Haplochromini	ANCESTRAL SPECIES	4	ENSGT01000000214675.a #8	ENSGT00940000156811.a #9	ENSGT00940000157207.a.b #10	ENSGT00940000156902.a #11	ENSGT00940000164790.b #12	ENSGT00940000153877.a.b #13	ENSGT00530000065225 #14	ENSGT00530000063497.a.b	ENSGT00390000012903 #15	ENSGT00390000000224 #16	ENSGT00940000177481 #18	ENSGT00940000153181 #17	ENSGT00440000038585.d #19	ENSGT00530000063156.a.a.b #20	ENSGT00940000156340.a.c #21	ENSGT00940000163205.c.h #22	ENSGT00940000163205.c.g #23	ENSGT01020000230351.D.a.a.b #24	ENSGT00940000163543.a #25	ENSGT00940000154687.B.q.b #26	ENSGT00940000165787.a.b.g.a #29	ENSGT00940000165787.a.b.g.b #28	ENSGT00940000154130.a.b.f #27	ENSGT00950000182888.a.b #30	ENSGT00390000004247 #31	ENSGT00400000024875.c.b #32	ENSGT00400000024875.c.a.a.a #33	ENSGT00400000024875.c.a.a.b.a.a.a.a ##35	ENSGT00400000024875.c.a.a.b.a.b.p.a #34	ENSGT00400000024875.c.a.a.b.a.b.o #35	ENSGT00940000159387.e #36
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT01000000214675.a #8	ENSGT00940000156811.a #9	ENSGT00940000157207.a.b #10	ENSGT00940000156902.a #11	ENSGT00940000164790.b #12	ENSGT00940000153877.a.b #13	ENSGT00530000065225 #14	ENSGT00530000063497.a.b	ENSGT00390000012903 #15	ENSGT00390000000224 #16	ENSGT00940000177481 #18	ENSGT00940000153181 #17	ENSGT00440000038585.d #19	ENSGT00530000063156.a.a.b #20	ENSGT00940000156340.a.c #21	ENSGT00940000163205.c.h #22	ENSGT00940000163205.c.g #23	ENSGT01020000230351.D.a.a.b #24	ENSGT00940000163543.a #25	ENSGT00940000154687.B.q.b #26	ENSGT00940000165787.a.b.g.a #29	ENSGT00940000165787.a.b.g.b #28	ENSGT00940000154130.a.b.f #27	ENSGT00950000182888.a.b #30	ENSGT00390000004247 #31	ENSGT00400000024875.c.b #32	ENSGT00400000024875.c.a.a.a #33	ENSGT00400000024875.c.a.a.b.a.a.a.a ##35	ENSGT00400000024875.c.a.a.b.a.b.p.a #34	ENSGT00400000024875.c.a.a.b.a.b.o #35	ENSGT00940000159387.e #36
P. nyererei	MODERN SPECIES	333	cnot6l (ENSPNYG00000006717) #7	ENSPNYG00000006814 #8	EEIG1 (ENSPNYG00000006862) #9	slc25a25a (ENSPNYG00000006896) #10	zdhhc12a (ENSPNYG00000006930) #11	ENSPNYG00000006951 #12	SET (ENSPNYG00000006988) #13	si:ch211-51h9.7 (ENSPNYG00000007013) #14	gle1 (ENSPNYG00000007027) #15	ptgesl (ENSPNYG00000007045) #16	ralgds (ENSPNYG00000007083) #17	ENSPNYG00000007183 #18	SMARCB1 (ENSPNYG00000007201) #19	derl3 (ENSPNYG00000007239) #20	MMP11 (ENSPNYG00000007281) #21	gstt1a (ENSPNYG00000007334) #22	gstt1a (ENSPNYG00000007397) #23	p2rx7 (ENSPNYG00000007433) #24	GPR21 (ENSPNYG00000007627) #25	ENSPNYG00000007650 #26	sh2d3cb (ENSPNYG00000007723) #27	ENSPNYG00000007744 #28	ENSPNYG00000007753 #29	tor2a (ENSPNYG00000007767) #30	ptrh1 (ENSPNYG00000007789) #31	ENSPNYG00000007800 #32	ENSPNYG00000007808 #33	ENSPNYG00000007817 #34	ENSPNYG00000007829 #35	FAM163B (ENSPNYG00000007834) #36	ADAMTSL2 (ENSPNYG00000007852) #37
