Euteleostomi	ANCESTRAL SPECIES	63	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00940000156614.b	ENSGT00940000163734	ENSGT00550000074913	ENSGT00390000017551	ENSGT00530000063996.b	ENSGT00940000157636	ENSGT00940000158573	ENSGT00940000157747	ENSGT00940000159507	ENSGT00390000017592	ENSGT00940000159293	ENSGT00390000015109	ENSGT00950000182960.a.a.b	ENSGT00950000182960.a.a.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT01050000244891.B #14
Sarcopterygii	ANCESTRAL SPECIES	24	ENSGT00410000026495.C	ENSGT00390000018731	ENSGT00940000160874	ENSGT00390000013260.B	ENSGT00390000003596	ENSGT00390000004169	ENSGT00950000182961.a.a.a	ENSGT00940000160948	ENSGT00950000182983.A.a.a	ENSGT00940000160989	ENSGT00940000163996	ENSGT00950000183060.a.b.a	ENSGT00390000003718	ENSGT00940000155761	ENSGT00940000161435.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00390000001055	ENSGT00390000017136	ENSGT00940000156544.a	ENSGT00390000006167	ENSGT00940000158269	ENSGT01030000234586.B.a.a	ENSGT01080000257365.a	ENSGT00940000157836	ENSGT00940000158172	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.b	ENSGT00950000183183.a ##18	ENSGT00940000156833
Tetrapoda	ANCESTRAL SPECIES	30	ENSGT00410000026495.C	ENSGT00390000018731	ENSGT00940000160874	ENSGT00390000013260.B	ENSGT00390000003596	ENSGT00390000004169	ENSGT00950000182961.a.a.a	ENSGT00940000160948	ENSGT00950000182983.A.a.a	ENSGT00940000160989	ENSGT00940000163996	ENSGT00950000183060.a.b.a	ENSGT00390000003718	ENSGT00940000155761	ENSGT00940000161435.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00390000001055	ENSGT00390000017136	ENSGT00940000156544.a	ENSGT00390000006167	ENSGT00940000158269	ENSGT01030000234586.B.a.a	ENSGT01080000257365.a	ENSGT00940000157836	ENSGT00940000158172	ENSGT00940000162673	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.b	ENSGT00950000183183.a ##18
Amniota	ANCESTRAL SPECIES	11	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00390000013965	ENSGT01090000260051.b.a.b	ENSGT00940000157017.a.b.a	ENSGT00940000156819.a.b	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Mammalia	ANCESTRAL SPECIES	11	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000156819.a.b	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Theria	ANCESTRAL SPECIES	10	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000156819.a.b	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Eutheria	ANCESTRAL SPECIES	22	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592
Boreoeutheria	ANCESTRAL SPECIES	12	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j #35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a
Euarchontoglires	ANCESTRAL SPECIES	12	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j #35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592
Euarchontoglires_A	ANCESTRAL SPECIES	12	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j #35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607
Glires	ANCESTRAL SPECIES	11	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a #35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607
Rodentia	ANCESTRAL SPECIES	11	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.b ##35	ENSGT01090000260018.B.b	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607	ENSGT00940000153104.e.b.b
Rodentia_B	ANCESTRAL SPECIES	29	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.a.b #33	ENSGT00950000182958.a.b.b.j.a.a.b ##35	ENSGT00950000182958.a.b.b.j.a.b ##35	ENSGT01090000260018.B.b	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607.d	ENSGT00950000182890.D.c.a.b	ENSGT00940000153104.e.b.b
Myomorpha	ANCESTRAL SPECIES	31	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.a.a #35	ENSGT00950000182958.a.b.b.j.a.b ##35	ENSGT01090000260018.B.b	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607.d	ENSGT00950000182890.D.c.a.b	ENSGT00940000153104.e.b.b	ENSGT00950000183073.a.a.b
Muroidea	ANCESTRAL SPECIES	51	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.c #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.a.b #33	ENSGT00950000182958.a.b.b.j.a.a.a.a #35
Muroidea_A	ANCESTRAL SPECIES	27	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.c #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.a.b #33	ENSGT00950000182958.a.b.b.j.a.a.a.a #35	ENSGT00940000158530.j	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a	ENSGT00940000153284.a.h	ENSGT00950000182922.a.a.b.d	ENSGT00940000161208	ENSGT00940000155647
Murinae	ANCESTRAL SPECIES	28	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.c #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.a.b #33	ENSGT00950000182958.a.b.b.j.a.a.a.a #35	ENSGT00940000158530.j	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a	ENSGT00940000153284.a.h	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000161208	ENSGT00940000155647
Mus	ANCESTRAL SPECIES	17	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.c #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.b ##35	ENSGT00950000182958.a.b.b.j.a.a.a.a.d #28	ENSGT00950000182958.a.b.b.j.a.a.a.b #33	ENSGT00950000182958.a.b.b.j.a.a.a.a.c #35	ENSGT00940000158530.j	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a	ENSGT00940000153284.a.h	ENSGT00950000182922.a.a.b.c.c.b
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000156012.q #16	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b.w #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.c #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.b ##35	ENSGT00950000182958.a.b.b.j.a.a.a.a.d #28	ENSGT00950000182958.a.b.b.j.a.a.a.b #33	ENSGT00950000182958.a.b.b.j.a.a.a.a.c #35	ENSGT00940000158530.j	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a	ENSGT00940000153284.a.h	ENSGT00950000182922.a.a.b.c.c.b
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000156012.q #16	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b.w #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.c #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.a.a.d #28	ENSGT00950000182958.a.b.b.j.a.a.a.b.j #29	ENSGT00950000182958.a.b.b.j.a.a.a.b.i.b #33	ENSGT00950000182958.a.b.b.j.a.a.a.a.c.a.a #34	ENSGT00940000158530.j	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a	ENSGT00940000153284.a.h	ENSGT00950000182922.a.a.b.c.c.b
Mouse	MODERN SPECIES	14	Tecpr1 (ENSMUSG00000066621) #7	Bri3 (ENSMUSG00000047843) #8	Baiap2l1 (ENSMUSG00000038859) #9	Nptx2 (ENSMUSG00000059991) #10	Tmem130 (ENSMUSG00000043388) #11	Trrap (ENSMUSG00000045482) #12	Smurf1 (ENSMUSG00000038780) #13	Kpna7 (ENSMUSG00000038770) #14	Gm4871 (ENSMUSG00000061707) #15	1700018F24Rik (ENSMUSG00000029620) #16	Arpc1a (ENSMUSG00000029621) #17	Arpc1b (ENSMUSG00000029622) #18	Pdap1 (ENSMUSG00000029623) #19	Bud31 (ENSMUSG00000038722) #20	Ptcd1 (ENSMUSG00000029624) #21	Cpsf4 (ENSMUSG00000029625) #22	Atp5j2 (ENSMUSG00000038690) #23	Zkscan14 (ENSMUSG00000029627) #24	Zkscan5 (ENSMUSG00000055991) #25	Zfp655 (ENSMUSG00000007812) #26	Zscan25 (ENSMUSG00000070420) #27	Cyp3a57 (ENSMUSG00000070419) #28	Cyp3a16 (ENSMUSG00000038656) #29	Cyp3a41b (ENSMUSG00000075552) #30	Cyp3a41a (ENSMUSG00000075551) #31	Cyp3a44 (ENSMUSG00000054417) #32	Cyp3a11 (ENSMUSG00000056035) #33	Cyp3a25 (ENSMUSG00000029630) #34	Cyp3a59 (ENSMUSG00000061292) #35	Gm5565 (ENSMUSG00000104752) #36	Gm6309 (ENSMUSG00000096798) #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000156012.q #16	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b.w #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.c #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00940000155423.e.b ##37	ENSGT00940000158530.j	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a	ENSGT00940000153284.a.h	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000161208	ENSGT00940000155647	ENSGT00390000014424
spretus	MODERN SPECIES	14	Lmtk2 (MGP_SPRETEiJ_G0028998)	Bhlha15 (MGP_SPRETEiJ_G0028999)	Tecpr1 (MGP_SPRETEiJ_G0029000) #7	Bri3 (MGP_SPRETEiJ_G0029001) #8	Baiap2l1 (MGP_SPRETEiJ_G0029002) #9	Nptx2 (MGP_SPRETEiJ_G0029003) #10	Tmem130 (MGP_SPRETEiJ_G0029004) #11	Trrap (MGP_SPRETEiJ_G0029005) #12	Smurf1 (MGP_SPRETEiJ_G0029006) #13	Kpna7 (MGP_SPRETEiJ_G0029007) #14	Arpc1a (MGP_SPRETEiJ_G0029008) #17	MGP_SPRETEiJ_G0029009 #18	Pdap1 (MGP_SPRETEiJ_G0029010) #19	Bud31 (MGP_SPRETEiJ_G0029011) #20	Ptcd1 (MGP_SPRETEiJ_G0029012) #21	Cpsf4 (MGP_SPRETEiJ_G0029013) #22	Atp5j2 (MGP_SPRETEiJ_G0029014) #23	Zkscan14 (MGP_SPRETEiJ_G0029015) #24	Zkscan5 (MGP_SPRETEiJ_G0029016) #25	Zfp655 (MGP_SPRETEiJ_G0029017) #26	Zscan25 (MGP_SPRETEiJ_G0029018) #27	MGP_SPRETEiJ_G0029019 #34	MGP_SPRETEiJ_G0029020 #34	MGP_SPRETEiJ_G0029021 #34	Rnf6 (MGP_SPRETEiJ_G0029022)	Cdk8 (MGP_SPRETEiJ_G0029023)	Wasf3 (MGP_SPRETEiJ_G0029024)	Gpr12 (MGP_SPRETEiJ_G0029025)	Usp12 (MGP_SPRETEiJ_G0029026)	MGP_SPRETEiJ_G0029027	Rasl11a (MGP_SPRETEiJ_G0029028)
Steppe mouse	MODERN SPECIES	3370	ENSMSIG00000029259	Baiap2l1 (ENSMSIG00000029242) #9	ENSMSIG00000029239	Nptx2 (ENSMSIG00000029233) #10	Tmem130 (ENSMSIG00000029228) #11	Trrap (ENSMSIG00000029078) #12	Smurf1 (ENSMSIG00000029028) #13	ENSMSIG00000029026 #14	ENSMSIG00000029019 #16	Arpc1a (ENSMSIG00000029008) #17	ENSMSIG00000029006	Arpc1b (ENSMSIG00000028992) #18	Pdap1 (ENSMSIG00000028982) #19	Bud31 (ENSMSIG00000028973) #20	Ptcd1 (ENSMSIG00000028962) #21	Cpsf4 (ENSMSIG00000028934) #22	Atp5j2 (ENSMSIG00000028928) #23	ENSMSIG00000028921 #24	Zkscan5 (ENSMSIG00000028906) #25	Zscan25 (ENSMSIG00000028875) #27
Ryukyu mouse	MODERN SPECIES	14	Tecpr1 (MGP_CAROLIEiJ_G0027997) #7	Bri3 (MGP_CAROLIEiJ_G0027998) #8	Baiap2l1 (MGP_CAROLIEiJ_G0027999) #9	Nptx2 (MGP_CAROLIEiJ_G0028000) #10	Tmem130 (MGP_CAROLIEiJ_G0028001) #11	Trrap (MGP_CAROLIEiJ_G0028002) #12	Smurf1 (MGP_CAROLIEiJ_G0028003) #13	Kpna7 (MGP_CAROLIEiJ_G0028004) #14	MGP_CAROLIEiJ_G0028005 #16	MGP_CAROLIEiJ_G0028006 #16	Arpc1a (MGP_CAROLIEiJ_G0028007) #17	Arpc1b (MGP_CAROLIEiJ_G0028008) #18	Pdap1 (MGP_CAROLIEiJ_G0028009) #19	Bud31 (MGP_CAROLIEiJ_G0028010) #20	Ptcd1 (MGP_CAROLIEiJ_G0028011) #21	Cpsf4 (MGP_CAROLIEiJ_G0028012) #22	Atp5j2 (MGP_CAROLIEiJ_G0028013) #23	Zkscan14 (MGP_CAROLIEiJ_G0028014) #24	Zkscan5 (MGP_CAROLIEiJ_G0028015) #25	Zfp655 (MGP_CAROLIEiJ_G0028016) #26	MGP_CAROLIEiJ_G0028017 #27	MGP_CAROLIEiJ_G0028018 ##35	MGP_CAROLIEiJ_G0028020 ##37	MGP_CAROLIEiJ_G0028022 ##37	MGP_CAROLIEiJ_G0028021 ##37	MGP_CAROLIEiJ_G0028023 ##37	Rnf6 (MGP_CAROLIEiJ_G0028024)	Cdk8 (MGP_CAROLIEiJ_G0028025)	Wasf3 (MGP_CAROLIEiJ_G0028026)	Gpr12 (MGP_CAROLIEiJ_G0028027)	Usp12 (MGP_CAROLIEiJ_G0028028)
Shrew mouse	MODERN SPECIES	15	Lmtk2 (MGP_PahariEiJ_G0024566)	Bhlha15 (MGP_PahariEiJ_G0024567)	Tecpr1 (MGP_PahariEiJ_G0024568) #7	Bri3 (MGP_PahariEiJ_G0024569) #8	Baiap2l1 (MGP_PahariEiJ_G0024570) #9	Nptx2 (MGP_PahariEiJ_G0024571) #10	Tmem130 (MGP_PahariEiJ_G0024572) #11	Trrap (MGP_PahariEiJ_G0024573) #12	Smurf1 (MGP_PahariEiJ_G0024574) #13	Kpna7 (MGP_PahariEiJ_G0024575) #14	MGP_PahariEiJ_G0024576 #17	Arpc1b (MGP_PahariEiJ_G0024577) #18	Pdap1 (MGP_PahariEiJ_G0024578) #19	Bud31 (MGP_PahariEiJ_G0024579) #20	Ptcd1 (MGP_PahariEiJ_G0024580) #21	Cpsf4 (MGP_PahariEiJ_G0024581) #22	Atp5j2 (MGP_PahariEiJ_G0024582) #23	Zkscan14 (MGP_PahariEiJ_G0024583) #24	Zkscan5 (MGP_PahariEiJ_G0024584) #25	Zfp655 (MGP_PahariEiJ_G0024585) #26	Zscan25 (MGP_PahariEiJ_G0024586) #27	MGP_PahariEiJ_G0024587 #35	MGP_PahariEiJ_G0024589 #35	MGP_PahariEiJ_G0024588 #35	Rnf6 (MGP_PahariEiJ_G0024590)	Cdk8 (MGP_PahariEiJ_G0024591)	Wasf3 (MGP_PahariEiJ_G0024592)	Gpr12 (MGP_PahariEiJ_G0024593)	Usp12 (MGP_PahariEiJ_G0024594)	MGP_PahariEiJ_G0024595	Rasl11a (MGP_PahariEiJ_G0024596)
Rat	DUPLICATION
Rat	DUPLICATION
Rat	MODERN SPECIES	3	Tecpr1 (ENSRNOG00000001010) #7	Bri3 (ENSRNOG00000001009) #8	Baiap2l1 (ENSRNOG00000001007) #9	RGD1565131 (ENSRNOG00000025212)	LOC100360200 (ENSRNOG00000025217) #22	Nptx2 (ENSRNOG00000001006) #10	Tmem130 (ENSRNOG00000025235) #11	Trrap (ENSRNOG00000025244) #12	Smurf1 (ENSRNOG00000000999) #13	Kpna7 (ENSRNOG00000042296) #14	Arpc1a (ENSRNOG00000000996) #17	Arpc1b (ENSRNOG00000000991) #18	Pdap1 (ENSRNOG00000000990) #19	Bud31 (ENSRNOG00000000989) #20	Ptcd1 (ENSRNOG00000000987) #21	Cpsf4 (ENSRNOG00000000985) #22	Atp5mf (ENSRNOG00000027049) #23	Zfp394 (ENSRNOG00000000983) #24	Zkscan5 (ENSRNOG00000059552) #25	Zfp655 (ENSRNOG00000060129) #26	Zscan25 (ENSRNOG00000042213) #27	Cyp3a23-3a1 (ENSRNOG00000067532) #33	ENSRNOG00000062654 #35	ENSRNOG00000063231 #33	Cyp3a23-3a1 (ENSRNOG00000062027) #33	Cyp3a2 (ENSRNOG00000032560) #33	Cyp3a73 (ENSRNOG00000047745) #33	Cyp3a73 (ENSRNOG00000000978) #33	Cyp3a18 (ENSRNOG00000000969) #35	Rnf6 (ENSRNOG00000000968)	AABR07035338.1 (ENSRNOG00000039819)
Rat	MODERN SPECIES	3	Zfp655 (ENSRNOG00000060129) #26	Zkscan5 (ENSRNOG00000059552) #25	Zfp394 (ENSRNOG00000000983) #24	Atp5mf (ENSRNOG00000027049) #23	Cpsf4 (ENSRNOG00000000985) #22	Ptcd1 (ENSRNOG00000000987) #21	Bud31 (ENSRNOG00000000989) #20	Pdap1 (ENSRNOG00000000990) #19	Arpc1b (ENSRNOG00000000991) #18	Arpc1a (ENSRNOG00000000996) #17	Kpna7 (ENSRNOG00000042296) #14	Smurf1 (ENSRNOG00000000999) #13	Trrap (ENSRNOG00000025244) #12	Tmem130 (ENSRNOG00000025235) #11	Nptx2 (ENSRNOG00000001006) #10	LOC100360200 (ENSRNOG00000025217) #22	RGD1565131 (ENSRNOG00000025212)	Baiap2l1 (ENSRNOG00000001007) #9	Bri3 (ENSRNOG00000001009) #8	Tecpr1 (ENSRNOG00000001010) #7	Bhlha15 (ENSRNOG00000025164)	Lmtk2 (ENSRNOG00000025155)	Ocm (ENSRNOG00000001031)	Ccz1b (ENSRNOG00000001032)	Rsph10b (ENSRNOG00000001036)	Pms2 (ENSRNOG00000001040)	Aimp2 (ENSRNOG00000001044)	Eif2ak1 (ENSRNOG00000001050)	Ankrd61 (ENSRNOG00000001048)	Usp42 (ENSRNOG00000001059)	Cyth3 (ENSRNOG00000001065)
Rat	MODERN SPECIES	46	Plp2 (ENSRNOG00000039496)	Prickle3 (ENSRNOG00000022417)	Syp (ENSRNOG00000059720)	Cacna1f (ENSRNOG00000010348)	Ccdc22 (ENSRNOG00000010846)	Foxp3 (ENSRNOG00000011702)	Ppp1r3f (ENSRNOG00000068767)	ENSRNOG00000066758	ENSRNOG00000065488	AABR07037203.1 (ENSRNOG00000028611)	Usp27x (ENSRNOG00000002844)	Clcn5 (ENSRNOG00000002862)	Akap4 (ENSRNOG00000002921)	Ccnb3 (ENSRNOG00000002951)	Dgkk (ENSRNOG00000039323)	Cpsf4-ps1 (ENSRNOG00000062241) #22	Shroom4 (ENSRNOG00000002959)	AABR07037243.1 (ENSRNOG00000002975)	Bmp15 (ENSRNOG00000002984)	Nudt11 (ENSRNOG00000046053)	Ezhip (ENSRNOG00000039305)	Smptb (ENSRNOG00000028033)	Smptb (ENSRNOG00000066859)	ENSRNOG00000067767	LOC120099275 (ENSRNOG00000030417)	LOC302576 (ENSRNOG00000066885)	Mycs (ENSRNOG00000003085)	ENSRNOG00000063942	ENSRNOG00000069398	RGD1565862 (ENSRNOG00000068201)	Spin2b (ENSRNOG00000062360)
Cricetidae	ANCESTRAL SPECIES	27	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.c #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.a.b #33	ENSGT00950000182958.a.b.b.j.a.a.a.a #35	ENSGT00940000158530.j.a	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a	ENSGT00940000153284.a.h	ENSGT00950000182922.a.a.b.d	ENSGT00940000161208	ENSGT00940000155647
Cricetidae_B	ANCESTRAL SPECIES	46	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.c #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26
Northern American deer mouse	MODERN SPECIES	15	Bhlha15 (ENSPEMG00000009777)	Tecpr1 (ENSPEMG00000002374) #7	Bri3 (ENSPEMG00000009259) #8	Baiap2l1 (ENSPEMG00000016921) #9	Nptx2 (ENSPEMG00000004530) #10	ENSPEMG00000030777	Tmem130 (ENSPEMG00000017312) #11	Trrap (ENSPEMG00000007905) #12	Smurf1 (ENSPEMG00000004784) #13	Kpna7 (ENSPEMG00000017218) #14	Arpc1a (ENSPEMG00000013996) #17	Arpc1b (ENSPEMG00000017147) #18	ENSPEMG00000015747 #19	Bud31 (ENSPEMG00000010947) #20	Ptcd1 (ENSPEMG00000013736) #21	Cpsf4 (ENSPEMG00000004508) #22	Atp5j2 (ENSPEMG00000013672) #23	Zkscan14 (ENSPEMG00000011797) #24	Zkscan5 (ENSPEMG00000010963) #25	ENSPEMG00000011222	ENSPEMG00000030363	ENSPEMG00000029204 #33	ENSPEMG00000031372	ENSPEMG00000026224 #33	Rxfp2 (ENSPEMG00000018554)	B3glct (ENSPEMG00000015898)	ENSPEMG00000025164	Hsph1 (ENSPEMG00000009941)	Wdr95 (ENSPEMG00000016428)	Tex26 (ENSPEMG00000019024)	Medag (ENSPEMG00000000331)
Prairie vole	MODERN SPECIES	110														Bud31 (ENSMOCG00000017115) #20	ENSMOCG00000016192	Cpsf4 (ENSMOCG00000014901) #22	Atp5j2 (ENSMOCG00000003786) #23	Zkscan5 (ENSMOCG00000011909) #25	Zfp655 (ENSMOCG00000019962) #26	Pdap1 (ENSMOCG00000015800) #19	Arpc1b (ENSMOCG00000010471) #18	Arpc1a (ENSMOCG00000020844) #17	Kpna7 (ENSMOCG00000012853) #14	Smurf1 (ENSMOCG00000010176) #13	Trrap (ENSMOCG00000000272) #12	Tmem130 (ENSMOCG00000015764) #11	Nptx2 (ENSMOCG00000011501) #10	Baiap2l1 (ENSMOCG00000002763) #9	Bri3 (ENSMOCG00000007653) #8	Tecpr1 (ENSMOCG00000021771) #7	Lmtk2 (ENSMOCG00000019505)
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.c #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00950000182958.a.b.b.j.a.a.a.b.b #33	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.a.b.a #33	ENSGT00950000182958.a.b.b.j.a.a.a.a #35	ENSGT00940000158530.j.a	ENSGT00940000157104	ENSGT00950000182962.a.a	ENSGT01060000248564.b.a.b.a	ENSGT00940000153284.a.h	ENSGT00950000182922.a.a.b.d	ENSGT00940000161208
Chinese hamster chok1gshd	MODERN SPECIES	130	Tecpr1 (ENSCGRG00001010075) #7	Bri3 (ENSCGRG00001003030) #8	Baiap2l1 (ENSCGRG00001018597) #9	ENSCGRG00001012810	Nptx2 (ENSCGRG00001001038) #10	Tmem130 (ENSCGRG00001017171) #11	ENSCGRG00001014941	Trrap (ENSCGRG00001015326) #12	Smurf1 (ENSCGRG00001020132) #13	Kpna7 (ENSCGRG00001007501) #14	ENSCGRG00001021831 #17	ENSCGRG00001021035 #18	Pdap1 (ENSCGRG00001016829) #19	Bud31 (ENSCGRG00001012044) #20	Ptcd1 (ENSCGRG00001023686) #21	Cpsf4 (ENSCGRG00001024184) #22	Atp5j2 (ENSCGRG00001016065) #23	Zkscan14 (ENSCGRG00001014948) #24	Zkscan5 (ENSCGRG00001021752) #25	Zfp655 (ENSCGRG00001016484) #26	ENSCGRG00001019977 #33	Zscan25 (ENSCGRG00001017680) #27	ENSCGRG00001010181 #33	ENSCGRG00001023511 #35	ENSCGRG00001020483	Rnf6 (ENSCGRG00001010459)	Cdk8 (ENSCGRG00001010747)	Wasf3 (ENSCGRG00001003303)	Gpr12 (ENSCGRG00001003285)	ENSCGRG00001021742	Rpl21 (ENSCGRG00001007602)
Golden Hamster	MODERN SPECIES	712	Lmtk2 (ENSMAUG00000014353)	Tecpr1 (ENSMAUG00000008072) #7	Bri3 (ENSMAUG00000000701) #8	Baiap2l1 (ENSMAUG00000008280) #9	Nptx2 (ENSMAUG00000017629) #10	ENSMAUG00000000660	Tmem130 (ENSMAUG00000020273) #11	Trrap (ENSMAUG00000015855) #12	Smurf1 (ENSMAUG00000000511) #13	Kpna7 (ENSMAUG00000019165) #14	ENSMAUG00000014235 #17	ENSMAUG00000003299 #18	Pdap1 (ENSMAUG00000011742) #19	Bud31 (ENSMAUG00000016405) #20	ENSMAUG00000011008	Cpsf4 (ENSMAUG00000021253) #22	Atp5j2 (ENSMAUG00000018419) #23	Zkscan5 (ENSMAUG00000014532) #25	Zscan25 (ENSMAUG00000012364) #27	ENSMAUG00000013270 #33	ENSMAUG00000011782 #35	Rnf6 (ENSMAUG00000014438)	ENSMAUG00000013390	Wasf3 (ENSMAUG00000004464)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1850	Bhlha15 (ENSNGAG00000011836)	Tecpr1 (ENSNGAG00000013589) #7	Bri3 (ENSNGAG00000013902) #8	Baiap2l1 (ENSNGAG00000018325) #9	ENSNGAG00000014139	Nptx2 (ENSNGAG00000013356) #10	Tmem130 (ENSNGAG00000017786) #11	Trrap (ENSNGAG00000022892) #12	Smurf1 (ENSNGAG00000008962) #13	Kpna7 (ENSNGAG00000021193) #14	ENSNGAG00000018383 #17	Arpc1b (ENSNGAG00000015329) #18	Pdap1 (ENSNGAG00000017370) #19	ENSNGAG00000002694 #20	ENSNGAG00000015871	Cpsf4 (ENSNGAG00000001567) #22	ENSNGAG00000018916 #23	Zkscan14 (ENSNGAG00000023424) #24	ENSNGAG00000023612	Zkscan5 (ENSNGAG00000017855) #25	Zfp655 (ENSNGAG00000008217) #26	Zscan25 (ENSNGAG00000021657) #27	ENSNGAG00000010294 #33	ENSNGAG00000000778 #35
Lesser Egyptian jerboa	MODERN SPECIES	250							Eif3b (ENSJJAG00000014658)	Trrap (ENSJJAG00000015572) #12	Smurf1 (ENSJJAG00000011991) #13	Kpna7 (ENSJJAG00000010612) #14	ENSJJAG00000011076 #17	Arpc1b (ENSJJAG00000010687) #18	ENSJJAG00000008855 #19	Bud31 (ENSJJAG00000007925) #20	Ptcd1 (ENSJJAG00000000319) #21	Cpsf4 (ENSJJAG00000019426) #22	Atp5j2 (ENSJJAG00000018319) #23	Zkscan14 (ENSJJAG00000017218) #24	Zkscan5 (ENSJJAG00000017033) #25
Kangaroo rat	MODERN SPECIES	387	Lmtk2 (ENSDORG00000003934)	Bhlha15 (ENSDORG00000026874)	Tecpr1 (ENSDORG00000003936) #7	ENSDORG00000027487	Baiap2l1 (ENSDORG00000007704) #9	Nptx2 (ENSDORG00000002048) #10	Tmem130 (ENSDORG00000008927) #11	Trrap (ENSDORG00000016733) #12	Smurf1 (ENSDORG00000001289) #13	Kpna7 (ENSDORG00000001481) #14	ENSDORG00000016059 #17	Arpc1b (ENSDORG00000000737) #18	Pdap1 (ENSDORG00000000738) #19	ENSDORG00000000739 #20	Ptcd1 (ENSDORG00000000740) #21	Cpsf4 (ENSDORG00000000742) #22	Atp5j2 (ENSDORG00000000743) #23	Zkscan14 (ENSDORG00000006843) #24	ENSDORG00000027431	ENSDORG00000029957	Zscan25 (ENSDORG00000024526) #27	ENSDORG00000030120	ENSDORG00000012448 ##35	ENSDORG00000027377 ##35	Gjc3 (ENSDORG00000004757)	Zkscan1 (ENSDORG00000025152)	Zscan21 (ENSDORG00000009833)	Zfp113 (ENSDORG00000000945)	Cops6 (ENSDORG00000024208)	ENSDORG00000000946	Ap4m1 (ENSDORG00000019826)
Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.b ##35	ENSGT01090000260018.B.b	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607	ENSGT00940000153104.e.b.b
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.a.a #35	ENSGT00950000182958.a.b.b.j.a.a.b ##35	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607	ENSGT00940000153104.e.b.b	ENSGT00950000183073.a.a.b	ENSGT01050000244824.C
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.a.a #35	ENSGT00950000182958.a.b.b.j.a.a.b ##35	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607	ENSGT00940000153104.e.b.b	ENSGT00950000183073.a.a.b	ENSGT01050000244824.C
Guinea pig	MODERN SPECIES	30	LMTK2 (ENSCPOG00000009408)	BHLHA15 (ENSCPOG00000033368)	TECPR1 (ENSCPOG00000010430) #7	BRI3 (ENSCPOG00000025281) #8	BAIAP2L1 (ENSCPOG00000009274) #9	NPTX2 (ENSCPOG00000012135) #10	TMEM130 (ENSCPOG00000010669) #11	TRRAP (ENSCPOG00000007298) #12	SMURF1 (ENSCPOG00000000124) #13	KPNA7 (ENSCPOG00000014326) #14	ENSCPOG00000001777 #17	ARPC1B (ENSCPOG00000020413) #18	PDAP1 (ENSCPOG00000023217) #19	BUD31 (ENSCPOG00000001779) #20	PTCD1 (ENSCPOG00000001780) #21	CPSF4 (ENSCPOG00000001783) #22	ENSCPOG00000034651	ZNF394 (ENSCPOG00000013321) #24	ZKSCAN5 (ENSCPOG00000032578) #25	ZNF655 (ENSCPOG00000032275) #26	ZSCAN25 (ENSCPOG00000031211) #27	Cyp3a14 (ENSCPOG00000001589) #35	ENSCPOG00000024937 #35	ENSCPOG00000012976 #35	ENSCPOG00000020375 ##35	ENSCPOG00000022315 ##35	GJC3 (ENSCPOG00000012551)	AZGP1 (ENSCPOG00000030246)	ZKSCAN1 (ENSCPOG00000005770)	ZSCAN21 (ENSCPOG00000015351)	ZNF3 (ENSCPOG00000010860)
Hystricomorpha_b	ANCESTRAL SPECIES	55	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	57	CDK15 (ENSODEG00000009574)	FZD7 (ENSODEG00000010108)	ENSODEG00000012987	NOP58 (ENSODEG00000010151)	BMPR2 (ENSODEG00000011132)	ENSODEG00000010517	FAM117B (ENSODEG00000010132)	ENSODEG00000010913	ENSODEG00000010403	ENSODEG00000009897	ENSODEG00000011455	WDR12 (ENSODEG00000011602)	CARF (ENSODEG00000011312)	NBEAL1 (ENSODEG00000010440)	CYP20A1 (ENSODEG00000010253)	ENSODEG00000009779 #22	ABI2 (ENSODEG00000009457)	ENSODEG00000013477	CTLA4 (ENSODEG00000009327)	ENSODEG00000010295	ICOS (ENSODEG00000011327)	ENSODEG00000009131	ENSODEG00000010021	PARD3B (ENSODEG00000012523)	ENSODEG00000010455	INO80D (ENSODEG00000009769)	ENSODEG00000019630	ENSODEG00000008842	ENSODEG00000009030	ENSODEG00000008974	ENSODEG00000010229
Degu	MODERN SPECIES	49	ENSODEG00000018270	CTNND2 (ENSODEG00000018402)	DAP (ENSODEG00000018321)	ANKRD33B (ENSODEG00000018446)	ROPN1L (ENSODEG00000018356)	MARCHF6 (ENSODEG00000018354)	ENSODEG00000018315	CMBL (ENSODEG00000018386)	ENSODEG00000018260	ATPSCKMT (ENSODEG00000018372)	ENSODEG00000018296	SEMA5A (ENSODEG00000018380)	ENSODEG00000018330	FASTKD3 (ENSODEG00000018378)	ADCY2 (ENSODEG00000018279)	ENSODEG00000018283 #22	TENT4A (ENSODEG00000018357)	SRD5A1 (ENSODEG00000018442)	NSUN2 (ENSODEG00000018305)	ENSODEG00000018291	UBE2QL1 (ENSODEG00000018284)	MED10 (ENSODEG00000018285)	ENSODEG00000018433	ENSODEG00000018278	ADAMTS16 (ENSODEG00000018405)	IRX1 (ENSODEG00000018349)	IRX2 (ENSODEG00000018250)	IRX4 (ENSODEG00000018434)	NDUFS6 (ENSODEG00000018267)	ENSODEG00000018308	LPCAT1 (ENSODEG00000018339)
Degu	MODERN SPECIES	72	ENSODEG00000011251	ENSODEG00000011077	LMTK2 (ENSODEG00000012233)	TECPR1 (ENSODEG00000011578) #7	BRI3 (ENSODEG00000010514) #8	BAIAP2L1 (ENSODEG00000010504) #9	ENSODEG00000012635	NPTX2 (ENSODEG00000011311) #10	TMEM130 (ENSODEG00000010706) #11	TRRAP (ENSODEG00000013196) #12	SMURF1 (ENSODEG00000012098) #13	ENSODEG00000010891 #17	ARPC1B (ENSODEG00000011865) #18	ENSODEG00000012197 #19	BUD31 (ENSODEG00000011226) #20	ENSODEG00000011181 #22	ENSODEG00000012299	ZKSCAN5 (ENSODEG00000012014) #25	ZNF655 (ENSODEG00000011702) #26	ZSCAN25 (ENSODEG00000012099) #27
Long-tailed chinchilla	MODERN SPECIES	167	LMTK2 (ENSCLAG00000005806)	BHLHA15 (ENSCLAG00000006581)	TECPR1 (ENSCLAG00000006941) #7	BRI3 (ENSCLAG00000012095) #8	BAIAP2L1 (ENSCLAG00000013528) #9	NPTX2 (ENSCLAG00000013930) #10	TMEM130 (ENSCLAG00000006489) #11	TRRAP (ENSCLAG00000007110) #12	SMURF1 (ENSCLAG00000005211) #13	KPNA7 (ENSCLAG00000006067) #14	ARPC1A (ENSCLAG00000006964) #17	ARPC1B (ENSCLAG00000006996) #18	PDAP1 (ENSCLAG00000007628) #19	BUD31 (ENSCLAG00000008079) #20	PTCD1 (ENSCLAG00000006354) #21	CPSF4 (ENSCLAG00000007050) #22	ATP5MF (ENSCLAG00000004636) #23	ZNF394 (ENSCLAG00000005098) #24	ZKSCAN5 (ENSCLAG00000006450) #25	ZNF655 (ENSCLAG00000012856) #26	TMEM225B (ENSCLAG00000007073)	ZSCAN25 (ENSCLAG00000006740) #27
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000032492	BAIAP2L1 (ENSHGLG00000017707) #9	ENSHGLG00000044552	ENSHGLG00000007737 #10	ENSHGLG00000042548	TMEM130 (ENSHGLG00000008380) #11	TRRAP (ENSHGLG00000013805) #12	SMURF1 (ENSHGLG00000006003) #13	ENSHGLG00000009628 #14	ENSHGLG00000043221	ENSHGLG00000017246 #17	ARPC1B (ENSHGLG00000017816) #18	PDAP1 (ENSHGLG00000013857) #19	ENSHGLG00000018123 #20	PTCD1 (ENSHGLG00000017621) #21	ENSHGLG00000017150 #22	ENSHGLG00000006068 #23	ENSHGLG00000006453	ZNF394 (ENSHGLG00000033544) #24	ZKSCAN5 (ENSHGLG00000009175) #25	ZNF655 (ENSHGLG00000005530) #26	ENSHGLG00000040144 #27	ENSHGLG00000033148	ENSHGLG00000038153	ENSHGLG00000041246	ENSHGLG00000000859	HS3ST5 (ENSHGLG00000045242)	ENSHGLG00000001055	ENSHGLG00000045785	ENSHGLG00000038613	ENSHGLG00000048576
