000002314)	ENSSPAG00000002364	ftsj3 (ENSSPAG00000002390)	ENSSPAG00000002408	ENSSPAG00000002455	plaat1 (ENSSPAG00000002459)	mfn1b (ENSSPAG00000002472) #19	gnb4b (ENSSPAG00000002538) #20	aldh7a1 (ENSSPAG00000002580)	actl6a (ENSSPAG00000002602) #22	mrpl47 (ENSSPAG00000002660) #23	ndufb5 (ENSSPAG00000002689) #24	usp13 (ENSSPAG00000002707) #25
Pomacentridae_A	ANCESTRAL SPECIES	176												ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.k	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593.c	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Amphiprion	ANCESTRAL SPECIES	190											ENSGT01100000263483.E.b.b.o.c.a	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.k	ENSGT00940000166731.a.e	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593.c	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00940000155265.b.b.a.a
Clown anemonefish	MODERN SPECIES	626							adgrl4 (ENSAOCG00000000500)	ENSAOCG00000008546	ENSAOCG00000008539	ENSAOCG00000008525	ENSAOCG00000008522	plaat1 (ENSAOCG00000008509)	mfn1b (ENSAOCG00000008499) #19	gnb4b (ENSAOCG00000008419) #20	aldh7a1 (ENSAOCG00000002448)	actl6a (ENSAOCG00000008382) #22	mrpl47 (ENSAOCG00000008347) #23	ndufb5 (ENSAOCG00000008340) #24	usp13 (ENSAOCG00000008319) #25	PEX5L (ENSAOCG00000008230) #26
Orange clownfish	MODERN SPECIES	11	SPATA1 (ENSAPEG00000004853)	ENSAPEG00000004890	rpf1 (ENSAPEG00000004908)	ENSAPEG00000004955	DNASE2B (ENSAPEG00000004998)	uox (ENSAPEG00000005071)	samd13 (ENSAPEG00000005092)	ENSAPEG00000005131	ttll7 (ENSAPEG00000005189)	ADGRL2 (ENSAPEG00000005297)	adgrl4 (ENSAPEG00000005492)	ENSAPEG00000005551	plaat1 (ENSAPEG00000005564)	mfn1b (ENSAPEG00000005600) #19	gnb4b (ENSAPEG00000005682) #20	actl6a (ENSAPEG00000005765) #22	mrpl47 (ENSAPEG00000005830) #23	ndufb5 (ENSAPEG00000005845) #24	usp13 (ENSAPEG00000005859) #25	PEX5L (ENSAPEG00000005937) #26	ENSAPEG00000006031	ENSAPEG00000006046	ENSAPEG00000006054	ENSAPEG00000006065	ENSAPEG00000006082	ENSAPEG00000006115	ENSAPEG00000006128	ENSAPEG00000006152	P3H2 (ENSAPEG00000006169)	ENSAPEG00000006225	cpox (ENSAPEG00000006233)
Spiny chromis	MODERN SPECIES	312																actl6a (ENSAPOG00000014111) #22	mrpl47 (ENSAPOG00000014123) #23	ndufb5 (ENSAPOG00000014133) #24	usp13 (ENSAPOG00000014235) #25	PEX5L (ENSAPOG00000014267) #26	ENSAPOG00000014288	ENSAPOG00000014295	ENSAPOG00000014300	TAAR1 (ENSAPOG00000014320)	ENSAPOG00000014340	ENSAPOG00000014380	ENSAPOG00000014476	ENSAPOG00000014489	ENSAPOG00000014521	ENSAPOG00000014544
Cichlidae	ANCESTRAL SPECIES	17	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00940000175306	ENSGT00390000007688.a.a	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672.j	ENSGT00940000165672.i	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161095	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Midas cichlid	MODERN SPECIES	46	rpf1 (ENSACIG00000014158)	ENSACIG00000014101	SPATA1 (ENSACIG00000014083)	ctbs (ENSACIG00000014059)	ENSACIG00000013962	ENSACIG00000013169	SSX2IP (ENSACIG00000013016)	lpar3 (ENSACIG00000013001)	mcoln2 (ENSACIG00000012976)	ENSACIG00000012953	ftsj3 (ENSACIG00000012880)	plaat1 (ENSACIG00000012853)	mfn1b (ENSACIG00000012823) #19	gnb4b (ENSACIG00000012802) #20	aldh7a1 (ENSACIG00000012753)	actl6a (ENSACIG00000012720) #22	mrpl47 (ENSACIG00000012703) #23	ndufb5 (ENSACIG00000012683) #24	usp13 (ENSACIG00000012624) #25	PEX5L (ENSACIG00000012595) #26	ENSACIG00000012573	ENSACIG00000012560	ENSACIG00000012535	P3H2 (ENSACIG00000012482)	ENSACIG00000012464	cpox (ENSACIG00000012440)	prrg1 (ENSACIG00000012435)	tmem47 (ENSACIG00000012423)	tab3 (ENSACIG00000012305)	nexn (ENSACIG00000012274)	ENSACIG00000012246
Pseudocrenilabrinae	ANCESTRAL SPECIES	10										ENSGT00940000165672.i	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161095	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Nile tilapia	MODERN SPECIES	14									ENSONIG00000028467	ENSONIG00000001653	ftsj3 (ENSONIG00000001654)	plaat1 (ENSONIG00000001658)	mfn1b (ENSONIG00000001659) #19	gnb4b (ENSONIG00000001671) #20	aldh7a1 (ENSONIG00000020814)	actl6a (ENSONIG00000001678) #22	mrpl47 (ENSONIG00000034761) #23	ndufb5 (ENSONIG00000001687) #24	usp13 (ENSONIG00000001692) #25	PEX5L (ENSONIG00000001700) #26	ENSONIG00000032131	ENSONIG00000042473	ENSONIG00000034797	ENSONIG00000020815	ENSONIG00000037373	ENSONIG00000031095	ENSONIG00000001708	p3h2 (ENSONIG00000001714)	ENSONIG00000001720	cpox (ENSONIG00000001721)	prrg1 (ENSONIG00000001724)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	26										ENSGT00940000165672.i	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161095	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	390										ENSNBRG00000017549	ftsj3 (ENSNBRG00000017453)	plaat1 (ENSNBRG00000017412)	mfn1b (ENSNBRG00000017365) #19	gnb4b (ENSNBRG00000017309) #20	aldh7a1 (ENSNBRG00000017289)	actl6a (ENSNBRG00000017268) #22	mrpl47 (ENSNBRG00000017251) #23	ndufb5 (ENSNBRG00000017234) #24	usp13 (ENSNBRG00000017198) #25	ENSNBRG00000017168	PEX5L (ENSNBRG00000017144) #26	ENSNBRG00000017126	ENSNBRG00000016885	ENSNBRG00000016864	ENSNBRG00000016839	ENSNBRG00000016826	P3H2 (ENSNBRG00000016641)	ENSNBRG00000016572	cpox (ENSNBRG00000016524)	prrg1 (ENSNBRG00000016495)	tab3 (ENSNBRG00000016399)