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT01000000214675.a #8	ENSGT00940000156811.a #9	ENSGT00940000157207.a.b #10	ENSGT00940000156902.a #11	ENSGT00940000164790.b #12	ENSGT00940000153877.a.b #13	ENSGT00530000065225 #14	ENSGT00530000063497.a.b	ENSGT00390000012903 #15	ENSGT00390000000224 #16	ENSGT00940000177481 #18	ENSGT00940000153181 #17	ENSGT00440000038585.d #19	ENSGT00530000063156.a.a.b #20	ENSGT00940000156340.a.c #21	ENSGT00940000163205.c.h #22	ENSGT00940000163205.c.g #23	ENSGT01020000230351.D.a.a.b #24	ENSGT00940000163543.a #25	ENSGT00940000154687.B.q.b #26	ENSGT00940000165787.a.b.g.a #29	ENSGT00940000165787.a.b.h ##29	ENSGT00940000165787.a.b.g.b #28	ENSGT00940000154130.a.b.f #27	ENSGT00950000182888.a.b #30	ENSGT00390000004247 #31	ENSGT00400000024875.c.b #32	ENSGT00400000024875.c.a.a.a #33	ENSGT00400000024875.c.a.a.b.a.a.a.a ##35	ENSGT00400000024875.c.a.a.b.a.b.p.a #34	ENSGT00400000024875.c.a.a.b.a.b.o #35
Eastern happy	MODERN SPECIES	3	ENSACLG00000000842 #8	EEIG1 (ENSACLG00000000773) #9	slc25a25a (ENSACLG00000000744) #10	zdhhc12a (ENSACLG00000000722) #11	ENSACLG00000000701 #12	SET (ENSACLG00000000683) #13	si:ch211-51h9.7 (ENSACLG00000000679) #14	odf2b (ENSACLG00000000651)	gle1 (ENSACLG00000000598) #15	ptgesl (ENSACLG00000000568) #16	ENSACLG00000000560 #18	ralgds (ENSACLG00000000484) #17	SMARCB1 (ENSACLG00000000461) #19	derl3 (ENSACLG00000000439) #20	MMP11 (ENSACLG00000000434) #21	gstt1a (ENSACLG00000000172) #22	gstt1a (ENSACLG00000000157) #23	ENSACLG00000000147	p2rx7 (ENSACLG00000025679) #24	GPR21 (ENSACLG00000025672) #25	ENSACLG00000025639 #26	ENSACLG00000025560 #29	ENSACLG00000025547 ##29	ENSACLG00000025541 #28	sh2d3cb (ENSACLG00000025496) #27	ENSACLG00000025490 ##29	ENSACLG00000025487 #29	tor2a (ENSACLG00000025481) #30	ENSACLG00000025471	ptrh1 (ENSACLG00000025462) #31	ENSACLG00000025458 #32
Zebra mbuna	MODERN SPECIES	1094	EEIG1 (ENSMZEG00005020220) #9	ENSMZEG00005020218	ENSMZEG00005020216	slc25a25a (ENSMZEG00005020213) #10	zdhhc12a (ENSMZEG00005020210) #11	ENSMZEG00005020205 #12	si:ch211-51h9.7 (ENSMZEG00005020203) #14	SET (ENSMZEG00005020199) #13	odf2b (ENSMZEG00005020190)	gle1 (ENSMZEG00005020182) #15	ptgesl (ENSMZEG00005020177) #16	ralgds (ENSMZEG00005020129) #17	SMARCB1 (ENSMZEG00005020105) #19	derl3 (ENSMZEG00005020099) #20	MMP11 (ENSMZEG00005020095) #21	gstt1a (ENSMZEG00005020082) #22	gstt1a (ENSMZEG00005020077) #23	p2rx7 (ENSMZEG00005020072) #24	GPR21 (ENSMZEG00005020069) #25	ENSMZEG00005020033 #26	ENSMZEG00005020022 #29	ENSMZEG00005020020 ##29	ENSMZEG00005020017 #28	sh2d3cb (ENSMZEG00005020011) #27	tor2a (ENSMZEG00005020008) #30	ptrh1 (ENSMZEG00005020001) #31	ENSMZEG00005019998 #32	ENSMZEG00005019992 #33	ENSMZEG00005019973 ##35	ENSMZEG00005019970 ##35	ENSMZEG00005019966 #35
Burton s mouthbrooder	MODERN SPECIES	920			EEIG1 (ENSHBUG00000011044) #9	slc25a25a (ENSHBUG00000010942) #10	zdhhc12a (ENSHBUG00000010888) #11	ENSHBUG00000010880 #12	SET (ENSHBUG00000010839) #13	si:ch211-51h9.7 (ENSHBUG00000010818) #14	odf2b (ENSHBUG00000010813)	gle1 (ENSHBUG00000010794) #15	ptgesl (ENSHBUG00000010774) #16	ralgds (ENSHBUG00000010721) #17	SMARCB1 (ENSHBUG00000010668) #19	derl3 (ENSHBUG00000010631) #20	ENSHBUG00000010604 #21	gstt1a (ENSHBUG00000010588) #22