Naked mole-rat female	MODERN SPECIES	13	ENSHGLG00000009795	ENSHGLG00000018481	ENSHGLG00000039218	ENSHGLG00000042606	SULF1 (ENSHGLG00000015701)	SLCO5A1 (ENSHGLG00000007007)	ENSHGLG00000047939	PRDM14 (ENSHGLG00000016615)	NCOA2 (ENSHGLG00000016603)	ENSHGLG00000035853	ENSHGLG00000021028	ENSHGLG00000047012	TRAM1 (ENSHGLG00000008235)	ENSHGLG00000006207	XKR9 (ENSHGLG00000033679)	ENSHGLG00000018393 #22	EYA1 (ENSHGLG00000019347)	ENSHGLG00000038455	MSC (ENSHGLG00000040745)	TRPA1 (ENSHGLG00000017879)	KCNB2 (ENSHGLG00000017013)	ENSHGLG00000021368	Terf1 (ENSHGLG00000013062)	SBSPON (ENSHGLG00000044318)	RPL7 (ENSHGLG00000017000)	RDH10 (ENSHGLG00000013673)	STAU2 (ENSHGLG00000014888)	UBE2W (ENSHGLG00000016745)	TCEB1 (ENSHGLG00000042986)	TMEM70 (ENSHGLG00000042950)	LY96 (ENSHGLG00000017254)
Sciuridae	ANCESTRAL SPECIES	9	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.ib #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.e.a #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.b ##35	ENSGT01090000260018.B.b	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607	ENSGT00940000153104.e.b.b
Eurasian red squirrel	MODERN SPECIES	9	TECPR1 (ENSSVLG00005020896) #7	ENSSVLG00005020936	BRI3 (ENSSVLG00005020971) #8	BAIAP2L1 (ENSSVLG00005021009) #9	NPTX2 (ENSSVLG00005021028) #10	TMEM130 (ENSSVLG00005021101) #11	TRRAP (ENSSVLG00005021317) #12	SMURF1 (ENSSVLG00005021442) #13	KPNA7 (ENSSVLG00005021513) #14	ENSSVLG00005021650	ENSSVLG00005021905 #17	ARPC1B (ENSSVLG00005021982) #18	ENSSVLG00005022058 #19	BUD31 (ENSSVLG00005022102) #20	PTCD1 (ENSSVLG00005022169) #21	CPSF4 (ENSSVLG00005022210) #22	ENSSVLG00005022299 #23	ENSSVLG00005022403	ZNF789 (ENSSVLG00005022423)	ZNF394 (ENSSVLG00005022501) #24	ZKSCAN5 (ENSSVLG00005022583) #25	ZNF655 (ENSSVLG00005022626) #26	TMEM225B (ENSSVLG00005022717)	ZSCAN25 (ENSSVLG00005022756) #27	ENSSVLG00005022805 ##35	ENSSVLG00005023015 ##35	OR2AE1 (ENSSVLG00005023354)	GJC3 (ENSSVLG00005023365)	AZGP1 (ENSSVLG00005023385)	ZKSCAN1 (ENSSVLG00005023421)	ZSCAN21 (ENSSVLG00005023456)
Marmotini	ANCESTRAL SPECIES	85	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.ib #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.e.a #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.b.b.b.b.a.b.a ##35
Alpin marmot	MODERN SPECIES	77	ENSMMMG00000006285	BRI3 (ENSMMMG00000006279) #8	BAIAP2L1 (ENSMMMG00000006242) #9	NPTX2 (ENSMMMG00000006236) #10	TMEM130 (ENSMMMG00000006225) #11	TRRAP (ENSMMMG00000005650) #12	SMURF1 (ENSMMMG00000005602) #13	KPNA7 (ENSMMMG00000005564) #14	ENSMMMG00000005492	ARPC1A (ENSMMMG00000005477) #17	ARPC1B (ENSMMMG00000005459) #18	PDAP1 (ENSMMMG00000005448) #19	BUD31 (ENSMMMG00000005402) #20	PTCD1 (ENSMMMG00000005393) #21	ENSMMMG00000005390	CPSF4 (ENSMMMG00000005304) #22	ENSMMMG00000005266 #23	ZNF394 (ENSMMMG00000005254) #24	ZKSCAN5 (ENSMMMG00000005213) #25	ZNF655 (ENSMMMG00000005178) #26	TMEM225B (ENSMMMG00000005168)	ZSCAN25 (ENSMMMG00000005159) #27	ENSMMMG00000005149 ##35	ENSMMMG00000005108 ##35	ENSMMMG00000005062 ##35
Marmotini_b	ANCESTRAL SPECIES	131	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.ib #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.e.a #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.a.b.b.b.b.a.b.a ##35
Squirrel	MODERN SPECIES	350	LMTK2 (ENSSTOG00000009706)	BHLHA15 (ENSSTOG00000009728)	TECPR1 (ENSSTOG00000009733) #7	BRI3 (ENSSTOG00000021622) #8	BAIAP2L1 (ENSSTOG00000020782) #9	NPTX2 (ENSSTOG00000003631) #10	TMEM130 (ENSSTOG00000010723) #11	TRRAP (ENSSTOG00000028392) #12	SMURF1 (ENSSTOG00000015427) #13	KPNA7 (ENSSTOG00000032733) #14	ARPC1A (ENSSTOG00000001660) #17	ARPC1B (ENSSTOG00000001668) #18	PDAP1 (ENSSTOG00000001679) #19	BUD31 (ENSSTOG00000023828) #20	PTCD1 (ENSSTOG00000001682) #21	CPSF4 (ENSSTOG00000001688) #22	ATP5MF (ENSSTOG00000023928) #23	ENSSTOG00000034172	ZNF394 (ENSSTOG00000032054) #24	ZKSCAN5 (ENSSTOG00000019879) #25	ZNF655 (ENSSTOG00000008206) #26	ZSCAN25 (ENSSTOG00000008185) #27
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	300	TECPR1 (ENSUPAG00010006865) #7	BRI3 (ENSUPAG00010006894) #8	BAIAP2L1 (ENSUPAG00010006906) #9	NPTX2 (ENSUPAG00010006944) #10	TMEM130 (ENSUPAG00010006958) #11	TRRAP (ENSUPAG00010006983) #12	ENSUPAG00010007610	SMURF1 (ENSUPAG00010007614) #13	KPNA7 (ENSUPAG00010007717) #14	ENSUPAG00010007740	ARPC1A (ENSUPAG00010007778) #17	ARPC1B (ENSUPAG00010007793) #18	PDAP1 (ENSUPAG00010007814) #19	BUD31 (ENSUPAG00010007837) #20	PTCD1 (ENSUPAG00010007850) #21	CPSF4 (ENSUPAG00010007865) #22	ENSUPAG00010007991	ENSUPAG00010007996 #23	ENSUPAG00010008010 #24	ENSUPAG00010008013 #24	ZKSCAN5 (ENSUPAG00010008019) #25	ZNF655 (ENSUPAG00010008051) #26	TMEM225B (ENSUPAG00010008085)	ZSCAN25 (ENSUPAG00010008096) #27	ENSUPAG00010008106 ##35	ENSUPAG00010008122 ##35	ENSUPAG00010008173 ##35	ENSUPAG00010008186
Arctic ground squirrel	MODERN SPECIES	111	P2RY1 (ENSUPAG00010006704)	RAP2B (ENSUPAG00010006710)	ARHGEF26 (ENSUPAG00010006714)	DHX36 (ENSUPAG00010006741)	GPR149 (ENSUPAG00010006785)	MME (ENSUPAG00010006795)	ENSUPAG00010006817	PLCH1 (ENSUPAG00010006835)	ENSUPAG00010007178	C3orf33 (ENSUPAG00010007194)	SLC33A1 (ENSUPAG00010007214)	GMPS (ENSUPAG00010007230)	ENSUPAG00010007272	KCNAB1 (ENSUPAG00010007381)	SSR3 (ENSUPAG00010007397)	ENSUPAG00010007423 #22	TIPARP (ENSUPAG00010007433)	ENSUPAG00010007447	LEKR1 (ENSUPAG00010007452)	CCNL1 (ENSUPAG00010007457)	VEPH1 (ENSUPAG00010007462)	PTX3 (ENSUPAG00010007477)	SHOX2 (ENSUPAG00010007482)	RSRC1 (ENSUPAG00010007492)	MLF1 (ENSUPAG00010007820)	GFM1 (ENSUPAG00010007852)	LXN (ENSUPAG00010007947)	RARRES1 (ENSUPAG00010007963)	MFSD1 (ENSUPAG00010007976)	ENSUPAG00010007997
Lagomorpha	ANCESTRAL SPECIES	54	ENSGT00940000161875	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.a.b ##35	ENSGT00950000183069.a.a	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a.d	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a.c	ENSGT00940000161592	ENSGT00940000161607
Rabbit	MODERN SPECIES	493						NPTX2 (ENSOCUG00000017210) #10	TMEM130 (ENSOCUG00000014924) #11	TRRAP (ENSOCUG00000001829) #12	SMURF1 (ENSOCUG00000016326) #13	KPNA7 (ENSOCUG00000001792) #14	ARPC1A (ENSOCUG00000003944) #17	ARPC1B (ENSOCUG00000025962) #18	PDAP1 (ENSOCUG00000010572) #19	BUD31 (ENSOCUG00000010576) #20	PTCD1 (ENSOCUG00000010584) #21	CPSF4 (ENSOCUG00000002437) #22	ENSOCUG00000015693 #23	ENSOCUG00000038839	ZNF394 (ENSOCUG00000002444) #24	ZKSCAN5 (ENSOCUG00000002447) #25	ZNF655 (ENSOCUG00000007932) #26	ZSCAN25 (ENSOCUG00000007939) #27	ENSOCUG00000025181	ENSOCUG00000024710	CYP3A6 (ENSOCUG00000023380) ##35	ENSOCUG00000027046	ENSOCUG00000035935	ENSOCUG00000026110	ENSOCUG00000038804	ENSOCUG00000034133	TRIM4 (ENSOCUG00000039179)
Pika	MODERN SPECIES	1043												ARPC1B (ENSOPRG00000013600) #18	PDAP1 (ENSOPRG00000013615) #19	BUD31 (ENSOPRG00000013631) #20	PTCD1 (ENSOPRG00000013647) #21	CPSF4 (ENSOPRG00000013663) #22	ATP5MF (ENSOPRG00000013680) #23
Tree shrew	MODERN SPECIES	3419							TMEM130 (ENSTBEG00000001601) #11	TRRAP (ENSTBEG00000002243) #12	SMURF1 (ENSTBEG00000008251) #13	KPNA7 (ENSTBEG00000009007) #14	ENSTBEG00000009317	ARPC1B (ENSTBEG00000009902) #18	PDAP1 (ENSTBEG00000010152) #19	BUD31 (ENSTBEG00000010640) #20	PTCD1 (ENSTBEG00000011021) #21	CPSF4 (ENSTBEG00000011406) #22	ENSTBEG00000012332 #23
Primates	ANCESTRAL SPECIES	11	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592
Strepsirrhini	ANCESTRAL SPECIES	14	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.a.b ##35	ENSGT00950000182958.a.b.b.i.a.a ##35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a.d
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.s.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.a.a ##35	ENSGT00950000182958.a.b.b.i.a.b ##35	ENSGT00940000165702	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a
Mouse lemur	MODERN SPECIES	8	BHLHA15 (ENSMICG00000036615)	TECPR1 (ENSMICG00000002874) #7	ENSMICG00000043223 #8	BAIAP2L1 (ENSMICG00000002891) #9	NPTX2 (ENSMICG00000002901) #10	TMEM130 (ENSMICG00000002904) #11	TRRAP (ENSMICG00000002909) #12	SMURF1 (ENSMICG00000042244) #13	KPNA7 (ENSMICG00000017420) #14	ENSMICG00000017421	ENSMICG00000017423 #17	ARPC1B (ENSMICG00000017424) #18	PDAP1 (ENSMICG00000017425) #19	ENSMICG00000017426 #20	PTCD1 (ENSMICG00000017428) #21	CPSF4 (ENSMICG00000017429) #22	ENSMICG00000044867 #23	ENSMICG00000034093	ZNF789 (ENSMICG00000005979)	ZNF394 (ENSMICG00000005987) #24	ZKSCAN5 (ENSMICG00000005991) #25	ZNF655 (ENSMICG00000006010) #26	TMEM225B (ENSMICG00000029262)	ZSCAN25 (ENSMICG00000006018) #27	ENSMICG00000014650 ##35	ENSMICG00000006024 ##35	TRIM4 (ENSMICG00000005567)	AZGP1 (ENSMICG00000030520)	ENSMICG00000041812	ZKSCAN1 (ENSMICG00000003957)	ZSCAN21 (ENSMICG00000003959)
Lemuriformes_a	ANCESTRAL SPECIES	16	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.s.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.a.a ##35	ENSGT00940000165702	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a.d
Greater bamboo lemur	MODERN SPECIES	522	BHLHA15 (ENSPSMG00000003426)	TECPR1 (ENSPSMG00000003451) #7	BRI3 (ENSPSMG00000003477) #8	BAIAP2L1 (ENSPSMG00000003502) #9	NPTX2 (ENSPSMG00000003510) #10	ENSPSMG00000003514	TMEM130 (ENSPSMG00000003560) #11	TRRAP (ENSPSMG00000004004) #12	SMURF1 (ENSPSMG00000004395) #13	KPNA7 (ENSPSMG00000004499) #14	ARPC1A (ENSPSMG00000004536) #17	ARPC1B (ENSPSMG00000004575) #18	PDAP1 (ENSPSMG00000004603) #19	BUD31 (ENSPSMG00000004621) #20	PTCD1 (ENSPSMG00000004631) #21	CPSF4 (ENSPSMG00000004691) #22	ATP5MF (ENSPSMG00000004717) #23	ENSPSMG00000004726	ZNF789 (ENSPSMG00000004734)	ENSPSMG00000004745 #24	ZKSCAN5 (ENSPSMG00000004768) #25	ENSPSMG00000004779	FAM200A (ENSPSMG00000004785)	ZNF655 (ENSPSMG00000004861) #26	TMEM225B (ENSPSMG00000004872)	ZSCAN25 (ENSPSMG00000004884) #27	ENSPSMG00000004900 ##35
Coquerels sifaka	MODERN SPECIES	155	LMTK2 (ENSPCOG00000025104)	TECPR1 (ENSPCOG00000015825) #7	BRI3 (ENSPCOG00000000280) #8	BAIAP2L1 (ENSPCOG00000022611) #9	NPTX2 (ENSPCOG00000024897) #10	TMEM130 (ENSPCOG00000025459) #11	TRRAP (ENSPCOG00000021914) #12	SMURF1 (ENSPCOG00000023089) #13	KPNA7 (ENSPCOG00000026168) #14	ENSPCOG00000017933	ENSPCOG00000013572 #17	ARPC1B (ENSPCOG00000010552) #18	PDAP1 (ENSPCOG00000024638) #19	BUD31 (ENSPCOG00000016931) #20	PTCD1 (ENSPCOG00000018596) #21	CPSF4 (ENSPCOG00000012771) #22	ATP5MF (ENSPCOG00000027298) #23	ZNF789 (ENSPCOG00000020262)	ZNF394 (ENSPCOG00000025668) #24	ZKSCAN5 (ENSPCOG00000024797) #25	ZNF655 (ENSPCOG00000017676) #26	TMEM225B (ENSPCOG00000020944)	ZSCAN25 (ENSPCOG00000020153) #27	ENSPCOG00000002834 ##35	ENSPCOG00000023160	CYP3A201 (ENSPCOG00000018451) ##35	CYP3A5 (ENSPCOG00000018679) ##35	OR2AE1 (ENSPCOG00000021928)	TRIM4 (ENSPCOG00000003840)	AZGP1 (ENSPCOG00000028874)	ENSPCOG00000025347
Bushbaby	MODERN SPECIES	257	BHLHA15 (ENSOGAG00000010106)	TECPR1 (ENSOGAG00000010108) #7	ENSOGAG00000000638 #8	BAIAP2L1 (ENSOGAG00000000639) #9	NPTX2 (ENSOGAG00000000640) #10	TMEM130 (ENSOGAG00000000642) #11	TRRAP (ENSOGAG00000000643) #12	SMURF1 (ENSOGAG00000009903) #13	ENSOGAG00000031106 #14	ENSOGAG00000028575	ARPC1A (ENSOGAG00000010870) #17	ARPC1B (ENSOGAG00000010872) #18	ENSOGAG00000010874 #19	BUD31 (ENSOGAG00000010875) #20	PTCD1 (ENSOGAG00000010877) #21	CPSF4 (ENSOGAG00000010884) #22	ENSOGAG00000032002	ZNF394 (ENSOGAG00000025525) #24	ZKSCAN5 (ENSOGAG00000010899) #25	FAM200A (ENSOGAG00000026707)	ZNF655 (ENSOGAG00000009915) #26	TMEM225B (ENSOGAG00000032661)	ZSCAN25 (ENSOGAG00000011024) #27	CYP3A4 (ENSOGAG00000011021) ##35	CYP3A169 (ENSOGAG00000004122) ##35	ENSOGAG00000004125 ##35	ENSOGAG00000032785	CYP3A91 (ENSOGAG00000015249) ##35	OR2AE1 (ENSOGAG00000034244)	TRIM4 (ENSOGAG00000010646)	GJC3 (ENSOGAG00000016305)
Haplorrhini	ANCESTRAL SPECIES	26	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607
Tarsier	DUPLICATION
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	3660																ENSTSYG00000008195 #22
Tarsier	MODERN SPECIES	36																ENSTSYG00000014604 #22
Tarsier	MODERN SPECIES	4203										ENSTSYG00000009967	ARPC1A (ENSTSYG00000003574) #17	ARPC1B (ENSTSYG00000033630) #18	PDAP1 (ENSTSYG00000035864) #19	BUD31 (ENSTSYG00000026135) #20	PTCD1 (ENSTSYG00000029495) #21	CPSF4 (ENSTSYG00000005712) #22	ATP5MF (ENSTSYG00000026376) #23	ZNF394 (ENSTSYG00000013540) #24	ZNF789 (ENSTSYG00000031696)	ZKSCAN5 (ENSTSYG00000014107) #25	ZNF655 (ENSTSYG00000002676) #26	TMEM225B (ENSTSYG00000032314)	ZSCAN25 (ENSTSYG00000033603) #27	ENSTSYG00000009030
Simiiformes	ANCESTRAL SPECIES	26	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.n #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a
Platyrrhini	ANCESTRAL SPECIES	19	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a.c #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B.i.a #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b.z.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.`b #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.n #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b ##35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607	ENSGT00940000153104.e.b.b
Cebidae	ANCESTRAL SPECIES	24	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a.c #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B.i.a #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b.z.a #18	ENSGT00950000183183.b.b.z.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.`b #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.n #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b ##35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607	ENSGT00940000153104.e.b.b
Cebidae_a	ANCESTRAL SPECIES	19	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a.c #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B.i.a #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b.y #18	ENSGT00950000183183.b.b.z.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.`b #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.n.c #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b ##35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607	ENSGT00940000153104.e.b.b
Capuchin	MODERN SPECIES	82	LMTK2 (ENSCCAG00000021992)	TECPR1 (ENSCCAG00000022147) #7	BRI3 (ENSCCAG00000022002) #8	BAIAP2L1 (ENSCCAG00000022124) #9	NPTX2 (ENSCCAG00000021986) #10	TMEM130 (ENSCCAG00000021884) #11	TRRAP (ENSCCAG00000031555) #12	SMURF1 (ENSCCAG00000037956) #13	ENSCCAG00000037962 #14	ENSCCAG00000024944	ARPC1A (ENSCCAG00000019780) #17	ENSCCAG00000037322 #18	PDAP1 (ENSCCAG00000031892) #19	BUD31 (ENSCCAG00000021788) #20	PTCD1 (ENSCCAG00000034025) #21	CPSF4 (ENSCCAG00000028291) #22	ENSCCAG00000017059 #23	ENSCCAG00000020703	ZNF394 (ENSCCAG00000027351) #24	ZNF789 (ENSCCAG00000025456)	ZKSCAN5 (ENSCCAG00000030902) #25	ZNF655 (ENSCCAG00000022358) #26	TMEM225B (ENSCCAG00000018539)	ENSCCAG00000037804	ZSCAN25 (ENSCCAG00000037223) #27	CYP3A5 (ENSCCAG00000034158) ##35	CYP3A90 (ENSCCAG00000036748) ##35	CYP3A4 (ENSCCAG00000017463) ##35	TRIM4 (ENSCCAG00000029392)	GJC3 (ENSCCAG00000024102)	AZGP1 (ENSCCAG00000033551)
Bolivian squirrel monkey	MODERN SPECIES	104	ENSSBOG00000021103	LMTK2 (ENSSBOG00000035095)	TECPR1 (ENSSBOG00000018971) #7	ENSSBOG00000032858 #8	ENSSBOG00000018064 #9	NPTX2 (ENSSBOG00000029192) #10	TMEM130 (ENSSBOG00000023597) #11	TRRAP (ENSSBOG00000022151) #12	SMURF1 (ENSSBOG00000026488) #13	ENSSBOG00000032329 #14	ENSSBOG00000035988	ARPC1B (ENSSBOG00000017784) #18	ENSSBOG00000035146 #19	BUD31 (ENSSBOG00000027048) #20	PTCD1 (ENSSBOG00000024114) #21	CPSF4 (ENSSBOG00000020493) #22	ATP5MF (ENSSBOG00000032284) #23	ZNF394 (ENSSBOG00000026184) #24	ZNF789 (ENSSBOG00000027974)	ZKSCAN5 (ENSSBOG00000020293) #25	ZNF655 (ENSSBOG00000023361) #26	TMEM225B (ENSSBOG00000035101)	ZSCAN25 (ENSSBOG00000032849) #27	CYP3A90 (ENSSBOG00000022364) ##35	CYP3A5 (ENSSBOG00000030571) ##35	CYP3A4 (ENSSBOG00000035505) ##35	TRIM4 (ENSSBOG00000032029)	GJC3 (ENSSBOG00000022987)	AZGP1 (ENSSBOG00000026027)	ZKSCAN1 (ENSSBOG00000022013)	ZSCAN21 (ENSSBOG00000027308)
Marmoset	MODERN SPECIES	11	BHLHA15 (ENSCJAG00000023085)	TECPR1 (ENSCJAG00000033050) #7	BRI3 (ENSCJAG00000071589) #8	BAIAP2L1 (ENSCJAG00000031937) #9	NPTX2 (ENSCJAG00000015220) #10	ENSCJAG00000078860	TMEM130 (ENSCJAG00000016109) #11	TRRAP (ENSCJAG00000016008) #12	SMURF1 (ENSCJAG00000046325) #13	KPNA7 (ENSCJAG00000015943) #14	ENSCJAG00000015859 #17	ENSCJAG00000015849 #18	PDAP1 (ENSCJAG00000015838) #19	BUD31 (ENSCJAG00000015836) #20	PTCD1 (ENSCJAG00000015815) #21	CPSF4 (ENSCJAG00000015826) #22	ATP5MF (ENSCJAG00000045628) #23	ZNF789 (ENSCJAG00000015813)	ZKSCAN5 (ENSCJAG00000015788) #25	ZNF394 (ENSCJAG00000015808) #24	ZNF655 (ENSCJAG00000032195) #26	TMEM225B (ENSCJAG00000033315)	ZSCAN25 (ENSCJAG00000015783) #27	CYP3A90 (ENSCJAG00000064350) ##35	CYP3A5 (ENSCJAG00000064981) ##35	CYP3A4 (ENSCJAG00000015744) ##35	TRIM4 (ENSCJAG00000015702)	GJC3 (ENSCJAG00000015695)	AZGP1 (ENSCJAG00000082690)	ZKSCAN1 (ENSCJAG00000046899)	ENSCJAG00000076538
Mas night monkey	MODERN SPECIES	556	LMTK2 (ENSANAG00000030215)	TECPR1 (ENSANAG00000034833) #7	BRI3 (ENSANAG00000027654) #8	ENSANAG00000024350 #9	NPTX2 (ENSANAG00000037968) #10	TMEM130 (ENSANAG00000034905) #11	TRRAP (ENSANAG00000031335) #12	SMURF1 (ENSANAG00000031906) #13	ENSANAG00000024791 #14	ENSANAG00000019992	ARPC1A (ENSANAG00000038029) #17	ENSANAG00000023601 #18	PDAP1 (ENSANAG00000035351) #19	ENSANAG00000027119 #20	PTCD1 (ENSANAG00000035790) #21	CPSF4 (ENSANAG00000021360) #22	ATP5MF (ENSANAG00000021638) #23	ZNF394 (ENSANAG00000030792) #24	ZNF789 (ENSANAG00000028480)	ZKSCAN5 (ENSANAG00000032873) #25	ZNF655 (ENSANAG00000029025) #26	TMEM225B (ENSANAG00000035558)	ZSCAN25 (ENSANAG00000020427) #27	ENSANAG00000022722	CYP3A5 (ENSANAG00000032272) ##35	TRIM4 (ENSANAG00000036020)	GJC3 (ENSANAG00000030391)	ENSANAG00000027664
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.n #19	ENSGT00390000018509.a.m #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00390000002944.e.b	ENSGT00510000046986.n.a #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b	ENSGT00940000163330
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.n.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00390000002944.e.b	ENSGT00510000046986.n.a #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000156593.wc.a	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.b ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35
Hominidae	ANCESTRAL SPECIES	26	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486.g.a #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.n.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00390000002944.e.b	ENSGT00510000046986.n.a.a #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000156593.wc.a	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00510000047886.a #7	ENSGT00510000048486.g.a #8	ENSGT00940000153560.b.b.a #9	ENSGT00950000183087.A.a.b.a.g.b.a.b	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.n.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00390000002944.e.b	ENSGT00510000046986.n.a.a.a #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000156593.wc.a	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b
Gorilla	MODERN SPECIES	20	BAIAP2L1 (ENSGGOG00000022920) #9	ENSGGOG00000023648	NPTX2 (ENSGGOG00000014713) #10	TMEM130 (ENSGGOG00000016665) #11	TRRAP (ENSGGOG00000002928) #12	SMURF1 (ENSGGOG00000011481) #13	KPNA7 (ENSGGOG00000000414) #14	ENSGGOG00000016797	ENSGGOG00000036592 #17	ARPC1A (ENSGGOG00000039217) #17	ARPC1B (ENSGGOG00000013186) #18	PDAP1 (ENSGGOG00000025196) #19	BUD31 (ENSGGOG00000015119) #20	ENSGGOG00000041309	PTCD1 (ENSGGOG00000015123) #21	CPSF4 (ENSGGOG00000015131) #22	ATP5MF (ENSGGOG00000037236) #23	ENSGGOG00000022768	ZNF394 (ENSGGOG00000013650) #24	ZKSCAN5 (ENSGGOG00000009555) #25	FAM200A (ENSGGOG00000001350)	ZNF655 (ENSGGOG00000002488) #26	TMEM225B (ENSGGOG00000040673)	ZSCAN25 (ENSGGOG00000016950) #27	CYP3A5 (ENSGGOG00000003875) ##35	ENSGGOG00000043492 ##35	CYP3A4 (ENSGGOG00000003894) ##35	CYP3A43 (ENSGGOG00000002076) ##35	OR2AE1 (ENSGGOG00000027735)	TRIM4 (ENSGGOG00000044005)	GJC3 (ENSGGOG00000011401)
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00510000047886.a #7	ENSGT00510000048486.g.a #8	ENSGT00940000153560.b.b.a #9	ENSGT00950000183087.A.a.b.a.g.b.a.b	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.n.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00390000002944.e.b	ENSGT00510000046986.n.a.a.a #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000156593.wc.a	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b
Pan	ANCESTRAL SPECIES	13	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486.g.a #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.n.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00390000002944.e.b	ENSGT00510000046986.n.a.a.a #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000156593.wc.a	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b
Bonobo	MODERN SPECIES	20	BHLHA15 (ENSPPAG00000038305)	TECPR1 (ENSPPAG00000036532) #7	ENSPPAG00000031565 #8	BAIAP2L1 (ENSPPAG00000037144) #9	ENSPPAG00000032935 #10	TMEM130 (ENSPPAG00000016661) #11	TRRAP (ENSPPAG00000036292) #12	SMURF1 (ENSPPAG00000031727) #13	KPNA7 (ENSPPAG00000040756) #14	ENSPPAG00000032160	ARPC1A (ENSPPAG00000032222) #17	ARPC1B (ENSPPAG00000029449) #18	PDAP1 (ENSPPAG00000031378) #19	BUD31 (ENSPPAG00000040700) #20	PTCD1 (ENSPPAG00000036024) #21	CPSF4 (ENSPPAG00000043355) #22	ENSPPAG00000042587	ATP5MF (ENSPPAG00000036976) #23	ZNF789 (ENSPPAG00000040508)	ZNF394 (ENSPPAG00000036746) #24	ZKSCAN5 (ENSPPAG00000035814) #25	FAM200A (ENSPPAG00000025979)	ZNF655 (ENSPPAG00000041610) #26	TMEM225B (ENSPPAG00000040983)	ZSCAN25 (ENSPPAG00000043285) #27	ENSPPAG00000035255	CYP3A5 (ENSPPAG00000038928) ##35	CYP3A67 (ENSPPAG00000030737) ##35	CYP3A4 (ENSPPAG00000038840) ##35	CYP3A43 (ENSPPAG00000022863) ##35	OR2AE1 (ENSPPAG00000016879)
Chimpanzee	MODERN SPECIES	20	TECPR1 (ENSPTRG00000028478) #7	BRI3 (ENSPTRG00000019436) #8	BAIAP2L1 (ENSPTRG00000019438) #9	ENSPTRG00000049708	NPTX2 (ENSPTRG00000019440) #10	TMEM130 (ENSPTRG00000045055) #11	TRRAP (ENSPTRG00000019442) #12	SMURF1 (ENSPTRG00000019444) #13	KPNA7 (ENSPTRG00000019446) #14	MYH16 (ENSPTRG00000052047)	ARPC1A (ENSPTRG00000033819) #17	ARPC1B (ENSPTRG00000019449) #18	PDAP1 (ENSPTRG00000041711) #19	BUD31 (ENSPTRG00000019451) #20	PTCD1 (ENSPTRG00000019452) #21	CPSF4 (ENSPTRG00000019453) #22	ENSPTRG00000046696	ATP5MF (ENSPTRG00000044099) #23	ZNF789 (ENSPTRG00000023303)	ZNF394 (ENSPTRG00000019456) #24	ZKSCAN5 (ENSPTRG00000019455) #25	FAM200A (ENSPTRG00000042511)	ZNF655 (ENSPTRG00000048790) #26	TMEM225B (ENSPTRG00000043828)	ZSCAN25 (ENSPTRG00000023744) #27	ENSPTRG00000047408	CYP3A5 (ENSPTRG00000019458) ##35	CYP3A7 (ENSPTRG00000019459) ##35	CYP3A4 (ENSPTRG00000033773) ##35	CYP3A43 (ENSPTRG00000048873) ##35	OR2AE1 (ENSPTRG00000019462)
Human	MODERN SPECIES	19	TECPR1 (ENSG00000205356) #7	BRI3 (ENSG00000164713) #8	BAIAP2L1 (ENSG00000006453) #9	NPTX2 (ENSG00000106236) #10	TMEM130 (ENSG00000166448) #11	TRRAP (ENSG00000196367) #12	SMURF1 (ENSG00000198742) #13	KPNA7 (ENSG00000185467) #14	ENSG00000284292	ARPC1A (ENSG00000241685) #17	ARPC1B (ENSG00000130429) #18	PDAP1 (ENSG00000106244) #19	BUD31 (ENSG00000106245) #20	PTCD1 (ENSG00000106246) #21	ATP5MF-PTCD1 (ENSG00000248919)	CPSF4 (ENSG00000160917) #22	ATP5MF (ENSG00000241468) #23	ZNF789 (ENSG00000198556)	ZNF394 (ENSG00000160908) #24	ZKSCAN5 (ENSG00000196652) #25	FAM200A (ENSG00000221909)	ZNF655 (ENSG00000197343) #26	TMEM225B (ENSG00000244219)	ZSCAN25 (ENSG00000197037) #27	CYP3A5 (ENSG00000106258) ##35	CYP3A7-CYP3A51P (ENSG00000282301)	CYP3A7 (ENSG00000160870) ##35	CYP3A4 (ENSG00000160868) ##35	CYP3A43 (ENSG00000021461) ##35	OR2AE1 (ENSG00000244623)	TRIM4 (ENSG00000146833)
Orangutan	MODERN SPECIES	20	LMTK2 (ENSPPYG00000017360)	BHLHA15 (ENSPPYG00000017361)	TECPR1 (ENSPPYG00000017362) #7	ENSPPYG00000037940 #8	BAIAP2L1 (ENSPPYG00000017363) #9	NPTX2 (ENSPPYG00000029795) #10	TMEM130 (ENSPPYG00000017365) #11	TRRAP (ENSPPYG00000017366) #12	SMURF1 (ENSPPYG00000017368) #13	KPNA7 (ENSPPYG00000017369) #14	ARPC1A (ENSPPYG00000025816) #17	ARPC1B (ENSPPYG00000017374) #18	ENSPPYG00000017375 #19	BUD31 (ENSPPYG00000017376) #20	PTCD1 (ENSPPYG00000017377) #21	CPSF4 (ENSPPYG00000017378) #22	ENSPPYG00000041797	ATP5MF (ENSPPYG00000017379) #23	ZNF789 (ENSPPYG00000041347)	ZNF394 (ENSPPYG00000017381) #24	ZKSCAN5 (ENSPPYG00000017382) #25	FAM200A (ENSPPYG00000017383)	ZNF655 (ENSPPYG00000017384) #26	TMEM225B (ENSPPYG00000033654)	ZSCAN25 (ENSPPYG00000034484) #27	CYP3A5 (ENSPPYG00000034419) ##35	CYP3A7 (ENSPPYG00000032198) ##35	ENSPPYG00000031069 ##35	CYP3A4 (ENSPPYG00000017390) ##35	CYP3A43 (ENSPPYG00000036752) ##35	TRIM4 (ENSPPYG00000017391)
Gibbon	MODERN SPECIES	7	ENSNLEG00000012944	ENSNLEG00000035321 #8	BAIAP2L1 (ENSNLEG00000033877) #9	ENSNLEG00000010697 #10	TMEM130 (ENSNLEG00000010699) #11	TRRAP (ENSNLEG00000027081) #12	SMURF1 (ENSNLEG00000010717) #13	KPNA7 (ENSNLEG00000010827) #14	ENSNLEG00000032444	ARPC1A (ENSNLEG00000010852) #17	ENSNLEG00000026790 #18	PDAP1 (ENSNLEG00000011017) #19	BUD31 (ENSNLEG00000011020) #20	PTCD1 (ENSNLEG00000011060) #21	ENSNLEG00000011100	CPSF4 (ENSNLEG00000011074) #22	ATP5MF (ENSNLEG00000011101) #23	ZNF789 (ENSNLEG00000011123)	ZNF394 (ENSNLEG00000035314) #24	ZKSCAN5 (ENSNLEG00000011141) #25	FAM200A (ENSNLEG00000011174)	ZNF655 (ENSNLEG00000030892) #26	TMEM225B (ENSNLEG00000011185)	ZSCAN25 (ENSNLEG00000029330) #27	ENSNLEG00000032867	CYP3A5 (ENSNLEG00000035706) ##35	CYP3A67 (ENSNLEG00000035532) ##35	CYP3A7 (ENSNLEG00000026826) ##35	CYP3A4 (ENSNLEG00000011206) ##35	ENSNLEG00000011307 ##35	TRIM4 (ENSNLEG00000011309)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.m #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.n.a.d #23	ENSGT00390000002944.e.b	ENSGT00510000046986.n.a.c #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.c ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35
Rhinopithecus	ANCESTRAL SPECIES	46	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b.`b #18	ENSGT00390000018509.a.m #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.n.a.d.d #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.c ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a
Black snub-nosed monkey	MODERN SPECIES	814	MYO5C (ENSRBIG00000036923)	ENSRBIG00000044666	GNB5 (ENSRBIG00000041062)	BCL2L10 (ENSRBIG00000039361)	ENSRBIG00000021165	ENSRBIG00000041787	LEO1 (ENSRBIG00000036945)	ENSRBIG00000043764	TMOD3 (ENSRBIG00000043218)	TMOD2 (ENSRBIG00000035530)	LYSMD2 (ENSRBIG00000033395)	SCG3 (ENSRBIG00000039621)	ENSRBIG00000030362 #19	BUD31 (ENSRBIG00000044457) #20	PTCD1 (ENSRBIG00000043393) #21	CPSF4 (ENSRBIG00000033886) #22	ENSRBIG00000040611 #23	ZNF394 (ENSRBIG00000036523) #24	ZNF789 (ENSRBIG00000030268)	ZKSCAN5 (ENSRBIG00000013383) #25	FAM200A (ENSRBIG00000027570)	ZNF655 (ENSRBIG00000040289) #26	TMEM225B (ENSRBIG00000027495)	ENSRBIG00000040721	ZSCAN25 (ENSRBIG00000025241) #27	CYP3A7 (ENSRBIG00000042537) ##35	CYP3A5 (ENSRBIG00000037822) ##35	CYP3A43 (ENSRBIG00000029718) ##35	TRIM4 (ENSRBIG00000044371)	GJC3 (ENSRBIG00000038094)	AZGP1 (ENSRBIG00000033971)