Lyretail cichlid	MODERN SPECIES	854																actl6a (ENSNBRG00000004140) #22	mrpl47 (ENSNBRG00000004178) #23	ndufb5 (ENSNBRG00000004186) #24
Haplochromini	ANCESTRAL SPECIES	16										ENSGT00940000165672.i	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d.c	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Burton s mouthbrooder	MODERN SPECIES	394										ENSHBUG00000022315	ftsj3 (ENSHBUG00000022331)	plaat1 (ENSHBUG00000022341)	mfn1b (ENSHBUG00000022434) #19	gnb4b (ENSHBUG00000022486) #20	aldh7a1 (ENSHBUG00000022503)	actl6a (ENSHBUG00000022531) #22	mrpl47 (ENSHBUG00000022567) #23	ndufb5 (ENSHBUG00000000826) #24	usp13 (ENSHBUG00000022763) #25	PEX5L (ENSHBUG00000022823) #26	ENSHBUG00000000702	ENSHBUG00000022843	ENSHBUG00000022887	ENSHBUG00000022901	ENSHBUG00000022925	ENSHBUG00000022934	P3H2 (ENSHBUG00000022967)	ENSHBUG00000023008	cpox (ENSHBUG00000023038)	prrg1 (ENSHBUG00000023050)	tmem47 (ENSHBUG00000023079)
Haplochromini_A	ANCESTRAL SPECIES	15										ENSGT00940000165672.i	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d.c	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
P. nyererei	MODERN SPECIES	478										ENSPNYG00000005064	ftsj3 (ENSPNYG00000005108)	plaat1 (ENSPNYG00000005241)	mfn1b (ENSPNYG00000005303) #19	gnb4b (ENSPNYG00000005369) #20	aldh7a1 (ENSPNYG00000005410)	actl6a (ENSPNYG00000005429) #22	mrpl47 (ENSPNYG00000005479) #23	ndufb5 (ENSPNYG00000005502) #24	usp13 (ENSPNYG00000005531) #25	PEX5L (ENSPNYG00000005645) #26	ENSPNYG00000005684	ENSPNYG00000005731	ENSPNYG00000005753	ENSPNYG00000005765	ENSPNYG00000005790	P3H2 (ENSPNYG00000005890)	ENSPNYG00000005921	cpox (ENSPNYG00000005988)	prrg1 (ENSPNYG00000006028)	tmem47 (ENSPNYG00000006038)	tab3 (ENSPNYG00000006059)
Haplochromini_B	ANCESTRAL SPECIES	10										ENSGT00940000165672.i	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d.c	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Zebra mbuna	MODERN SPECIES	1105									ENSMZEG00005001967	ENSMZEG00005001973	ftsj3 (ENSMZEG00005001992)	plaat1 (ENSMZEG00005002008)	mfn1b (ENSMZEG00005002022) #19	gnb4b (ENSMZEG00005002097) #20	aldh7a1 (ENSMZEG00005002131)	actl6a (ENSMZEG00005002142) #22	mrpl47 (ENSMZEG00005002155) #23	ndufb5 (ENSMZEG00005002181) #24	usp13 (ENSMZEG00005002200) #25	PEX5L (ENSMZEG00005002277) #26	ENSMZEG00005002297	ENSMZEG00005002306	ENSMZEG00005002322	fbn2b (ENSMZEG00005002351)	CTXN1 (ENSMZEG00005002447)	timm44 (ENSMZEG00005002469)	hnrnpm (ENSMZEG00005002512)	dmap1 (ENSMZEG00005002535)	RNF220 (ENSMZEG00005002575)	guk1b (ENSMZEG00005002586)	ENSMZEG00005002634
Eastern happy	MODERN SPECIES	14								ENSACLG00000019050	ENSACLG00000019058	ENSACLG00000019073	ftsj3 (ENSACLG00000019137)	plaat1 (ENSACLG00000019273)	mfn1b (ENSACLG00000019301) #19	gnb4b (ENSACLG00000019447) #20	aldh7a1 (ENSACLG00000019544)	actl6a (ENSACLG00000019562) #22	mrpl47 (ENSACLG00000019621) #23	ndufb5 (ENSACLG00000019645) #24	usp13 (ENSACLG00000019665) #25	PEX5L (ENSACLG00000019819) #26	ENSACLG00000019963	ENSACLG00000019969	ENSACLG00000019978	ENSACLG00000019985	ENSACLG00000020010	ENSACLG00000020069	P3H2 (ENSACLG00000020074)	ENSACLG00000020104	cpox (ENSACLG00000020122)	prrg1 (ENSACLG00000020140)	tmem47 (ENSACLG00000020181)
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00530000064273.a.b.q	ENSGT00940000175306	ENSGT00390000007688.a.a	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000164427.a.b	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
NAME_4	ANCESTRAL SPECIES	17										ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Mummichog	MODERN SPECIES	2394										ENSFHEG00000007654	ftsj3 (ENSFHEG00000007639)	plaat1 (ENSFHEG00000007626)	mfn1b (ENSFHEG00000007621) #19	gnb4b (ENSFHEG00000007552) #20	aldh7a1 (ENSFHEG00000007531)	actl6a (ENSFHEG00000007515) #22	mrpl47 (ENSFHEG00000007456) #23	ndufb5 (ENSFHEG00000007450) #24	usp13 (ENSFHEG00000007438) #25	PEX5L (ENSFHEG00000007321) #26	ENSFHEG00000007267	ENSFHEG00000007263	ENSFHEG00000007258	ENSFHEG00000007253	ENSFHEG00000007240	ENSFHEG00000007226	P3H2 (ENSFHEG00000007209)	ENSFHEG00000007198	cpox (ENSFHEG00000007185)	prrg1 (ENSFHEG00000007160)	tmem47 (ENSFHEG00000007129)
Sheepshead minnow	MODERN SPECIES	1480										ENSCVAG00000007468	ftsj3 (ENSCVAG00000007484)	plaat1 (ENSCVAG00000007492)	mfn1b (ENSCVAG00000007548) #19	gnb4b (ENSCVAG00000007589) #20	aldh7a1 (ENSCVAG00000007595)	actl6a (ENSCVAG00000007621) #22	mrpl47 (ENSCVAG00000007629) #23	ndufb5 (ENSCVAG00000007636) #24	usp13 (ENSCVAG00000007727) #25