Golden snub-nosed monkey	MODERN SPECIES	1891						TMEM130 (ENSRROG00000041705) #11	TRRAP (ENSRROG00000038566) #12	SMURF1 (ENSRROG00000033605) #13	KPNA7 (ENSRROG00000038253) #14	ENSRROG00000029302	ARPC1A (ENSRROG00000034397) #17	ENSRROG00000039173 #18	ENSRROG00000040014 #19	BUD31 (ENSRROG00000036579) #20	PTCD1 (ENSRROG00000036420) #21	CPSF4 (ENSRROG00000040431) #22	ENSRROG00000035599 #23	ZNF789 (ENSRROG00000024718)	ZNF394 (ENSRROG00000034088) #24	ZKSCAN5 (ENSRROG00000034392) #25	FAM200A (ENSRROG00000018629)	ZNF655 (ENSRROG00000044389) #26	TMEM225B (ENSRROG00000025234)	ZSCAN25 (ENSRROG00000043347) #27	CYP3A5 (ENSRROG00000032359) ##35	ENSRROG00000042643 ##35
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.m #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.n.a.c.b #23	ENSGT00390000002944.e.b	ENSGT00510000046986.n.a.c.a #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b
Vervet Monkey	MODERN SPECIES	20	PMS2 (ENSCSAG00000017741)	LMTK2 (ENSCSAG00000017746)	BHLHA15 (ENSCSAG00000019492)	TECPR1 (ENSCSAG00000017751) #7	BRI3 (ENSCSAG00000017754) #8	BAIAP2L1 (ENSCSAG00000017756) #9	NPTX2 (ENSCSAG00000017758) #10	TMEM130 (ENSCSAG00000017759) #11	TRRAP (ENSCSAG00000017767) #12	SMURF1 (ENSCSAG00000017771) #13	KPNA7 (ENSCSAG00000017780) #14	ARPC1A (ENSCSAG00000017788) #17	ENSCSAG00000017792 #19	BUD31 (ENSCSAG00000017793) #20	PTCD1 (ENSCSAG00000017794) #21	CPSF4 (ENSCSAG00000017795) #22	ZNF789 (ENSCSAG00000017796)	ZNF394 (ENSCSAG00000017799) #24	ZKSCAN5 (ENSCSAG00000017802) #25	FAM200A (ENSCSAG00000019491)	ZNF655 (ENSCSAG00000017804) #26	TMEM225B (ENSCSAG00000017806)	ZSCAN25 (ENSCSAG00000017807) #27	CYP3A5 (ENSCSAG00000017809) ##35	CYP3A7 (ENSCSAG00000017821) ##35	ENSCSAG00000017824 ##35	ENSCSAG00000017825 ##35	CYP3A43 (ENSCSAG00000017826) ##35	OR2AE1 (ENSCSAG00000019490)	TRIM4 (ENSCSAG00000017827)	GJC3 (ENSCSAG00000019489)
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.m #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.n.a.c.b #23	ENSGT00390000002944.e.b	ENSGT00510000046986.n.a.c.a #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b
Cercopithecinae_b	ANCESTRAL SPECIES	36	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.m #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00390000002944.e.b	ENSGT00510000046986.n.a.c.a #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b	ENSGT00940000163330
Olive baboon	MODERN SPECIES	14	LMTK2 (ENSPANG00000023289)	BHLHA15 (ENSPANG00000010823)	TECPR1 (ENSPANG00000020539) #7	BRI3 (ENSPANG00000015667) #8	BAIAP2L1 (ENSPANG00000024563) #9	NPTX2 (ENSPANG00000009445) #10	TMEM130 (ENSPANG00000009013) #11	TRRAP (ENSPANG00000006931) #12	SMURF1 (ENSPANG00000023126) #13	KPNA7 (ENSPANG00000021499) #14	ARPC1A (ENSPANG00000032757) #17	ARPC1B (ENSPANG00000023245) #18	ENSPANG00000025132 #19	BUD31 (ENSPANG00000006779) #20	PTCD1 (ENSPANG00000016730) #21	CPSF4 (ENSPANG00000023123) #22	ENSPANG00000030778 #23	ENSPANG00000009919 #24	ZNF789 (ENSPANG00000009920)	ZKSCAN5 (ENSPANG00000000548) #25	FAM200A (ENSPANG00000018803)	ENSPANG00000018842	TMEM225B (ENSPANG00000008632)	ZSCAN25 (ENSPANG00000023896) #27	CYP3A5 (ENSPANG00000023122) ##35	CYP3A7 (ENSPANG00000008155) ##35	CYP3A4 (ENSPANG00000017641) ##35	CYP3A43 (ENSPANG00000022197) ##35	OR2AE1 (ENSPANG00000047108)	TRIM4 (ENSPANG00000006101)	GJC3 (ENSPANG00000026070)
Cercopithecinae_d	ANCESTRAL SPECIES	75	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.m #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00390000002944.e.b	ENSGT00510000046986.n.a.c.a #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a
Drill	MODERN SPECIES	930	TECPR1 (ENSMLEG00000033546) #7	BRI3 (ENSMLEG00000038264) #8	BAIAP2L1 (ENSMLEG00000030011) #9	NPTX2 (ENSMLEG00000034636) #10	TMEM130 (ENSMLEG00000024016) #11	TRRAP (ENSMLEG00000020926) #12	SMURF1 (ENSMLEG00000041278) #13	KPNA7 (ENSMLEG00000041680) #14	ENSMLEG00000036464	ARPC1A (ENSMLEG00000031614) #17	ENSMLEG00000041405 #18	ENSMLEG00000031168 #18	ENSMLEG00000029041 #19	BUD31 (ENSMLEG00000035118) #20	PTCD1 (ENSMLEG00000031179) #21	CPSF4 (ENSMLEG00000034721) #22	ATP5MF (ENSMLEG00000043000) #23	ZNF394 (ENSMLEG00000040037) #24	ZNF789 (ENSMLEG00000041142)	ZKSCAN5 (ENSMLEG00000034683) #25	FAM200A (ENSMLEG00000001071)	ZNF655 (ENSMLEG00000041871) #26	TMEM225B (ENSMLEG00000037236)	ZSCAN25 (ENSMLEG00000006141) #27	CYP3A5 (ENSMLEG00000042908) ##35	CYP3A67 (ENSMLEG00000035821) ##35	CYP3A7 (ENSMLEG00000042648) ##35	ENSMLEG00000042657 ##35	CYP3A4 (ENSMLEG00000032310) ##35	CYP3A43 (ENSMLEG00000038120) ##35	TRIM4 (ENSMLEG00000043935)
Sooty mangabey	MODERN SPECIES	630	BHLHA15 (ENSCATG00000021737)	TECPR1 (ENSCATG00000043836) #7	BRI3 (ENSCATG00000039656) #8	BAIAP2L1 (ENSCATG00000033297) #9	NPTX2 (ENSCATG00000035885) #10	TMEM130 (ENSCATG00000034901) #11	TRRAP (ENSCATG00000032049) #12	SMURF1 (ENSCATG00000019164) #13	KPNA7 (ENSCATG00000016098) #14	ENSCATG00000045237	ARPC1A (ENSCATG00000034511) #17	ARPC1B (ENSCATG00000037261) #18	ENSCATG00000037918 #19	BUD31 (ENSCATG00000042456) #20	PTCD1 (ENSCATG00000040859) #21	CPSF4 (ENSCATG00000038440) #22	ENSCATG00000030778	ENSCATG00000040640 #23	ZNF789 (ENSCATG00000042095)	ZNF394 (ENSCATG00000042636) #24	ZKSCAN5 (ENSCATG00000043807) #25	FAM200A (ENSCATG00000007135)	ZNF655 (ENSCATG00000041092) #26	TMEM225B (ENSCATG00000038153)	ZSCAN25 (ENSCATG00000010757) #27	CYP3A7 (ENSCATG00000036704) ##35	CYP3A43 (ENSCATG00000033186) ##35	TRIM4 (ENSCATG00000043750)	GJC3 (ENSCATG00000039961)	AZGP1 (ENSCATG00000041489)	ZKSCAN1 (ENSCATG00000039552)
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.m #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.n.a.c.a.b #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.c.b ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b	ENSGT00940000163330
Pig-tailed macaque	MODERN SPECIES	80	BHLHA15 (ENSMNEG00000021350)	TECPR1 (ENSMNEG00000039715) #7	BRI3 (ENSMNEG00000000029) #8	BAIAP2L1 (ENSMNEG00000027564) #9	NPTX2 (ENSMNEG00000031035) #10	TMEM130 (ENSMNEG00000034143) #11	TRRAP (ENSMNEG00000011245) #12	SMURF1 (ENSMNEG00000030527) #13	KPNA7 (ENSMNEG00000043325) #14	ENSMNEG00000043344	ARPC1A (ENSMNEG00000045309) #17	ARPC1B (ENSMNEG00000032941) #18	ENSMNEG00000038469 #19	BUD31 (ENSMNEG00000034239) #20	PTCD1 (ENSMNEG00000043786) #21	CPSF4 (ENSMNEG00000032306) #22	ENSMNEG00000044753 #23	ZNF394 (ENSMNEG00000044404) #24	ZNF789 (ENSMNEG00000034945)	ZKSCAN5 (ENSMNEG00000036993) #25	FAM200A (ENSMNEG00000009524)	ZNF655 (ENSMNEG00000032786) #26	TMEM225B (ENSMNEG00000039756)	ZSCAN25 (ENSMNEG00000026859) #27	CYP3A5 (ENSMNEG00000029025) ##35	ENSMNEG00000019082 ##35	CYP3A4 (ENSMNEG00000031776) ##35	CYP3A43 (ENSMNEG00000025630) ##35	TRIM4 (ENSMNEG00000032676)	GJC3 (ENSMNEG00000035274)	AZGP1 (ENSMNEG00000040357)
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000167990.a	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT01100000263539.b.a.a.a.a.b.a.b.b.a.d.a	ENSGT00950000183188.A.b #11	ENSGT01080000257579.b.b.b.a.b	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT01100000263539.b.a.a.a.a.a.a.a.b.b.b.a.b.b	ENSGT00950000183183.b.a.y.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.m #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.n.a.c.b #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441.a #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.i.b.a ##35	ENSGT00950000182958.a.b.b.i.b.b.c.b.d ##35	ENSGT00950000182958.a.b.b.i.b.b.c.a ##35	ENSGT00950000182958.a.b.b.i.a ##35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000047721	TMEM130 (ENSMFAG00000040311) #11	ENSMFAG00000063130	TRRAP (ENSMFAG00000039475) #12	SMURF1 (ENSMFAG00000033436) #13	KPNA7 (ENSMFAG00000031709) #14	ENSMFAG00000062641	ENSMFAG00000052918	ARPC1A (ENSMFAG00000003138) #17	ARPC1B (ENSMFAG00000046299) #18	ENSMFAG00000053643	ENSMFAG00000003092 #19	BUD31 (ENSMFAG00000035579) #20	PTCD1 (ENSMFAG00000041324) #21	ENSMFAG00000051467	CPSF4 (ENSMFAG00000001462) #22	ENSMFAG00000036062 #23	ZNF789 (ENSMFAG00000041302)	ZNF394 (ENSMFAG00000045342) #24	ZKSCAN5 (ENSMFAG00000037519) #25	FAM200A (ENSMFAG00000030317)	ZNF655 (ENSMFAG00000037712) #26	TMEM225B (ENSMFAG00000045372)	ZSCAN25 (ENSMFAG00000046015) #27	ENSMFAG00000054128	ENSMFAG00000048200	CYP3A5 (ENSMFAG00000062917) ##35	CYP3A7 (ENSMFAG00000053006) ##35	CYP3A4 (ENSMFAG00000047569) ##35	CYP3A43 (ENSMFAG00000039406) ##35	OR2AE1 (ENSMFAG00000036704)
Rhesus	MODERN SPECIES	13	BRI3 (ENSMMUG00000049558)	BAIAP2L1 (ENSMMUG00000013276) #9	NPTX2 (ENSMMUG00000011970) #10	ENSMMUG00000059873	TMEM130 (ENSMMUG00000012377) #11	ENSMMUG00000055827	TRRAP (ENSMMUG00000023318) #12	SMURF1 (ENSMMUG00000009183) #13	ENSMMUG00000054851	KPNA7 (ENSMMUG00000019445) #14	ENSMMUG00000056270	ARPC1A (ENSMMUG00000001458) #17	PDAP1 (ENSMMUG00000001460) #19	BUD31 (ENSMMUG00000000427) #20	PTCD1 (ENSMMUG00000030408) #21	CPSF4 (ENSMMUG00000019191) #22	ZNF789 (ENSMMUG00000020139)	ZNF394 (ENSMMUG00000020140) #24	ZKSCAN5 (ENSMMUG00000020141) #25	FAM200A (ENSMMUG00000019104)	ZNF655 (ENSMMUG00000040393) #26	TMEM225B (ENSMMUG00000055483)	ZSCAN25 (ENSMMUG00000022728) #27	CYP3A7 (ENSMMUG00000022730) ##35	ENSMMUG00000060678	ENSMMUG00000050824	CYP3A43 (ENSMMUG00000022490) ##35	OR2AE1 (ENSMMUG00000063929)	TRIM4 (ENSMMUG00000022502)	GJC3 (ENSMMUG00000022503)	AZGP1 (ENSMMUG00000022504)
Laurasiatheria	ANCESTRAL SPECIES	10	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j #35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a
Eulipotyphla	ANCESTRAL SPECIES	296														ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23
Hedgehog	MODERN SPECIES	964														BUD31 (ENSEEUG00000002070) #20	PTCD1 (ENSEEUG00000002116) #21	CPSF4 (ENSEEUG00000002158) #22	ENSEEUG00000002166 #23
Common shrew	MODERN SPECIES	566																CPSF4 (ENSSARG00000012416) #22	FAM200A (ENSSARG00000012417)
Laurasiatheria_a	ANCESTRAL SPECIES	12	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j #35	ENSGT01090000260018.B.b	ENSGT00940000163330
Laurasiatheria_b	ANCESTRAL SPECIES	12	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00940000154740.a.a.c.b	ENSGT00940000165768	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j #35	ENSGT01090000260018.B.b
Carnivora	ANCESTRAL SPECIES	12	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.v.b.a #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.i.a #35	ENSGT00950000182958.a.b.b.j.i.b #35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a
Felidae	ANCESTRAL SPECIES	19	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.v.b.a #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.i.a.g #35	ENSGT00950000182958.a.b.b.j.i.a.h #35	ENSGT00950000182958.a.b.b.j.j #35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a
Panthera	ANCESTRAL SPECIES	27	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.v.b.a.c #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.i.a.g #35	ENSGT00950000182958.a.b.b.j.i.a.h #35	ENSGT00950000182958.a.b.b.j.j #35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a
Panthera_a	ANCESTRAL SPECIES	27	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.v.b.a.c #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000183014.f.a.h.p	ENSGT00930000152728.c	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.i.a.g #35	ENSGT00950000182958.a.b.b.j.i.a.h #35	ENSGT00950000182958.a.b.b.j.j #35	ENSGT01090000260018.B.b
lion	MODERN SPECIES	16	TECPR1 (ENSPLOG00000012232) #7	BRI3 (ENSPLOG00000012123) #8	BAIAP2L1 (ENSPLOG00000011965) #9	ENSPLOG00000011906	NPTX2 (ENSPLOG00000011785) #10	TMEM130 (ENSPLOG00000011537) #11	TRRAP (ENSPLOG00000022523) #12	SMURF1 (ENSPLOG00000022456) #13	KPNA7 (ENSPLOG00000022405) #14	ENSPLOG00000022335	ARPC1A (ENSPLOG00000022304) #17	ARPC1B (ENSPLOG00000022242) #18	PDAP1 (ENSPLOG00000022211) #19	BUD31 (ENSPLOG00000022188) #20	PTCD1 (ENSPLOG00000022137) #21	CPSF4 (ENSPLOG00000022084) #22	ENSPLOG00000022043 #23	ZNF789 (ENSPLOG00000022019)	ZNF394 (ENSPLOG00000022000) #24	ZKSCAN5 (ENSPLOG00000021985) #25	FAM200A (ENSPLOG00000021967)	ZNF655 (ENSPLOG00000021930) #26	ENSPLOG00000021878	ZSCAN25 (ENSPLOG00000021838) #27	ENSPLOG00000021805	ENSPLOG00000021785	CYP3A131 (ENSPLOG00000021657) #35	ENSPLOG00000021498 #35	ENSPLOG00000021444 #35	OR2AE1 (ENSPLOG00000021431)	TRIM4 (ENSPLOG00000021398)
leopard	MODERN SPECIES	91	BRI3 (ENSPPRG00000022966) #8	BAIAP2L1 (ENSPPRG00000023080) #9	ENSPPRG00000023746	NPTX2 (ENSPPRG00000024054) #10	TMEM130 (ENSPPRG00000024166) #11	TRRAP (ENSPPRG00000024644) #12	ENSPPRG00000003908	SMURF1 (ENSPPRG00000013759) #13	KPNA7 (ENSPPRG00000011372) #14	ENSPPRG00000010473	ARPC1A (ENSPPRG00000008068) #17	ARPC1B (ENSPPRG00000007519) #18	PDAP1 (ENSPPRG00000007263) #19	BUD31 (ENSPPRG00000004354) #20	PTCD1 (ENSPPRG00000003478) #21	CPSF4 (ENSPPRG00000003134) #22	ENSPPRG00000001557 #23	ZNF789 (ENSPPRG00000001332)	ZNF394 (ENSPPRG00000000948) #24	ZKSCAN5 (ENSPPRG00000000685) #25	FAM200A (ENSPPRG00000020418)	ZNF655 (ENSPPRG00000023556) #26	TMEM225B (ENSPPRG00000021822)	ZSCAN25 (ENSPPRG00000020661) #27	ENSPPRG00000018011	ENSPPRG00000020127	ENSPPRG00000020116	CYP3A131 (ENSPPRG00000014793) #35	CYP3A132 (ENSPPRG00000013886) #35	ENSPPRG00000010396 #35	OR2AE1 (ENSPPRG00000019851)
Tiger	MODERN SPECIES	155	ENSPTIG00000009441	LMTK2 (ENSPTIG00000008096)	TECPR1 (ENSPTIG00000005029) #7	BAIAP2L1 (ENSPTIG00000020036) #9	NPTX2 (ENSPTIG00000019675) #10	TMEM130 (ENSPTIG00000017143) #11	ENSPTIG00000016839	SMURF1 (ENSPTIG00000019948) #13	KPNA7 (ENSPTIG00000019265) #14	ENSPTIG00000015791	ARPC1A (ENSPTIG00000015204) #17	ARPC1B (ENSPTIG00000014065) #18	PDAP1 (ENSPTIG00000012964) #19	BUD31 (ENSPTIG00000011324) #20	PTCD1 (ENSPTIG00000010617) #21	CPSF4 (ENSPTIG00000005604) #22	ENSPTIG00000004326 #23	ZNF789 (ENSPTIG00000001790)	ZNF394 (ENSPTIG00000020093) #24	ZKSCAN5 (ENSPTIG00000018483) #25	FAM200A (ENSPTIG00000006096)	ZNF655 (ENSPTIG00000015445) #26	TMEM225B (ENSPTIG00000013612)	ZSCAN25 (ENSPTIG00000012424) #27	ENSPTIG00000005985	ENSPTIG00000011815	CYP3A131 (ENSPTIG00000011625) #35	CYP3A132 (ENSPTIG00000009616) #35	ENSPTIG00000008461 #35
Cat	MODERN SPECIES	247	OCM (ENSFCAG00000000313)	LMTK2 (ENSFCAG00000030546)	TECPR1 (ENSFCAG00000000316) #7	BRI3 (ENSFCAG00000045373) #8	BAIAP2L1 (ENSFCAG00000000317) #9	NPTX2 (ENSFCAG00000004394) #10	TMEM130 (ENSFCAG00000036518) #11	TRRAP (ENSFCAG00000015061) #12	SMURF1 (ENSFCAG00000015062) #13	KPNA7 (ENSFCAG00000015063) #14	MYH16 (ENSFCAG00000015064)	ARPC1A (ENSFCAG00000015065) #17	PDAP1 (ENSFCAG00000015067) #19	BUD31 (ENSFCAG00000027449) #20	PTCD1 (ENSFCAG00000015069) #21	CPSF4 (ENSFCAG00000015070) #22	ENSFCAG00000037096 #23	ZNF789 (ENSFCAG00000015072)	ZNF394 (ENSFCAG00000031324) #24	ZKSCAN5 (ENSFCAG00000026733) #25	ZNF655 (ENSFCAG00000024492) #26	TMEM225B (ENSFCAG00000024064)	ZSCAN25 (ENSFCAG00000006593) #27	ENSFCAG00000025929	CYP3A131 (ENSFCAG00000046713) #35	CYP3A132 (ENSFCAG00000040455) #35	ENSFCAG00000023135 #35	TRIM4 (ENSFCAG00000025749)	GJC3 (ENSFCAG00000015012)	ZKSCAN1 (ENSFCAG00000042679)	ZSCAN21 (ENSFCAG00000029089)
Caniformia	ANCESTRAL SPECIES	8	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT00390000006548.b.k.j.b	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.v.b.a #23	ENSGT00510000046986.w #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.i.a #35	ENSGT00950000182958.a.b.b.j.i.b.a #35	ENSGT00950000182958.a.b.b.j.i.b.b #35	ENSGT01090000260018.B.b
Canidae	ANCESTRAL SPECIES	3	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B.p.a #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.w #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.w #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.i.a.e #35	ENSGT00950000182958.a.b.b.j.i.a.f.a #35	ENSGT00950000182958.a.b.b.j.i.b.a.c #35	ENSGT00950000182958.a.b.b.j.i.b.a.d #35	ENSGT01090000260018.B.b
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000153096.b.c.b.b.h	ENSGT00940000161804.c.a.a	ENSGT00940000158690 #13	ENSGT01050000244891.B.p.a #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.w #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.w #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.i.a.e #35	ENSGT00950000182958.a.b.b.j.i.a.f.a.b #35	ENSGT00950000182958.a.b.b.j.i.b.a.c #35	ENSGT00950000182958.a.b.b.j.i.b.a.d #35	ENSGT01090000260018.B.b.o
Dog	MODERN SPECIES	34	BAIAP2L1 (ENSCAFG00845009005) #9	NPTX2 (ENSCAFG00845004136) #10	TMEM130 (ENSCAFG00845004094) #11	TRRAP (ENSCAFG00845003973) #12	ENSCAFG00845003892	ENSCAFG00845003878	SMURF1 (ENSCAFG00845003851) #13	ENSCAFG00845003829 #14	MYH16 (ENSCAFG00845003682)	ARPC1A (ENSCAFG00845003616) #17	PDAP1 (ENSCAFG00845003605) #19	BUD31 (ENSCAFG00845003589) #20	PTCD1 (ENSCAFG00845003559) #21	ARPC1B (ENSCAFG00845003541) #18	ATP5J2 (ENSCAFG00845003518) #23	CPSF4 (ENSCAFG00845003492) #22	ENSCAFG00845003476	ZNF789 (ENSCAFG00845003457)	ZNF394 (ENSCAFG00845003436) #24	ZKSCAN5 (ENSCAFG00845003412) #25	FAM200A (ENSCAFG00845003383)	ZNF655 (ENSCAFG00845003343) #26	TMEM225B (ENSCAFG00845003304)	ENSCAFG00845003272 #27	OR1F15 (ENSCAFG00845003253)	CYP3A26 (ENSCAFG00845003103) #35	OR2AE1 (ENSCAFG00845002965)	TRIM4 (ENSCAFG00845002953)	ENSCAFG00845002934	AZGP1 (ENSCAFG00845002917)	ZKSCAN1 (ENSCAFG00845002866)
Dingo	MODERN SPECIES	351	BRI3 (ENSCAFG00020016791) #8	BAIAP2L1 (ENSCAFG00020016786) #9	NPTX2 (ENSCAFG00020016774) #10	TMEM130 (ENSCAFG00020016766) #11	TRRAP (ENSCAFG00020015718) #12	ENSCAFG00020015608	ENSCAFG00020015606	SMURF1 (ENSCAFG00020014606) #13	KPNA7 (ENSCAFG00020014578) #14	ENSCAFG00020014574	ARPC1A (ENSCAFG00020014569) #17	ARPC1B (ENSCAFG00020014497) #18	PDAP1 (ENSCAFG00020014491) #19	BUD31 (ENSCAFG00020014486) #20	PTCD1 (ENSCAFG00020014480) #21	CPSF4 (ENSCAFG00020014462) #22	ENSCAFG00020014459 #23	ENSCAFG00020014458	ZNF789 (ENSCAFG00020014455)	ZNF394 (ENSCAFG00020014454) #24	ZKSCAN5 (ENSCAFG00020014453) #25	FAM200A (ENSCAFG00020014452)	ENSCAFG00020014451	TMEM225B (ENSCAFG00020014448)	ZSCAN25 (ENSCAFG00020014447) #27	ENSCAFG00020014443	ENSCAFG00020014437 #35	ENSCAFG00020014417 #35	ENSCAFG00020014350 #35	ENSCAFG00020014292 #35	OR2AE1 (ENSCAFG00020014287)
Red fox	MODERN SPECIES	218	BRI3 (ENSVVUG00000015104) #8	BAIAP2L1 (ENSVVUG00000015091) #9	NPTX2 (ENSVVUG00000015063) #10	ENSVVUG00000015058	TMEM130 (ENSVVUG00000015055) #11	ENSVVUG00000015052	TRRAP (ENSVVUG00000011404) #12	SMURF1 (ENSVVUG00000009130) #13	ENSVVUG00000009096 #14	ENSVVUG00000009006	ARPC1A (ENSVVUG00000008994) #17	ARPC1B (ENSVVUG00000008857) #18	PDAP1 (ENSVVUG00000008843) #19	BUD31 (ENSVVUG00000008841) #20	PTCD1 (ENSVVUG00000008836) #21	CPSF4 (ENSVVUG00000008824) #22	ENSVVUG00000008815	ZNF394 (ENSVVUG00000008797) #24	ZKSCAN5 (ENSVVUG00000008758) #25	FAM200A (ENSVVUG00000008745)	ZNF655 (ENSVVUG00000008738) #26	TMEM225B (ENSVVUG00000008732)	ZSCAN25 (ENSVVUG00000008713) #27	ENSVVUG00000008703	ENSVVUG00000008658 #35
Caniformia_b	ANCESTRAL SPECIES	7	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT00390000006548.b.k.j.b	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.v.b.a #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.i.a #35	ENSGT00950000182958.a.b.b.j.i.b.a #35	ENSGT00950000182958.a.b.b.j.i.b.b #35	ENSGT01090000260018.B.b	ENSGT00940000163330
Mustelinae	ANCESTRAL SPECIES	64	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.v.b.a #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702
American mink	MODERN SPECIES	487					TMEM130 (ENSNVIG00000005922) #11	ENSNVIG00000005938 #12	ENSNVIG00000005969 #12	SMURF1 (ENSNVIG00000006131) #13	KPNA7 (ENSNVIG00000007636) #14	ENSNVIG00000007675	ARPC1A (ENSNVIG00000007739) #17	ARPC1B (ENSNVIG00000007787) #18	PDAP1 (ENSNVIG00000007834) #19	BUD31 (ENSNVIG00000007866) #20	PTCD1 (ENSNVIG00000007876) #21	CPSF4 (ENSNVIG00000007981) #22	ENSNVIG00000008040 #23	ENSNVIG00000008074	ZNF789 (ENSNVIG00000008084)	ENSNVIG00000008098 #24	ZKSCAN5 (ENSNVIG00000008113) #25	ZNF655 (ENSNVIG00000008181) #26	TMEM225B (ENSNVIG00000008271)	ZSCAN25 (ENSNVIG00000008324) #27	ENSNVIG00000008363
Ferret	MODERN SPECIES	366	BHLHA15 (ENSMPUG00000020102)	TECPR1 (ENSMPUG00000016564) #7	BRI3 (ENSMPUG00000016562) #8	BAIAP2L1 (ENSMPUG00000016561) #9	ENSMPUG00000016560	NPTX2 (ENSMPUG00000016559) #10	TMEM130 (ENSMPUG00000016558) #11	TRRAP (ENSMPUG00000016556) #12	SMURF1 (ENSMPUG00000016554) #13	KPNA7 (ENSMPUG00000016543) #14	ENSMPUG00000016523	ARPC1B (ENSMPUG00000016522) #18	PDAP1 (ENSMPUG00000016521) #19	BUD31 (ENSMPUG00000016519) #20	PTCD1 (ENSMPUG00000016518) #21	CPSF4 (ENSMPUG00000016508) #22	ENSMPUG00000016506	ZNF789 (ENSMPUG00000016504)	ZNF394 (ENSMPUG00000016503) #24	ENSMPUG00000016494	ENSMPUG00000016492	TMEM225B (ENSMPUG00000016491)	ZSCAN25 (ENSMPUG00000016490) #27	ENSMPUG00000020101
Ursidae	ANCESTRAL SPECIES	3	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT00390000006548.b.k.j.b	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690.b #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.b #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.v.b.a.b #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.i.a #35	ENSGT00950000182958.a.b.b.j.i.b.a #35	ENSGT00950000182958.a.b.b.j.i.b.b #35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a
Giant Panda	MODERN SPECIES	1	ENSAMEG00000008945	TECPR1 (ENSAMEG00000008910) #7	BRI3 (ENSAMEG00000025389) #8	BAIAP2L1 (ENSAMEG00000008876) #9	NPTX2 (ENSAMEG00000006901) #10	TMEM130 (ENSAMEG00000006881) #11	TRRAP (ENSAMEG00000006794) #12	SMURF1 (ENSAMEG00000006728) #13	KPNA7 (ENSAMEG00000006691) #14	ENSAMEG00000006326	ARPC1A (ENSAMEG00000006322) #17	ARPC1B (ENSAMEG00000006289) #18	PDAP1 (ENSAMEG00000006274) #19	BUD31 (ENSAMEG00000006269) #20	PTCD1 (ENSAMEG00000006224) #21	CPSF4 (ENSAMEG00000006252) #22	ENSAMEG00000027254 #23	ENSAMEG00000010231	ZNF789 (ENSAMEG00000006221)	ZNF394 (ENSAMEG00000024236) #24	ZKSCAN5 (ENSAMEG00000006213) #25	FAM200A (ENSAMEG00000030624)	ZNF655 (ENSAMEG00000006210) #26	TMEM225B (ENSAMEG00000006209)	ZSCAN25 (ENSAMEG00000028606) #27	ENSAMEG00000004376 #35	ENSAMEG00000031466	ENSAMEG00000019483	ENSAMEG00000011252	ENSAMEG00000011243	ENSAMEG00000011241
Ursus	ANCESTRAL SPECIES	32	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT00390000006548.b.k.j.b	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690.b #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a.b #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.w #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00940000165768	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.i.a #35	ENSGT00950000182958.a.b.b.j.i.b.a #35	ENSGT00950000182958.a.b.b.j.i.b.b #35	ENSGT01090000260018.B.b	ENSGT00940000163330
Polar bear	MODERN SPECIES	212	TECPR1 (ENSUMAG00000009072) #7	BRI3 (ENSUMAG00000009119) #8	BAIAP2L1 (ENSUMAG00000009124) #9	ENSUMAG00000009130	NPTX2 (ENSUMAG00000009137) #10	TMEM130 (ENSUMAG00000009146) #11	ENSUMAG00000009153 #12	SMURF1 (ENSUMAG00000009290) #13	KPNA7 (ENSUMAG00000009427) #14	ENSUMAG00000009433	ARPC1A (ENSUMAG00000009440) #17	ARPC1B (ENSUMAG00000009445) #18	PDAP1 (ENSUMAG00000009448) #19	BUD31 (ENSUMAG00000009451) #20	PTCD1 (ENSUMAG00000009455) #21	CPSF4 (ENSUMAG00000009474) #22	ENSUMAG00000009476 #23	ENSUMAG00000009480	ZNF789 (ENSUMAG00000009482)	ZNF394 (ENSUMAG00000009484) #24	ZKSCAN5 (ENSUMAG00000009486) #25	FAM200A (ENSUMAG00000009489)	ENSUMAG00000009492	ENSUMAG00000009495	ZSCAN25 (ENSUMAG00000009498) #27	ENSUMAG00000009516 #35	ENSUMAG00000009725 #35	ENSUMAG00000009839 #35	OR2AE1 (ENSUMAG00000009952)	TRIM4 (ENSUMAG00000009953)	GJC3 (ENSUMAG00000009957)
American black bear	MODERN SPECIES	1742									KPNA7 (ENSUAMG00000008014) #14	ENSUAMG00000008018	ARPC1A (ENSUAMG00000008037) #17	ARPC1B (ENSUAMG00000008040) #18	PDAP1 (ENSUAMG00000008045) #19	BUD31 (ENSUAMG00000008048) #20	PTCD1 (ENSUAMG00000008049) #21	CPSF4 (ENSUAMG00000008051) #22
Laurasiatheria_c	ANCESTRAL SPECIES	12	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b.a	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.h.a #35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a
Chiroptera	ANCESTRAL SPECIES	37										ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b.a	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.h.a #35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a
Megabat	MODERN SPECIES	3872										ENSPVAG00000007520	ARPC1A (ENSPVAG00000007521) #17	ARPC1B (ENSPVAG00000007523) #18	PDAP1 (ENSPVAG00000007524) #19	BUD31 (ENSPVAG00000007527) #20	PTCD1 (ENSPVAG00000007529) #21	CPSF4 (ENSPVAG00000007531) #22	ATP5MF (ENSPVAG00000007533) #23
Microchiroptera	ANCESTRAL SPECIES	39										ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b.a	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.h.a #35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a
Microbat	MODERN SPECIES	937	MARCHF3 (ENSMLUG00000009747)	C5orf63 (ENSMLUG00000002467)	MEGF10 (ENSMLUG00000010818)	PRRC1 (ENSMLUG00000010866)	CTXN3 (ENSMLUG00000009416)	SLC12A2 (ENSMLUG00000008327)	FBN2 (ENSMLUG00000008374)	SLC27A6 (ENSMLUG00000011142)	ISOC1 (ENSMLUG00000023846)	ENSMLUG00000029686	ENSMLUG00000010877	ARPC1A (ENSMLUG00000010912) #17	ARPC1B (ENSMLUG00000010933) #18	PDAP1 (ENSMLUG00000010959) #19	BUD31 (ENSMLUG00000010973) #20	CPSF4 (ENSMLUG00000010980) #22	PTCD1 (ENSMLUG00000010994) #21	ZNF789 (ENSMLUG00000017347)	ENSMLUG00000017348 #24	ENSMLUG00000017349	ENSMLUG00000017351	TMEM225B (ENSMLUG00000023300)	ENSMLUG00000017353 #27	ENSMLUG00000027083	ENSMLUG00000024696 #35	ENSMLUG00000026442 #35	TRIM4 (ENSMLUG00000001995)	GJC3 (ENSMLUG00000002012)	ENSMLUG00000029391	ENSMLUG00000026717	ENSMLUG00000014153
Greater horseshoe bat	MODERN SPECIES	25	C5orf63 (ENSRFEG00010001015)	MEGF10 (ENSRFEG00010001053)	PRRC1 (ENSRFEG00010001126)	CTXN3 (ENSRFEG00010001164)	CCDC192 (ENSRFEG00010001188)	SLC12A2 (ENSRFEG00010001326)	FBN2 (ENSRFEG00010001705)	SLC27A6 (ENSRFEG00010001758)	ENSRFEG00010001776	ENSRFEG00010001816	ARPC1A (ENSRFEG00010001888) #17	ARPC1B (ENSRFEG00010001904) #18	PDAP1 (ENSRFEG00010001955) #19	BUD31 (ENSRFEG00010001998) #20	PTCD1 (ENSRFEG00010002023) #21	CPSF4 (ENSRFEG00010002049) #22	ENSRFEG00010002114 #23	ENSRFEG00010002156	ZNF789 (ENSRFEG00010002174)	ZNF394 (ENSRFEG00010002189) #24	ZKSCAN5 (ENSRFEG00010002216) #25	FAM200A (ENSRFEG00010002229)	ZNF655 (ENSRFEG00010002275) #26	ENSRFEG00010002302	TMEM225B (ENSRFEG00010002313)	ZSCAN25 (ENSRFEG00010002331) #27	ENSRFEG00010002337	ENSRFEG00010002456 #35	ENSRFEG00010002590	ENSRFEG00010002619 ##35	TRIM4 (ENSRFEG00010002653)
Equus	ANCESTRAL SPECIES	22	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a.o #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000154488.A.b.a.b.a	ENSGT01050000244868.a.a.a.a.a.b.m.a	ENSGT00940000154249.a.a	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.h.b.b.a #35	ENSGT00950000183016.E.b.a.b.b.a.a.b.a.b.a	ENSGT00950000182958.a.b.b.j.h.b.a #35	ENSGT00950000182958.a.b.b.j.g.a #35	ENSGT00950000182958.a.b.b.j.h.a #35
Donkey	MODERN SPECIES	5	LMTK2 (ENSEASG00005000819)	BHLHA15 (ENSEASG00005000829)	TECPR1 (ENSEASG00005000888) #7	ENSEASG00005023687	BAIAP2L1 (ENSEASG00005001273) #9	NPTX2 (ENSEASG00005001282) #10	TMEM130 (ENSEASG00005001296) #11	TRRAP (ENSEASG00005001513) #12	SMURF1 (ENSEASG00005002115) #13	KPNA7 (ENSEASG00005002435) #14	ENSEASG00005002444 #17	ARPC1B (ENSEASG00005002462) #18	PDAP1 (ENSEASG00005033136) #19	BUD31 (ENSEASG00005032549) #20	PTCD1 (ENSEASG00005002480) #21	ENSEASG00005002487 #22	ENSEASG00005030979 #23
Horse	MODERN SPECIES	4	OCM (ENSECAG00000000243)	LMTK2 (ENSECAG00000019598)	TECPR1 (ENSECAG00000003104) #7	ENSECAG00000031100 #8	BAIAP2L1 (ENSECAG00000012734) #9	NPTX2 (ENSECAG00000012370) #10	TMEM130 (ENSECAG00000009541) #11	TRRAP (ENSECAG00000010540) #12	SMURF1 (ENSECAG00000017400) #13	KPNA7 (ENSECAG00000000554) #14	ENSECAG00000050899 #17	ARPC1B (ENSECAG00000024991) #18	PDAP1 (ENSECAG00000024426) #19	BUD31 (ENSECAG00000024151) #20	PTCD1 (ENSECAG00000016617) #21	CPSF4 (ENSECAG00000007525) #22	ATP5MF (ENSECAG00000002088) #23	ENSECAG00000036787	ENSECAG00000022200	ZNF789 (ENSECAG00000011061)	ENSECAG00000040295	ZNF394 (ENSECAG00000011549) #24	ZKSCAN5 (ENSECAG00000012353) #25	FAM200A (ENSECAG00000038549)	ZNF655 (ENSECAG00000019599) #26	ENSECAG00000058567	ZSCAN25 (ENSECAG00000019610) #27	ENSECAG00000048286	ENSECAG00000037404 #35	ENSECAG00000046571 #35	ENSECAG00000058608
Artiodactyla	ANCESTRAL SPECIES	10	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a #35	ENSGT01090000260018.B.b	ENSGT00940000163330
Suina	ANCESTRAL SPECIES	46	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00940000153104.f	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.k.a.c #35	ENSGT00950000182958.a.b.b.j.k.b #35	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a.d #35
Chacoan peccary	MODERN SPECIES	833	BHLHA15 (ENSCWAG00000010732)	TECPR1 (ENSCWAG00000010756) #7	BRI3 (ENSCWAG00000010841) #8	BAIAP2L1 (ENSCWAG00000010874) #9	NPTX2 (ENSCWAG00000010978) #10	TMEM130 (ENSCWAG00000011040) #11	TRRAP (ENSCWAG00000011543) #12	SMURF1 (ENSCWAG00000011777) #13	KPNA7 (ENSCWAG00000011846) #14	ENSCWAG00000011967	ARPC1A (ENSCWAG00000012355) #17	ARPC1B (ENSCWAG00000012397) #18	PDAP1 (ENSCWAG00000012444) #19	BUD31 (ENSCWAG00000012494) #20	PTCD1 (ENSCWAG00000012549) #21	CPSF4 (ENSCWAG00000012575) #22	ENSCWAG00000012721 #23	ENSCWAG00000012841 #24	ZKSCAN5 (ENSCWAG00000012872) #25	ZNF789 (ENSCWAG00000012955)	FAM200A (ENSCWAG00000012995)	ZNF655 (ENSCWAG00000013035) #26	TMEM225B (ENSCWAG00000013216)	ZSCAN25 (ENSCWAG00000013260) #27	ENSCWAG00000013302	ENSCWAG00000013404 #35	ENSCWAG00000015518 #35
Pig	MODERN SPECIES	11	BHLHA15 (ENSSSCG00000038489)	TECPR1 (ENSSSCG00000007601) #7	BRI3 (ENSSSCG00000037605) #8	BAIAP2L1 (ENSSSCG00000007602) #9	NPTX2 (ENSSSCG00000007603) #10	TMEM130 (ENSSSCG00000007605) #11	TRRAP (ENSSSCG00000007606) #12	SMURF1 (ENSSSCG00000030153) #13	KPNA7 (ENSSSCG00000007607) #14	ARPC1B (ENSSSCG00000007625) #18	ENSSSCG00000035534	ARPC1A (ENSSSCG00000007609) #17	PDAP1 (ENSSSCG00000033450) #19	BUD31 (ENSSSCG00000007623) #20	PTCD1 (ENSSSCG00000007622) #21	CPSF4 (ENSSSCG00000026896) #22	ENSSSCG00000034019 #23	ZNF394 (ENSSSCG00000036665) #24	ZKSCAN5 (ENSSSCG00000031809) #25	ZNF789 (ENSSSCG00000007618)	FAM200A (ENSSSCG00000029175)	ZNF655 (ENSSSCG00000007617) #26	ENSSSCG00000031485	TMEM225B (ENSSSCG00000043842)	ZSCAN25 (ENSSSCG00000039842) #27	ENSSSCG00000023320 #35	ENSSSCG00000060626	CYP3A29 (ENSSSCG00000052306) #35	ENSSSCG00000038518 #35	ENSSSCG00000053468 #35	CEP20 (ENSSSCG00000033377)
Artiodactyla_a	ANCESTRAL SPECIES	10	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a #35	ENSGT01090000260018.B.b	ENSGT00940000163330
Camelidae	ANCESTRAL SPECIES	24	ENSGT00390000004713	ENSGT00940000161875	ENSGT00940000158475	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00760000119441 #26	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00950000182958.a.b.b.j.l.a #35	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607
Alpaca	MODERN SPECIES	3419																ENSVPAG00000001522 #22
Arabian camel	MODERN SPECIES	9	ENSCDRG00005014012	LMTK2 (ENSCDRG00005013925)	TECPR1 (ENSCDRG00005013716) #7	BRI3 (ENSCDRG00005013667) #8	BAIAP2L1 (ENSCDRG00005013606) #9	NPTX2 (ENSCDRG00005013554) #10	TMEM130 (ENSCDRG00005013368) #11	ENSCDRG00005013327 #12	ENSCDRG00005012884 #12	SMURF1 (ENSCDRG00005012771) #13	KPNA7 (ENSCDRG00005012622) #14	ARPC1B (ENSCDRG00005012372) #18	PDAP1 (ENSCDRG00005012264) #19	BUD31 (ENSCDRG00005012145) #20	PTCD1 (ENSCDRG00005011961) #21	CPSF4 (ENSCDRG00005011554) #22	ENSCDRG00005011410 #23	ENSCDRG00005011387	ZNF394 (ENSCDRG00005011366) #24	ZKSCAN5 (ENSCDRG00005011297) #25	ZNF789 (ENSCDRG00005011225)	ZNF655 (ENSCDRG00005011089) #26	ENSCDRG00005011047	TMEM225B (ENSCDRG00005011012)	ZSCAN25 (ENSCDRG00005010978) #27	ENSCDRG00005010875 #35	ENSCDRG00005010827	ENSCDRG00005010801	ENSCDRG00005010679 #35	ENSCDRG00005010643 #35	ENSCDRG00005010591 #35
Artiodactyla_b	ANCESTRAL SPECIES	9	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.q.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a #35	ENSGT01090000260018.B.b	ENSGT00940000163330
Pecora	ANCESTRAL SPECIES	10	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a.q.a.c.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200.a	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a.b #35	ENSGT01090000260018.B.b	ENSGT00940000163330
Yarkand deer	MODERN SPECIES	1	LMTK2 (ENSCHYG00000017591)	BHLHA15 (ENSCHYG00000017555)	TECPR1 (ENSCHYG00000017360) #7	BRI3 (ENSCHYG00000017314) #8	BAIAP2L1 (ENSCHYG00000017061) #9	NPTX2 (ENSCHYG00000016997) #10	TMEM130 (ENSCHYG00000016668) #11	TRRAP (ENSCHYG00000013971) #12	SMURF1 (ENSCHYG00000013359) #13	KPNA7 (ENSCHYG00000013180) #14	ENSCHYG00000013066 #17	ARPC1B (ENSCHYG00000012964) #18	PDAP1 (ENSCHYG00000012875) #19	BUD31 (ENSCHYG00000012781) #20	PTCD1 (ENSCHYG00000012720) #21	CPSF4 (ENSCHYG00000012568) #22	ENSCHYG00000012401 #23	ENSCHYG00000012361	ZNF394 (ENSCHYG00000012317) #24	ZKSCAN5 (ENSCHYG00000012276) #25	ENSCHYG00000012259	ZNF789 (ENSCHYG00000012222)	ZNF655 (ENSCHYG00000012070) #26	ENSCHYG00000012030	TMEM225B (ENSCHYG00000011916)	ZSCAN25 (ENSCHYG00000011869) #27	ENSCHYG00000011123 #35	OR2AE1 (ENSCHYG00000010965)	TRIM4 (ENSCHYG00000010879)	GJC3 (ENSCHYG00000010841)	AZGP1 (ENSCHYG00000010798)
Percora_a	ANCESTRAL SPECIES	9	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a.q.a.c.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a.d #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00940000153104.f	ENSGT00510000055200.a	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a #35	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b #35	ENSGT00950000182958.a.b.b.j.k.a.b.b.b #35
Siberian musk deer	MODERN SPECIES	1230	LMTK2 (ENSMMSG00000015302)	BHLHA15 (ENSMMSG00000015278)	TECPR1 (ENSMMSG00000015173) #7	BRI3 (ENSMMSG00000015142) #8	BAIAP2L1 (ENSMMSG00000015095) #9	NPTX2 (ENSMMSG00000015078) #10	TMEM130 (ENSMMSG00000015018) #11	TRRAP (ENSMMSG00000014927) #12	SMURF1 (ENSMMSG00000014815) #13	ENSMMSG00000014765 #14	ENSMMSG00000014733 #17	ARPC1B (ENSMMSG00000014707) #18	PDAP1 (ENSMMSG00000014684) #19	BUD31 (ENSMMSG00000014656) #20	PTCD1 (ENSMMSG00000014637) #21	CPSF4 (ENSMMSG00000014539) #22	ENSMMSG00000014510 #23	ZNF394 (ENSMMSG00000014499) #24	ZKSCAN5 (ENSMMSG00000014471) #25	ZNF789 (ENSMMSG00000014456)	ZNF655 (ENSMMSG00000014427) #26	TMEM225B (ENSMMSG00000014403)	ZSCAN25 (ENSMMSG00000014381) #27	ENSMMSG00000014367	ENSMMSG00000014350	ENSMMSG00000014257 #35	ENSMMSG00000013676 #35	OR2AE1 (ENSMMSG00000013591)	TRIM4 (ENSMMSG00000013574)	GJC3 (ENSMMSG00000013564)	AZGP1 (ENSMMSG00000013554)
Bovidae	ANCESTRAL SPECIES	11	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a.q.a.c.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a.d #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00940000153104.f	ENSGT00510000055200.a	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a #35	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b #35	ENSGT00950000182958.a.b.b.j.k.a.a #35
Caprinae	ANCESTRAL SPECIES	7	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a.q.a.c.a.b.a.a.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.y #23	ENSGT00940000154488.A.b.a.b	ENSGT00510000046986.x.a.d #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00760000119441 #26	ENSGT00940000153104.f	ENSGT00510000055200.a	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a #35	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b #35	ENSGT00950000182958.a.b.b.j.k.a.b.a #35	ENSGT01090000260018.B.b
Goat	MODERN SPECIES	17	LMTK2 (ENSCHIG00000023995)	BHLHA15 (ENSCHIG00000008225)	TECPR1 (ENSCHIG00000025300) #7	BRI3 (ENSCHIG00000005545) #8	BAIAP2L1 (ENSCHIG00000003641) #9	NPTX2 (ENSCHIG00000016145) #10	TMEM130 (ENSCHIG00000025196) #11	TRRAP (ENSCHIG00000025236) #12	SMURF1 (ENSCHIG00000017881) #13	KPNA7 (ENSCHIG00000026332) #14	ENSCHIG00000013674 #17	ARPC1B (ENSCHIG00000021068) #18	PDAP1 (ENSCHIG00000024190) #19	BUD31 (ENSCHIG00000015455) #20	PTCD1 (ENSCHIG00000027000) #21	CPSF4 (ENSCHIG00000014313) #22	ENSCHIG00000021771 #23	ENSCHIG00000005075	ZNF394 (ENSCHIG00000016834) #24	ZKSCAN5 (ENSCHIG00000024258) #25	ZNF789 (ENSCHIG00000013695)	ZNF655 (ENSCHIG00000025621) #26	ENSCHIG00000023445	TMEM225B (ENSCHIG00000014873)	ZSCAN25 (ENSCHIG00000023626) #27	CYP3A24 (ENSCHIG00000012426) #35	CYP3A76 (ENSCHIG00000022924) #35	ENSCHIG00000009100 #35	OR2AE1 (ENSCHIG00000010371)	TRIM4 (ENSCHIG00000013337)	GJC3 (ENSCHIG00000005791)
Rambouillet Sheep	MODERN SPECIES	16	ENSOARG00020023544	ENSOARG00020023523	BHLHA15 (ENSOARG00020023426)	TECPR1 (ENSOARG00020023364) #7	BRI3 (ENSOARG00020023331) #8	BAIAP2L1 (ENSOARG00020023297) #9	NPTX2 (ENSOARG00020023277) #10	TMEM130 (ENSOARG00020023081) #11	TRRAP (ENSOARG00020022843) #12	SMURF1 (ENSOARG00020022545) #13	KPNA7 (ENSOARG00020022480) #14	ENSOARG00020022442 #17	ARPC1B (ENSOARG00020022406) #18	PDAP1 (ENSOARG00020022360) #19	BUD31 (ENSOARG00020022312) #20	CPSF4 (ENSOARG00020022199) #22	ENSOARG00020022141 #23	ZNF394 (ENSOARG00020022119) #24	ZKSCAN5 (ENSOARG00020022085) #25	ZNF789 (ENSOARG00020022053)	ZNF655 (ENSOARG00020021933) #26	TMEM225B (ENSOARG00020021911)	ZSCAN25 (ENSOARG00020021884) #27	ENSOARG00020021858	CYP3A24 (ENSOARG00020021603) #35	ENSOARG00020021338 #35	ENSOARG00020021224 #35	OR2AE1 (ENSOARG00020021194)	TRIM4 (ENSOARG00020021045)	GJC3 (ENSOARG00020021018)	AZGP1 (ENSOARG00020020969)
Bovinae	ANCESTRAL SPECIES	7	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a.q.a.c.a.b #17	ENSGT00950000183183.b.b.m #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a.d #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200.a	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a #35	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b #35	ENSGT00950000182958.a.b.b.j.k.a.b.b.b #35	ENSGT01090000260018.B.b
American bison	MODERN SPECIES	3140	LMTK2 (ENSBBBG00000010132)	BHLHA15 (ENSBBBG00000010137)	BRI3 (ENSBBBG00000010143) #8	ENSBBBG00000001713	BAIAP2L1 (ENSBBBG00000010154) #9	NPTX2 (ENSBBBG00000001718) #10	TMEM130 (ENSBBBG00000010173) #11	TRRAP (ENSBBBG00000000060) #12	SMURF1 (ENSBBBG00000010293) #13	KPNA7 (ENSBBBG00000001770) #14	ENSBBBG00000008539 #17	ENSBBBG00000010343 #18	PDAP1 (ENSBBBG00000010357) #19	BUD31 (ENSBBBG00000010369) #20	PTCD1 (ENSBBBG00000010388) #21	CPSF4 (ENSBBBG00000010423) #22	ENSBBBG00000010437 #23	ZNF394 (ENSBBBG00000010440) #24	ZKSCAN5 (ENSBBBG00000001814) #25	ZNF789 (ENSBBBG00000010449)	ZNF655 (ENSBBBG00000010475) #26	ENSBBBG00000001826	ZSCAN25 (ENSBBBG00000010489) #27	ENSBBBG00000001832	ENSBBBG00000010568 #35	ENSBBBG00000007021 #35	ENSBBBG00000001861 #35	ENSBBBG00000010627 #35
Bos	ANCESTRAL SPECIES	9	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a.q.a.c.a.b #17	ENSGT00950000183183.b.b.m #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a.d #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.b.a.b	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200.a	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a #35	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b #35	ENSGT00950000182958.a.b.b.j.k.a.b.b.b #35
Bos_b	ANCESTRAL SPECIES	6	ENSGT00940000158475	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a.q.a.c.a.b #17	ENSGT00950000183183.b.b.m #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a.d #23	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.b.a.b	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200.a	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a #35	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b #35	ENSGT00950000182958.a.b.b.j.k.a.b.b.b #35	ENSGT01090000260018.B.b
Hybrid Bos Indicus	MODERN SPECIES	17	LMTK2 (ENSBIXG00005002294)	BAIAP2L1 (ENSBIXG00005015423) #9	BHLHA15 (ENSBIXG00005015363)	TECPR1 (ENSBIXG00005015345) #7	BRI3 (ENSBIXG00005015306) #8	NPTX2 (ENSBIXG00005015270) #10	TMEM130 (ENSBIXG00005015225) #11	TRRAP (ENSBIXG00005015045) #12	SMURF1 (ENSBIXG00005005409) #13	KPNA7 (ENSBIXG00005014735) #14	ENSBIXG00005002057 #17	ENSBIXG00005014625 #18	PDAP1 (ENSBIXG00005014563) #19	BUD31 (ENSBIXG00005014534) #20	PTCD1 (ENSBIXG00005014503) #21	CPSF4 (ENSBIXG00005014471) #22	ENSBIXG00005014397 #23	ENSBIXG00005014375	ENSBIXG00005001905	ENSBIXG00005014311	ZKSCAN5 (ENSBIXG00005001885) #25	ENSBIXG00005014283	ZNF789 (ENSBIXG00005014273)	FAM200A (ENSBIXG00005014258)	ZNF655 (ENSBIXG00005014236) #26	ENSBIXG00005014180	ENSBIXG00005014162	ZSCAN25 (ENSBIXG00005014135) #27	ENSBIXG00005014112	ENSBIXG00005014091 #35	ENSBIXG00005013966 #35
Cow	MODERN SPECIES	17	LMTK2 (ENSBTAG00000004135)	BHLHA15 (ENSBTAG00000046010)	TECPR1 (ENSBTAG00000051678) #7	BRI3 (ENSBTAG00000022825) #8	BAIAP2L1 (ENSBTAG00000019181) #9	NPTX2 (ENSBTAG00000045896) #10	TMEM130 (ENSBTAG00000005679) #11	TRRAP (ENSBTAG00000007113) #12	SMURF1 (ENSBTAG00000007118) #13	KPNA7 (ENSBTAG00000015737) #14	ARPC1A (ENSBTAG00000004242) #17	ARPC1B (ENSBTAG00000046248) #18	PDAP1 (ENSBTAG00000044040) #19	BUD31 (ENSBTAG00000020439) #20	PTCD1 (ENSBTAG00000020440) #21	CPSF4 (ENSBTAG00000002090) #22	ATP5MF (ENSBTAG00000002094) #23	ZNF394 (ENSBTAG00000016190) #24	ENSBTAG00000053161	ZKSCAN5 (ENSBTAG00000049731) #25	ENSBTAG00000048341	ZNF789 (ENSBTAG00000047572)	FAM200A (ENSBTAG00000051481)	ZNF655 (ENSBTAG00000030951) #26	TMEM225B (ENSBTAG00000039720)	ZSCAN25 (ENSBTAG00000039512) #27	CYP3A24 (ENSBTAG00000054260) #35	CYP3A76 (ENSBTAG00000053645) #35	CYP3A74 (ENSBTAG00000052665) #35	CYP3A28 (ENSBTAG00000049666) #35	OR2AE1 (ENSBTAG00000009840)
Bos_a	ANCESTRAL SPECIES	35	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a.q.a.c.b.a #17	ENSGT00950000183183.b.a.q.b #17	ENSGT00950000183183.b.b.m #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a.d #23	ENSGT00940000154488.A.b.a.b	ENSGT00940000162347 #24	ENSGT00940000154740.a.a.c.b	ENSGT00940000162299 #25	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.b.a.b	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00510000055200.a	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b #35	ENSGT00950000182958.a.b.b.j.k.a.a #35	ENSGT01090000260018.B.b
Wild yak	MODERN SPECIES	538											ENSBMUG00000023044 #17	ENSBMUG00000023068 #18	PDAP1 (ENSBMUG00000023105) #19	BUD31 (ENSBMUG00000023129) #20	PTCD1 (ENSBMUG00000023153) #21	CPSF4 (ENSBMUG00000023198) #22	ENSBMUG00000023216 #23	ENSBMUG00000023229	ZNF394 (ENSBMUG00000023235) #24	ENSBMUG00000023244	ENSBMUG00000023259 #25	ZNF789 (ENSBMUG00000023267)	FAM200A (ENSBMUG00000023277)	ZNF655 (ENSBMUG00000023339) #26	ENSBMUG00000023294	TMEM225B (ENSBMUG00000023356)	ZSCAN25 (ENSBMUG00000023364) #27	ENSBMUG00000023367	ENSBMUG00000023477 #35	OR2AE1 (ENSBMUG00000023533)	TRIM4 (ENSBMUG00000023538)
Domestic yak	MODERN SPECIES	18	TECPR1 (ENSBGRG00000025127) #7	BRI3 (ENSBGRG00000025097) #8	BAIAP2L1 (ENSBGRG00000025058) #9	NPTX2 (ENSBGRG00000025022) #10	TMEM130 (ENSBGRG00000024946) #11	TRRAP (ENSBGRG00000024841) #12	ENSBGRG00000024800	SMURF1 (ENSBGRG00000024646) #13	KPNA7 (ENSBGRG00000024547) #14	ENSBGRG00000024515 #17	ENSBGRG00000024499 #17	ENSBGRG00000024483 #18	PDAP1 (ENSBGRG00000024415) #19	BUD31 (ENSBGRG00000024361) #20	PTCD1 (ENSBGRG00000024303) #21	CPSF4 (ENSBGRG00000024142) #22	ENSBGRG00000024105 #23	ENSBGRG00000024073	ENSBGRG00000024059	ZNF394 (ENSBGRG00000024040) #24	ZKSCAN5 (ENSBGRG00000024023) #25	ENSBGRG00000024016	ZNF789 (ENSBGRG00000023983)	FAM200A (ENSBGRG00000023967)	ZNF655 (ENSBGRG00000023838) #26	ENSBGRG00000023765	ZSCAN25 (ENSBGRG00000023712) #27	ENSBGRG00000022004 #35	ENSBGRG00000020414 #35	TRIM4 (ENSBGRG00000020221)	GJC3 (ENSBGRG00000020166)
Cetacea	ANCESTRAL SPECIES	3	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.q.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a #35	ENSGT00950000182958.a.b.b.j.k.b #35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT00940000161592
Blue whale	MODERN SPECIES	6	BHLHA15 (ENSBMSG00010015945)	TECPR1 (ENSBMSG00010015935) #7	ENSBMSG00010015916	BAIAP2L1 (ENSBMSG00010015891) #9	NPTX2 (ENSBMSG00010015873) #10	TMEM130 (ENSBMSG00010015649) #11	TRRAP (ENSBMSG00010014624) #12	SMURF1 (ENSBMSG00010014386) #13	KPNA7 (ENSBMSG00010014304) #14	ENSBMSG00010014169	ENSBMSG00010014113 #17	ARPC1B (ENSBMSG00010014056) #18	PDAP1 (ENSBMSG00010014018) #19	ENSBMSG00010013970 #20	PTCD1 (ENSBMSG00010013917) #21	ENSBMSG00010012551 #22	ENSBMSG00010012514 #23	ENSBMSG00010012488	ZNF394 (ENSBMSG00010012476) #24	ZKSCAN5 (ENSBMSG00010012465) #25	ENSBMSG00010012445	FAM200A (ENSBMSG00010012436)	ZNF655 (ENSBMSG00010012412) #26	TMEM225B (ENSBMSG00010012383)	ZSCAN25 (ENSBMSG00010012378) #27	ENSBMSG00010012316 #35	ENSBMSG00010012280 #35	ENSBMSG00010012262	ENSBMSG00010012179 #35	ENSBMSG00010012139	TRIM4 (ENSBMSG00010012118)
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.q.a.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a #35	ENSGT00950000182958.a.b.b.j.k.b #35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT00940000161592
Sperm whale	MODERN SPECIES	215												ARPC1B (ENSPCTG00005015411) #18	PDAP1 (ENSPCTG00005015297) #19	BUD31 (ENSPCTG00005015188) #20	PTCD1 (ENSPCTG00005015145) #21	CPSF4 (ENSPCTG00005014992) #22	ATP5MF (ENSPCTG00005014816) #23
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.q.a.b.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a #35	ENSGT00950000182958.a.b.b.j.k.b #35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT00940000161592
Dolphin	MODERN SPECIES	2531						TRRAP (ENSTTRG00000002957) #12	ENSTTRG00000002991	SMURF1 (ENSTTRG00000002994) #13	KPNA7 (ENSTTRG00000002998) #14	ENSTTRG00000003000	ARPC1A (ENSTTRG00000003002) #17	ARPC1B (ENSTTRG00000003003) #18	PDAP1 (ENSTTRG00000003004) #19	BUD31 (ENSTTRG00000003005) #20	PTCD1 (ENSTTRG00000003006) #21	CPSF4 (ENSTTRG00000003007) #22	ATP5MF (ENSTTRG00000003008) #23
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.q.a.b.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a #35	ENSGT00950000182958.a.b.b.j.k.b #35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT00940000161592
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.q.a.b.b #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.x.a #23	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00940000163495	ENSGT00940000164024	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT00950000182958.a.b.b.j.k.a #35	ENSGT00950000182958.a.b.b.j.k.b #35	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT00940000161592
Beluga whale	MODERN SPECIES	48	BHLHA15 (ENSDLEG00000020448)	TECPR1 (ENSDLEG00000020413) #7	BRI3 (ENSDLEG00000020405) #8	BAIAP2L1 (ENSDLEG00000020393) #9	NPTX2 (ENSDLEG00000020388) #10	TMEM130 (ENSDLEG00000020386) #11	TRRAP (ENSDLEG00000016992) #12	SMURF1 (ENSDLEG00000016179) #13	KPNA7 (ENSDLEG00000016100) #14	ENSDLEG00000015938	ARPC1A (ENSDLEG00000015896) #17	ARPC1B (ENSDLEG00000015861) #18	PDAP1 (ENSDLEG00000015839) #19	BUD31 (ENSDLEG00000015820) #20	PTCD1 (ENSDLEG00000015782) #21	CPSF4 (ENSDLEG00000015772) #22	ENSDLEG00000015761 #23	ZNF394 (ENSDLEG00000015750) #24	ZKSCAN5 (ENSDLEG00000015741) #25	ZNF789 (ENSDLEG00000015734)	ZNF655 (ENSDLEG00000015709) #26	TMEM225B (ENSDLEG00000015693)	ZSCAN25 (ENSDLEG00000015677) #27	ENSDLEG00000015665 #35	ENSDLEG00000015652 #35	ENSDLEG00000015622 #35	TRIM4 (ENSDLEG00000015596)	GJC3 (ENSDLEG00000015584)	ZKSCAN1 (ENSDLEG00000015572)	ZKSCAN1 (ENSDLEG00000015567)	ENSDLEG00000015560
Narwhal	MODERN SPECIES	299	BHLHA15 (ENSMMNG00015003745)	TECPR1 (ENSMMNG00015003675) #7	BRI3 (ENSMMNG00015003639) #8	BAIAP2L1 (ENSMMNG00015003589) #9	NPTX2 (ENSMMNG00015003563) #10	TMEM130 (ENSMMNG00015003509) #11	TRRAP (ENSMMNG00015003087) #12	SMURF1 (ENSMMNG00015002854) #13	KPNA7 (ENSMMNG00015002759) #14	ENSMMNG00015002693	ENSMMNG00015002635 #17	ARPC1B (ENSMMNG00015002613) #18	PDAP1 (ENSMMNG00015002587) #19	BUD31 (ENSMMNG00015002560) #20	PTCD1 (ENSMMNG00015002519) #21	CPSF4 (ENSMMNG00015002457) #22	ENSMMNG00015002418 #23	ZNF394 (ENSMMNG00015002396) #24	ZKSCAN5 (ENSMMNG00015002368) #25	ZNF789 (ENSMMNG00015002337)	FAM200A (ENSMMNG00015002312)	ZNF655 (ENSMMNG00015002264) #26	ENSMMNG00015002225	TMEM225B (ENSMMNG00015002205)	ZSCAN25 (ENSMMNG00015002179) #27	ENSMMNG00015002160	ENSMMNG00015002083 #35	ENSMMNG00015001865 #35	TRIM4 (ENSMMNG00015001764)	GJC3 (ENSMMNG00015001742)	ZKSCAN1 (ENSMMNG00015001718)
Vaquita	MODERN SPECIES	6	BHLHA15 (ENSPSNG00000012595)	TECPR1 (ENSPSNG00000012533) #7	ENSPSNG00000012465 #8	BAIAP2L1 (ENSPSNG00000012292) #9	NPTX2 (ENSPSNG00000012212) #10	TMEM130 (ENSPSNG00000011895) #11	TRRAP (ENSPSNG00000011688) #12	SMURF1 (ENSPSNG00000011505) #13	KPNA7 (ENSPSNG00000011346) #14	ENSPSNG00000010917	ENSPSNG00000010796 #17	ARPC1B (ENSPSNG00000010674) #18	PDAP1 (ENSPSNG00000010590) #19	BUD31 (ENSPSNG00000010482) #20	PTCD1 (ENSPSNG00000010406) #21	CPSF4 (ENSPSNG00000010306) #22	ENSPSNG00000010232 #23	ZNF394 (ENSPSNG00000010193) #24	ZKSCAN5 (ENSPSNG00000010150) #25	ZNF789 (ENSPSNG00000010094)	FAM200A (ENSPSNG00000010058)	ZNF655 (ENSPSNG00000009816) #26	TMEM225B (ENSPSNG00000013751)	ZSCAN25 (ENSPSNG00000013706) #27	ENSPSNG00000013187 #35	ENSPSNG00000012402 #35	TRIM4 (ENSPSNG00000012189)	GJC3 (ENSPSNG00000012122)	ZKSCAN1 (ENSPSNG00000012027)	ZSCAN21 (ENSPSNG00000011983)	ZNF3 (ENSPSNG00000011910)
Atlantogenata	ANCESTRAL SPECIES	21	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00760000119441 #26	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27	ENSGT00940000165702	ENSGT01090000260018.B.b	ENSGT00940000163330	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000161592	ENSGT00940000161607
Xenarthra	ANCESTRAL SPECIES	368												ENSGT00950000183183.b.a #17	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000163495	ENSGT00940000162347 #24	ENSGT00940000162299 #25	ENSGT00950000182890.B.b	ENSGT00510000055200	ENSGT00940000162113 #27
Armadillo	MODERN SPECIES	1954											ENSDNOG00000035654	ENSDNOG00000005984 #17	PDAP1 (ENSDNOG00000005922) #19	BUD31 (ENSDNOG00000005929) #20	PTCD1 (ENSDNOG00000009957) #21	CPSF4 (ENSDNOG00000006344) #22	ENSDNOG00000006351 #23	ENSDNOG00000032779	ENSDNOG00000034120	ENSDNOG00000023955	ZNF789 (ENSDNOG00000045486)	ZNF394 (ENSDNOG00000046086) #24	ZKSCAN5 (ENSDNOG00000007054) #25	ENSDNOG00000031913	ENSDNOG00000044963	TMEM225B (ENSDNOG00000037023)	ZSCAN25 (ENSDNOG00000039854) #27
Afrotheria	ANCESTRAL SPECIES	18	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23
Tenrec	MODERN SPECIES	5190																CPSF4 (ENSETEG00000002608) #22
Afrotheria_a	ANCESTRAL SPECIES	65	ENSGT00940000161824	ENSGT00510000047886.a #7	ENSGT00510000048486 #8	ENSGT00940000153560.b.b.a #9	ENSGT01060000248591.a.a.a.a #10	ENSGT00950000183188.A.b #11	ENSGT00390000017961 #12	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23
Elephant	MODERN SPECIES	403	TECPR1 (ENSLAFG00000021861) #7	BRI3 (ENSLAFG00000031280) #8	BAIAP2L1 (ENSLAFG00000011959) #9	NPTX2 (ENSLAFG00000008442) #10	TMEM130 (ENSLAFG00000030396) #11	ENSLAFG00000027562 #12	ENSLAFG00000013536 #12	SMURF1 (ENSLAFG00000012470) #13	KPNA7 (ENSLAFG00000005116) #14	ENSLAFG00000008336	ARPC1A (ENSLAFG00000014024) #17	ARPC1B (ENSLAFG00000014031) #18	PDAP1 (ENSLAFG00000014038) #19	ENSLAFG00000012201 #20	PTCD1 (ENSLAFG00000002588) #21	CPSF4 (ENSLAFG00000000159) #22	SEPTIN14 (ENSLAFG00000004021)	MRPS17 (ENSLAFG00000027907)	NIPSNAP2 (ENSLAFG00000010936)	PSPH (ENSLAFG00000010938)	CCT6A (ENSLAFG00000012791)	SUMF2 (ENSLAFG00000012794)	PHKG1 (ENSLAFG00000012802)	ENSLAFG00000012806	VKORC1L1 (ENSLAFG00000002079)	GUSB (ENSLAFG00000022591)	ASL (ENSLAFG00000014828)	CRCP (ENSLAFG00000027377)	TPST1 (ENSLAFG00000029219)	KCTD7 (ENSLAFG00000031324)	RABGEF1 (ENSLAFG00000007009)
Hyrax	MODERN SPECIES	681														BUD31 (ENSPCAG00000001837) #20	PTCD1 (ENSPCAG00000001852) #21	CPSF4 (ENSPCAG00000001892) #22	ENSPCAG00000001942 #23
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b.rb	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000156819.a.b	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.m #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.a #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000162921.m.a.b.a	ENSGT00390000002761	ENSGT00390000017626	ENSGT00390000012483	ENSGT00940000159805	ENSGT00940000159038.d	ENSGT00940000161794