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672.d	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311.g	ENSGT00390000017311.h	ENSGT00940000158538
Platyfish	MODERN SPECIES	23	ctbs (ENSXMAG00000026822)	ENSXMAG00000017992	ENSXMAG00000024532	ENSXMAG00000024162	SSX2IP (ENSXMAG00000018082)	lpar3 (ENSXMAG00000018102)	mcoln2 (ENSXMAG00000018106)	ENSXMAG00000018129	ENSXMAG00000018130	ENSXMAG00000018138	ftsj3 (ENSXMAG00000018139)	plaat1 (ENSXMAG00000018167)	mfn1b (ENSXMAG00000018170) #19	GNB4 (ENSXMAG00000018207) #20	aldh7a1 (ENSXMAG00000019958)	actl6a (ENSXMAG00000018223) #22	mrpl47 (ENSXMAG00000018249) #23	ndufb5 (ENSXMAG00000018257) #24	usp13 (ENSXMAG00000018261) #25	PEX5L (ENSXMAG00000018305) #26	ENSXMAG00000029171	lrrc15 (ENSXMAG00000019959)	ENSXMAG00000024558	ENSXMAG00000021823	ENSXMAG00000018340	ENSXMAG00000018355	P3H2 (ENSXMAG00000018362)	ENSXMAG00000018387	cpox (ENSXMAG00000018393)	cpox (ENSXMAG00000025349)	prrg1 (ENSXMAG00000018396)
Poecilia	ANCESTRAL SPECIES	1	ENSGT00940000153231.B	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672.d	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a.m #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311.g	ENSGT00390000017311.h	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Guppy	MODERN SPECIES	456	DNASE2B (ENSPREG00000014515)	ENSPREG00000014530	rpf1 (ENSPREG00000014542)	GNG5 (ENSPREG00000014568)	SPATA1 (ENSPREG00000014593)	ctbs (ENSPREG00000014613)	ENSPREG00000014647	ENSPREG00000014715	SSX2IP (ENSPREG00000014827)	lpar3 (ENSPREG00000014856)	ftsj3 (ENSPREG00000014874)	plaat1 (ENSPREG00000014900)	mfn1b (ENSPREG00000014938) #19	GNB4 (ENSPREG00000014995) #20	aldh7a1 (ENSPREG00000015029)	actl6a (ENSPREG00000015047) #22	mrpl47 (ENSPREG00000015080) #23	ndufb5 (ENSPREG00000015107) #24	usp13 (ENSPREG00000015230) #25	PEX5L (ENSPREG00000015301) #26	ENSPREG00000015324	ENSPREG00000015346	ENSPREG00000015358	ENSPREG00000015375	P3H2 (ENSPREG00000015431)	ENSPREG00000015534	cpox (ENSPREG00000015546)	cpox (ENSPREG00000015580)	cpox (ENSPREG00000015627)	prrg1 (ENSPREG00000015651)	tmem47 (ENSPREG00000015666)
NAME_6	ANCESTRAL SPECIES	19	ENSGT00940000153231.B	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672.d	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a.m #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311.g	ENSGT00390000017311.h	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Amazon molly	MODERN SPECIES	303														GNB4 (ENSPFOG00000015035) #20	aldh7a1 (ENSPFOG00000020003)	actl6a (ENSPFOG00000014996) #22	mrpl47 (ENSPFOG00000014965) #23	ndufb5 (ENSPFOG00000014924) #24	usp13 (ENSPFOG00000014734) #25	PEX5L (ENSPFOG00000014603) #26	ENSPFOG00000014588	ENSPFOG00000020002	ENSPFOG00000014585	ENSPFOG00000014559	ENSPFOG00000014547	P3H2 (ENSPFOG00000014376)	ENSPFOG00000014335	cpox (ENSPFOG00000014313)	prrg1 (ENSPFOG00000014309)	tmem47 (ENSPFOG00000014295)	tab3 (ENSPFOG00000014274)
Sailfin molly	MODERN SPECIES	1310													ENSPLAG00000000674	GNB4 (ENSPLAG00000011387) #20	aldh7a1 (ENSPLAG00000011401)	actl6a (ENSPLAG00000011475) #22	mrpl47 (ENSPLAG00000011483) #23	usp13 (ENSPLAG00000011532) #25	PEX5L (ENSPLAG00000011569) #26
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00940000153231.B	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000164427.a.b	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Mangrove rivulus	MODERN SPECIES	8	AVPR2 (ENSKMAG00000019356)	FAM120C (ENSKMAG00000019380)	hsd17b10 (ENSKMAG00000019418)	ENSKMAG00000019477	ENSKMAG00000019495	ENSKMAG00000020414	SSX2IP (ENSKMAG00000021973)	lpar3 (ENSKMAG00000021980)	mcoln2 (ENSKMAG00000021984)	ENSKMAG00000021988	ftsj3 (ENSKMAG00000021997)	plaat1 (ENSKMAG00000022002)	mfn1b (ENSKMAG00000022004) #19	gnb4b (ENSKMAG00000022018) #20	aldh7a1 (ENSKMAG00000022028)	actl6a (ENSKMAG00000022032) #22	mrpl47 (ENSKMAG00000022044) #23	ndufb5 (ENSKMAG00000022048) #24	usp13 (ENSKMAG00000022061) #25	PEX5L (ENSKMAG00000022080) #26	ENSKMAG00000022087	ENSKMAG00000022090	ENSKMAG00000022091	ENSKMAG00000022094	ENSKMAG00000022095	ENSKMAG00000022097	P3H2 (ENSKMAG00000022098)	ENSKMAG00000022101	cpox (ENSKMAG00000022103)	prrg1 (ENSKMAG00000022106)	tmem47 (ENSKMAG00000022108)
Turquoise killifish	MODERN SPECIES	1626	PTGER3 (ENSNFUG00015024017)	cthl (ENSNFUG00015024021)	ankrd13c (ENSNFUG00015024166)	SRSF11 (ENSNFUG00015024186)	ENSNFUG00015024297	ENSNFUG00015025346	SSX2IP (ENSNFUG00015025401)	lpar3 (ENSNFUG00015025402)	ENSNFUG00015025403	MCOLN2 (ENSNFUG00015025404)	CLCC1 (ENSNFUG00015025405)	FTSJ (ENSNFUG00015025406)	plaat1 (ENSNFUG00015025407)	mfn1b (ENSNFUG00015025408) #19	GNB4 (ENSNFUG00015025409) #20	ACTL6A (ENSNFUG00015025411) #22	mrpl47 (ENSNFUG00015025412) #23	NDUFB5 (ENSNFUG00015025413) #24	usp13 (ENSNFUG00015025414) #25	PEX5L (ENSNFUG00015025415) #26	ENSNFUG00015025416	ENSNFUG00015025417	ENSNFUG00015025418	ENSNFUG00015025419	ENSNFUG00015025420	ENSNFUG00015025421	LEPREL1 (ENSNFUG00015025422)	ENSNFUG00015025423	CPOX (ENSNFUG00015025424)	prrg1 (ENSNFUG00015025425)	TMEM47 (ENSNFUG00015025426)