Opossum	MODERN SPECIES	5	SLC29A4 (ENSMODG00000000979)	TNRC18 (ENSMODG00000000994)	FBXL18 (ENSMODG00000000999)	ACTB (ENSMODG00000002647)	FSCN1 (ENSMODG00000001028)	ENSMODG00000001052	ENSMODG00000048718	ENSMODG00000001061	SMURF1 (ENSMODG00000001079) #13	KPNA7 (ENSMODG00000001093) #14	ENSMODG00000001273	ENSMODG00000001303 #17	ARPC1B (ENSMODG00000001316) #18	PDAP1 (ENSMODG00000001324) #19	PTCD1 (ENSMODG00000001350) #21	CPSF4 (ENSMODG00000001367) #22	ENSMODG00000025496 #23	ENSMODG00000001377	MAP2K3 (ENSMODG00000042585)	TMEM11 (ENSMODG00000001408)	DHRS7B (ENSMODG00000001421)	USP22 (ENSMODG00000001435)	ENSMODG00000001449	ENSMODG00000000717	QPRT (ENSMODG00000001456)	ENSMODG00000024917	ENSMODG00000001453	ENSMODG00000005311	TBC1D10B (ENSMODG00000001468)	MYL11 (ENSMODG00000001476)	ENSMODG00000042141
Marsupialia_b	ANCESTRAL SPECIES	18	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b.rb	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000156819.a.b	ENSGT00940000158690 #13	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.m #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.r #20	ENSGT00390000014300.q #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.a #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000162921.m.a.b.a	ENSGT00390000002761	ENSGT00390000017626	ENSGT00390000012483	ENSGT00940000159805	ENSGT00940000159038.d	ENSGT00940000161794
Diprotodontia	ANCESTRAL SPECIES	14	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b.rb	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000156819.a.b	ENSGT00940000158690 #13	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.n #17	ENSGT00950000183183.b.a.m #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.q #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.a #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000162921.m.a.b.a	ENSGT00390000002761	ENSGT00390000017626	ENSGT00390000012483	ENSGT00940000159805	ENSGT00940000159038.d	ENSGT00940000161794
Wallaby	MODERN SPECIES	1566														BUD31 (ENSMEUG00000006920) #20	PTCD1 (ENSMEUG00000006930) #21	CPSF4 (ENSMEUG00000006955) #22
Diprotodontia_a	ANCESTRAL SPECIES	13	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b.rb	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000156819.a.b	ENSGT00940000158690 #13	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a.n #17	ENSGT00950000183183.b.a.m #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.q #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986.a.c #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000162921.m.a.b.a	ENSGT00390000002761	ENSGT00390000017626	ENSGT00390000012483	ENSGT00940000159805	ENSGT00940000159038.d	ENSGT00940000161794
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1043	WIPI2 (ENSVURG00010018474)	SLC29A4 (ENSVURG00010018431)	TNRC18 (ENSVURG00010018350)	FBXL18 (ENSVURG00010018291)	ACTB (ENSVURG00010018277)	FSCN1 (ENSVURG00010018267)	RNF216 (ENSVURG00010018252)	ENSVURG00010018242	SMURF1 (ENSVURG00010018224) #13	ENSVURG00010018191	ARPC1A (ENSVURG00010018169) #17	ARPC1B (ENSVURG00010018155) #18	PDAP1 (ENSVURG00010018142) #19	BUD31 (ENSVURG00010018125) #20	PTCD1 (ENSVURG00010018118) #21	ENSVURG00010018069 #22	ENSVURG00010018064 #23	ENSVURG00010018055	MAP2K3 (ENSVURG00010018041)	ENSVURG00010018034	TMEM11 (ENSVURG00010018029)	DHRS7B (ENSVURG00010018024)	USP22 (ENSVURG00010018016)	ENSVURG00010018011	ENSVURG00010018008	QPRT (ENSVURG00010018004)	ENSVURG00010018000	CD2BP2 (ENSVURG00010017994)	TBC1D10B (ENSVURG00010017989)	MYL11 (ENSVURG00010017983)	SEPTIN1 (ENSVURG00010017973)
Common wonbat	MODERN SPECIES	1028	ENSVURG00010005210	ADAMTS12 (ENSVURG00010005171)	ENSVURG00010005112	TARS1 (ENSVURG00010005032)	NPR3 (ENSVURG00010005013)	SUB1 (ENSVURG00010004948)	ZFR (ENSVURG00010004881)	ENSVURG00010004857	ENSVURG00010004841	MTMR12 (ENSVURG00010004789)	GOLPH3 (ENSVURG00010004728)	ENSVURG00010004657	ENSVURG00010004583	ENSVURG00010004574	ENSVURG00010004568	ENSVURG00010004511 #22	ENSVURG00010004456	CCBE1 (ENSVURG00010004435)	LMAN1 (ENSVURG00010004400)	CPLX4 (ENSVURG00010004397)	ENSVURG00010004389	ENSVURG00010004372	SEC11C (ENSVURG00010004365)	ZNF532 (ENSVURG00010004319)	MALT1 (ENSVURG00010004098)	ENSVURG00010004061	NEDD4L (ENSVURG00010003901)	ENSVURG00010003773	ATP8B1 (ENSVURG00010003748)	NARS1 (ENSVURG00010003689)	FECH (ENSVURG00010003679)
koala	MODERN SPECIES	130	RADIL (ENSPCIG00000017375)	MMD2 (ENSPCIG00000017376)	ENSPCIG00000017383	SLC29A4 (ENSPCIG00000029062)	FBXL18 (ENSPCIG00000015253)	ACTB (ENSPCIG00000015244)	FSCN1 (ENSPCIG00000015239)	RNF216 (ENSPCIG00000032734)	ENSPCIG00000019658	SMURF1 (ENSPCIG00000019659) #13	ARPC1A (ENSPCIG00000024794) #17	ARPC1B (ENSPCIG00000024786) #18	PDAP1 (ENSPCIG00000024781) #19	ENSPCIG00000024779 #20	PTCD1 (ENSPCIG00000024778) #21	CPSF4 (ENSPCIG00000024776) #22	ENSPCIG00000024775 #23	ENSPCIG00000024773	MAP2K3 (ENSPCIG00000001188)	ENSPCIG00000001219	TMEM11 (ENSPCIG00000001231)	DHRS7B (ENSPCIG00000001242)	USP22 (ENSPCIG00000001276)	ENSPCIG00000001333	ENSPCIG00000001344	QPRT (ENSPCIG00000001357)	ENSPCIG00000001370	CD2BP2 (ENSPCIG00000001384)	TBC1D10B (ENSPCIG00000001490)	MYL11 (ENSPCIG00000001516)	SEPTIN1 (ENSPCIG00000001537)
Tasmanian devil	MODERN SPECIES		SLC29A4 (ENSSHAG00000008906)	ENSSHAG00000010855	TNRC18 (ENSSHAG00000009526)	FBXL18 (ENSSHAG00000012245)	ACTB (ENSSHAG00000029431)	FSCN1 (ENSSHAG00000003565)	ENSSHAG00000005785	ENSSHAG00000027219	ENSSHAG00000008364 #13	ENSSHAG00000009967	ENSSHAG00000010673 #17	ARPC1B (ENSSHAG00000030346) #18	PDAP1 (ENSSHAG00000028752) #19	BUD31 (ENSSHAG00000011349) #20	PTCD1 (ENSSHAG00000011376) #21	CPSF4 (ENSSHAG00000011533) #22	ENSSHAG00000024488 #23	ENSSHAG00000021332	MAP2K3 (ENSSHAG00000014370)	NATD1 (ENSSHAG00000027545)	TMEM11 (ENSSHAG00000001753)	ENSSHAG00000025678	ENSSHAG00000024580	ENSSHAG00000002524	ENSSHAG00000005106	ENSSHAG00000005789	ENSSHAG00000032174	ENSSHAG00000021850	ENSSHAG00000031172	SEPTIN1 (ENSSHAG00000006478)	ENSSHAG00000025018
Platypus	DUPLICATION
Platypus	MODERN SPECIES	11	SLC29A4 (ENSOANG00000006568)	TNRC18 (ENSOANG00000006567)	FBXL18 (ENSOANG00000006566)	ACTB (ENSOANG00000007716)	FSCN1 (ENSOANG00000030243)	RNF216 (ENSOANG00000007717)	ENSOANG00000007718	SMURF1 (ENSOANG00000007719) #13	KPNA7 (ENSOANG00000007721) #14	ENSOANG00000007722	ARPC1A (ENSOANG00000007724) #17	ARPC1B (ENSOANG00000007725) #18	PDAP1 (ENSOANG00000007726) #19	BUD31 (ENSOANG00000007727) #20	ENSOANG00000007728 #21	CPSF4 (ENSOANG00000007729) #22	ATP5MF (ENSOANG00000007730) #23	ENSOANG00000007731	MAP2K3 (ENSOANG00000007732)	NATD1 (ENSOANG00000007733)	TMEM11 (ENSOANG00000007734)	DHRS7B (ENSOANG00000007735)	USP22 (ENSOANG00000001270)	ENSOANG00000001268	MPRIP (ENSOANG00000001265)	PLD6 (ENSOANG00000037555)	FLCN (ENSOANG00000001264)	COPS3 (ENSOANG00000001262)	NT5M (ENSOANG00000037852)	RASD1 (ENSOANG00000037843)	ENSOANG00000001259
Platypus	MODERN SPECIES	6	ENSOANG00000039626	ENSOANG00000049056	ENSOANG00000040837	ENSOANG00000003289	ENSOANG00000003288	ENSOANG00000031957	GPRC5C (ENSOANG00000003287)	GPR142 (ENSOANG00000003286)	BTBD17 (ENSOANG00000037701)	KIF19 (ENSOANG00000003284)	ENSOANG00000003283	TTYH2 (ENSOANG00000003282)	RPL38 (ENSOANG00000043838)	SDK2 (ENSOANG00000009565)	CDC42EP4 (ENSOANG00000009567)	ENSOANG00000009568 #22	ENSOANG00000009569	ENSOANG00000009566	COG1 (ENSOANG00000009570)	SSTR2 (ENSOANG00000004342)	SLC39A11 (ENSOANG00000029590)	SOX9 (ENSOANG00000005850)	KCNJ2 (ENSOANG00000008077)	KCNJ16 (ENSOANG00000008076)	MAP2K6 (ENSOANG00000008075)	ABCA5 (ENSOANG00000008073)	ENSOANG00000008072	ENSOANG00000044884	ENSOANG00000047897	ENSOANG00000036044	FAM20A (ENSOANG00000008071)
Sauria	ANCESTRAL SPECIES	12	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Archelosauria	ANCESTRAL SPECIES	12	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Cryptodira	ANCESTRAL SPECIES	12	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT00940000165557	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379
Testudinidae	ANCESTRAL SPECIES	13	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	914								ENSCABG00000019913	KPNA7 (ENSCABG00000019903) #14	ENSCABG00000019888	ARPC1A (ENSCABG00000019883) #17	ARPC1B (ENSCABG00000019881) #18	PDAP1 (ENSCABG00000019879) #19	BUD31 (ENSCABG00000019878) #20	PTCD1 (ENSCABG00000019877) #21	CPSF4 (ENSCABG00000019876) #22	ENSCABG00000019873	ENSCABG00000019871	MAP2K3 (ENSCABG00000019870)	NATD1 (ENSCABG00000019869)	TMEM11 (ENSCABG00000019868)	DHRS7B (ENSCABG00000019866)
Abingdon island giant tortoise	MODERN SPECIES	1991	ENSCABG00000012991	FAAP100 (ENSCABG00000012989)	NPLOC4 (ENSCABG00000011932)	TSPAN10 (ENSCABG00000011902)	PDE6G (ENSCABG00000011899)	CCDC137 (ENSCABG00000011897)	GPRC5C (ENSCABG00000011895)	GPR142 (ENSCABG00000011892)	BTBD17 (ENSCABG00000011881)	KIF19 (ENSCABG00000011844)	ENSCABG00000011837	TTYH2 (ENSCABG00000011817)	RPL38 (ENSCABG00000011815)	SDK2 (ENSCABG00000011804)	CDC42EP4 (ENSCABG00000011799)	ENSCABG00000011797 #22	C17orf80 (ENSCABG00000011795)	FAM104B (ENSCABG00000011793)	COG1 (ENSCABG00000011509)	SSTR2 (ENSCABG00000011501)	SLC39A11 (ENSCABG00000011441)	SOX9 (ENSCABG00000011428)	KCNJ2 (ENSCABG00000011427)	KCNJ16 (ENSCABG00000011422)	MAP2K6 (ENSCABG00000011411)	ABCA5 (ENSCABG00000010973)	ENSCABG00000010942	ENSCABG00000010935	ENSCABG00000010932	ENSCABG00000010821	ENSCABG00000010799
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	1	SLC29A4 (ENSGEVG00005007844)	TNRC18 (ENSGEVG00005007897)	FBXL18 (ENSGEVG00005007947)	ACTB (ENSGEVG00005007981)	FSCN1 (ENSGEVG00005007997)	RNF216 (ENSGEVG00005008033)	ENSGEVG00005008108	SMURF1 (ENSGEVG00005008131) #13	KPNA7 (ENSGEVG00005008225) #14	ENSGEVG00005008415	ARPC1A (ENSGEVG00005008567) #17	ARPC1B (ENSGEVG00005008587) #18	PDAP1 (ENSGEVG00005008608) #19	BUD31 (ENSGEVG00005008621) #20	PTCD1 (ENSGEVG00005008641) #21	CPSF4 (ENSGEVG00005008657) #22	ENSGEVG00005008673	ENSGEVG00005008686	MAP2K3 (ENSGEVG00005008697)	NATD1 (ENSGEVG00005008718)	TMEM11 (ENSGEVG00005008733)	DHRS7B (ENSGEVG00005008744)	USP22 (ENSGEVG00005008766)	TNFRSF13B (ENSGEVG00005008795)	MPRIP (ENSGEVG00005008868)	PLD6 (ENSGEVG00005009155)	FLCN (ENSGEVG00005009194)	COPS3 (ENSGEVG00005009243)	NT5M (ENSGEVG00005009282)	MED9 (ENSGEVG00005009305)	RASD1 (ENSGEVG00005009324)
Goode s thornscrub tortoise	MODERN SPECIES	6	FAAP100 (ENSGEVG00005006954)	NPLOC4 (ENSGEVG00005006868)	TSPAN10 (ENSGEVG00005006706)	PDE6G (ENSGEVG00005006670)	OXLD1 (ENSGEVG00005006642)	CCDC137 (ENSGEVG00005006627)	GPRC5C (ENSGEVG00005006616)	GPR142 (ENSGEVG00005006600)	BTBD17 (ENSGEVG00005006577)	KIF19 (ENSGEVG00005006458)	ENSGEVG00005006419	TTYH2 (ENSGEVG00005006304)	ENSGEVG00005006280	SDK2 (ENSGEVG00005006134)	ENSGEVG00005006107	ENSGEVG00005006080 #22	C17orf80 (ENSGEVG00005006057)	FAM104B (ENSGEVG00005006034)	COG1 (ENSGEVG00005005847)	SSTR2 (ENSGEVG00005005700)	SLC39A11 (ENSGEVG00005005674)	SOX9 (ENSGEVG00005005651)	KCNJ2 (ENSGEVG00005005634)	KCNJ16 (ENSGEVG00005005610)	MAP2K6 (ENSGEVG00005005590)	ABCA5 (ENSGEVG00005005505)	ENSGEVG00005004952	ENSGEVG00005004463	ENSGEVG00005004315	ENSGEVG00005004295	PRKAR1A (ENSGEVG00005004268)
Emydidae	ANCESTRAL SPECIES	12	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	37	SLC29A4 (ENSTMTG00000014089)	TNRC18 (ENSTMTG00000013974)	FBXL18 (ENSTMTG00000013950)	ACTB (ENSTMTG00000013939)	FSCN1 (ENSTMTG00000013932)	RNF216 (ENSTMTG00000013919)	ENSTMTG00000013912	SMURF1 (ENSTMTG00000013503) #13	KPNA7 (ENSTMTG00000013331) #14	ENSTMTG00000013213	ARPC1A (ENSTMTG00000013201) #17	ARPC1B (ENSTMTG00000013193) #18	PDAP1 (ENSTMTG00000013184) #19	BUD31 (ENSTMTG00000013181) #20	PTCD1 (ENSTMTG00000013170) #21	CPSF4 (ENSTMTG00000013163) #22	ATP5MF (ENSTMTG00000018744) #23	ENSTMTG00000018727	MAP2K3 (ENSTMTG00000018672)	NATD1 (ENSTMTG00000018661)	TMEM11 (ENSTMTG00000018651)	DHRS7B (ENSTMTG00000018635)	USP22 (ENSTMTG00000018604)	TNFRSF13B (ENSTMTG00000018580)	MPRIP (ENSTMTG00000018449)	PLD6 (ENSTMTG00000018425)	FLCN (ENSTMTG00000018397)	COPS3 (ENSTMTG00000018378)	NT5M (ENSTMTG00000018365)	MED9 (ENSTMTG00000018356)	RASD1 (ENSTMTG00000018347)
Three-toed box turtle	MODERN SPECIES	90	FSCN2 (ENSTMTG00000016811)	ENSTMTG00000016815	NPLOC4 (ENSTMTG00000016869)	TSPAN10 (ENSTMTG00000017442)	PDE6G (ENSTMTG00000017647)	CCDC137 (ENSTMTG00000017662)	GPRC5C (ENSTMTG00000017680)	GPR142 (ENSTMTG00000017687)	BTBD17 (ENSTMTG00000017702)	KIF19 (ENSTMTG00000017731)	ENSTMTG00000017774	TTYH2 (ENSTMTG00000017873)	RPL38 (ENSTMTG00000017943)	SDK2 (ENSTMTG00000017996)	ENSTMTG00000018493	ENSTMTG00000018507 #22	C17orf80 (ENSTMTG00000018527)	FAM104B (ENSTMTG00000018538)	COG1 (ENSTMTG00000018549)	SSTR2 (ENSTMTG00000018568)	SLC39A11 (ENSTMTG00000018579)	SOX9 (ENSTMTG00000018598)	KCNJ2 (ENSTMTG00000018606)	KCNJ16 (ENSTMTG00000018612)	MAP2K6 (ENSTMTG00000018628)	ABCA5 (ENSTMTG00000018717)	ENSTMTG00000019664	ENSTMTG00000021803	ENSTMTG00000022644	FAM20A (ENSTMTG00000022656)	ENSTMTG00000003014
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	2421	SLC29A4 (ENSCPBG00000020775)	TNRC18 (ENSCPBG00000020786)	FBXL18 (ENSCPBG00000020806)	ACTB (ENSCPBG00000020809)	FSCN1 (ENSCPBG00000020810)	RNF216 (ENSCPBG00000020812)	ENSCPBG00000020819	SMURF1 (ENSCPBG00000020821) #13	KPNA7 (ENSCPBG00000020833) #14	ENSCPBG00000020844	ARPC1A (ENSCPBG00000020854) #17	ARPC1B (ENSCPBG00000020858) #18	PDAP1 (ENSCPBG00000020862) #19	BUD31 (ENSCPBG00000020864) #20	PTCD1 (ENSCPBG00000020866) #21	CPSF4 (ENSCPBG00000020869) #22	ATP5MF (ENSCPBG00000020871) #23	MAP2K3 (ENSCPBG00000020879)	NATD1 (ENSCPBG00000020883)	TMEM11 (ENSCPBG00000020885)	DHRS7B (ENSCPBG00000020886)	USP22 (ENSCPBG00000020888)	TNFRSF13B (ENSCPBG00000020890)	MPRIP (ENSCPBG00000020895)	PLD6 (ENSCPBG00000020910)	FLCN (ENSCPBG00000020915)	COPS3 (ENSCPBG00000020918)	NT5M (ENSCPBG00000020919)	MED9 (ENSCPBG00000020921)	RASD1 (ENSCPBG00000020922)	PEMT (ENSCPBG00000020924)
painted turtle	MODERN SPECIES	696	ENSCPBG00000010394	NPLOC4 (ENSCPBG00000010388)	TSPAN10 (ENSCPBG00000010385)	PDE6G (ENSCPBG00000010382)	OXLD1 (ENSCPBG00000010380)	CCDC137 (ENSCPBG00000010378)	GPRC5C (ENSCPBG00000010371)	GPR142 (ENSCPBG00000010367)	BTBD17 (ENSCPBG00000010366)	KIF19 (ENSCPBG00000010319)	ENSCPBG00000010302	TTYH2 (ENSCPBG00000010298)	RPL38 (ENSCPBG00000010293)	SDK2 (ENSCPBG00000010273)	ENSCPBG00000010270	ENSCPBG00000010269 #22	C17orf80 (ENSCPBG00000010266)	FAM104B (ENSCPBG00000010265)	COG1 (ENSCPBG00000010264)	SSTR2 (ENSCPBG00000010261)	SLC39A11 (ENSCPBG00000010245)	SOX9 (ENSCPBG00000010236)	KCNJ2 (ENSCPBG00000010228)	KCNJ16 (ENSCPBG00000010225)	ENSCPBG00000010221	MAP2K6 (ENSCPBG00000010219)	ABCA5 (ENSCPBG00000010213)	ENSCPBG00000010012	ENSCPBG00000009816	ENSCPBG00000009734	ENSCPBG00000009728
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	264	MMD2 (ENSPSIG00000010464)	WIPI2 (ENSPSIG00000010520)	SLC29A4 (ENSPSIG00000010626)	TNRC18 (ENSPSIG00000010641)	FBXL18 (ENSPSIG00000010848)	ACTB (ENSPSIG00000010875)	FSCN1 (ENSPSIG00000010881)	RNF216 (ENSPSIG00000010937)	ENSPSIG00000001738	SMURF1 (ENSPSIG00000010953) #13	ENSPSIG00000010963	ARPC1A (ENSPSIG00000011034) #17	PDAP1 (ENSPSIG00000011087) #19	BUD31 (ENSPSIG00000011153) #20	PTCD1 (ENSPSIG00000011184) #21	CPSF4 (ENSPSIG00000011229) #22	ATP5MF (ENSPSIG00000011253) #23	ENSPSIG00000001742	MAP2K3 (ENSPSIG00000011264)
Chinese turtle	MODERN SPECIES	764															CDC42EP4 (ENSPSIG00000003678)	ENSPSIG00000018198 #22	C17orf80 (ENSPSIG00000018196)	FAM104B (ENSPSIG00000018194)	COG1 (ENSPSIG00000018184)	SSTR2 (ENSPSIG00000000013)	ENSPSIG00000018182	SH3GLB2 (ENSPSIG00000018168)	NUP188 (ENSPSIG00000018163)	DOLK (ENSPSIG00000000012)	PHYHD1 (ENSPSIG00000018156)	LRRC8A (ENSPSIG00000000011)	KYAT1 (ENSPSIG00000018153)	SPOUT1 (ENSPSIG00000018152)	ENDOG (ENSPSIG00000018149)	TBC1D13 (ENSPSIG00000018124)	ZER1 (ENSPSIG00000018118)
Archosauria	ANCESTRAL SPECIES	8	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	46	WIPI2 (ENSCPRG00005016270)	SLC29A4 (ENSCPRG00005016263)	FBXL18 (ENSCPRG00005016208)	ACTB (ENSCPRG00005016203)	FSCN1 (ENSCPRG00005016199)	RNF216 (ENSCPRG00005016190)	ENSCPRG00005016185	SMURF1 (ENSCPRG00005016127) #13	KPNA7 (ENSCPRG00005016120) #14	ENSCPRG00005016109	ARPC1A (ENSCPRG00005016070) #17	ARPC1B (ENSCPRG00005016064) #18	PDAP1 (ENSCPRG00005016062) #19	BUD31 (ENSCPRG00005016057) #20	PTCD1 (ENSCPRG00005016054) #21	CPSF4 (ENSCPRG00005016053) #22	ATP5MF (ENSCPRG00005016051) #23	ENSCPRG00005016049	MAP2K3 (ENSCPRG00005016043)	NATD1 (ENSCPRG00005016042)	TMEM11 (ENSCPRG00005016040)	DHRS7B (ENSCPRG00005016037)	USP22 (ENSCPRG00005016028)	TNFRSF13B (ENSCPRG00005016024)	MPRIP (ENSCPRG00005016012)	PLD6 (ENSCPRG00005016009)	FLCN (ENSCPRG00005016006)	COPS3 (ENSCPRG00005016001)	NT5M (ENSCPRG00005015997)	MED9 (ENSCPRG00005015995)	RASD1 (ENSCPRG00005015994)
Australian saltwater crocodile	MODERN SPECIES	47	FAAP100 (ENSCPRG00005018387)	NPLOC4 (ENSCPRG00005018390)	TSPAN10 (ENSCPRG00005018392)	PDE6G (ENSCPRG00005018393)	ENSCPRG00005018396	CCDC137 (ENSCPRG00005018398)	GPRC5C (ENSCPRG00005018401)	GPR142 (ENSCPRG00005018403)	BTBD17 (ENSCPRG00005018405)	KIF19 (ENSCPRG00005018407)	DNAI2 (ENSCPRG00005018412)	TTYH2 (ENSCPRG00005018414)	RPL38 (ENSCPRG00005018419)	SDK2 (ENSCPRG00005018431)	CDC42EP4 (ENSCPRG00005018467)	ENSCPRG00005018469 #22	ENSCPRG00005018472	FAM104B (ENSCPRG00005018474)	COG1 (ENSCPRG00005018477)	SSTR2 (ENSCPRG00005018484)	SLC39A11 (ENSCPRG00005018486)	SOX9 (ENSCPRG00005018493)	KCNJ2 (ENSCPRG00005018497)	KCNJ16 (ENSCPRG00005018499)	MAP2K6 (ENSCPRG00005018500)	ABCA5 (ENSCPRG00005018505)	ENSCPRG00005018528	ENSCPRG00005018540	ENSCPRG00005018543	ENSCPRG00005018545	FAM20A (ENSCPRG00005018549)
Aves	ANCESTRAL SPECIES	11	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	989							RNF216 (ENSSCUG00000018343)	ENSSCUG00000018342	SMURF1 (ENSSCUG00000018341) #13	KPNA7 (ENSSCUG00000018339) #14	ENSSCUG00000018338	ARPC1A (ENSSCUG00000018336) #17	PDAP1 (ENSSCUG00000018335) #19	BUD31 (ENSSCUG00000018334) #20	PTCD1 (ENSSCUG00000018329) #21	CPSF4 (ENSSCUG00000018325) #22	ATP5MF (ENSSCUG00000018324) #23	ENSSCUG00000018322	MAP2K3 (ENSSCUG00000018318)	NATD1 (ENSSCUG00000018315)	TMEM11 (ENSSCUG00000018314)	DHRS7B (ENSSCUG00000018313)	USP22 (ENSSCUG00000018311)	MPRIP (ENSSCUG00000018303)	FLCN (ENSSCUG00000018296)	COPS3 (ENSSCUG00000018292)	MED9 (ENSSCUG00000018286)	RASD1 (ENSSCUG00000018285)	PEMT (ENSSCUG00000018283)
African ostrich	MODERN SPECIES	130																ENSSCUG00000001749 #22	ENSSCUG00000001746	FAM104B (ENSSCUG00000001744)	COG1 (ENSSCUG00000001718)	SSTR2 (ENSSCUG00000001703)	SLC39A11 (ENSSCUG00000001699)
Neognathae	ANCESTRAL SPECIES	10	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Galloanserae	ANCESTRAL SPECIES	9	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Phasianidae	ANCESTRAL SPECIES	10	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032.a	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Japanese quail	MODERN SPECIES	5	SLC29A4 (ENSCJPG00005000281)	TNRC18 (ENSCJPG00005000297)	FBXL18 (ENSCJPG00005000327)	ACTB (ENSCJPG00005000336)	FSCN1 (ENSCJPG00005000395)	RNF216 (ENSCJPG00005000414)	ENSCJPG00005001323	SMURF1 (ENSCJPG00005001326) #13	ENSCJPG00005001328	KPNA7 (ENSCJPG00005001331) #14	ARPC1A (ENSCJPG00005001335) #17	ARPC1B (ENSCJPG00005001338) #18	PDAP1 (ENSCJPG00005001340) #19	BUD31 (ENSCJPG00005001343) #20	PTCD1 (ENSCJPG00005001347) #21	CPSF4 (ENSCJPG00005001353) #22	ATP5MF (ENSCJPG00005001357) #23	ENSCJPG00005001360	MAP2K3 (ENSCJPG00005001368)	NATD1 (ENSCJPG00005001379)	TMEM11 (ENSCJPG00005001383)	DHRS7B (ENSCJPG00005001385)	USP22 (ENSCJPG00005001392)	TNFRSF13B (ENSCJPG00005001394)	MPRIP (ENSCJPG00005001400)	PLD6 (ENSCJPG00005001422)	FLCN (ENSCJPG00005001424)	COPS3 (ENSCJPG00005001436)	NT5M (ENSCJPG00005001447)	MED9 (ENSCJPG00005001452)	RASD1 (ENSCJPG00005001458)
Phasianidae_b	ANCESTRAL SPECIES	10	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032.a	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Turkey	MODERN SPECIES	7	ENSMGAG00000004443	NT5M (ENSMGAG00000004438)	ENSMGAG00000019719	ENSMGAG00000004388	FLCN (ENSMGAG00000004370)	ENSMGAG00000004302	ENSMGAG00000004369	ENSMGAG00000019138	ENSMGAG00000004299	TNFRSF13B (ENSMGAG00000004358)	ENSMGAG00000015545	ENSMGAG00000004263	NATD1 (ENSMGAG00000004258)	ENSMGAG00000004264	ENSMGAG00000015541	CPSF4 (ENSMGAG00000004235) #22	ENSMGAG00000018852 #23	BUD31 (ENSMGAG00000004195) #20	ENSMGAG00000004211 #21	ENSMGAG00000004113 #17	ENSMGAG00000004152 #18	PDAP1 (ENSMGAG00000004176) #19	KPNA7 (ENSMGAG00000004051) #14	ENSMGAG00000021321	ENSMGAG00000003976	ENSMGAG00000003983 #13	ENSMGAG00000003930	ENSMGAG00000016921	ENSMGAG00000003905	ENSMGAG00000018626	ENSMGAG00000003960
Chicken	DUPLICATION
Chicken	MODERN SPECIES	5	WIPI2 (ENSGALG00010021162)	SLC29A4 (ENSGALG00010021172)	TNRC18 (ENSGALG00010021188)	FBXL18 (ENSGALG00010021214)	ACTB (ENSGALG00010021232)	FSCN1 (ENSGALG00010021237)	RNF216 (ENSGALG00010021251)	ENSGALG00010021271	SMURF1 (ENSGALG00010021301) #13	KPNA7 (ENSGALG00010021313) #14	ARPC1A (ENSGALG00010021325) #17	ARPC1B (ENSGALG00010021362) #18	PDAP1 (ENSGALG00010021401) #19	BUD31 (ENSGALG00010021414) #20	PTCD1 (ENSGALG00010021424) #21	CPSF4 (ENSGALG00010021431) #22	ATP5J2 (ENSGALG00010021454) #23	KCNJ12 (ENSGALG00010021526)	MAP2K3 (ENSGALG00010021550)	NATD1 (ENSGALG00010021573)	TMEM11 (ENSGALG00010021610)	DHRS7B (ENSGALG00010021629)	USP22 (ENSGALG00010021655)	TNFRSF13B (ENSGALG00010021671)	MPRIP (ENSGALG00010021689)	PLD6 (ENSGALG00010021702)	FLCN (ENSGALG00010021700)	COPS3 (ENSGALG00010021723)	NT5M (ENSGALG00010017495)	MED9 (ENSGALG00010017503)	RASD1 (ENSGALG00010017509)
Chicken	MODERN SPECIES	9	TSPAN10 (ENSGALG00010029512)	PDE6G (ENSGALG00010029510)	ENSGALG00010029508	OXLD1 (ENSGALG00010029506)	GPRC5C (ENSGALG00010030106)	GPR142 (ENSGALG00010029504)	BTBD17 (ENSGALG00010029502)	KIF19 (ENSGALG00010029499)	DNAI2 (ENSGALG00010029497)	TTYH2 (ENSGALG00010029496)	RPL38 (ENSGALG00010029495)	ENSGALG00010029493	SDK2 (ENSGALG00010029492)	ENSGALG00010029488	CDC42EP4 (ENSGALG00010029487)	ENSGALG00010029483 #22	ENSGALG00010029480	FAM104A (ENSGALG00010029477)	COG1 (ENSGALG00010029473)	SSTR2 (ENSGALG00010029470)	SLC39A11 (ENSGALG00010029466)	SOX9 (ENSGALG00010029771)	KCNJ2 (ENSGALG00010029768)	KCNJ16 (ENSGALG00010029765)	MAP2K6 (ENSGALG00010029424)	ABCA5 (ENSGALG00010029418)	ENSGALG00010029417	ENSGALG00010029409	FAM20A (ENSGALG00010029403)	PRKAR1A (ENSGALG00010029399)	WIPI1 (ENSGALG00010029396)
Anatidae	ANCESTRAL SPECIES	7	ENSGT00940000157972	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Duck	MODERN SPECIES	6	AP5Z1 (ENSAPLG00000009165)	ENSAPLG00000026450	WIPI2 (ENSAPLG00000009715)	SLC29A4 (ENSAPLG00000010012)	TNRC18 (ENSAPLG00000028315)	FBXL18 (ENSAPLG00000010121)	ACTB (ENSAPLG00000010147)	RNF216 (ENSAPLG00000010364)	SMURF1 (ENSAPLG00000010476) #13	KPNA7 (ENSAPLG00000010767) #14	ARPC1A (ENSAPLG00000011059) #17	ARPC1B (ENSAPLG00000020035) #18	PDAP1 (ENSAPLG00000006542) #19	BUD31 (ENSAPLG00000006748) #20	PTCD1 (ENSAPLG00000006862) #21	CPSF4 (ENSAPLG00000018571) #22	ATP5MF (ENSAPLG00000007021) #23	ENSAPLG00000027874	ENSAPLG00000026453	NATD1 (ENSAPLG00000007590)	TMEM11 (ENSAPLG00000028416)	DHRS7B (ENSAPLG00000007599)	USP22 (ENSAPLG00000002524)	TNFRSF13B (ENSAPLG00000021324)	MPRIP (ENSAPLG00000030840)	PLD6 (ENSAPLG00000004112)	FLCN (ENSAPLG00000004124)	COPS3 (ENSAPLG00000004443)	NT5M (ENSAPLG00000008923)	ENSAPLG00000021768	ENSAPLG00000018961
Pink-footed goose	DUPLICATION
Pink-footed goose	MODERN SPECIES	59	MMD2 (ENSABRG00000002148)	WIPI2 (ENSABRG00000002125)	SLC29A4 (ENSABRG00000002112)	TNRC18 (ENSABRG00000002069)	FBXL18 (ENSABRG00000002032)	ACTB (ENSABRG00000002004)	ENSABRG00000001980	RNF216 (ENSABRG00000001919)	SMURF1 (ENSABRG00000001864) #13	KPNA7 (ENSABRG00000001828) #14	ARPC1A (ENSABRG00000001764) #17	ARPC1B (ENSABRG00000001702) #18	PDAP1 (ENSABRG00000001687) #19	BUD31 (ENSABRG00000001589) #20	PTCD1 (ENSABRG00000001568) #21	CPSF4 (ENSABRG00000001549) #22	ATP5MF (ENSABRG00000001534) #23	ENSABRG00000001514	MAP2K3 (ENSABRG00000001410)	NATD1 (ENSABRG00000001319)	TMEM11 (ENSABRG00000001303)	DHRS7B (ENSABRG00000001258)	USP22 (ENSABRG00000001162)	TNFRSF13B (ENSABRG00000001137)	MPRIP (ENSABRG00000000875)	PLD6 (ENSABRG00000000855)	FLCN (ENSABRG00000000811)	COPS3 (ENSABRG00000015617)	NT5M (ENSABRG00000015611)	MED9 (ENSABRG00000015607)	RASD1 (ENSABRG00000015604)
Pink-footed goose	MODERN SPECIES	241	FSCN2 (ENSABRG00000010882)	FAAP100 (ENSABRG00000010878)	NPLOC4 (ENSABRG00000010875)	TSPAN10 (ENSABRG00000010872)	PDE6G (ENSABRG00000010862)	OXLD1 (ENSABRG00000010853)	CCDC137 (ENSABRG00000010844)	GPR142 (ENSABRG00000010838)	BTBD17 (ENSABRG00000010831)	GPRC5C (ENSABRG00000010821)	ENSABRG00000010807	DNAI2 (ENSABRG00000010786)	TTYH2 (ENSABRG00000010771)	RPL38 (ENSABRG00000010762)	ENSABRG00000010613	ENSABRG00000010605 #22	ENSABRG00000010602	FAM104B (ENSABRG00000010593)	COG1 (ENSABRG00000010561)	SSTR2 (ENSABRG00000010556)	SLC39A11 (ENSABRG00000010549)	SOX9 (ENSABRG00000010533)
Neognathae_b	ANCESTRAL SPECIES	12	ENSGT00940000157972	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Neognathae_c	ANCESTRAL SPECIES	14	ENSGT00940000157972	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Kakapo	MODERN SPECIES	21	WIPI2 (ENSSHBG00005009312)	SLC29A4 (ENSSHBG00005009331)	TNRC18 (ENSSHBG00005009360)	FBXL18 (ENSSHBG00005009478)	ACTB (ENSSHBG00005009495)	FSCN1 (ENSSHBG00005009511)	RNF216 (ENSSHBG00005009526)	ENSSHBG00005009548	SMURF1 (ENSSHBG00005009565) #13	KPNA7 (ENSSHBG00005009584) #14	ARPC1A (ENSSHBG00005009628) #17	ARPC1B (ENSSHBG00005009647) #18	PDAP1 (ENSSHBG00005009661) #19	BUD31 (ENSSHBG00005009702) #20	PTCD1 (ENSSHBG00005009712) #21	CPSF4 (ENSSHBG00005009724) #22	ATP5MF (ENSSHBG00005009739) #23	ENSSHBG00005009753	MAP2K3 (ENSSHBG00005009760)	NATD1 (ENSSHBG00005009769)	TMEM11 (ENSSHBG00005009779)	DHRS7B (ENSSHBG00005009791)	USP22 (ENSSHBG00005009835)	TNFRSF13B (ENSSHBG00005009892)	MPRIP (ENSSHBG00005009910)	PLD6 (ENSSHBG00005009927)	FLCN (ENSSHBG00005009939)	COPS3 (ENSSHBG00005009970)	NT5M (ENSSHBG00005009999)	MED9 (ENSSHBG00005010021)	RASD1 (ENSSHBG00005010032)
Golden eagle	MODERN SPECIES	17	WIPI2 (ENSACCG00020013177)	SLC29A4 (ENSACCG00020013147)	TNRC18 (ENSACCG00020013096)	FBXL18 (ENSACCG00020013037)	ACTB (ENSACCG00020013020)	FSCN1 (ENSACCG00020012998)	RNF216 (ENSACCG00020012969)	ENSACCG00020012955	SMURF1 (ENSACCG00020012938) #13	KPNA7 (ENSACCG00020012868) #14	ARPC1A (ENSACCG00020012791) #17	ARPC1B (ENSACCG00020012730) #18	PDAP1 (ENSACCG00020012701) #19	BUD31 (ENSACCG00020012680) #20	PTCD1 (ENSACCG00020012652) #21	CPSF4 (ENSACCG00020012629) #22	ATP5MF (ENSACCG00020012613) #23	ENSACCG00020012599	MAP2K3 (ENSACCG00020012553)	NATD1 (ENSACCG00020012513)	TMEM11 (ENSACCG00020012496)	DHRS7B (ENSACCG00020012388)	USP22 (ENSACCG00020012331)	TNFRSF13B (ENSACCG00020012289)	MPRIP (ENSACCG00020012175)	PLD6 (ENSACCG00020012032)	FLCN (ENSACCG00020011997)	COPS3 (ENSACCG00020011957)	NT5M (ENSACCG00020011921)	MED9 (ENSACCG00020011908)	RASD1 (ENSACCG00020011882)
Passeriformes	ANCESTRAL SPECIES	11	ENSGT00940000157972	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.o #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379
Great tit	DUPLICATION
Great tit	MODERN SPECIES	5	MMD2 (ENSPMJG00000017393)	WIPI2 (ENSPMJG00000017394)	SLC29A4 (ENSPMJG00000017395)	TNRC18 (ENSPMJG00000017396)	FBXL18 (ENSPMJG00000017399)	ACTB (ENSPMJG00000017400)	FSCN1 (ENSPMJG00000017401)	RNF216 (ENSPMJG00000017402)	SMURF1 (ENSPMJG00000017403) #13	KPNA7 (ENSPMJG00000017404) #14	ARPC1A (ENSPMJG00000017406) #17	ARPC1B (ENSPMJG00000017407) #18	PDAP1 (ENSPMJG00000017408) #19	BUD31 (ENSPMJG00000017409) #20	PTCD1 (ENSPMJG00000017410) #21	CPSF4 (ENSPMJG00000017411) #22	ATP5MF (ENSPMJG00000017412) #23	ENSPMJG00000017413	MAP2K3 (ENSPMJG00000017414)	NATD1 (ENSPMJG00000017415)	ENSPMJG00000017416	ENSPMJG00000017417	DHRS7B (ENSPMJG00000017419)	USP22 (ENSPMJG00000017420)	TNFRSF13B (ENSPMJG00000017421)	MPRIP (ENSPMJG00000017422)	FLCN (ENSPMJG00000017423)	COPS3 (ENSPMJG00000017424)	NT5M (ENSPMJG00000017425)	MED9 (ENSPMJG00000017426)	RASD1 (ENSPMJG00000017427)
Great tit	MODERN SPECIES	8	ACTG1 (ENSPMJG00000017037)	FSCN2 (ENSPMJG00000017038)	FAAP100 (ENSPMJG00000017039)	ENSPMJG00000017040	NPLOC4 (ENSPMJG00000017041)	TSPAN10 (ENSPMJG00000017042)	OXLD1 (ENSPMJG00000017043)	CCDC137 (ENSPMJG00000017044)	GPRC5C (ENSPMJG00000017045)	BTBD17 (ENSPMJG00000017046)	GPR142 (ENSPMJG00000017047)	ENSPMJG00000017048	TTYH2 (ENSPMJG00000017049)	RPL38 (ENSPMJG00000017050)	ENSPMJG00000017052	ENSPMJG00000017053 #22	ENSPMJG00000017054	FAM104B (ENSPMJG00000017055)	COG1 (ENSPMJG00000017056)	SSTR2 (ENSPMJG00000017057)	SLC39A11 (ENSPMJG00000017058)	SOX9 (ENSPMJG00000017065)	KCNJ2 (ENSPMJG00000017073)	KCNJ16 (ENSPMJG00000017075)	MAP2K6 (ENSPMJG00000017080)	ENSPMJG00000017081	ABCA5 (ENSPMJG00000017082)	ENSPMJG00000017083	ENSPMJG00000017088	FAM20A (ENSPMJG00000017092)	PRKAR1A (ENSPMJG00000017112)
Passeriformes_d	ANCESTRAL SPECIES	11	ENSGT00940000157972	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.o #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES	5	MMD2 (ENSFALG00000013836)	WIPI2 (ENSFALG00000028204)	SLC29A4 (ENSFALG00000013831)	TNRC18 (ENSFALG00000013830)	FBXL18 (ENSFALG00000013829)	ACTB (ENSFALG00000013828)	FSCN1 (ENSFALG00000013827)	RNF216 (ENSFALG00000013825)	ENSFALG00000014244	SMURF1 (ENSFALG00000013824) #13	KPNA7 (ENSFALG00000013820) #14	ARPC1A (ENSFALG00000013815) #17	PDAP1 (ENSFALG00000025682) #19	ENSFALG00000013804 #20	PTCD1 (ENSFALG00000013803) #21	CPSF4 (ENSFALG00000024016) #22	ATP5MF (ENSFALG00000013801) #23	KCNJ12 (ENSFALG00000027206)	MAP2K3 (ENSFALG00000013796)	NATD1 (ENSFALG00000023203)	TMEM11 (ENSFALG00000014240)	DHRS7B (ENSFALG00000013793)	USP22 (ENSFALG00000013792)	TNFRSF13B (ENSFALG00000027584)	MPRIP (ENSFALG00000013790)	PLD6 (ENSFALG00000027587)	FLCN (ENSFALG00000013783)	COPS3 (ENSFALG00000028737)	NT5M (ENSFALG00000013779)	ENSFALG00000026952	RASD1 (ENSFALG00000013776)
Flycatcher	MODERN SPECIES	8	FSCN2 (ENSFALG00000012651)	FAAP100 (ENSFALG00000012667)	ENSFALG00000028648	NPLOC4 (ENSFALG00000012683)	TSPAN10 (ENSFALG00000012693)	PDE6G (ENSFALG00000023175)	CCDC137 (ENSFALG00000012722)	GPRC5C (ENSFALG00000024995)	GPR142 (ENSFALG00000012741)	BTBD17 (ENSFALG00000012748)	ENSFALG00000012762	TTYH2 (ENSFALG00000012787)	RPL38 (ENSFALG00000023195)	SDK2 (ENSFALG00000012827)	ENSFALG00000026539	ENSFALG00000012906 #22	ENSFALG00000023260	ENSFALG00000012889	COG1 (ENSFALG00000012923)	SSTR2 (ENSFALG00000015032)	ENSFALG00000024962	ENSFALG00000024870	ENSFALG00000027042	ENSFALG00000028916	SOX9 (ENSFALG00000002572)	ENSFALG00000015208	MAP2K6 (ENSFALG00000002554)	ABCA5 (ENSFALG00000002529)	ENSFALG00000025138	ENSFALG00000002521	ENSFALG00000002512
Passeriformes_g	ANCESTRAL SPECIES	12	ENSGT00940000157972	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.o #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	22	RADIL (ENSGFOG00000009439)	MMD2 (ENSGFOG00000009429)	WIPI2 (ENSGFOG00000009409)	SLC29A4 (ENSGFOG00000009402)	FBXL18 (ENSGFOG00000009340)	ENSGFOG00000009329	FSCN1 (ENSGFOG00000009318)	RNF216 (ENSGFOG00000009308)	SMURF1 (ENSGFOG00000008634) #13	KPNA7 (ENSGFOG00000008572) #14	ARPC1B (ENSGFOG00000008561) #18	ARPC1A (ENSGFOG00000008549) #17	PDAP1 (ENSGFOG00000008542) #19	ENSGFOG00000008538 #20	PTCD1 (ENSGFOG00000008525) #21	CPSF4 (ENSGFOG00000008516) #22	ENSGFOG00000008510	ENSGFOG00000008509	MAP2K3 (ENSGFOG00000008502)	NATD1 (ENSGFOG00000008499)	TMEM11 (ENSGFOG00000008494)
Medium ground finch	MODERN SPECIES	339						ENSGFOG00000005551	FAAP100 (ENSGFOG00000005538)	NPLOC4 (ENSGFOG00000005530)	TSPAN10 (ENSGFOG00000005524)	PDE6G (ENSGFOG00000005519)	CCDC137 (ENSGFOG00000005514)	ENSGFOG00000005505	BTBD17 (ENSGFOG00000005497)	ENSGFOG00000005260	RPL38 (ENSGFOG00000005216)	ENSGFOG00000005091 #22	ENSGFOG00000005087	ENSGFOG00000005081	COG1 (ENSGFOG00000004968)	SSTR2 (ENSGFOG00000004957)	ENSGFOG00000004950	ENSGFOG00000004943	SLC39A11 (ENSGFOG00000004940)
Passeroidea	ANCESTRAL SPECIES	11	ENSGT00940000157972	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300.o #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00390000001055	ENSGT00510000046986 #23	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a
Common canary	MODERN SPECIES	17	MMD2 (ENSSCAG00000009114)	WIPI2 (ENSSCAG00000009100)	SLC29A4 (ENSSCAG00000009090)	ENSSCAG00000009080	FBXL18 (ENSSCAG00000009067)	ACTB (ENSSCAG00000009060)	FSCN1 (ENSSCAG00000009055)	RNF216 (ENSSCAG00000009048)	SMURF1 (ENSSCAG00000009043) #13	KPNA7 (ENSSCAG00000009027) #14	ARPC1A (ENSSCAG00000009009) #17	ARPC1B (ENSSCAG00000009006) #18	PDAP1 (ENSSCAG00000008999) #19	ENSSCAG00000008991 #20	PTCD1 (ENSSCAG00000008968) #21	CPSF4 (ENSSCAG00000008956) #22	ENSSCAG00000008947	ENSSCAG00000008942	MAP2K3 (ENSSCAG00000008937)	NATD1 (ENSSCAG00000008931)	TMEM11 (ENSSCAG00000008929)	DHRS7B (ENSSCAG00000008923)	USP22 (ENSSCAG00000008918)	TNFRSF13B (ENSSCAG00000008915)	MPRIP (ENSSCAG00000008877)	FLCN (ENSSCAG00000008865)	COPS3 (ENSSCAG00000008862)	NT5M (ENSSCAG00000008856)	MED9 (ENSSCAG00000008853)	RASD1 (ENSSCAG00000008850)	PEMT (ENSSCAG00000008844)
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	5	RADIL (ENSTGUG00000007743)	MMD2 (ENSTGUG00000029335)	WIPI2 (ENSTGUG00000007704)	SLC29A4 (ENSTGUG00000007691)	TNRC18 (ENSTGUG00000007679)	FBXL18 (ENSTGUG00000007676)	ACTB (ENSTGUG00000004138)	FSCN1 (ENSTGUG00000007668)	RNF216 (ENSTGUG00000007658)	SMURF1 (ENSTGUG00000007637) #13	KPNA7 (ENSTGUG00000007626) #14	ARPC1B (ENSTGUG00000007594) #18	PDAP1 (ENSTGUG00000007588) #19	BUD31 (ENSTGUG00000007584) #20	PTCD1 (ENSTGUG00000007563) #21	CPSF4 (ENSTGUG00000007552) #22	ATP5MF (ENSTGUG00000027774) #23	ENSTGUG00000029126	MAP2K3 (ENSTGUG00000007502)	TMEM11 (ENSTGUG00000007500)	DHRS7B (ENSTGUG00000007489)	USP22 (ENSTGUG00000007455)	TNFRSF13B (ENSTGUG00000007454)	MPRIP (ENSTGUG00000007423)	PLD6 (ENSTGUG00000025415)	FLCN (ENSTGUG00000007415)	COPS3 (ENSTGUG00000007378)	NT5M (ENSTGUG00000027577)	MED9 (ENSTGUG00000028820)	RASD1 (ENSTGUG00000007363)	RAI1 (ENSTGUG00000022081)
Zebra finch	MODERN SPECIES	9	BAHCC1 (ENSTGUG00000019540)	ACTG1 (ENSTGUG00000023431)	FSCN2 (ENSTGUG00000014701)	FAAP100 (ENSTGUG00000017013)	NPLOC4 (ENSTGUG00000002958)	TSPAN10 (ENSTGUG00000002947)	PDE6G (ENSTGUG00000023137)	CCDC137 (ENSTGUG00000002950)	GPRC5C (ENSTGUG00000002949)	GPR142 (ENSTGUG00000027421)	BTBD17 (ENSTGUG00000002937)	ENSTGUG00000021226	TTYH2 (ENSTGUG00000002939)	RPL38 (ENSTGUG00000028267)	CDC42EP4 (ENSTGUG00000022526)	ENSTGUG00000022100 #22	ENSTGUG00000002918	ENSTGUG00000019625	FAM104B (ENSTGUG00000002914)	COG1 (ENSTGUG00000002888)	SSTR2 (ENSTGUG00000025850)	SLC39A11 (ENSTGUG00000002885)	SOX9 (ENSTGUG00000002882)	KCNJ2 (ENSTGUG00000002878)	KCNJ16 (ENSTGUG00000023170)	MAP2K6 (ENSTGUG00000027718)
Lepidosauria	ANCESTRAL SPECIES	22	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a	ENSGT00390000017379	ENSGT00940000161274
Episquamata	ANCESTRAL SPECIES	8	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000167116	ENSGT00390000016895	ENSGT00940000155698.A	ENSGT00390000015750	ENSGT00940000155830	ENSGT00390000005666	ENSGT00940000157513
Laterata	ANCESTRAL SPECIES	22	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000156819.a.b	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000167116	ENSGT00390000016895	ENSGT00940000155698.A	ENSGT00390000015750	ENSGT00940000155830	ENSGT00390000005666	ENSGT00940000157513
Common wall lizard	MODERN SPECIES	5	BFAR (ENSPMRG00000023027)	ENSPMRG00000023022	CLCN7 (ENSPMRG00000023016)	ENSPMRG00000023011	PARN (ENSPMRG00000023002)	ENSPMRG00000022996	ECI1 (ENSPMRG00000022991)	ENSPMRG00000022975 #14	ENSPMRG00000022958 #14	ENSPMRG00000022939	ENSPMRG00000022932 #17	ARPC1B (ENSPMRG00000022924) #18	PDAP1 (ENSPMRG00000022918) #19	BUD31 (ENSPMRG00000022912) #20	PTCD1 (ENSPMRG00000022910) #21	CPSF4 (ENSPMRG00000022904) #22	ENSPMRG00000022899	ENSPMRG00000022896	MAP2K3 (ENSPMRG00000022885)	ENSPMRG00000022881	ENSPMRG00000022878	TMEM11 (ENSPMRG00000022875)	DHRS7B (ENSPMRG00000022868)	USP22 (ENSPMRG00000022858)	ENSPMRG00000022852	ENSPMRG00000022841	EEF2K (ENSPMRG00000022835)	POLR3E (ENSPMRG00000022828)	CDR2 (ENSPMRG00000022824)	ENSPMRG00000022821	IGSF6 (ENSPMRG00000022817)
Argentine black and white tegu	MODERN SPECIES	103	SLC29A4 (ENSSMRG00000020264)	TNRC18 (ENSSMRG00000020258)	FBXL18 (ENSSMRG00000020254)	ACTB (ENSSMRG00000020253)	FSCN1 (ENSSMRG00000020250)	RNF216 (ENSSMRG00000020248)	ENSSMRG00000020246	SMURF1 (ENSSMRG00000020244) #13	KPNA7 (ENSSMRG00000020136) #14	ENSSMRG00000020128	ARPC1A (ENSSMRG00000020127) #17	ARPC1B (ENSSMRG00000020124) #18	PDAP1 (ENSSMRG00000020122) #19	BUD31 (ENSSMRG00000020120) #20	PTCD1 (ENSSMRG00000020118) #21	CPSF4 (ENSSMRG00000020117) #22	ENSSMRG00000020116	ENSSMRG00000020115	MAP2K3 (ENSSMRG00000020114)	NATD1 (ENSSMRG00000020113)	TMEM11 (ENSSMRG00000020112)	DHRS7B (ENSSMRG00000020111)	USP22 (ENSSMRG00000020110)	ENSSMRG00000020109	ENSSMRG00000020107	COX19 (ENSSMRG00000020106)
Toxicofera	ANCESTRAL SPECIES	14	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT01030000234586.A.a.b	ENSGT00940000160875	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000167116	ENSGT00390000016895	ENSGT00940000155698.A	ENSGT00390000015750	ENSGT00940000155830	ENSGT00390000005666	ENSGT00940000157513
Elapidae	ANCESTRAL SPECIES	1	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b.cb	ENSGT00950000183157.a.a.b.bb	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT01030000234586.A.a.b	ENSGT00940000160875.a	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000167116	ENSGT00390000016895	ENSGT00940000155698.A	ENSGT00390000015750	ENSGT00940000155830	ENSGT00390000005666	ENSGT00940000157513
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b.cb	ENSGT00950000183157.a.a.b.bb	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT01030000234586.A.a.b	ENSGT00940000160875.a	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000167116	ENSGT00390000016895	ENSGT00940000155698.A	ENSGT00390000015750	ENSGT00940000155830	ENSGT00390000005666	ENSGT00940000157513
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00940000155537	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a.b	ENSGT00950000183157.a.a.b.cb	ENSGT00950000183157.a.a.b.bb	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT01030000234586.A.a.b	ENSGT00940000160875.a	ENSGT00390000014840.a	ENSGT00390000006617	ENSGT00940000158171	ENSGT00940000156623	ENSGT00390000013910	ENSGT00940000167116	ENSGT00390000016895	ENSGT00940000155698.A	ENSGT00390000015750	ENSGT00940000155830	ENSGT00390000005666	ENSGT00940000157513
Mainland tiger snake	MODERN SPECIES	241									FSCN1 (ENSNSUG00000014196)	RNF216 (ENSNSUG00000014123)	SMURF1 (ENSNSUG00000014122) #13	KPNA7 (ENSNSUG00000014121) #14	ENSNSUG00000014120	ARPC1A (ENSNSUG00000014119) #17	ARPC1B (ENSNSUG00000014118) #18	CPSF4 (ENSNSUG00000014117) #22	ENSNSUG00000014116	ENSNSUG00000014115	ENSNSUG00000014114	TMEM11 (ENSNSUG00000014113)	DHRS7B (ENSNSUG00000014112)	USP22 (ENSNSUG00000014111)	TNFRSF13B (ENSNSUG00000014110)	ENSNSUG00000014109	COX19 (ENSNSUG00000014108)	ADAP1 (ENSNSUG00000014107)	GET4 (ENSNSUG00000014106)	ENSNSUG00000014105	ENSNSUG00000014104	PRKAR1B (ENSNSUG00000014103)	PDGFA (ENSNSUG00000014102)
Eastern brown snake	MODERN SPECIES	24	SLC29A4 (ENSPTXG00000006654)	ENSPTXG00000006652	ENSPTXG00000006651	FBXL18 (ENSPTXG00000006650)	ACTB (ENSPTXG00000006649)	ENSPTXG00000006648	ENSPTXG00000006647	ENSPTXG00000006646	SMURF1 (ENSPTXG00000006645) #13	KPNA7 (ENSPTXG00000006643) #14	ENSPTXG00000006641	ARPC1A (ENSPTXG00000006639) #17	ARPC1B (ENSPTXG00000006637) #18	BUD31 (ENSPTXG00000006636) #20	PTCD1 (ENSPTXG00000006635) #21	CPSF4 (ENSPTXG00000006634) #22	ENSPTXG00000006632	ENSPTXG00000006631	ENSPTXG00000006628	NATD1 (ENSPTXG00000006626)	TMEM11 (ENSPTXG00000006624)	DHRS7B (ENSPTXG00000006623)	USP22 (ENSPTXG00000006622)	TNFRSF13B (ENSPTXG00000006619)	ENSPTXG00000006618	COX19 (ENSPTXG00000006615)	DNAAF5 (ENSPTXG00000006614)	ENSPTXG00000006613	PDGFA (ENSPTXG00000006612)	FAM20C (ENSPTXG00000006610)	TRRAP (ENSPTXG00000001456) #12
Blue-lipped sea krait	MODERN SPECIES	2816								SMURF1 (ENSLLTG00000001102) #13	KPNA7 (ENSLLTG00000001140) #14	ENSLLTG00000001193	ARPC1A (ENSLLTG00000001243) #17	ARPC1B (ENSLLTG00000001264) #18	PDAP1 (ENSLLTG00000001279) #19	BUD31 (ENSLLTG00000001290) #20	PTCD1 (ENSLLTG00000001300) #21	CPSF4 (ENSLLTG00000001315) #22
Indian cobra	MODERN SPECIES	15	SLC29A4 (ENSNNAG00000008031)	TNRC18 (ENSNNAG00000007985)	FBXL18 (ENSNNAG00000007962)	ACTB (ENSNNAG00000007940)	ENSNNAG00000016321	ENSNNAG00000016312	RNF216 (ENSNNAG00000016285)	SMURF1 (ENSNNAG00000016275) #13	KPNA7 (ENSNNAG00000016223) #14	ENSNNAG00000016182	ARPC1A (ENSNNAG00000016149) #17	ARPC1B (ENSNNAG00000016131) #18	PDAP1 (ENSNNAG00000016121) #19	BUD31 (ENSNNAG00000016111) #20	PTCD1 (ENSNNAG00000016099) #21	CPSF4 (ENSNNAG00000016093) #22	ENSNNAG00000016085	MAP2K3 (ENSNNAG00000016061)	NATD1 (ENSNNAG00000016053)	TMEM11 (ENSNNAG00000016047)	DHRS7B (ENSNNAG00000016027)	USP22 (ENSNNAG00000015976)	ENSNNAG00000015960	ENSNNAG00000015935	GET4 (ENSNNAG00000015914)	SUN1 (ENSNNAG00000015884)	DNAAF5 (ENSNNAG00000015816)	PRKAR1B (ENSNNAG00000015791)	PDGFA (ENSNNAG00000015774)	ENSNNAG00000015761	ENSNNAG00000015731 #12
Lizard	MODERN SPECIES	1327						FSCN1 (ENSACAG00000038737)	ENSACAG00000011713	ENSACAG00000026600	SMURF1 (ENSACAG00000011792) #13	ENSACAG00000011927	ARPC1A (ENSACAG00000012777) #17	ENSACAG00000038015 ##18	PDAP1 (ENSACAG00000038752) #19	BUD31 (ENSACAG00000012867) #20	PTCD1 (ENSACAG00000012871) #21	CPSF4 (ENSACAG00000042948) #22	ATP5MF (ENSACAG00000035548) #23
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1383	TNRC18 (ENSSPUG00000002773)	FBXL18 (ENSSPUG00000002840)	ACTB (ENSSPUG00000002859)	FSCN1 (ENSSPUG00000002887)	ENSSPUG00000002901	ENSSPUG00000002931	ENSSPUG00000002956	SMURF1 (ENSSPUG00000002982) #13	KPNA7 (ENSSPUG00000003169) #14	ENSSPUG00000003424	ARPC1A (ENSSPUG00000003489) #17	ARPC1B (ENSSPUG00000003501) #18	PDAP1 (ENSSPUG00000003518) #19	BUD31 (ENSSPUG00000003523) #20	PTCD1 (ENSSPUG00000003540) #21	CPSF4 (ENSSPUG00000003549) #22	ENSSPUG00000003555	ENSSPUG00000003583	MAP2K3 (ENSSPUG00000003597)	NATD1 (ENSSPUG00000003604)	TMEM11 (ENSSPUG00000003610)	DHRS7B (ENSSPUG00000003613)	USP22 (ENSSPUG00000003619)	ENSSPUG00000003638	MPRIP (ENSSPUG00000003643)	PLD6 (ENSSPUG00000003666)	FLCN (ENSSPUG00000003680)	COPS3 (ENSSPUG00000003686)	NT5M (ENSSPUG00000003697)	MED9 (ENSSPUG00000003713)	RASD1 (ENSSPUG00000003719)
tuatara	MODERN SPECIES	1429	FSCN2 (ENSSPUG00000014373)	FAAP100 (ENSSPUG00000014384)	NPLOC4 (ENSSPUG00000014398)	PDE6G (ENSSPUG00000014412)	OXLD1 (ENSSPUG00000014424)	ENSSPUG00000014428	GPRC5C (ENSSPUG00000014438)	GPR142 (ENSSPUG00000014444)	BTBD17 (ENSSPUG00000014452)	KIF19 (ENSSPUG00000014465)	ENSSPUG00000014525	ENSSPUG00000014667	ENSSPUG00000014674	RPL38 (ENSSPUG00000014689)	SDK2 (ENSSPUG00000014704)	ENSSPUG00000014803 #22	ENSSPUG00000014825 #23	FAM104B (ENSSPUG00000014868)	COG1 (ENSSPUG00000014882)	SSTR2 (ENSSPUG00000014904)	SLC39A11 (ENSSPUG00000014922)	SOX9 (ENSSPUG00000014960)
Anura	ANCESTRAL SPECIES	288											ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT01030000234586.A.a.b
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	10	FOXK1 (ENSLLEG00000016690)	ENSLLEG00000016662	ENSLLEG00000016640	SLC29A4 (ENSLLEG00000016445)	WIPI2 (ENSLLEG00000016159)	SMURF1 (ENSLLEG00000028621) #13	ENSLLEG00000028588	ZC3H15 (ENSLLEG00000028373)	KPNA7 (ENSLLEG00000028229) #14	ARPC1A (ENSLLEG00000028116) #17	ENSLLEG00000027985 #18	ENSLLEG00000027962	PDAP1 (ENSLLEG00000027924) #19	BUD31 (ENSLLEG00000027878) #20	PTCD1 (ENSLLEG00000027843) #21	CPSF4 (ENSLLEG00000027717) #22	ENSLLEG00000027669	ENSLLEG00000027622	ENSLLEG00000027610	TMEM11 (ENSLLEG00000027583)	NATD1 (ENSLLEG00000027541)	DHRS7B (ENSLLEG00000027436)	ENSLLEG00000027410	USP22 (ENSLLEG00000026537)	ENSLLEG00000026383	ENSLLEG00000026278	ENSLLEG00000026246	ENSLLEG00000026081	LUC7L (ENSLLEG00000025879)	ENSLLEG00000025820	ENSLLEG00000025768
Leishan spiny toad	MODERN SPECIES	3	TSPAN10 (ENSLLEG00000030419)	PDE6G (ENSLLEG00000030413)	ENSLLEG00000030405	CCDC137 (ENSLLEG00000030398)	ENSLLEG00000030395	ENSLLEG00000030390	GPR142 (ENSLLEG00000030384)	BTBD17 (ENSLLEG00000030376)	KIF19 (ENSLLEG00000030339)	ENSLLEG00000030307	TTYH2 (ENSLLEG00000030260)	RPL38 (ENSLLEG00000030244)	ENSLLEG00000030232	SDK2 (ENSLLEG00000029976)	ENSLLEG00000029918	ENSLLEG00000029901 #22	ENSLLEG00000029886	COG1 (ENSLLEG00000029799)	SSTR2 (ENSLLEG00000029782)	SLC39A11 (ENSLLEG00000029721)	ENSLLEG00000029704	ENSLLEG00000029692	ENSLLEG00000029684	SOX9 (ENSLLEG00000029660)	ENSLLEG00000029649	ENSLLEG00000029642	ENSLLEG00000029629	ENSLLEG00000029619	KCNJ2 (ENSLLEG00000029614)	KCNJ16 (ENSLLEG00000029603)	ENSLLEG00000029593
Frog	DUPLICATION
Frog	MODERN SPECIES	9	wdr75 (ENSXETG00000009873)	ENSXETG00000041263	slc40a1 (ENSXETG00000009874)	ENSXETG00000047419	ENSXETG00000040213	ENSXETG00000041077	asnsd1 (ENSXETG00000009878)	XB5749127 [provisional] (ENSXETG00000009881)	ankar (ENSXETG00000025109)	osgepl1 (ENSXETG00000009883)	ormdl1 (ENSXETG00000047362)	pms1 (ENSXETG00000009885)	mstn.2 (ENSXETG00000043668)	mstn.1 (ENSXETG00000048016)	ptcd1 (ENSXETG00000009891) #21	cpsf4 (ENSXETG00000009892) #22	kcnj12 (ENSXETG00000046715)	atp5mf (ENSXETG00000043524)	kpna7 (ENSXETG00000007497) #14	ENSXETG00000034868	ENSXETG00000041441	smurf1 (ENSXETG00000007498) #13	rnf216 (ENSXETG00000044685)	fscn1 (ENSXETG00000007501)	fbxl18 (ENSXETG00000007502)	ENSXETG00000047797	tnrc18 (ENSXETG00000007504)	actb (ENSXETG00000025116)	ENSXETG00000046251	hspe1 (ENSXETG00000007510)	hspd1 (ENSXETG00000007509)
Frog	MODERN SPECIES	1	mc3r (ENSXETG00000048875)	ENSXETG00000048914	abca9 (ENSXETG00000021974)	kif19 (ENSXETG00000012830)	dnai2 (ENSXETG00000012829)	ttyh2 (ENSXETG00000012828)	cbx8 (ENSXETG00000041757)	cbx4 (ENSXETG00000035662)	ENSXETG00000049048	tbc1d16 (ENSXETG00000012824)	ENSXETG00000004200	rpl38 (ENSXETG00000025319)	ENSXETG00000036760	sdk2 (ENSXETG00000004643)	cdc42ep4 (ENSXETG00000004642)	cpsf4l (ENSXETG00000004641) #22	c17orf80 (ENSXETG00000035627)	tspan10 (ENSXETG00000033433)	PDE6G (ENSXETG00000040009)	pde6g (ENSXETG00000042418)	ccdc137 (ENSXETG00000033252)	atp6v0a1 (ENSXETG00000004635)	ENSXETG00000037864	ENSXETG00000041877	etv4 (ENSXETG00000030031)	dcxr (ENSXETG00000004630)	rac3 (ENSXETG00000033871)	gpr142 (ENSXETG00000031481)	btbd17 (ENSXETG00000039335)	abca5 (ENSXETG00000031795)	ENSXETG00000042830
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	345	ENSLACG00000017094	ENSLACG00000016952	FSCN1 (ENSLACG00000016447)	RNF216 (ENSLACG00000015715)	ENSLACG00000015668	ENSLACG00000015251	ENSLACG00000014575	SMURF1 (ENSLACG00000014191) #13	KPNA7 (ENSLACG00000013531) #14	ENSLACG00000012445	ARPC1A (ENSLACG00000012158) #17	ARPC1B (ENSLACG00000011837) #18	PDAP1 (ENSLACG00000011502) #19	BUD31 (ENSLACG00000011373) #20	PTCD1 (ENSLACG00000011172) #21	CPSF4 (ENSLACG00000010938) #22	atp5mf (ENSLACG00000010797)	ENSLACG00000005568
Coelacanth	MODERN SPECIES	242	RNF213 (ENSLACG00000016942)	ENSLACG00000017145	TSPAN10 (ENSLACG00000017189)	PDE6G (ENSLACG00000017204)	OXLD1 (ENSLACG00000017238)	CCDC137 (ENSLACG00000017254)	gprc5c (ENSLACG00000017372)	GPR142 (ENSLACG00000017416)	BTBD17 (ENSLACG00000017493)	KIF19 (ENSLACG00000017516)	DNAI2 (ENSLACG00000017644)	TTYH2 (ENSLACG00000017674)	ENSLACG00000017820	SDK2 (ENSLACG00000018359)	ENSLACG00000018460	ENSLACG00000018470 #22	ENSLACG00000018480	FAM104B (ENSLACG00000018485)	COG1 (ENSLACG00000018489)	SSTR2 (ENSLACG00000018502)	ENSLACG00000018532	SOX9 (ENSLACG00000018754)
Actinopterygii	ANCESTRAL SPECIES	138	ENSGT00390000001979	ENSGT00940000153340.A	ENSGT00940000155335	ENSGT00940000167865	ENSGT00930000151032.A	ENSGT00390000009298	ENSGT00950000182906.a.a.a	ENSGT00940000156643	ENSGT00390000013127.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.b	ENSGT00950000182960.a.a.a.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000165400	ENSGT00940000158690 #13	ENSGT01050000244891.B #14
Neopterygii	ANCESTRAL SPECIES	6	ENSGT00390000001979	ENSGT00940000153340.A	ENSGT00940000167865	ENSGT00930000151032.A	ENSGT00390000009298	ENSGT00950000182906.a.a.a	ENSGT00940000156643	ENSGT00390000013127.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00400000022459	ENSGT00390000002762.a.b	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.b	ENSGT00950000182960.a.a.a.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000165400	ENSGT00940000158690 #13	ENSGT01050000244891.B #14	ENSGT00940000158127	ENSGT00390000002752
Spotted gar	MODERN SPECIES	651	hagh (ENSLOCG00000005110)	fahd1 (ENSLOCG00000005085)	MEIOB (ENSLOCG00000005071)	ENSLOCG00000005049	MYO15A (ENSLOCG00000005025)	alkbh5 (ENSLOCG00000005006)	LLGL1 (ENSLOCG00000004976)	flii (ENSLOCG00000004957)	TOP3A (ENSLOCG00000004935)	smcr8a (ENSLOCG00000004927)	ENSLOCG00000004911	shmt1 (ENSLOCG00000004890)	pdap1b (ENSLOCG00000004873) #19	bud31 (ENSLOCG00000004858) #20	PTCD1 (ENSLOCG00000004833) #21	cpsf4 (ENSLOCG00000004814) #22	atp5mf (ENSLOCG00000004800)	slc29a4a (ENSLOCG00000004787)	TNRC18 (ENSLOCG00000004756)	fbxl18 (ENSLOCG00000004725)	actb1 (ENSLOCG00000004713)	fscn1a (ENSLOCG00000004693)	RNF216 (ENSLOCG00000004666)	ENSLOCG00000018103	ENSLOCG00000018102	smurf1 (ENSLOCG00000004637) #13	kpna7 (ENSLOCG00000004619) #14	ENSLOCG00000004563	arpc1a (ENSLOCG00000004549) #17	arpc1b (ENSLOCG00000004536) #18	wipi2 (ENSLOCG00000004511)
Osteoglossocephalai	ANCESTRAL SPECIES	186	ENSGT00940000153340.A	ENSGT00940000155335	ENSGT00940000167865	ENSGT00930000151032.A	ENSGT00390000009298	ENSGT00950000182906.a.a.a	ENSGT00940000156643	ENSGT00390000013127.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00400000022459	ENSGT00390000002762.a.b	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.b	ENSGT00950000182960.a.a.a.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13
Osteoglossiformes	ANCESTRAL SPECIES	99						ENSGT00940000156666.k	ENSGT00390000014178	ENSGT00950000182935.B.b.d.d	ENSGT00930000151032.A	ENSGT00390000009298.p	ENSGT00950000182906.a.a.a.x	ENSGT00940000156643	ENSGT00390000013127.b	ENSGT00390000010052.a.j	ENSGT00940000153974.A #21	ENSGT00940000155520 #22	ENSGT00940000155366.a.s.b	ENSGT00390000009447.l	ENSGT00390000016020	ENSGT00940000157803	ENSGT00390000005386	ENSGT00940000161162	ENSGT00530000063205.A	ENSGT00940000157930	ENSGT00390000002365	ENSGT00940000156947.i	ENSGT00390000008664	ENSGT00940000160832	ENSGT00940000164817.c	ENSGT00940000153578.B.b	ENSGT00940000158857
Asian bonytongue	MODERN SPECIES	12	CASKIN1 (ENSSFOG00015028724)	ENSSFOG00015008450	FAM83G (ENSSFOG00015028131)	SLC5A10 (ENSSFOG00015008408)	ENSSFOG00015008374	CACNA1H (ENSSFOG00015008288)	znf598 (ENSSFOG00015008201)	SYNGR3 (ENSSFOG00015008170)	ENSSFOG00015008163	ALKBH5 (ENSSFOG00015008148)	LLGL1 (ENSSFOG00015008098)	flii (ENSSFOG00015007983)	mief2 (ENSSFOG00015007961)	SMCR8 (ENSSFOG00015007950)	PTCD1 (ENSSFOG00015007909) #21	cpsf4 (ENSSFOG00015007883) #22	LITAF (ENSSFOG00015007866)	litaf (ENSSFOG00015032570)	snn (ENSSFOG00015007840)	ENSSFOG00015007823	txndc11 (ENSSFOG00015007664)	ENSSFOG00015030839	BFAR (ENSSFOG00015007605)	REXO5 (ENSSFOG00015007581)	ERI2 (ENSSFOG00015007549)	acsm3 (ENSSFOG00015026229)	thumpd1 (ENSSFOG00015025634)	AXIN1 (ENSSFOG00015007478)	GTF3C1 (ENSSFOG00015007081)	SEC14L5 (ENSSFOG00015006998)	ENSSFOG00015032703
P. kingsleyae	MODERN SPECIES	145	PRPSAP2 (ENSPKIG00000013462)	SLC5A10 (ENSPKIG00000013502)	FAM83G (ENSPKIG00000013549)	grapa (ENSPKIG00000013572)	ENSPKIG00000013596	CACNA1H (ENSPKIG00000013659)	znf598 (ENSPKIG00000013745)	SYNGR3 (ENSPKIG00000013787)	ENSPKIG00000013806	ALKBH5 (ENSPKIG00000013829)	LLGL1 (ENSPKIG00000013903)	flii (ENSPKIG00000014061)	mief2 (ENSPKIG00000014167)	SMCR8 (ENSPKIG00000014180)	PTCD1 (ENSPKIG00000014215) #21	cpsf4 (ENSPKIG00000014278) #22	ENSPKIG00000014307	txndc11 (ENSPKIG00000014319)	snn (ENSPKIG00000014338)	ENSPKIG00000014342	BFAR (ENSPKIG00000014363)	REXO5 (ENSPKIG00000014406)	ENSPKIG00000014436	acsm3 (ENSPKIG00000014461)	thumpd1 (ENSPKIG00000014491)	AXIN1 (ENSPKIG00000014517)	GTF3C1 (ENSPKIG00000014570)	ENSPKIG00000014651	ENSPKIG00000014732
Clupeocephala	ANCESTRAL SPECIES	71	ENSGT00390000004169	ENSGT00950000182961.a.a.d	ENSGT00950000182983.A.a.a.a	ENSGT00940000157836.a	ENSGT01030000234586.B.a.a.b	ENSGT01080000257365.a.c	ENSGT00920000149199	ENSGT00390000004428.a.a	ENSGT00390000007463	ENSGT00940000161116.w.a	ENSGT00390000017548.b.a	ENSGT00940000156691	ENSGT00390000003070.a.a	ENSGT01090000260240	ENSGT00940000160116.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.b	ENSGT00950000183157.a.a.a.a	ENSGT00390000011615.A.a	ENSGT00940000159620.b.b	ENSGT00940000157519.b.b	ENSGT00940000157948.D	ENSGT00940000158348.e.b	ENSGT00950000182983.A.a.b	ENSGT00390000012872.a	ENSGT00950000182935.B.a.d	ENSGT01050000244894.b.b.d.b