Oryzias	ANCESTRAL SPECIES	5	ENSGT00530000064273.a.b.q.h.b	ENSGT00940000175306.c.a	ENSGT00530000064273.a.b.q.h.a	ENSGT00940000175306.d	ENSGT00530000064273.a.b.q.g	ENSGT00940000175306.c.b	ENSGT00390000007688.a.a	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672.a	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT00530000064273.a.b.q.h.b	ENSGT00940000175306.c.a	ENSGT00530000064273.a.b.q.h.a	ENSGT00530000064273.a.b.q.g	ENSGT00940000175306.c.b	ENSGT00390000007688.a.a	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672.a	ENSGT00940000165672.b	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499
Indian medaka	MODERN SPECIES	13	ENSOMEG00000015860	ENSOMEG00000014740	ENSOMEG00000014709	ENSOMEG00000014656	SSX2IP (ENSOMEG00000014636)	lpar3 (ENSOMEG00000014571)	mcoln2 (ENSOMEG00000014558)	ENSOMEG00000014512	ENSOMEG00000014495	ENSOMEG00000014472	ftsj3 (ENSOMEG00000014432)	plaat1 (ENSOMEG00000014340)	mfn1b (ENSOMEG00000014303) #19	gnb4b (ENSOMEG00000014230) #20	aldh7a1 (ENSOMEG00000014183)	actl6a (ENSOMEG00000014174) #22	mrpl47 (ENSOMEG00000014147) #23	ndufb5 (ENSOMEG00000014129) #24	usp13 (ENSOMEG00000014081) #25	PEX5L (ENSOMEG00000013992) #26	ENSOMEG00000013900	ENSOMEG00000013890	ENSOMEG00000013852	ENSOMEG00000013807	ENSOMEG00000013780	P3H2 (ENSOMEG00000013713)	ENSOMEG00000013650	cpox (ENSOMEG00000013631)	prrg1 (ENSOMEG00000013596)	tmem47 (ENSOMEG00000013577)	tab3 (ENSOMEG00000013555)
Javanese ricefish	MODERN SPECIES	18	ENSOJAG00000023249	ctbs (ENSOJAG00000023243)	ENSOJAG00000022594	ENSOJAG00000014012	ENSOJAG00000002435	SSX2IP (ENSOJAG00000001905)	lpar3 (ENSOJAG00000001892)	mcoln2 (ENSOJAG00000001865)	ENSOJAG00000001847	ENSOJAG00000001836	ftsj3 (ENSOJAG00000001483)	plaat1 (ENSOJAG00000001390)	mfn1b (ENSOJAG00000000778) #19	gnb4b (ENSOJAG00000000392) #20	aldh7a1 (ENSOJAG00000000362)	actl6a (ENSOJAG00000000347) #22	mrpl47 (ENSOJAG00000000329) #23	ndufb5 (ENSOJAG00000000321) #24	usp13 (ENSOJAG00000000259) #25	PEX5L (ENSOJAG00000000176) #26	ENSOJAG00000000163	ENSOJAG00000000158	ENSOJAG00000000149	ENSOJAG00000000107	ENSOJAG00000021413	P3H2 (ENSOJAG00000021397)	ENSOJAG00000021387	cpox (ENSOJAG00000021372)	prrg1 (ENSOJAG00000021368)	tmem47 (ENSOJAG00000021363)	tab3 (ENSOJAG00000021357)
Oryzias_a	ANCESTRAL SPECIES	14	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q.h.b	ENSGT00940000182110	ENSGT00530000064273.a.b.q.h.a	ENSGT00940000175306.d	ENSGT00530000064273.a.b.q.g	ENSGT00390000007688.a.a	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672.a	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176
Japanese Medaka HdrR	MODERN SPECIES	18	vit-6 (ENSORLG00000006187)	ENSORLG00000018696	ENSORLG00000024038	ENSORLG00000006099	ENSORLG00000024084	ol-vit1 (ENSORLG00000006084)	SSX2IP (ENSORLG00000006011)	lpar3 (ENSORLG00000005998)	mcoln2 (ENSORLG00000005977)	ENSORLG00000005928	ftsj3 (ENSORLG00000005910)	plaat1 (ENSORLG00000005879)	mfn1b (ENSORLG00000005858) #19	gnb4b (ENSORLG00000005797) #20	aldh7a1 (ENSORLG00000005764)	actl6a (ENSORLG00000005759) #22	mrpl47 (ENSORLG00000023413) #23	ndufb5 (ENSORLG00000005708) #24	usp13 (ENSORLG00000005687) #25	PEX5L (ENSORLG00000029400) #26	ENSORLG00000029312	ENSORLG00000005657	ENSORLG00000029456	ENSORLG00000022882	ENSORLG00000005651	P3H2 (ENSORLG00000005641)	ENSORLG00000005615	cpox (ENSORLG00000005599)	prrg1 (ENSORLG00000021814)	tmem47 (ENSORLG00000005588)	tab3 (ENSORLG00000005575)
Chinese medaka	MODERN SPECIES	1154				ENSOSIG00000008509	ENSOSIG00000008508	ENSOSIG00000008505	SSX2IP (ENSOSIG00000008503)	lpar3 (ENSOSIG00000008501)	mcoln2 (ENSOSIG00000008475)	ENSOSIG00000008470	ftsj3 (ENSOSIG00000008440)	plaat1 (ENSOSIG00000008436)	mfn1b (ENSOSIG00000007972) #19	gnb4b (ENSOSIG00000007968) #20	aldh7a1 (ENSOSIG00000007966)	actl6a (ENSOSIG00000007460) #22	mrpl47 (ENSOSIG00000007450) #23	ndufb5 (ENSOSIG00000007448) #24	usp13 (ENSOSIG00000007425) #25	PEX5L (ENSOSIG00000007419) #26	ENSOSIG00000007418	ENSOSIG00000007416	ENSOSIG00000007415	ENSOSIG00000007414	P3H2 (ENSOSIG00000007304)	ENSOSIG00000007299	cpox (ENSOSIG00000007298)	prrg1 (ENSOSIG00000007297)	tmem47 (ENSOSIG00000007296)	tab3 (ENSOSIG00000007295)	nexn (ENSOSIG00000007129)
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00940000172623	ENSGT00940000175306	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b.l	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Eupercaria	ANCESTRAL SPECIES	8	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b.l	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b.l	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Ballan wrasse	MODERN SPECIES	313	ENSLBEG00000026829	SPATA1 (ENSLBEG00000026842)	ctbs (ENSLBEG00000026854)	ENSLBEG00000026893	ENSLBEG00000026974	SSX2IP (ENSLBEG00000027006)	ENSLBEG00000027030	lpar3 (ENSLBEG00000027049)	mcoln2 (ENSLBEG00000027071)	ENSLBEG00000027107	ftsj3 (ENSLBEG00000027142)	plaat1 (ENSLBEG00000027163)	mfn1b (ENSLBEG00000027183) #19	gnb4b (ENSLBEG00000027228) #20	aldh7a1 (ENSLBEG00000027262)	actl6a (ENSLBEG00000027275) #22	mrpl47 (ENSLBEG00000027302) #23	ndufb5 (ENSLBEG00000027313) #24	usp13 (ENSLBEG00000027335) #25	PEX5L (ENSLBEG00000027373) #26	ENSLBEG00000027407
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b.l	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b.l	ENSGT00940000164427.a.b.k	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Gilthead seabream	MODERN SPECIES	2	ENSSAUG00010009522	ENSSAUG00010009255	ENSSAUG00010009252	ENSSAUG00010008609	SSX2IP (ENSSAUG00010008580)	ENSSAUG00010008574	lpar3 (ENSSAUG00010008567)	mcoln2 (ENSSAUG00010008496)	ENSSAUG00010008489	ENSSAUG00010008485	ftsj3 (ENSSAUG00010008484)	plaat1 (ENSSAUG00010008482)	mfn1b (ENSSAUG00010007884) #19	gnb4b (ENSSAUG00010007858) #20	aldh7a1 (ENSSAUG00010007853)	actl6a (ENSSAUG00010027138) #22	mrpl47 (ENSSAUG00010027133) #23	NDUFB5 (ENSSAUG00010027131) #24	usp13 (ENSSAUG00010027094) #25	PEX5L (ENSSAUG00010027044) #26	ENSSAUG00010027037	ENSSAUG00010027036	ENSSAUG00010027035	ENSSAUG00010027033	ENSSAUG00010027032	ENSSAUG00010027031	ENSSAUG00010027029	ENSSAUG00010027025	ENSSAUG00010027024	P3H2 (ENSSAUG00010027001)	ENSSAUG00010026992
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Large yellow croaker	MODERN SPECIES	489	ENSLCRG00005018257	rpf1 (ENSLCRG00005018248)	ENSLCRG00005018245	ctbs (ENSLCRG00005018244)	vtg5 (ENSLCRG00005002592)	SSX2IP (ENSLCRG00005002119)	ENSLCRG00005002116	lpar3 (ENSLCRG00005002114)	mcoln2 (ENSLCRG00005001967)	ENSLCRG00005001944	ftsj3 (ENSLCRG00005001879)	plaat1 (ENSLCRG00005001849)	mfn1b (ENSLCRG00005001258) #19	gnb4b (ENSLCRG00005001142) #20	aldh7a1 (ENSLCRG00005001138)	actl6a (ENSLCRG00005001121) #22	mrpl47 (ENSLCRG00005001117) #23	ndufb5 (ENSLCRG00005001114) #24	usp13 (ENSLCRG00005001059) #25	PEX5L (ENSLCRG00005000900) #26	ENSLCRG00005000867	ENSLCRG00005000864	ENSLCRG00005000860	ENSLCRG00005000858	P3H2 (ENSLCRG00005000816)	ENSLCRG00005000802	cpox (ENSLCRG00005021455)	prrg1 (ENSLCRG00005021454)	tmem47 (ENSLCRG00005021453)	tab3 (ENSLCRG00005021452)	nexn (ENSLCRG00005021448)
European seabass	MODERN SPECIES	17	GNG5 (ENSDLAG00005023105)	SPATA1 (ENSDLAG00005023108)	ctbs (ENSDLAG00005023117)	ENSDLAG00005023145	ENSDLAG00005023651	SSX2IP (ENSDLAG00005026007)	ENSDLAG00005026012	lpar3 (ENSDLAG00005032639)	mcoln2 (ENSDLAG00005026024)	ENSDLAG00005026036	ENSDLAG00005026040	ENSDLAG00005026042	MFN1 (ENSDLAG00005026049) #19	GNB4 (ENSDLAG00005026071) #20	ENSDLAG00005034805	actl6a (ENSDLAG00005026080) #22	mrpl47 (ENSDLAG00005026094) #23	usp13 (ENSDLAG00005026106) #25	PEX5L (ENSDLAG00005026129) #26	ENSDLAG00005012641	ENSDLAG00005026130	ENSDLAG00005006720	ENSDLAG00005006725	ENSDLAG00005006731	ENSDLAG00005006756	ENSDLAG00005006760	ENSDLAG00005006857	cpox (ENSDLAG00005034795)	prrg1 (ENSDLAG00005027771)	tmem47 (ENSDLAG00005006885)	tab3 (ENSDLAG00005006896)
Perciformes	ANCESTRAL SPECIES	8	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000153231.B	ENSGT01100000263525.a.b.b.j	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176
Pike perch	MODERN SPECIES	21	ctbs (ENSSLUG00000025206)	ENSSLUG00000025116	ENSSLUG00000023237	ENSSLUG00000021839	ENSSLUG00000002230	SSX2IP (ENSSLUG00000001036)	ENSSLUG00000001018	lpar3 (ENSSLUG00000001005)	mcoln2 (ENSSLUG00000000987)	ENSSLUG00000000975	ftsj3 (ENSSLUG00000000954)	plaat1 (ENSSLUG00000000941)	mfn1b (ENSSLUG00000000732) #19	gnb4b (ENSSLUG00000000612) #20	aldh7a1 (ENSSLUG00000000605)	actl6a (ENSSLUG00000000576) #22	mrpl47 (ENSSLUG00000000560) #23	ndufb5 (ENSSLUG00000000556) #24	usp13 (ENSSLUG00000000522) #25	PEX5L (ENSSLUG00000000500) #26	ENSSLUG00000000492	ENSSLUG00000000484	ENSSLUG00000000473	ENSSLUG00000000468	P3H2 (ENSSLUG00000000435)	CCDC181 (ENSSLUG00000000418)	cpox (ENSSLUG00000000412)	prrg1 (ENSSLUG00000000408)	tmem47 (ENSSLUG00000000405)	tab3 (ENSSLUG00000000403)	nexn (ENSSLUG00000000378)
Channel bull blenny	MODERN SPECIES	18	DNASE2B (ENSCGOG00000015002)	ENSCGOG00000015007	rpf1 (ENSCGOG00000015015)	GNG5 (ENSCGOG00000015045)	ctbs (ENSCGOG00000015047)	vtg5 (ENSCGOG00000015326)	SSX2IP (ENSCGOG00000021754)	ENSCGOG00000021761	lpar3 (ENSCGOG00000021762)	mcoln2 (ENSCGOG00000021766)	ENSCGOG00000021816	ftsj3 (ENSCGOG00000021823)	plaat1 (ENSCGOG00000022068)	ENSCGOG00000022069 #19	aldh7a1 (ENSCGOG00000022072)	actl6a (ENSCGOG00000022076) #22	mrpl47 (ENSCGOG00000022331) #23	ndufb5 (ENSCGOG00000022356) #24	usp13 (ENSCGOG00000022371) #25	PEX5L (ENSCGOG00000022592) #26	ENSCGOG00000022610	ENSCGOG00000022620	ENSCGOG00000022623	ENSCGOG00000022625	P3H2 (ENSCGOG00000022639)	ENSCGOG00000022834	cpox (ENSCGOG00000022837)	prrg1 (ENSCGOG00000022851)	tmem47 (ENSCGOG00000022852)	tab3 (ENSCGOG00000022855)	nexn (ENSCGOG00000022862)