Otomorpha	ANCESTRAL SPECIES	12										ENSGT00940000156643	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b.o	ENSGT00940000157099	ENSGT00950000182960.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000159507	ENSGT00950000182958.b.a.b ##35
Otophysi	ANCESTRAL SPECIES	34	ENSGT00390000015495	ENSGT00950000182906.a.a.a	ENSGT00930000151032.A.f	ENSGT00940000167865	ENSGT00940000155335.t	ENSGT00940000153340.A	ENSGT00390000001979	ENSGT00950000182935.B.b.d.a	ENSGT00390000014178	ENSGT00940000156643	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b.o	ENSGT00940000157099	ENSGT00950000182960.a.a.b.d.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000159507	ENSGT00950000182958.b.a.b ##35
Characiphysae	ANCESTRAL SPECIES	10	ENSGT00940000165827	ENSGT00390000015495	ENSGT00950000182906.a.a.a	ENSGT00930000151032.A.f	ENSGT00940000155335.t	ENSGT00940000153340.A	ENSGT00390000001979	ENSGT00950000182935.B.b.d.a	ENSGT00390000014178	ENSGT00940000156643	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b.o	ENSGT00940000157099	ENSGT00950000182960.a.a.b.d.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000159507
Channel catfish	MODERN SPECIES	16	CCDC97 (ENSIPUG00000016356)	llgl1 (ENSIPUG00000016392)	ENSIPUG00000016510	ENSIPUG00000016542	DRG2 (ENSIPUG00000016593)	gfer (ENSIPUG00000016666)	SYNGR3 (ENSIPUG00000016672)	znf598 (ENSIPUG00000016692)	mgmt (ENSIPUG00000016768)	flii (ENSIPUG00000016799)	top3a (ENSIPUG00000016972)	smcr8 (ENSIPUG00000017027)	shmt1 (ENSIPUG00000017041)	pdap1 (ENSIPUG00000017111) #19	bud31 (ENSIPUG00000017126) #20	cpsf4 (ENSIPUG00000017147) #22	atp5mf (ENSIPUG00000017219)	slc29a4 (ENSIPUG00000017239)	tnrc18 (ENSIPUG00000017314)	twf1b (ENSIPUG00000017458)	actb (ENSIPUG00000017486)	fscn1 (ENSIPUG00000017523)	ENSIPUG00000017537	ENSIPUG00000017573	smurf1 (ENSIPUG00000017588) #13	ENSIPUG00000017631	arpc1a (ENSIPUG00000017706) #17	ARPC1B (ENSIPUG00000017735) #18	WIPI2 (ENSIPUG00000017786)	mmd2 (ENSIPUG00000017843)	ap5z1 (ENSIPUG00000017877)
Characiphysae_b	ANCESTRAL SPECIES	1	ENSGT00940000165827	ENSGT00390000015495	ENSGT00950000182906.a.a.a	ENSGT00930000151032.A.f	ENSGT00940000167865	ENSGT00940000153340.A	ENSGT00390000001979	ENSGT00950000182935.B.b.d.a	ENSGT00390000014178	ENSGT00940000156643	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b.o	ENSGT00940000157099	ENSGT00950000182960.a.a.b.d.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT00940000166074.B	ENSGT00390000002752	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00940000155537	ENSGT00940000157972.c
Characoidei	ANCESTRAL SPECIES	3	ENSGT00940000165827	ENSGT00390000015495	ENSGT00950000182906.a.a.a	ENSGT00930000151032.A.f	ENSGT00940000167865	ENSGT00940000153340.A	ENSGT00390000001979	ENSGT00950000182935.B.b.d.a	ENSGT00390000014178	ENSGT00940000156643	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b.o	ENSGT00940000157099	ENSGT00950000182960.a.a.b.d.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690 #13	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000159507
Red-bellied piranha	MODERN SPECIES	89	ENSPNAG00000023474	CCDC97 (ENSPNAG00000005883)	llgl1 (ENSPNAG00000023344)	ENSPNAG00000006651	ENSPNAG00000003759	drg2 (ENSPNAG00000023202)	gfer (ENSPNAG00000023159)	syngr3a (ENSPNAG00000023146)	znf598 (ENSPNAG00000023121)	flii (ENSPNAG00000005190)	TOP3A (ENSPNAG00000022998)	smcr8a (ENSPNAG00000022908)	shmt1 (ENSPNAG00000022895)	pdap1b (ENSPNAG00000022846) #19	bud31 (ENSPNAG00000022817) #20	cpsf4 (ENSPNAG00000003736) #22	atp5mf (ENSPNAG00000022775)	slc29a4a (ENSPNAG00000022751)	TNRC18 (ENSPNAG00000022709)	actb2 (ENSPNAG00000022673)	fscn1a (ENSPNAG00000022662)	RNF216 (ENSPNAG00000022632)	ENSPNAG00000003722	smurf1 (ENSPNAG00000022618) #13	ENSPNAG00000022571	arpc1a (ENSPNAG00000022456) #17	arpc1b (ENSPNAG00000022408) #18	wipi2 (ENSPNAG00000022384)	mmd2a (ENSPNAG00000022319)	ap5z1 (ENSPNAG00000022269)	foxk1 (ENSPNAG00000022234)
Mexicana tetra	MODERN SPECIES	15	CCDC97 (ENSAMXG00000010284)	llgl1 (ENSAMXG00000010281)	ENSAMXG00000029529	ENSAMXG00000037398	ENSAMXG00000038251	drg2 (ENSAMXG00000010228)	gfer (ENSAMXG00000010225)	syngr3a (ENSAMXG00000043644)	znf598 (ENSAMXG00000010217)	flii (ENSAMXG00000010194)	TOP3A (ENSAMXG00000010181)	smcr8a (ENSAMXG00000041003)	shmt1 (ENSAMXG00000010173)	pdap1b (ENSAMXG00000032699) #19	bud31 (ENSAMXG00000010164) #20	cpsf4 (ENSAMXG00000031647) #22	atp5mf (ENSAMXG00000035415)	slc29a4a (ENSAMXG00000010125)	TNRC18 (ENSAMXG00000010115)	actb2 (ENSAMXG00000037226)	fscn1a (ENSAMXG00000031207)	RNF216 (ENSAMXG00000010094)	ENSAMXG00000025542	ENSAMXG00000042959	psmg3 (ENSAMXG00000030051)	tmem184a (ENSAMXG00000039767)	mafk (ENSAMXG00000001047)	INTS1 (ENSAMXG00000001060)	ENSAMXG00000030924	micall2a (ENSAMXG00000003783)	smurf1 (ENSAMXG00000010087) #13
Electric eel	MODERN SPECIES	413	EPN2 (ENSEEEG00000005562)	b9d1 (ENSEEEG00000005553)	ENSEEEG00000005500	CCDC97 (ENSEEEG00000005491)	LLGL1 (ENSEEEG00000005453)	ENSEEEG00000005439	drg2 (ENSEEEG00000005422)	gfer (ENSEEEG00000005416)	syngr3a (ENSEEEG00000005414)	znf598 (ENSEEEG00000005413)	flii (ENSEEEG00000005410)	TOP3A (ENSEEEG00000005375)	smcr8a (ENSEEEG00000005371)	shmt1 (ENSEEEG00000005277)	pdap1b (ENSEEEG00000005272) #19	cpsf4 (ENSEEEG00000005271) #22	atp5mf (ENSEEEG00000005269)	bud31 (ENSEEEG00000005268) #20
Cyprinoidei	ANCESTRAL SPECIES	56	ENSGT00940000160079	ENSGT00940000165827	ENSGT00390000015495	ENSGT00950000182906.a.a.a	ENSGT00940000155335.t	ENSGT00940000153340.A	ENSGT00390000001979	ENSGT00950000182935.B.b.d.a	ENSGT00390000014178	ENSGT00940000156643	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b.o	ENSGT00940000157099	ENSGT00950000182960.a.a.b.d.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000158690.f #13	ENSGT01030000234534.C	ENSGT00940000158690.e #13	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000159507
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	639					ENSGT00940000155335.t.b	ENSGT00940000153340.A.k.b	ENSGT00390000001979.f	ENSGT00950000182935.B.b.d.a.b	ENSGT00390000014178.b	ENSGT00940000156643.b	ENSGT00940000156701.b	ENSGT00390000010052.a.b	ENSGT00390000002762.a.b.n	ENSGT00390000018509.a.q #19	ENSGT00390000014300.n #20	ENSGT00940000155520.vb #22	ENSGT00940000165557.h	ENSGT00950000182898.a.b.o.a	ENSGT00940000157099.s
Cyprininae_a	ANCESTRAL SPECIES	307					ENSGT00940000155335.t.b	ENSGT00940000153340.A.k.b	ENSGT00390000001979.f	ENSGT00950000182935.B.b.d.a.b	ENSGT00390000014178.b	ENSGT00940000156643.b	ENSGT00940000156701.b	ENSGT00390000010052.a.b	ENSGT00390000002762.a.b.n	ENSGT00390000018509.a.q #19	ENSGT00390000014300.n #20	ENSGT00940000155520.vb #22	ENSGT00940000165557.h	ENSGT00950000182898.a.b.o.a	ENSGT00940000157099.s	ENSGT00950000182960.a.a.b.d.a.b	ENSGT00950000183157.a.a.b.o.a	ENSGT00510000048032.l	ENSGT00940000158690.e.b #13	ENSGT00950000183183.b.a.k #17	ENSGT00950000183183.b.b.d #18	ENSGT00940000155537.h	ENSGT00940000157972.c.a	ENSGT00390000017592.j	ENSGT00940000159507.c	ENSGT00950000182958.b.a.b.c.a ##35	ENSGT00940000157747.y.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	3971																cpsf4 (ENSSGRG00000003180) #22	atp5mf (ENSSGRG00000003846)
Golden-line barbel	MODERN SPECIES	8	EPN2 (ENSSGRG00000045777)	b9d1 (ENSSGRG00000045780)	ENSSGRG00000045781	CCDC97 (ENSSGRG00000045784)	LLGL1 (ENSSGRG00000045796)	MYO15A (ENSSGRG00000045988)	drg2 (ENSSGRG00000045994)	gfer (ENSSGRG00000046156)	syngr3a (ENSSGRG00000046157)	znf598 (ENSSGRG00000046158)	flii (ENSSGRG00000046171)	smcr8a (ENSSGRG00000046490)	shmt1 (ENSSGRG00000046492)	pdap1b (ENSSGRG00000046617) #19	bud31 (ENSSGRG00000046618) #20	cpsf4 (ENSSGRG00000046623) #22	atp5mf (ENSSGRG00000046674)	ENSSGRG00000046677	actb2 (ENSSGRG00000000280)	fscn1a (ENSSGRG00000000599)	ENSSGRG00000000601	ENSSGRG00000000609	smurf1 (ENSSGRG00000000663) #13	arpc1a (ENSSGRG00000002198) #17	arpc1b (ENSSGRG00000002202) #18	wipi2 (ENSSGRG00000002238)	mmd2a (ENSSGRG00000002379)	ap5z1 (ENSSGRG00000002381)	foxk1 (ENSSGRG00000002384)	cyp3c4 (ENSSGRG00000002398) ##35	ENSSGRG00000004847 ##35
Common carp reference	MODERN SPECIES	3	grapa (ENSCCRG00000038948)	EPN2 (ENSCCRG00000003181)	b9d1 (ENSCCRG00000080593)	ENSCCRG00000005748	ENSCCRG00000066485	llgl1 (ENSCCRG00000003326)	drg2 (ENSCCRG00000058584)	syngr3a (ENSCCRG00000055434)	znf598 (ENSCCRG00000061252)	flii (ENSCCRG00000065292)	smcr8a (ENSCCRG00000012627)	TOP3A (ENSCCRG00000012638)	shmt1 (ENSCCRG00000012623)	pdap1b (ENSCCRG00000068497) #19	bud31 (ENSCCRG00000073893) #20	cpsf4 (ENSCCRG00000012607) #22	atp5mf (ENSCCRG00000012602)	slc29a4a (ENSCCRG00000029725)	actb2 (ENSCCRG00000007233)	ENSCCRG00000005914	fscn1a (ENSCCRG00000055127)	RNF216 (ENSCCRG00000001719)	smurf1 (ENSCCRG00000007960) #13	ENSCCRG00000015987	arpc1a (ENSCCRG00000007863) #17	arpc1b (ENSCCRG00000007822) #18	wipi2 (ENSCCRG00000007681)	mmd2a (ENSCCRG00000007649)	ap5z1 (ENSCCRG00000006288)	foxk1 (ENSCCRG00000006272)	ENSCCRG00000055534 ##35
Goldfish	MODERN SPECIES	22	ENSCARG00000041271	nr5a5 (ENSCARG00000041189)	ENSCARG00000041177	shfl (ENSCARG00000041160)	ENSCARG00000041147	notch3 (ENSCARG00000039235)	drg2 (ENSCARG00000039005)	gfer (ENSCARG00000038975)	syngr3a (ENSCARG00000038959)	znf598 (ENSCARG00000038905)	flii (ENSCARG00000037021)	smcr8a (ENSCARG00000036968)	shmt1 (ENSCARG00000036814)	pdap1b (ENSCARG00000036792) #19	bud31 (ENSCARG00000036766) #20	cpsf4 (ENSCARG00000036711) #22	atp5mf (ENSCARG00000036687)	slc29a4a (ENSCARG00000036666)	ENSCARG00000036453	actb2 (ENSCARG00000036365)	ENSCARG00000036352	ENSCARG00000036338	ENSCARG00000036273	qtrt1 (ENSCARG00000036241)	dnm2a (ENSCARG00000036063)	tmed1a (ENSCARG00000035920)	ENSCARG00000035903	tnfsf18 (ENSCARG00000035897)	men1 (ENSCARG00000035872)	rtn3 (ENSCARG00000035850)	ecsit (ENSCARG00000035833)
Cyprininae	ANCESTRAL SPECIES	182	ENSGT00940000160079.f	ENSGT00940000165827.r	ENSGT00390000015495	ENSGT00950000182906.a.a.a.e	ENSGT00940000155335.t.a	ENSGT00940000153340.A.l	ENSGT00390000001979.e.a	ENSGT00950000182935.B.b.d.a.a	ENSGT00390000014178.a	ENSGT00940000156643.a	ENSGT00940000156701.a	ENSGT00390000010052.a.a	ENSGT00390000002762.a.b.m	ENSGT00390000018509.a.r #19	ENSGT00390000014300.m #20	ENSGT00940000155520.wb #22	ENSGT00940000165557.i	ENSGT00950000182898.a.b.o.b	ENSGT00940000157099.t	ENSGT00950000182960.a.a.b.d.a.b	ENSGT00950000183157.a.a.b.o.b.a	ENSGT00510000048032.k	ENSGT00940000158690.e.a #13	ENSGT00950000183183.b.a.l #17	ENSGT00950000183183.b.b.c #18	ENSGT00940000155537.g	ENSGT00940000157972.c.b	ENSGT00390000017592.i	ENSGT00940000159507.d	ENSGT00950000182958.b.a.b.c.b.a ##35	ENSGT00940000157747.y.b
Goldfish	MODERN SPECIES	2030	b9d1 (ENSCARG00000065062)	ENSCARG00000063749	CCDC97 (ENSCARG00000063630)	llgl1 (ENSCARG00000061775)	MYO15A (ENSCARG00000061190)	drg2 (ENSCARG00000060913)	gfer (ENSCARG00000060873)	syngr3a (ENSCARG00000060864)	znf598 (ENSCARG00000060853)	flii (ENSCARG00000058689)	TOP3A (ENSCARG00000054697)	smcr8a (ENSCARG00000054542)	shmt1 (ENSCARG00000054203)	pdap1b (ENSCARG00000054169) #19	bud31 (ENSCARG00000054131) #20	cpsf4 (ENSCARG00000054014) #22	atp5mf (ENSCARG00000053922)	slc29a4a (ENSCARG00000053894)	TNRC18 (ENSCARG00000053853)	actb2 (ENSCARG00000053829)	fscn1a (ENSCARG00000053801)	ENSCARG00000053686	ENSCARG00000053675	smurf1 (ENSCARG00000051196) #13
Cyprininae_a	ANCESTRAL SPECIES	21	ENSGT00940000160079.e.b	ENSGT00940000165827.q	ENSGT00390000015495.c	ENSGT00950000182906.a.a.a.e	ENSGT00940000155335.t.a	ENSGT00940000153340.A.l	ENSGT00390000001979.e.a	ENSGT00950000182935.B.b.d.a.a	ENSGT00390000014178.a	ENSGT00940000156643.a	ENSGT00940000156701.a	ENSGT00390000010052.a.a	ENSGT00390000002762.a.b.m	ENSGT00390000018509.a.r #19	ENSGT00390000014300.m #20	ENSGT00940000155520.wb #22	ENSGT00940000165557.i	ENSGT00950000182898.a.b.o.b	ENSGT00940000157099.t	ENSGT00950000182960.a.a.a.b	ENSGT00950000183157.a.a.b.o.b.a	ENSGT00510000048032.k	ENSGT01030000234534.C	ENSGT00940000158690.e.a #13	ENSGT00950000183183.b.b.c #18	ENSGT00940000155537.g	ENSGT00940000157972.c.b	ENSGT00390000017592.i	ENSGT00940000159507.d	ENSGT00950000182958.b.a.b.c.b.a ##35	ENSGT00940000157747.y.b
Common carp reference	MODERN SPECIES	1	ENSCCRG00000082764	ENSCCRG00000002918	llgl1 (ENSCCRG00000002843)	ENSCCRG00000038584	drg2 (ENSCCRG00000038573)	gfer (ENSCCRG00000071490)	syngr3a (ENSCCRG00000038566)	znf598 (ENSCCRG00000042440)	ENSCCRG00000069280	flii (ENSCCRG00000059665)	TOP3A (ENSCCRG00000006080)	smcr8a (ENSCCRG00000077891)	shmt1 (ENSCCRG00000056003)	pdap1b (ENSCCRG00000006016) #19	bud31 (ENSCCRG00000006005) #20	cpsf4 (ENSCCRG00000005959) #22	atp5mf (ENSCCRG00000031258)	slc29a4a (ENSCCRG00000035546)	ENSCCRG00000007286	actb2 (ENSCCRG00000001748)	fscn1a (ENSCCRG00000001737)	RNF216 (ENSCCRG00000006398)	ENSCCRG00000013477	smurf1 (ENSCCRG00000001383) #13	arpc1b (ENSCCRG00000080423) #18	wipi2 (ENSCCRG00000075990)	mmd2a (ENSCCRG00000057213)	ap5z1 (ENSCCRG00000058240)	cyp3c4 (ENSCCRG00000030874) ##35	cyp3c4 (ENSCCRG00000047631) ##35	SDK1 (ENSCCRG00000055349)
Zebrafish	MODERN SPECIES	18	b9d1 (ENSDARG00000011727)	ENSDARG00000060496	CCDC97 (ENSDARG00000074703)	llgl1 (ENSDARG00000009693)	ENSDARG00000075292	drg2 (ENSDARG00000006642)	gfer (ENSDARG00000070061)	syngr3a (ENSDARG00000014871)	znf598 (ENSDARG00000014945)	flii (ENSDARG00000059701)	TOP3A (ENSDARG00000052827)	smcr8a (ENSDARG00000052818)	shmt1 (ENSDARG00000052816)	pdap1b (ENSDARG00000002967) #19	bud31 (ENSDARG00000017084) #20	cpsf4 (ENSDARG00000020217) #22	ENSDARG00000116912	atp5mf (ENSDARG00000037867)	slc29a4a (ENSDARG00000059690)	TNRC18 (ENSDARG00000077052)	actb2 (ENSDARG00000037870)	fscn1a (ENSDARG00000059680)	RNF216 (ENSDARG00000087893)	ENSDARG00000109826 #13	ENSDARG00000096870	smurf1 (ENSDARG00000016086) #13	arpc1a (ENSDARG00000008383) #17	arpc1b (ENSDARG00000027063) #18	wipi2 (ENSDARG00000037871)	mmd2a (ENSDARG00000087446)	ap5z1 (ENSDARG00000078111)
Clupeiformes	ANCESTRAL SPECIES	119										ENSGT00940000156643	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b.o	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000166074.B	ENSGT00390000002752	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a #17	ENSGT00950000183183.b.b #18	ENSGT00940000155537	ENSGT00940000157972.c
Denticle herring	MODERN SPECIES	17	CASKIN1 (ENSDCDG00000004398)	ENSDCDG00000004430	traf7 (ENSDCDG00000004440)	gng13b (ENSDCDG00000004500)	dctn5 (ENSDCDG00000004502)	rpusd1 (ENSDCDG00000004505)	ndufab1b (ENSDCDG00000004506)	TNRC6A (ENSDCDG00000004509)	rbbp6 (ENSDCDG00000004539)	flii (ENSDCDG00000004586)	TOP3A (ENSDCDG00000005199)	smcr8a (ENSDCDG00000005352)	shmt1 (ENSDCDG00000005364)	pdap1b (ENSDCDG00000007605) #19	bud31 (ENSDCDG00000007610) #20	cpsf4 (ENSDCDG00000007624) #22	atp5mf (ENSDCDG00000007629)	slc29a4a (ENSDCDG00000007633)	TNRC18 (ENSDCDG00000007644)	actb2 (ENSDCDG00000007657)	fscn1a (ENSDCDG00000007707)	ENSDCDG00000007718	ENSDCDG00000007733	smurf1 (ENSDCDG00000007740) #13	ENSDCDG00000007758	arpc1a (ENSDCDG00000007835) #17	arpc1b (ENSDCDG00000007870) #18	wipi2 (ENSDCDG00000008004)	mmd2a (ENSDCDG00000008292)	ap5z1 (ENSDCDG00000008330)	foxk1 (ENSDCDG00000008373)
Euteleosteomorpha	ANCESTRAL SPECIES	120	ENSGT00390000015495	ENSGT00390000014178	ENSGT00950000182935.B.b.d.a	ENSGT00390000001979	ENSGT00940000153340.A	ENSGT00940000155335.s.b	ENSGT00940000167865	ENSGT00930000151032.A.c.b	ENSGT00950000182906.a.a.a	ENSGT00940000156643	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000018509.a #19	ENSGT00390000014300 #20	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b
Protacanthopterygii	ANCESTRAL SPECIES	154	ENSGT00390000015495	ENSGT00390000014178	ENSGT00950000182935.B.b.d.a	ENSGT00390000001979	ENSGT00940000153340.A	ENSGT00940000155335.s.b	ENSGT00930000151032.A.c.b	ENSGT00950000182906.a.a.a	ENSGT00940000156643.e	ENSGT00940000156643.f	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b
Northern pike	MODERN SPECIES	10	SYT17 (ENSELUG00000012167)	clec19a (ENSELUG00000012124)	smg1 (ENSELUG00000012072)	arl6ip1 (ENSELUG00000011980)	ENSELUG00000029264	ENSELUG00000029433	ENSELUG00000011939	shmt1 (ENSELUG00000011924)	smcr8a (ENSELUG00000011865)	TOP3A (ENSELUG00000011817)	flii (ENSELUG00000011761)	ENSELUG00000011657	ENSELUG00000011716	bud31 (ENSELUG00000011629) #20	pdap1b (ENSELUG00000011601) #19	cpsf4 (ENSELUG00000011481) #22	atp5mf (ENSELUG00000011473)	slc29a4a (ENSELUG00000011467)	ENSELUG00000011437	ACTB (ENSELUG00000011375)	FSCN1 (ENSELUG00000011363)	RNF216 (ENSELUG00000011346)	ENSELUG00000001600	b9d1 (ENSELUG00000011213)	EPN2 (ENSELUG00000011145)	grapa (ENSELUG00000029918)	ENSELUG00000014556	prpsap2 (ENSELUG00000014534)	CASKIN1 (ENSELUG00000001621)	traf7 (ENSELUG00000014361)	gng13b (ENSELUG00000014327)
Salmoninae	ANCESTRAL SPECIES	415	ENSGT00940000155537	ENSGT00940000158690.g #13	ENSGT00390000015495	ENSGT00390000014178	ENSGT00950000182935.B.b.d.a	ENSGT00390000001979	ENSGT00940000153340.A	ENSGT00940000155335.s.b	ENSGT00930000151032.A.c.b	ENSGT00950000182906.a.a.a	ENSGT00940000156643.e	ENSGT00940000156643.f	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00390000014300 #20	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032
Huchen	MODERN SPECIES	8429																cpsf4 (ENSHHUG00000006968) #22
Salmoninae_a	DUPLICATION
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	115	ENSGT00940000158690.g.a #13	ENSGT00390000015495	ENSGT00390000014178	ENSGT00950000182935.B.b.d.a.k	ENSGT00390000001979	ENSGT00940000153340.A	ENSGT00940000155335.s.b	ENSGT00940000167865.c	ENSGT00930000151032.A.c.b	ENSGT00950000182906.a.a.a	ENSGT00940000156643.e	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000014300 #20	ENSGT00940000155520.xb.a #22	ENSGT00940000165557.m.a	ENSGT00940000155520.yb #22	ENSGT00940000165557.l	ENSGT00950000182898.a.b	ENSGT00940000157099.o	ENSGT00950000182960.a.a.b.f.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00510000048339	ENSGT01060000248954	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.i	ENSGT00950000182803.A.a.a.c.a.a.a
Salmo	ANCESTRAL SPECIES	172	ENSGT00940000157972.c.c.a	ENSGT00940000155537.d	ENSGT00940000158690.g.a #13	ENSGT00390000015495	ENSGT00390000014178.i	ENSGT00950000182935.B.b.d.a.k	ENSGT00390000001979	ENSGT00940000153340.A	ENSGT00950000182906.a.a.a	ENSGT00940000156643.e.a	ENSGT00940000156643.f	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b.d	ENSGT00390000014300 #20	ENSGT00940000155520.xb.a #22	ENSGT00940000165557.m.a
Atlantic salmon	DUPLICATION
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	367												ENSSSAG00000090370	ENSSSAG00000120617	ENSSSAG00000058709	ENSSSAG00000106548 #20	cpsf4 (ENSSSAG00000108749) #22	ENSSSAG00000107300	ENSSSAG00000097624	ENSSSAG00000119126
Atlantic salmon	MODERN SPECIES	345																ENSSSAG00000103141 #22	ENSSSAG00000015265	ENSSSAG00000107194	ENSSSAG00000089608	ENSSSAG00000105816	ENSSSAG00000102610
Atlantic salmon	MODERN SPECIES	363														ENSSSAG00000095896	ENSSSAG00000089520 #20	cpsf4 (ENSSSAG00000101908) #22	ENSSSAG00000090010	ENSSSAG00000114200	ENSSSAG00000114593	ENSSSAG00000100470	ENSSSAG00000092752	ENSSSAG00000102726	ENSSSAG00000108811	ENSSSAG00000112672	ENSSSAG00000120285	ENSSSAG00000084967
Oncorhynchus	ANCESTRAL SPECIES	82	ENSGT00950000182935.B.b.d.a.k	ENSGT00390000001979	ENSGT00940000153340.A.n	ENSGT00940000155335.s.b	ENSGT00940000167865.c	ENSGT00930000151032.A.c.b	ENSGT00950000182906.a.a.a	ENSGT00940000156643.e.c	ENSGT00940000156643.e.d	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b.f.b	ENSGT00390000014300.l #20	ENSGT00390000002762.a.b.f.a	ENSGT00390000014300.k #20	ENSGT00940000155520.xb.a #22	ENSGT00940000165557.m.a	ENSGT00950000182898.a.b	ENSGT00940000157099.o	ENSGT00950000182960.a.a.b.f.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00510000048339	ENSGT01060000248954.e.a	ENSGT00530000064157.b.j	ENSGT00940000157022	ENSGT00940000158025.a.a.b.i	ENSGT00950000182803.A.a.a.c.a.a.a	ENSGT00940000157932.m.a	ENSGT00940000156254.o.b
Rainbow trout	MODERN SPECIES	81	wipi2 (ENSOMYG00000049046)	ENSOMYG00000060951 #13	ENSOMYG00000053339	znf598 (ENSOMYG00000057141)	syngr3a (ENSOMYG00000076511)	gfer (ENSOMYG00000075028)	drg2 (ENSOMYG00000075470)	MYO15A (ENSOMYG00000073405)	LLGL1 (ENSOMYG00000071339)	ENSOMYG00000065959	flii (ENSOMYG00000057018)	TOP3A (ENSOMYG00000056459)	smcr8a (ENSOMYG00000071328)	shmt1 (ENSOMYG00000061025)	ENSOMYG00000037117 #20	cpsf4 (ENSOMYG00000060344) #22	ENSOMYG00000069179	atp5mf (ENSOMYG00000059843)	slc29a4a (ENSOMYG00000072420)	ENSOMYG00000051193	ACTB (ENSOMYG00000076844)	ENSOMYG00000070742	RNF216 (ENSOMYG00000065108)	ENSOMYG00000035428	ENSOMYG00000061238	ENSOMYG00000056593
Oncorhynchus_a	ANCESTRAL SPECIES	131	ENSGT00390000017592	ENSGT00940000157972.c.c.b	ENSGT00940000158690.g.a #13	ENSGT00390000015495.h	ENSGT00390000014178	ENSGT00950000182935.B.b.d.a.k.b	ENSGT00930000151032.A.c.b	ENSGT00950000182906.a.a.a	ENSGT00940000156643.e.c	ENSGT00940000156643.e.d	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b.f.b	ENSGT00390000002762.a.b.f.a	ENSGT00390000014300.k #20	ENSGT00940000155520.xb.a #22	ENSGT00940000165557.m.a	ENSGT00950000182898.a.b	ENSGT00940000157099.o	ENSGT00950000183157.a.a.b.c.c	ENSGT00510000048339	ENSGT01060000248954.e.a	ENSGT00530000064157.b.j	ENSGT00940000157022	ENSGT00940000158025.a.a.b.i	ENSGT00950000182803.A.a.a.c.a.a.a	ENSGT00940000157932.m.a	ENSGT00940000156254.o.b
Coho salmon	MODERN SPECIES	35	ENSOKIG00005023055	SMURF1 (ENSOKIG00005022022) #13	CCDC97 (ENSOKIG00005021975)	znf598 (ENSOKIG00005021963)	syngr3a (ENSOKIG00005021954)	gfer (ENSOKIG00005021946)	ENSOKIG00005021942	drg2 (ENSOKIG00005021799)	ENSOKIG00005021774	LLGL1 (ENSOKIG00005021300)	flii (ENSOKIG00005045845)	TOP3A (ENSOKIG00005045081)	smcr8a (ENSOKIG00005044964)	shmt1 (ENSOKIG00005044627)	BUD31 (ENSOKIG00005044579) #20	cpsf4 (ENSOKIG00005044551) #22	atp5mf (ENSOKIG00005044518)	slc29a4a (ENSOKIG00005044475)	ENSOKIG00005044458	ENSOKIG00005044421	ENSOKIG00005044407	ENSOKIG00005044387	ENSOKIG00005044380	RPUSD1 (ENSOKIG00005044369)	ENSOKIG00005044357	gng13b (ENSOKIG00005044353)	traf7 (ENSOKIG00005044318)	CASKIN1 (ENSOKIG00005044252)	ENSOKIG00005044038	ENSOKIG00005044022	grapa (ENSOKIG00005043972)
Chinook salmon	MODERN SPECIES	1238														ENSOTSG00005025351	ENSOTSG00005025352	cpsf4 (ENSOTSG00005025353) #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000155520.xb.b #22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000155520.xb.b #22
Atlantic salmon	MODERN SPECIES	1076												TOP3A (ENSSSAG00000106236)	ENSSSAG00000117890	shmt1 (ENSSSAG00000095063)	ENSSSAG00000107341 #20	ENSSSAG00000087587 #22
Salmoninae_a	ANCESTRAL SPECIES	115	ENSGT00390000014178	ENSGT00950000182935.B.b.d.a.k	ENSGT00390000001979	ENSGT00940000153340.A	ENSGT00940000155335.s.b	ENSGT00940000167865.c	ENSGT00930000151032.A.c.b	ENSGT00950000182906.a.a.a	ENSGT00940000156643.e	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000014300 #20	ENSGT00940000155520.xb.a #22	ENSGT00940000165557.m.a	ENSGT00940000155520.yb #22	ENSGT00940000165557.l	ENSGT00950000182898.a.b	ENSGT00940000157099.o	ENSGT00950000182960.a.a.b.f.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00510000048339	ENSGT01060000248954	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.i	ENSGT00950000182803.A.a.a.c.a.a.a	ENSGT00940000157932.m.a	ENSGT00940000156254.o.b
Oncorhynchus	ANCESTRAL SPECIES	476																ENSGT00940000155520.yb #22	ENSGT00940000165557.l
Rainbow trout	MODERN SPECIES	170					ENSOMYG00000056016	ENSOMYG00000052057	ENSOMYG00000055858	ENSOMYG00000071922	LLGL1 (ENSOMYG00000071356)	flii (ENSOMYG00000070014)	TOP3A (ENSOMYG00000055851)	smcr8a (ENSOMYG00000071508)	shmt1 (ENSOMYG00000075047)	ENSOMYG00000038873 #20	ENSOMYG00000069021	cpsf4 (ENSOMYG00000064519) #22	ATPK (ENSOMYG00000025218)	slc29a4a (ENSOMYG00000066802)	ENSOMYG00000068294	actb2 (ENSOMYG00000050803)	ENSOMYG00000062122	ENSOMYG00000073626	ENSOMYG00000056903	gng13b (ENSOMYG00000058495)	traf7 (ENSOMYG00000069707)	ENSOMYG00000061046	ENSOMYG00000071893	prpsap2 (ENSOMYG00000077678)	ENSOMYG00000051112	grapa (ENSOMYG00000077775)	EPN2 (ENSOMYG00000065303)
Oncorhynchus_a	ANCESTRAL SPECIES	625																ENSGT00940000155520.yb #22	ENSGT00940000165557.l
Coho salmon	MODERN SPECIES	1283														shmt1 (ENSOKIG00005043180)	bud31 (ENSOKIG00005043677) #20	ENSOKIG00005041077 #22	atp5mf (ENSOKIG00005041186)	slc29a4a (ENSOKIG00005041213)	ENSOKIG00005041311	ENSOKIG00005041415	ENSOKIG00005041451
Salmo	ANCESTRAL SPECIES	533																ENSGT00940000155520.yb #22	ENSGT00940000165557.l
River trout	MODERN SPECIES	498	ENSSTUG00000049246	pdia2 (ENSSTUG00000049200)	ENSSTUG00000049187	ENSSTUG00000049183	ENSSTUG00000049163	ENSSTUG00000049134	ENSSTUG00000049126	znf598 (ENSSTUG00000049117)	ENSSTUG00000049114	gfer (ENSSTUG00000049110)	drg2 (ENSSTUG00000049064)	LLGL1 (ENSSTUG00000048510)	flii (ENSSTUG00000048411)	TOP3A (ENSSTUG00000047694)	smcr8a (ENSSTUG00000047653)	ENSSTUG00000047650 #22	atp5mf (ENSSTUG00000047639)	ENSSTUG00000047627	ENSSTUG00000047620	atp5mf (ENSSTUG00000047611)	ENSSTUG00000047606	TOP3A (ENSSTUG00000046129)	smcr8a (ENSSTUG00000046024)	ENSSTUG00000046021	shmt1 (ENSSTUG00000045665)	bud31 (ENSSTUG00000045618) #20	bud31 (ENSSTUG00000045607) #20	SHMT1 (ENSSTUG00000045072)	ENSSTUG00000045024	rgs11 (ENSSTUG00000044945)	rgs11 (ENSSTUG00000044930)
Acanthomorphata	ANCESTRAL SPECIES	25	ENSGT00940000156578.b	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b	ENSGT00510000046773.a.b.c.a	ENSGT00740000115744
Pinecone sodierfish	MODERN SPECIES	22	TOB2 (ENSMMDG00005001914)	tefb (ENSMMDG00005001919)	ZC3H7B (ENSMMDG00005001940)	rangap1a (ENSMMDG00005002100)	ENSMMDG00005002106	rbx1 (ENSMMDG00005002108)	st13 (ENSMMDG00005002112)	xpnpep3 (ENSMMDG00005002129)	EP300 (ENSMMDG00005002268)	cbx7a (ENSMMDG00005002281)	TOP3A (ENSMMDG00005002336)	smcr8a (ENSMMDG00005005274)	bud31 (ENSMMDG00005005279) #20	pdap1b (ENSMMDG00005005282) #19	shmt1 (ENSMMDG00005005341)	cpsf4 (ENSMMDG00005006647) #22	atp5mf (ENSMMDG00005006656)	slc29a4a (ENSMMDG00005006664)	TNRC18 (ENSMMDG00005006669)	ENSMMDG00005006671	FSCN1 (ENSMMDG00005006675)	smurf1 (ENSMMDG00005006730) #13	ENSMMDG00005010170	wipi2 (ENSMMDG00005010188)	mmd2a (ENSMMDG00005010351)	ap5z1 (ENSMMDG00005010407)	CARD11 (ENSMMDG00005010434)	chst12a (ENSMMDG00005010951)	ENSMMDG00005010953	ENSMMDG00005010954	il2rb (ENSMMDG00005010957)