Cottioidei	ANCESTRAL SPECIES	5	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176
Stickleback	MODERN SPECIES	8	ctbs (ENSGACG00000009697)	ENSGACG00000009711	ENSGACG00000009769	SSX2IP (ENSGACG00000009802)	ENSGACG00000009808	lpar3 (ENSGACG00000009820)	mcoln2 (ENSGACG00000009823)	ENSGACG00000009829	ftsj3 (ENSGACG00000009841)	plaat1 (ENSGACG00000009850)	mfn1b (ENSGACG00000009857) #19	GNB4 (ENSGACG00000009890) #20	ENSGACG00000009928	aldh7a1 (ENSGACG00000009931)	ENSGACG00000009939	actl6a (ENSGACG00000009940) #22	mrpl47 (ENSGACG00000009992) #23	ndufb5 (ENSGACG00000009997) #24	usp13 (ENSGACG00000010015) #25	PEX5L (ENSGACG00000010027) #26	ENSGACG00000010035	ENSGACG00000010040	ENSGACG00000010050	P3H2 (ENSGACG00000010066)	ENSGACG00000010075	cpox (ENSGACG00000010082)	ENSGACG00000010093	prrg1 (ENSGACG00000010095)	tmem47 (ENSGACG00000010104)	tab3 (ENSGACG00000010107)	nexn (ENSGACG00000010119)
Lumpfish	MODERN SPECIES	19	ENSCLMG00005019923	rpf1 (ENSCLMG00005019927)	ENSCLMG00005020133	ctbs (ENSCLMG00005020134)	ENSCLMG00005020145	ENSCLMG00005020515	SSX2IP (ENSCLMG00005022297)	ENSCLMG00005022300	lpar3 (ENSCLMG00005022303)	mcoln2 (ENSCLMG00005022308)	ENSCLMG00005022343	ftsj3 (ENSCLMG00005022345)	plaat1 (ENSCLMG00005022349)	mfn1b (ENSCLMG00005022361) #19	gnb4b (ENSCLMG00005022390) #20	actl6a (ENSCLMG00005022397) #22	mrpl47 (ENSCLMG00005022398) #23	ndufb5 (ENSCLMG00005022399) #24	usp13 (ENSCLMG00005022400) #25	PEX5L (ENSCLMG00005022403) #26	ENSCLMG00005022406	ENSCLMG00005022407	ENSCLMG00005022409	ENSCLMG00005022410	ENSCLMG00005022411	ENSCLMG00005022412	ENSCLMG00005022413	P3H2 (ENSCLMG00005022415)	ENSCLMG00005022424	cpox (ENSCLMG00005022425)	prrg1 (ENSCLMG00005022427)
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00940000153231.B	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000159678	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499
Tetraodon	MODERN SPECIES		ENSTNIG00000001300	rpf1 (ENSTNIG00000015558)	GNG5 (ENSTNIG00000015557)	SPATA1 (ENSTNIG00000015556)	ctbs (ENSTNIG00000015555)	vtg5 (ENSTNIG00000000613)	SSX2IP (ENSTNIG00000015554)	ENSTNIG00000015553	lpar3 (ENSTNIG00000015552)	mcoln2 (ENSTNIG00000015551)	ENSTNIG00000015550	ftsj3 (ENSTNIG00000015549)	mfn1b (ENSTNIG00000015548) #19	gnb4b (ENSTNIG00000015547) #20	aldh7a1 (ENSTNIG00000000110)	actl6a (ENSTNIG00000015546) #22	mrpl47 (ENSTNIG00000015545) #23	ndufb5 (ENSTNIG00000015544) #24	usp13 (ENSTNIG00000015543) #25	PEX5L (ENSTNIG00000015542) #26	ENSTNIG00000015541	ENSTNIG00000015540	cpox (ENSTNIG00000015539)	prrg1 (ENSTNIG00000019762)	tmem47 (ENSTNIG00000015538)	tab3 (ENSTNIG00000015537)	nexn (ENSTNIG00000015536)	ENSTNIG00000015535	zgc:153738 (ENSTNIG00000015534)	ENSTNIG00000015533	guk1b (ENSTNIG00000015532)
Fugu	MODERN SPECIES	12	ENSTRUG00000017463	rpf1 (ENSTRUG00000023749)	ENSTRUG00000020907	SPATA1 (ENSTRUG00000017464)	ctbs (ENSTRUG00000017471)	vtg5 (ENSTRUG00000017475)	SSX2IP (ENSTRUG00000017514)	lpar3 (ENSTRUG00000017535)	mcoln2 (ENSTRUG00000017541)	ENSTRUG00000017546	ftsj3 (ENSTRUG00000017550)	plaat1 (ENSTRUG00000017562)	mfn1b (ENSTRUG00000017563) #19	gnb4b (ENSTRUG00000017578) #20	aldh7a1 (ENSTRUG00000017585)	actl6a (ENSTRUG00000017587) #22	mrpl47 (ENSTRUG00000017597) #23	ndufb5 (ENSTRUG00000017599) #24	usp13 (ENSTRUG00000017606) #25	PEX5L (ENSTRUG00000017628) #26	ENSTRUG00000026815	ENSTRUG00000023667	ENSTRUG00000027730	lrrc15 (ENSTRUG00000017636)	ENSTRUG00000023694	ENSTRUG00000020761	ENSTRUG00000020652	P3H2 (ENSTRUG00000017655)	ENSTRUG00000017666	cpox (ENSTRUG00000021257)	prrg1 (ENSTRUG00000028395)
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b.l	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Carangaria	ANCESTRAL SPECIES	7	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b.l	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000161095	ENSGT00940000164427.b	ENSGT00940000159295	ENSGT01100000263536.B.d	ENSGT00390000017614.e.b	ENSGT00950000182810.B.b.a.b	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244
Seriola	ANCESTRAL SPECIES		ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00940000182110	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000159678	ENSGT01030000234774	ENSGT00940000161826.A	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a
Greater amberjack	MODERN SPECIES		ctbs (ENSSDUG00000003817)	ENSSDUG00000003732	ENSSDUG00000003716	ENSSDUG00000003646	SSX2IP (ENSSDUG00000003612)	ENSSDUG00000003528	lpar3 (ENSSDUG00000003505)	mcoln2 (ENSSDUG00000003489)	ENSSDUG00000003422	ftsj3 (ENSSDUG00000003385)	plaat1 (ENSSDUG00000003364)	ENSSDUG00000003347	mfn1b (ENSSDUG00000003272) #19	gnb4b (ENSSDUG00000003234) #20	aldh7a1 (ENSSDUG00000003223)	actl6a (ENSSDUG00000003168) #22	mrpl47 (ENSSDUG00000003140) #23	ndufb5 (ENSSDUG00000003122) #24	usp13 (ENSSDUG00000002944) #25	PEX5L (ENSSDUG00000002885) #26	ENSSDUG00000002880	lrrc15 (ENSSDUG00000002874)	ENSSDUG00000002863	ENSSDUG00000002842	ENSSDUG00000002825	ENSSDUG00000002810	P3H2 (ENSSDUG00000002767)	ENSSDUG00000002756	cpox (ENSSDUG00000002735)	prrg1 (ENSSDUG00000002729)	tmem47 (ENSSDUG00000002717)
Yellowtail amberjack	MODERN SPECIES	2246	SPATA1 (ENSSLDG00000018380)	ctbs (ENSSLDG00000018348)	ENSSLDG00000018291	ENSSLDG00000018264	ENSSLDG00000018203	SSX2IP (ENSSLDG00000018175)	ENSSLDG00000018069	lpar3 (ENSSLDG00000018044)	mcoln2 (ENSSLDG00000018022)	ENSSLDG00000018005	ftsj3 (ENSSLDG00000017970)	plaat1 (ENSSLDG00000017956)	mfn1b (ENSSLDG00000017886) #19	gnb4b (ENSSLDG00000017829) #20	aldh7a1 (ENSSLDG00000017810)	actl6a (ENSSLDG00000017725) #22	mrpl47 (ENSSLDG00000017795) #23	ndufb5 (ENSSLDG00000017689) #24	usp13 (ENSSLDG00000017529) #25	PEX5L (ENSSLDG00000017472) #26	ENSSLDG00000017465	lrrc15 (ENSSLDG00000017461)	ENSSLDG00000017450	ENSSLDG00000017433	ENSSLDG00000017416	ENSSLDG00000017408	P3H2 (ENSSLDG00000017365)	ENSSLDG00000017341	cpox (ENSSLDG00000017311)	prrg1 (ENSSLDG00000017297)	tmem47 (ENSSLDG00000017281)
Barramundi perch	MODERN SPECIES	43	rpf1 (ENSLCAG00010015306)	ENSLCAG00010015335	ENSLCAG00010015341	ctbs (ENSLCAG00010015347)	ENSLCAG00010015942	ENSLCAG00010019900	SSX2IP (ENSLCAG00010022080)	ENSLCAG00010022095	lpar3 (ENSLCAG00010022128)	mcoln2 (ENSLCAG00010022143)	ENSLCAG00010022203	ftsj3 (ENSLCAG00010022212)	plaat1 (ENSLCAG00010022229)	mfn1b (ENSLCAG00010022363) #19	gnb4b (ENSLCAG00010022759) #20	actl6a (ENSLCAG00010022856) #22	mrpl47 (ENSLCAG00010023043) #23	ndufb5 (ENSLCAG00010023048) #24	usp13 (ENSLCAG00010023080) #25	PEX5L (ENSLCAG00010023136) #26	ENSLCAG00010023149	ENSLCAG00010023161	ENSLCAG00010023163	ENSLCAG00010023165	ENSLCAG00010023167	P3H2 (ENSLCAG00010023185)	ENSLCAG00010023209	cpox (ENSLCAG00010023213)	prrg1 (ENSLCAG00010023218)	tmem47 (ENSLCAG00010023221)	tab3 (ENSLCAG00010023225)
Pleuronectoidei	ANCESTRAL SPECIES	30	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b.l	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Tongue sole	MODERN SPECIES	11	CACNA1E (ENSCSEG00000013120)	soat1 (ENSCSEG00000013159)	abl2 (ENSCSEG00000013183)	osbpl9 (ENSCSEG00000013213)	tor3a (ENSCSEG00000013288)	calr (ENSCSEG00000013308)	ENSCSEG00000013323	lpar3 (ENSCSEG00000013420)	mcoln2 (ENSCSEG00000013435)	ENSCSEG00000013456	ftsj3 (ENSCSEG00000013468)	plaat1 (ENSCSEG00000013487)	mfn1b (ENSCSEG00000013502) #19	gnb4b (ENSCSEG00000013543) #20	aldh7a1 (ENSCSEG00000013548)	actl6a (ENSCSEG00000013552) #22	mrpl47 (ENSCSEG00000013581) #23	ndufb5 (ENSCSEG00000013585) #24	usp13 (ENSCSEG00000013594) #25	PEX5L (ENSCSEG00000013625) #26	ENSCSEG00000013679	ENSCSEG00000013684	ENSCSEG00000013690	ENSCSEG00000013693	ENSCSEG00000013701	ENSCSEG00000013731	P3H2 (ENSCSEG00000013736)	ENSCSEG00000013751	cpox (ENSCSEG00000013774)	prrg1 (ENSCSEG00000013785)	tmem47 (ENSCSEG00000013799)
Turbot	MODERN SPECIES	3	rpf1 (ENSSMAG00000035103)	ENSSMAG00000024008	SPATA1 (ENSSMAG00000031286)	ctbs (ENSSMAG00000022367)	ENSSMAG00000026394	SSX2IP (ENSSMAG00000030548)	ENSSMAG00000032270	ENSSMAG00000033559	mcoln2 (ENSSMAG00000002779)	ENSSMAG00000002817	ENSSMAG00000002863	ENSSMAG00000002891	MFN1 (ENSSMAG00000002898) #19	GNB4 (ENSSMAG00000002943) #20	ENSSMAG00000002982	actl6a (ENSSMAG00000002988) #22	mrpl47 (ENSSMAG00000003013) #23	ndufb5 (ENSSMAG00000003024) #24	usp13 (ENSSMAG00000003050) #25	PEX5L (ENSSMAG00000003159) #26	ENSSMAG00000003214	ENSSMAG00000003220	ENSSMAG00000037623	ENSSMAG00000035618	ENSSMAG00000003249	ENSSMAG00000029901	ENSSMAG00000003284	ENSSMAG00000003318	cpox (ENSSMAG00000003331)	prrg1 (ENSSMAG00000003351)	tmem47 (ENSSMAG00000003365)
Anabantaria	ANCESTRAL SPECIES	7	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b.l	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Zig-zag eel	MODERN SPECIES	18	ENSMAMG00000005640	guk1b (ENSMAMG00000005650)	ENSMAMG00000024567	ENSMAMG00000005737	ENSMAMG00000024461	zgc:153738 (ENSMAMG00000005761)	ENSMAMG00000005774	ENSMAMG00000005779	nexn (ENSMAMG00000005794)	tab3 (ENSMAMG00000005849)	cpox (ENSMAMG00000005925)	prrg1 (ENSMAMG00000026361)	ENSMAMG00000005944	MFN1 (ENSMAMG00000005965) #19	GNB4 (ENSMAMG00000006039) #20	actl6a (ENSMAMG00000006081) #22	ENSMAMG00000028082	mrpl47 (ENSMAMG00000028175) #23	ndufb5 (ENSMAMG00000028081) #24	usp13 (ENSMAMG00000006144) #25	PEX5L (ENSMAMG00000006230) #26	ENSMAMG00000006262	ENSMAMG00000006275	ENSMAMG00000006276	ENSMAMG00000026020	ENSMAMG00000006317	ENSMAMG00000006370	ENSMAMG00000006396	ENSMAMG00000006408	ENSMAMG00000006479	mcoln2 (ENSMAMG00000006495)
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT01100000263525.a.b.b.j	ENSGT00390000003298	ENSGT00390000012891	ENSGT00530000064273.a.b.r	ENSGT00530000064273.a.b.q	ENSGT00390000007688.a.a	ENSGT00940000163785.b	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00940000165672	ENSGT00550000075004	ENSGT00940000156634.a	ENSGT00390000013727.d.a #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154938	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.a #26	ENSGT00940000162953	ENSGT00940000164427.a.b.l	ENSGT00940000161826.A	ENSGT00940000166731.a	ENSGT01030000234774	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538
Climbing perch	MODERN SPECIES	17	CTBS (ENSATEG00000010737)	ENSATEG00000010641	ENSATEG00000010547	ENSATEG00000026893	ENSATEG00000005731	SSX2IP (ENSATEG00000010459)	ENSATEG00000010269	lpar3 (ENSATEG00000026676)	mcoln2 (ENSATEG00000010205)	ENSATEG00000010110	ENSATEG00000010187	ENSATEG00000010069	ENSATEG00000010040	MFN1 (ENSATEG00000009967) #19	GNB4 (ENSATEG00000009926) #20	actl6a (ENSATEG00000009849) #22	mrpl47 (ENSATEG00000009838) #23	ndufb5 (ENSATEG00000009830) #24	usp13 (ENSATEG00000009714) #25	PEX5L (ENSATEG00000009680) #26	ENSATEG00000028497	ENSATEG00000009663	ENSATEG00000009630	ENSATEG00000009612	ENSATEG00000009566	ENSATEG00000009556	ENSATEG00000009514	ENSATEG00000009456	cpox (ENSATEG00000009421)	prrg1 (ENSATEG00000009411)	tmem47 (ENSATEG00000009400)
Siamese fighting fish	MODERN SPECIES	15	uox (ENSBSLG00000022712)	DNASE2B (ENSBSLG00000022690)	rpf1 (ENSBSLG00000022640)	ENSBSLG00000022632	ENSBSLG00000022621	ctbs (ENSBSLG00000022611)	vtg5 (ENSBSLG00000020125)	SSX2IP (ENSBSLG00000020018)	lpar3 (ENSBSLG00000020010)	mcoln2 (ENSBSLG00000019907)	ENSBSLG00000019875	ftsj3 (ENSBSLG00000019721)	mfn1b (ENSBSLG00000018717) #19	gnb4b (ENSBSLG00000018674) #20	aldh7a1 (ENSBSLG00000018660)	actl6a (ENSBSLG00000018405) #22	mrpl47 (ENSBSLG00000018368) #23	ndufb5 (ENSBSLG00000018346) #24	usp13 (ENSBSLG00000016493) #25	PEX5L (ENSBSLG00000016473) #26	ENSBSLG00000016471	ENSBSLG00000016469	ENSBSLG00000016465	ENSBSLG00000016464	ENSBSLG00000016461	ENSBSLG00000016458	P3H2 (ENSBSLG00000016454)	ENSBSLG00000016453	cpox (ENSBSLG00000016444)	prrg1 (ENSBSLG00000016440)	tmem47 (ENSBSLG00000016436)
Spotted gar	MODERN SPECIES	652	eif4a2 (ENSLOCG00000000847)	rfc4 (ENSLOCG00000000876)	ENSLOCG00000000896	b3gnt5a (ENSLOCG00000017371)	ect2 (ENSLOCG00000000941)	SPATA16 (ENSLOCG00000000975)	nlgn1 (ENSLOCG00000000991) #7	NAALADL2 (ENSLOCG00000001022) #9	ENSLOCG00000001063 ##11	kcnmb2 (ENSLOCG00000001089) #13	ZMAT3 (ENSLOCG00000001108) #14	PIK3CA (ENSLOCG00000001119) #15	KCNMB3 (ENSLOCG00000001177) #16	mfn1b (ENSLOCG00000001195) #19	gnb4b (ENSLOCG00000001216) #20	actl6a (ENSLOCG00000001256) #22	mrpl47 (ENSLOCG00000001289) #23	ndufb5 (ENSLOCG00000001304) #24	usp13 (ENSLOCG00000001321) #25	PEX5L (ENSLOCG00000001351) #26	pde6d (ENSLOCG00000001371)	PHB2 (ENSLOCG00000001389)	ptmaa (ENSLOCG00000001413)	ENSLOCG00000001427	MELTF (ENSLOCG00000001493)	NCBP2AS2 (ENSLOCG00000017372)	ncbp2 (ENSLOCG00000001518)	SENP5 (ENSLOCG00000001529)	anos1b (ENSLOCG00000001554)	si:ch211-262h13.5 (ENSLOCG00000001586)	AHSG (ENSLOCG00000001600)
Reedfish	MODERN SPECIES	10	b3gnt5a (ENSECRG00000011979)	MCF2L2 (ENSECRG00000011952)	ect2 (ENSECRG00000011854)	SPATA16 (ENSECRG00000011817)	ENSECRG00000011785 #7	NLGN1 (ENSECRG00000011771) #7	NAALADL2 (ENSECRG00000011757) #9	ENSECRG00000011747	tbl1xr1a (ENSECRG00000011681) ##11	kcnmb2 (ENSECRG00000011622) #13	ZMAT3 (ENSECRG00000011580) #14	PIK3CA (ENSECRG00000011540) #15	KCNMB3 (ENSECRG00000011514) #16	MFN1 (ENSECRG00000011447) #19	GNB4 (ENSECRG00000011379) #20	actl6a (ENSECRG00000011329) #22	mrpl47 (ENSECRG00000011293) #23	ndufb5 (ENSECRG00000011270) #24	ENSECRG00000011258 #25	PEX5L (ENSECRG00000008160) #26	ENSECRG00000008135	ENSECRG00000008130	pde6d (ENSECRG00000008114)	phb2b (ENSECRG00000008081)	ENSECRG00000008064	dlg1a (ENSECRG00000007979)	MELTF (ENSECRG00000007942)	NCBP2AS2 (ENSECRG00000007926)	ncbp2 (ENSECRG00000007919)	ENSECRG00000007909	ENSECRG00000007897
Elephant shark	MODERN SPECIES	1486	ENSCMIG00000001004	ENSCMIG00000001178	ENSCMIG00000001393	CCDC150 (ENSCMIG00000001447)	nceh1b.1 (ENSCMIG00000001486)	ect2 (ENSCMIG00000001575)	SPATA16 (ENSCMIG00000001766)	nlgn1 (ENSCMIG00000001796) #7	NAALADL2 (ENSCMIG00000001850) #9	TBL1XR1 (ENSCMIG00000002022) #11	kcnmb2 (ENSCMIG00000002407) #13	ZMAT3 (ENSCMIG00000002413) #14	PIK3CA (ENSCMIG00000002435) #15	MFN1 (ENSCMIG00000002484) #19	gnb4b (ENSCMIG00000002549) #20	actl6a (ENSCMIG00000002701) #22	mrpl47 (ENSCMIG00000003057) #23	ndufb5 (ENSCMIG00000003066) #24	usp13 (ENSCMIG00000003077) #25	PEX5L (ENSCMIG00000003135) #26	ENSCMIG00000003168	pde6d (ENSCMIG00000003180)	phb2 (ENSCMIG00000003203)