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Tiger tail seahorse	MODERN SPECIES	373	hirip3 (ENSHCOG00000005013)	antkmt (ENSHCOG00000005008)	xpo6 (ENSHCOG00000004987)	nme4 (ENSHCOG00000004895)	eps8l1a (ENSHCOG00000004881)	ENSHCOG00000004828	slc17a7a (ENSHCOG00000004787)	zgc:55558 (ENSHCOG00000004774)	ENSHCOG00000004753	TOP3A (ENSHCOG00000004737)	smcr8a (ENSHCOG00000004709)	bud31 (ENSHCOG00000004703) #20	pdap1b (ENSHCOG00000004693) #19	shmt1 (ENSHCOG00000004683)	shmt1 (ENSHCOG00000004644)	cpsf4 (ENSHCOG00000004397) #22	atp5mf (ENSHCOG00000004373)	slc29a4a (ENSHCOG00000004365)
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000160705.C.b	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Seriola	ANCESTRAL SPECIES	23	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000154598	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b	ENSGT00510000046773.a.b.c.a
Greater amberjack	MODERN SPECIES	90	ENSSDUG00000000265	ENSSDUG00000000254	ENSSDUG00000000234	rangap1a (ENSSDUG00000000140)	ENSSDUG00000000118	rbx1 (ENSSDUG00000000109)	st13 (ENSSDUG00000000080)	xpnpep3 (ENSSDUG00000019212)	EP300 (ENSSDUG00000019084)	cbx7a (ENSSDUG00000019053)	TOP3A (ENSSDUG00000018992)	smcr8a (ENSSDUG00000018983)	bud31 (ENSSDUG00000018971) #20	pdap1b (ENSSDUG00000018958) #19	shmt1 (ENSSDUG00000018925)	cpsf4 (ENSSDUG00000018887) #22	atp5mf (ENSSDUG00000018902)	slc29a4a (ENSSDUG00000018852)	TNRC18 (ENSSDUG00000018737)	ENSSDUG00000018712	FSCN1 (ENSSDUG00000018700)	RNF216 (ENSSDUG00000018678)	smurf1 (ENSSDUG00000018578) #13	ENSSDUG00000018482	wipi2 (ENSSDUG00000018440)	mmd2a (ENSSDUG00000018411)	ap5z1 (ENSSDUG00000018384)	ENSSDUG00000018311	chst12a (ENSSDUG00000018290)	papola (ENSSDUG00000018247)	ENSSDUG00000018239
Yellowtail amberjack	MODERN SPECIES	3280	ENSSLDG00000018441	ENSSLDG00000018450	ENSSLDG00000018457	rangap1a (ENSSLDG00000018507)	ENSSLDG00000018769	rbx1 (ENSSLDG00000018791)	st13 (ENSSLDG00000018807)	xpnpep3 (ENSSLDG00000018834)	EP300 (ENSSLDG00000018909)	cbx7a (ENSSLDG00000018956)	TOP3A (ENSSLDG00000018973)	smcr8a (ENSSLDG00000019009)	bud31 (ENSSLDG00000019020) #20	pdap1b (ENSSLDG00000019036) #19	shmt1 (ENSSLDG00000019048)	cpsf4 (ENSSLDG00000019078) #22	atp5mf (ENSSLDG00000019105)	slc29a4a (ENSSLDG00000019119)	TNRC18 (ENSSLDG00000019179)	ENSSLDG00000019482	FSCN1 (ENSSLDG00000019505)
Barramundi perch	MODERN SPECIES	147	TOB2 (ENSLCAG00010011105)	tefb (ENSLCAG00010011099)	ZC3H7B (ENSLCAG00010011084)	rangap1a (ENSLCAG00010011078)	ENSLCAG00010011070	rbx1 (ENSLCAG00010011043)	st13 (ENSLCAG00010011035)	xpnpep3 (ENSLCAG00010011016)	EP300 (ENSLCAG00010010925)	cbx7a (ENSLCAG00010010903)	TOP3A (ENSLCAG00010010786)	smcr8a (ENSLCAG00010010747)	bud31 (ENSLCAG00010010738) #20	pdap1b (ENSLCAG00010010730) #19	shmt1 (ENSLCAG00010010699)	cpsf4 (ENSLCAG00010010683) #22	atp5mf (ENSLCAG00010010678)	slc29a4a (ENSLCAG00010010671)	TNRC18 (ENSLCAG00010010662)	ENSLCAG00010010498	FSCN1 (ENSLCAG00010010462)	RNF216 (ENSLCAG00010010434)	smurf1 (ENSLCAG00010010006) #13	ENSLCAG00010009895	wipi2 (ENSLCAG00010009871)	MMD2 (ENSLCAG00010009861)	ap5z1 (ENSLCAG00010009758)	ENSLCAG00010009712	ENSLCAG00010009702	chst12a (ENSLCAG00010009699)	ENSLCAG00010009698
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000160705.C.b	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c
Turbot	MODERN SPECIES	10	TOB2 (ENSSMAG00000005849)	tefb (ENSSMAG00000037308)	ZC3H7B (ENSSMAG00000005891)	RANGAP1 (ENSSMAG00000005903)	ENSSMAG00000005932	rbx1 (ENSSMAG00000005989)	st13 (ENSSMAG00000006090)	xpnpep3 (ENSSMAG00000006101)	ENSSMAG00000006120	cbx7a (ENSSMAG00000006170)	ENSSMAG00000006179	ENSSMAG00000006220	bud31 (ENSSMAG00000034362) #20	ENSSMAG00000006267 #19	shmt1 (ENSSMAG00000006361)	cpsf4 (ENSSMAG00000006374) #22	ENSSMAG00000006396	slc29a4a (ENSSMAG00000006475)	ACTB (ENSSMAG00000006565)	ENSSMAG00000006528	FSCN1 (ENSSMAG00000006599)	RNF216 (ENSSMAG00000006611)	ENSSMAG00000006623 #13	ENSSMAG00000006644	wipi2 (ENSSMAG00000006740)	ENSSMAG00000006771	ap5z1 (ENSSMAG00000006802)	ENSSMAG00000006824	ENSSMAG00000006866	ENSSMAG00000037129	ENSSMAG00000006909
Tongue sole	MODERN SPECIES	8	TNRC6A (ENSCSEG00000018661)	ENSCSEG00000018703	ENSCSEG00000018711	CACNG3 (ENSCSEG00000018716)	ENSCSEG00000018723	PRKCB (ENSCSEG00000018731)	socs1a (ENSCSEG00000018742)	CLEC16A (ENSCSEG00000018748)	dexi (ENSCSEG00000018784)	CIITA (ENSCSEG00000018788)	nubp1 (ENSCSEG00000018797)	emp2 (ENSCSEG00000018813)	ENSCSEG00000018821	GRIN2A (ENSCSEG00000019030)	ENSCSEG00000019045	cpsf4 (ENSCSEG00000019055) #22	atp5mf (ENSCSEG00000019090)	slc29a4a (ENSCSEG00000019097)	ENSCSEG00000019109	ENSCSEG00000019119	actb (ENSCSEG00000019142)	FSCN1 (ENSCSEG00000019160)	ENSCSEG00000019168	smurf1 (ENSCSEG00000006119) #13	ENSCSEG00000006134	wipi2 (ENSCSEG00000006152)	mmd2a (ENSCSEG00000006170)	ap5z1 (ENSCSEG00000006177)	CARD11 (ENSCSEG00000006194)	chst12a (ENSCSEG00000006200)	ENSCSEG00000006203
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Zig-zag eel	MODERN SPECIES	22	tefb (ENSMAMG00000007334)	ZC3H7B (ENSMAMG00000007320)	RANGAP1 (ENSMAMG00000007279)	ENSMAMG00000007220	rbx1 (ENSMAMG00000006789)	st13 (ENSMAMG00000006767)	xpnpep3 (ENSMAMG00000006750)	ENSMAMG00000006706	ENSMAMG00000006590	cbx7a (ENSMAMG00000006424)	ENSMAMG00000006374	ENSMAMG00000006366	bud31 (ENSMAMG00000006354) #20	ENSMAMG00000006324 #19	shmt1 (ENSMAMG00000006285)	cpsf4 (ENSMAMG00000006244) #22	ENSMAMG00000006221	slc29a4a (ENSMAMG00000006177)	TNRC18 (ENSMAMG00000006142)	ENSMAMG00000006109	FSCN1 (ENSMAMG00000006071)	RNF216 (ENSMAMG00000006051)	smurf1 (ENSMAMG00000005989) #13	ENSMAMG00000005888	wipi2 (ENSMAMG00000005834)	MMD2 (ENSMAMG00000005812)	ap5z1 (ENSMAMG00000005791)	ENSMAMG00000005729	ENSMAMG00000025120	ENSMAMG00000005704	il2rb (ENSMAMG00000005698)
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Climbing perch	MODERN SPECIES	21	TOB2 (ENSATEG00000028658)	tefb (ENSATEG00000027353)	ZC3H7B (ENSATEG00000007908)	RANGAP1 (ENSATEG00000007709)	ENSATEG00000007562	rbx1 (ENSATEG00000007548)	st13 (ENSATEG00000007540)	xpnpep3 (ENSATEG00000007507)	ENSATEG00000007245	cbx7a (ENSATEG00000028506)	ENSATEG00000007160	ENSATEG00000007153	bud31 (ENSATEG00000007134) #20	ENSATEG00000007106 #19	shmt1 (ENSATEG00000007061)	cpsf4 (ENSATEG00000006994) #22	ENSATEG00000028258	slc29a4a (ENSATEG00000006954)	ENSATEG00000006938	ENSATEG00000006911	ENSATEG00000006883	ENSATEG00000006873	smurf1 (ENSATEG00000006799) #13	ENSATEG00000006606	wipi2 (ENSATEG00000006552)	MMD2 (ENSATEG00000006514)	ap5z1 (ENSATEG00000006503)	ENSATEG00000006382	ENSATEG00000006352	ENSATEG00000006340	il2rb (ENSATEG00000006333)
Siamese fighting fish	MODERN SPECIES	19	TOB2 (ENSBSLG00000018137)	tefb (ENSBSLG00000018141)	zc3h7ba (ENSBSLG00000018253)	RANGAP1 (ENSBSLG00000018334)	ENSBSLG00000018480	rbx1 (ENSBSLG00000018549)	st13 (ENSBSLG00000018560)	xpnpep3 (ENSBSLG00000018571)	EP300 (ENSBSLG00000018845)	ENSBSLG00000019668	TOP3A (ENSBSLG00000019675)	smcr8a (ENSBSLG00000019940)	bud31 (ENSBSLG00000019947) #20	pdap1b (ENSBSLG00000019956) #19	shmt1 (ENSBSLG00000020011)	cpsf4 (ENSBSLG00000020471) #22	atp5mf (ENSBSLG00000020484)	slc29a4a (ENSBSLG00000020485)	TNRC18 (ENSBSLG00000021039)	ENSBSLG00000001690	ENSBSLG00000001756	ENSBSLG00000001775	smurf1 (ENSBSLG00000001842) #13	wipi2 (ENSBSLG00000001996)	MMD2 (ENSBSLG00000002000)	ap5z1 (ENSBSLG00000002014)	CARD11 (ENSBSLG00000002054)	chst12a (ENSBSLG00000002130)	ENSBSLG00000002143	il2rb (ENSBSLG00000002162)	ENSBSLG00000002186
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000160705.C.b	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c
Tetraodontidae	ANCESTRAL SPECIES	41	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b.c	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00550000075088.a.b	ENSGT00510000046773.a.b.c.a	ENSGT00510000046773.a.b.d	ENSGT00740000115744
Tetraodon	MODERN SPECIES	26	ENSTNIG00000004047	ENSTNIG00000019519	ENSTNIG00000004326	ENSTNIG00000004418	rangap1a (ENSTNIG00000005099)	ENSTNIG00000005098	rbx1 (ENSTNIG00000005097)	st13 (ENSTNIG00000005096)	xpnpep3 (ENSTNIG00000005095)	EP300 (ENSTNIG00000005094)	cbx7a (ENSTNIG00000006270)	TOP3A (ENSTNIG00000006269)	smcr8a (ENSTNIG00000006268)	bud31 (ENSTNIG00000006267) #20	shmt1 (ENSTNIG00000006266)	cpsf4 (ENSTNIG00000006265) #22	atp5mf (ENSTNIG00000003693)	atp5mf (ENSTNIG00000006264)	slc29a4a (ENSTNIG00000003694)	ENSTNIG00000003695	ENSTNIG00000007001	ENSTNIG00000007002	FSCN1 (ENSTNIG00000014246)	SMURF1 (ENSTNIG00000014247) #13	wipi2 (ENSTNIG00000004327)	ENSTNIG00000006425	ENSTNIG00000006424	chst12a (ENSTNIG00000006423)	ENSTNIG00000006422	ENSTNIG00000001793	ube2ib (ENSTNIG00000006421)
Fugu	MODERN SPECIES	17	ENSTRUG00000004505	pick1 (ENSTRUG00000005715)	plbd1a (ENSTRUG00000005509)	rangap1a (ENSTRUG00000008041)	ENSTRUG00000007863	rbx1 (ENSTRUG00000007816)	st13 (ENSTRUG00000007578)	xpnpep3 (ENSTRUG00000007415)	EP300 (ENSTRUG00000006616)	cbx7a (ENSTRUG00000023605)	TOP3A (ENSTRUG00000006332)	smcr8a (ENSTRUG00000006263)	bud31 (ENSTRUG00000023390) #20	pdap1b (ENSTRUG00000024967) #19	shmt1 (ENSTRUG00000003948)	cpsf4 (ENSTRUG00000030405) #22	atp5mf (ENSTRUG00000003441)	slc29a4a (ENSTRUG00000005833)	TNRC18 (ENSTRUG00000005638)	ACTB (ENSTRUG00000005447)	FSCN1 (ENSTRUG00000005218)	smurf1 (ENSTRUG00000004668) #13	wipi2 (ENSTRUG00000004292)	mmd2a (ENSTRUG00000004208)	ap5z1 (ENSTRUG00000003903)	ENSTRUG00000002024	chst12a (ENSTRUG00000025406)	ENSTRUG00000031320	ENSTRUG00000021244	ENSTRUG00000025136	mpst (ENSTRUG00000001668)
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099.d	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000160705.C.b	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099.d	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Lumpfish	MODERN SPECIES	23	TOB2 (ENSCLMG00005005101)	tefb (ENSCLMG00005005102)	zc3h7ba (ENSCLMG00005005104)	rangap1a (ENSCLMG00005005106)	ENSCLMG00005005112	rbx1 (ENSCLMG00005005119)	st13 (ENSCLMG00005005126)	xpnpep3 (ENSCLMG00005005139)	ENSCLMG00005005172	cbx7a (ENSCLMG00005005188)	TOP3A (ENSCLMG00005005202)	smcr8a (ENSCLMG00005006880)	bud31 (ENSCLMG00005006882) #20	pdap1b (ENSCLMG00005006885) #19	shmt1 (ENSCLMG00005006932)	cpsf4 (ENSCLMG00005010356) #22	atp5mf (ENSCLMG00005010357)	slc29a4a (ENSCLMG00005010359)	ENSCLMG00005010361	ENSCLMG00005010364	FSCN1 (ENSCLMG00005010366)	RNF216 (ENSCLMG00005010369)	smurf1 (ENSCLMG00005010392) #13	wipi2 (ENSCLMG00005012140)	MMD2 (ENSCLMG00005012147)	ap5z1 (ENSCLMG00005012231)	ENSCLMG00005012297	chst12a (ENSCLMG00005012349)	ENSCLMG00005012350	il2rb (ENSCLMG00005012351)	ube2ib (ENSCLMG00005012352)
Stickleback	MODERN SPECIES	10	aco2 (ENSGACG00000007567)	TOB2 (ENSGACG00000007621)	tefb (ENSGACG00000007628)	zc3h7ba (ENSGACG00000007633)	rangap1a (ENSGACG00000007645)	ENSGACG00000007654	rbx1 (ENSGACG00000007657)	st13 (ENSGACG00000007663)	xpnpep3 (ENSGACG00000007684)	EP300 (ENSGACG00000007707)	cbx7a (ENSGACG00000007724)	TOP3A (ENSGACG00000007735)	smcr8a (ENSGACG00000007755)	bud31 (ENSGACG00000007759) #20	shmt1 (ENSGACG00000007764)	cpsf4 (ENSGACG00000007792) #22	atp5mf (ENSGACG00000007796)	slc29a4a (ENSGACG00000007807)	ENSGACG00000007811	ENSGACG00000007822	ENSGACG00000007836	FSCN1 (ENSGACG00000007892)	ENSGACG00000007906	ENSGACG00000007911	smurf1 (ENSGACG00000007912) #13	ENSGACG00000007926	wipi2 (ENSGACG00000007931)	mmd2a (ENSGACG00000007947)	ap5z1 (ENSGACG00000007962)	CARD11 (ENSGACG00000007978)	chst12a (ENSGACG00000007992)
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099.d	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000160705.C.b	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c
Channel bull blenny	MODERN SPECIES	22	tefb (ENSCGOG00000008996)	zc3h7ba (ENSCGOG00000008974)	rangap1a (ENSCGOG00000008714)	ENSCGOG00000008708	rbx1 (ENSCGOG00000008684)	st13 (ENSCGOG00000008674)	xpnpep3 (ENSCGOG00000008535)	EP300 (ENSCGOG00000007191)	ENSCGOG00000007162	TOP3A (ENSCGOG00000006110)	smcr8a (ENSCGOG00000006070)	bud31 (ENSCGOG00000006063) #20	pdap1b (ENSCGOG00000006059) #19	shmt1 (ENSCGOG00000004877)	atp5mf (ENSCGOG00000004791)	cpsf4 (ENSCGOG00000004795) #22	slc29a4a (ENSCGOG00000004740)	ENSCGOG00000004726	actb2 (ENSCGOG00000004016)	FSCN1 (ENSCGOG00000004005)	ENSCGOG00000003967	smurf1 (ENSCGOG00000002905) #13	ENSCGOG00000002827	wipi2 (ENSCGOG00000002192)	MMD2 (ENSCGOG00000002155)	ap5z1 (ENSCGOG00000002086)	CARD11 (ENSCGOG00000001917)	chst12a (ENSCGOG00000001904)	ENSCGOG00000001903	il2rb (ENSCGOG00000001900)	ube2ib (ENSCGOG00000001819)
Pike perch	MODERN SPECIES	38	TOB2 (ENSSLUG00000023597)	tefb (ENSSLUG00000023601)	zc3h7ba (ENSSLUG00000023610)	rangap1a (ENSSLUG00000001614)	ENSSLUG00000001677	rbx1 (ENSSLUG00000001701)	st13 (ENSSLUG00000001707)	xpnpep3 (ENSSLUG00000001728)	EP300 (ENSSLUG00000001890)	cbx7a (ENSSLUG00000002361)	TOP3A (ENSSLUG00000002501)	smcr8a (ENSSLUG00000004379)	bud31 (ENSSLUG00000004387) #20	pdap1b (ENSSLUG00000004402) #19	shmt1 (ENSSLUG00000004456)	cpsf4 (ENSSLUG00000004689) #22	atp5mf (ENSSLUG00000004711)	slc29a4a (ENSSLUG00000004736)	ENSSLUG00000004760	ENSSLUG00000004774	FSCN1 (ENSSLUG00000004784)	RNF216 (ENSSLUG00000004798)	smurf1 (ENSSLUG00000004895) #13	ENSSLUG00000006719	wipi2 (ENSSLUG00000006792)	MMD2 (ENSSLUG00000007019)	ap5z1 (ENSSLUG00000007091)	CARD11 (ENSSLUG00000007480)	chst12a (ENSSLUG00000007909)	ENSSLUG00000007912	il2rb (ENSSLUG00000007917)
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Gilthead seabream	MODERN SPECIES	15	TOB2 (ENSSAUG00010013477)	tefb (ENSSAUG00010013479)	rangap1a (ENSSAUG00010013484)	ZC3H7B (ENSSAUG00010013487)	ENSSAUG00010013488	rbx1 (ENSSAUG00010013490)	st13 (ENSSAUG00010013492)	xpnpep3 (ENSSAUG00010013589)	EP300 (ENSSAUG00010013614)	cbx7a (ENSSAUG00010015081)	TOP3A (ENSSAUG00010015097)	smcr8a (ENSSAUG00010015206)	bud31 (ENSSAUG00010015207) #20	pdap1b (ENSSAUG00010015210) #19	shmt1 (ENSSAUG00010015227)	cpsf4 (ENSSAUG00010015402) #22	atp5mf (ENSSAUG00010015404)	slc29a4a (ENSSAUG00010015410)	TNRC18 (ENSSAUG00010015422)	ENSSAUG00010015428	FSCN1 (ENSSAUG00010015448)	RNF216 (ENSSAUG00010015458)	smurf1 (ENSSAUG00010015946) #13	ENSSAUG00010017732	wipi2 (ENSSAUG00010017739)	mmd2a (ENSSAUG00010016193)	ap5z1 (ENSSAUG00010016205)	ENSSAUG00010016310	chst12a (ENSSAUG00010016330)	ENSSAUG00010016332	ENSSAUG00010016333
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	35	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Large yellow croaker	MODERN SPECIES	483	TOB2 (ENSLCRG00005012366)	tefb (ENSLCRG00005012365)	zc3h7ba (ENSLCRG00005012324)	rangap1a (ENSLCRG00005012231)	ENSLCRG00005012225	rbx1 (ENSLCRG00005012224)	st13 (ENSLCRG00005012219)	xpnpep3 (ENSLCRG00005012027)	EP300 (ENSLCRG00005011793)	cbx7a (ENSLCRG00005011778)	TOP3A (ENSLCRG00005011370)	smcr8a (ENSLCRG00005011345)	bud31 (ENSLCRG00005011339) #20	pdap1b (ENSLCRG00005011336) #19	shmt1 (ENSLCRG00005009735)	cpsf4 (ENSLCRG00005009728) #22	atp5mf (ENSLCRG00005009727)	slc29a4a (ENSLCRG00005009699)	TNRC18 (ENSLCRG00005009693)	ENSLCRG00005009660	FSCN1 (ENSLCRG00005009652)	RNF216 (ENSLCRG00005009608)	smurf1 (ENSLCRG00005008991) #13	ENSLCRG00005008973	wipi2 (ENSLCRG00005008952)	mmd2a (ENSLCRG00005008949)	ap5z1 (ENSLCRG00005008483)	CARD11 (ENSLCRG00005008474)	chst12a (ENSLCRG00005008473)	C1QTNF6 (ENSLCRG00005008472)	il2rb (ENSLCRG00005008470)
European seabass	MODERN SPECIES	21	ENSDLAG00005031848	ACO2 (ENSDLAG00005008667)	TOB2 (ENSDLAG00005031270)	TEF (ENSDLAG00005034315)	ZC3H7B (ENSDLAG00005008571)	RANGAP1 (ENSDLAG00005008464)	ENSDLAG00005008437	st13 (ENSDLAG00005008416)	xpnpep3 (ENSDLAG00005031557)	EP300 (ENSDLAG00005008265)	cbx7a (ENSDLAG00005008257)	ENSDLAG00005008007	ENSDLAG00005007986	ENSDLAG00005007959 #20	ENSDLAG00005007543	cpsf4 (ENSDLAG00005030914) #22	ENSDLAG00005007485	slc29a4a (ENSDLAG00005007426)	TNRC18 (ENSDLAG00005007088)	ENSDLAG00005028561	FSCN1 (ENSDLAG00005007046)	RNF216 (ENSDLAG00005006912)	smurf1 (ENSDLAG00005005887) #13	ENSDLAG00005005438	wipi2 (ENSDLAG00005005248)	MMD2 (ENSDLAG00005033203)	ap5z1 (ENSDLAG00005005205)	ENSDLAG00005005025	ENSDLAG00005005000	il2rb (ENSDLAG00005031516)	ENSDLAG00005004936
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Aplocheiloidei	ANCESTRAL SPECIES	30	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00940000177422	ENSGT00550000075088.a.b
Mangrove rivulus	MODERN SPECIES	37	ENSKMAG00000014939	zc3h7ba (ENSKMAG00000014972)	rangap1a (ENSKMAG00000015063)	ENSKMAG00000015130	rbx1 (ENSKMAG00000015160)	st13 (ENSKMAG00000015212)	xpnpep3 (ENSKMAG00000015289)	EP300 (ENSKMAG00000015334)	ENSKMAG00000015385	TOP3A (ENSKMAG00000015416)	smcr8a (ENSKMAG00000015470)	bud31 (ENSKMAG00000015481) #20	pdap1b (ENSKMAG00000015491) #19	shmt1 (ENSKMAG00000015534)	shmt1 (ENSKMAG00000015600)	cpsf4 (ENSKMAG00000015642) #22	atp5mf (ENSKMAG00000015662)	slc29a4a (ENSKMAG00000015698)	TNRC18 (ENSKMAG00000015814)	ENSKMAG00000016009	FSCN1 (ENSKMAG00000016031)	RNF216 (ENSKMAG00000016053)	smurf1 (ENSKMAG00000016086) #13	wipi2 (ENSKMAG00000016149)	mmd2a (ENSKMAG00000016187)	ap5z1 (ENSKMAG00000016203)	CARD11 (ENSKMAG00000016241)	chst12a (ENSKMAG00000016278)	C1QTNF6 (ENSKMAG00000016291)	ENSKMAG00000016305	ENSKMAG00000016317
Turquoise killifish	MODERN SPECIES	1612	ZC3H7B (ENSNFUG00015003711)	ENSNFUG00015003701	ENSNFUG00015003698	rangap1a (ENSNFUG00015003621)	RBX1 (ENSNFUG00015003594)	ST13 (ENSNFUG00015003586)	XPNPEP3 (ENSNFUG00015003571)	ENSNFUG00015003562	ENSNFUG00015003503	cbx7a (ENSNFUG00015003485)	TOP3A (ENSNFUG00015003386)	SMCR8A (ENSNFUG00015003364)	BUD31 (ENSNFUG00015003359) #20	PDAP1B (ENSNFUG00015003354) #19	shmt1 (ENSNFUG00015003312)	CPSF4 (ENSNFUG00015003278) #22	AL928657.1 (ENSNFUG00015003273)	ENSNFUG00015003269	slc29a4a (ENSNFUG00015003258)	TNRC18 (ENSNFUG00015003248)	ENSNFUG00015003210	FSCN1A (ENSNFUG00015003183)	RNF216 (ENSNFUG00015003175)	SMURF1 (ENSNFUG00015003090) #13	WIPI2 (ENSNFUG00015003056)	MMD2 (ENSNFUG00015003032)	ENSNFUG00015003024	ap5z1 (ENSNFUG00015003007)	CARD11 (ENSNFUG00015002989)	CHST12A (ENSNFUG00015002983)	C1QTNF6A (ENSNFUG00015002982)
Cyprinodontoidei	ANCESTRAL SPECIES	22	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b.k	ENSGT00390000002762.a.b.l	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b.k	ENSGT00390000002762.a.b.l	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Poecilia	ANCESTRAL SPECIES	18	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b.k	ENSGT00390000002762.a.b.l	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
NAME_6	ANCESTRAL SPECIES	63	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b.k	ENSGT00390000002762.a.b.l	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Amazon molly	MODERN SPECIES	600	tefb (ENSPFOG00000013950)	ZC3H7B (ENSPFOG00000013982)	rangap1a (ENSPFOG00000014218)	ENSPFOG00000024598	rbx1 (ENSPFOG00000014301)	st13 (ENSPFOG00000014319)	xpnpep3 (ENSPFOG00000014371)	EP300 (ENSPFOG00000014408)	cbx7a (ENSPFOG00000014553)	TOP3A (ENSPFOG00000014577)	smcr8a (ENSPFOG00000014749)	bud31 (ENSPFOG00000014763) #20	pdap1b (ENSPFOG00000014776) #19	shmt1 (ENSPFOG00000014784)	shmt1 (ENSPFOG00000014911)	cpsf4 (ENSPFOG00000014912) #22	atp5mf (ENSPFOG00000014956)	slc29a4a (ENSPFOG00000014964)	TNRC18 (ENSPFOG00000015023)	ENSPFOG00000015123	FSCN1 (ENSPFOG00000015146)	RNF216 (ENSPFOG00000015172)	smurf1 (ENSPFOG00000015224) #13	wipi2 (ENSPFOG00000015370)	cd82a (ENSPFOG00000015431)	kmt5b (ENSPFOG00000015505)	pole3 (ENSPFOG00000015535)	rpl12 (ENSPFOG00000015551)	ENSPFOG00000015568	GABARAPL2 (ENSPFOG00000015577)	nqo1 (ENSPFOG00000015593)
Sailfin molly	MODERN SPECIES	1940															ENSPLAG00000009625	cpsf4 (ENSPLAG00000009599) #22	atp5mf (ENSPLAG00000009577)	ENSPLAG00000009574
Guppy	MODERN SPECIES	460	aco2 (ENSPREG00000017594)	TOB2 (ENSPREG00000017632)	tefb (ENSPREG00000017653)	ZC3H7B (ENSPREG00000017699)	rangap1a (ENSPREG00000017770)	rbx1 (ENSPREG00000017818)	st13 (ENSPREG00000017893)	xpnpep3 (ENSPREG00000017918)	EP300 (ENSPREG00000017942)	ENSPREG00000018018	TOP3A (ENSPREG00000018044)	smcr8a (ENSPREG00000018112)	bud31 (ENSPREG00000018122) #20	pdap1b (ENSPREG00000018130) #19	shmt1 (ENSPREG00000018149)	cpsf4 (ENSPREG00000018166) #22	atp5mf (ENSPREG00000018180)	slc29a4a (ENSPREG00000018228)	TNRC18 (ENSPREG00000018258)	actb (ENSPREG00000018292)	FSCN1 (ENSPREG00000018339)	ENSPREG00000018368	smurf1 (ENSPREG00000018426) #13	wipi2 (ENSPREG00000018468)	MMD2 (ENSPREG00000018489)	ap5z1 (ENSPREG00000018514)	ENSPREG00000018546	ENSPREG00000018562	chst12a (ENSPREG00000018573)	ENSPREG00000018579	ENSPREG00000018591
Platyfish	MODERN SPECIES	7	tefb (ENSXMAG00000026333)	ZC3H7B (ENSXMAG00000022258)	rangap1a (ENSXMAG00000003726)	ENSXMAG00000025962	rbx1 (ENSXMAG00000025913)	st13 (ENSXMAG00000003718)	xpnpep3 (ENSXMAG00000003707)	EP300 (ENSXMAG00000003691)	cbx7a (ENSXMAG00000024328)	TOP3A (ENSXMAG00000003671)	smcr8a (ENSXMAG00000003670)	bud31 (ENSXMAG00000003664) #20	pdap1b (ENSXMAG00000003656) #19	shmt1 (ENSXMAG00000003644)	atp5mf (ENSXMAG00000022540)	cpsf4 (ENSXMAG00000024670) #22	slc29a4a (ENSXMAG00000025766)	TNRC18 (ENSXMAG00000000969)	ENSXMAG00000000982	FSCN1 (ENSXMAG00000000999)	RNF216 (ENSXMAG00000001006)	ENSXMAG00000024191	smurf1 (ENSXMAG00000001013) #13	wipi2 (ENSXMAG00000001048)	MMD2 (ENSXMAG00000028136)	ap5z1 (ENSXMAG00000001068)	CARD11 (ENSXMAG00000001085)	chst12a (ENSXMAG00000026379)	ENSXMAG00000001125	il2rb (ENSXMAG00000001127)	ENSXMAG00000001134
NAME_4	ANCESTRAL SPECIES	36	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b.k	ENSGT00390000002762.a.b.l	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Sheepshead minnow	MODERN SPECIES	1713											bud31 (ENSCVAG00000016376) #20	pdap1b (ENSCVAG00000016393) #19	shmt1 (ENSCVAG00000016415)	shmt1 (ENSCVAG00000016460)	shmt1 (ENSCVAG00000016502)	cpsf4 (ENSCVAG00000016528) #22	atp5mf (ENSCVAG00000016572)	slc29a4a (ENSCVAG00000016610)
Mummichog	MODERN SPECIES	395														shmt1 (ENSFHEG00000010953)	shmt1 (ENSFHEG00000010906)	cpsf4 (ENSFHEG00000010880) #22	atp5mf (ENSFHEG00000010853)	slc29a4a (ENSFHEG00000010836)	ENSFHEG00000010803	ENSFHEG00000010793	FSCN1 (ENSFHEG00000010780)	RNF216 (ENSFHEG00000010758)	smurf1 (ENSFHEG00000010695) #13	wipi2 (ENSFHEG00000010574)	mmd2a (ENSFHEG00000010533)	ap5z1 (ENSFHEG00000010508)	CARD11 (ENSFHEG00000010483)	chst12a (ENSFHEG00000010465)	C1QTNF6 (ENSFHEG00000010432)	ENSFHEG00000010426	ENSFHEG00000010415
Oryzias	ANCESTRAL SPECIES		ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b.sb	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Oryzias_a	ANCESTRAL SPECIES	20	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j.g	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b.sb	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Chinese medaka	MODERN SPECIES	907											TOP3A (ENSOSIG00000009574)	smcr8a (ENSOSIG00000009570)	bud31 (ENSOSIG00000009569) #20	pdap1b (ENSOSIG00000009568) #19	shmt1 (ENSOSIG00000009422)	cpsf4 (ENSOSIG00000009394) #22	atp5mf (ENSOSIG00000009393)	slc29a4a (ENSOSIG00000009387)	ENSOSIG00000009378	ENSOSIG00000009285	FSCN1 (ENSOSIG00000009275)	ENSOSIG00000008771	smurf1 (ENSOSIG00000008452) #13	wipi2 (ENSOSIG00000008296)	ENSOSIG00000008285	CARD11 (ENSOSIG00000008236)	chst12a (ENSOSIG00000008232)	C1QTNF6 (ENSOSIG00000008231)	ENSOSIG00000008230	ube2ib (ENSOSIG00000008229)	ENSOSIG00000008228
Japanese Medaka HdrR	MODERN SPECIES	22	TOB2 (ENSORLG00000014151)	tefb (ENSORLG00000014144)	ZC3H7B (ENSORLG00000014127)	rangap1a (ENSORLG00000028033)	ENSORLG00000014083	rbx1 (ENSORLG00000014060)	st13 (ENSORLG00000014052)	xpnpep3 (ENSORLG00000014010)	EP300 (ENSORLG00000013972)	cbx7a (ENSORLG00000026459)	TOP3A (ENSORLG00000013858)	smcr8a (ENSORLG00000013820)	bud31 (ENSORLG00000013809) #20	pdap1b (ENSORLG00000028511) #19	shmt1 (ENSORLG00000013776)	cpsf4 (ENSORLG00000022798) #22	atp5mf (ENSORLG00000023475)	ENSORLG00000027893	slc29a4a (ENSORLG00000013699)	TNRC18 (ENSORLG00000013686)	actb2 (ENSORLG00000013676)	FSCN1 (ENSORLG00000013664)	RNF216 (ENSORLG00000013652)	smurf1 (ENSORLG00000013636) #13	wipi2 (ENSORLG00000013601)	mmd2a (ENSORLG00000027433)	ap5z1 (ENSORLG00000013568)	CARD11 (ENSORLG00000013537)	chst12a (ENSORLG00000013533)	ENSORLG00000029259	C1QTNF6 (ENSORLG00000010706)
Oryzias_b	ANCESTRAL SPECIES	30	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b.sb	ENSGT00940000160396	ENSGT00940000177422	ENSGT00550000075088.a.b
Indian medaka	MODERN SPECIES	9	TOB2 (ENSOMEG00000005730)	tefb (ENSOMEG00000005710)	ZC3H7B (ENSOMEG00000005686)	RANGAP1 (ENSOMEG00000005637)	ENSOMEG00000005555	rbx1 (ENSOMEG00000005517)	st13 (ENSOMEG00000005496)	xpnpep3 (ENSOMEG00000005454)	EP300 (ENSOMEG00000005385)	cbx7a (ENSOMEG00000005289)	TOP3A (ENSOMEG00000005276)	smcr8a (ENSOMEG00000005241)	bud31 (ENSOMEG00000005234) #20	pdap1b (ENSOMEG00000005224) #19	shmt1 (ENSOMEG00000005205)	cpsf4 (ENSOMEG00000005176) #22	atp5mf (ENSOMEG00000005152)	slc29a4a (ENSOMEG00000005135)	TNRC18 (ENSOMEG00000005103)	ACTB (ENSOMEG00000000111)	FSCN1 (ENSOMEG00000005059)	RNF216 (ENSOMEG00000005042)	smurf1 (ENSOMEG00000005021) #13	wipi2 (ENSOMEG00000004986)	mmd2a (ENSOMEG00000004957)	ap5z1 (ENSOMEG00000001000)	CARD11 (ENSOMEG00000004885)	chst12a (ENSOMEG00000004762)	C1QTNF6 (ENSOMEG00000004726)	ENSOMEG00000004707	ENSOMEG00000004671
Javanese ricefish	MODERN SPECIES	22	polr3h (ENSOJAG00000009879)	TOB2 (ENSOJAG00000009927)	tefb (ENSOJAG00000009947)	zc3h7ba (ENSOJAG00000010004)	rangap1a (ENSOJAG00000010423)	ENSOJAG00000010896	rbx1 (ENSOJAG00000010942)	st13 (ENSOJAG00000010970)	xpnpep3 (ENSOJAG00000010994)	EP300 (ENSOJAG00000011158)	cbx7a (ENSOJAG00000012266)	smcr8a (ENSOJAG00000012988)	bud31 (ENSOJAG00000012994) #20	pdap1b (ENSOJAG00000013025) #19	shmt1 (ENSOJAG00000013039)	cpsf4 (ENSOJAG00000013354) #22	atp5mf (ENSOJAG00000013368)	slc29a4a (ENSOJAG00000013395)	ENSOJAG00000013405	ACTB (ENSOJAG00000013436)	FSCN1 (ENSOJAG00000013632)	RNF216 (ENSOJAG00000013681)	smurf1 (ENSOJAG00000013851) #13	wipi2 (ENSOJAG00000015249)	mmd2a (ENSOJAG00000015657)	ap5z1 (ENSOJAG00000015666)	CARD11 (ENSOJAG00000015715)	chst12a (ENSOJAG00000015821)	C1QTNF6 (ENSOJAG00000015826)	ENSOJAG00000015832	ENSOJAG00000015843
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Cichlidae	ANCESTRAL SPECIES	19	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347	ENSGT00940000155618	ENSGT00940000165277.b	ENSGT00440000039203.j	ENSGT00390000018542.a.b	ENSGT00940000156578.a.a	ENSGT00940000154208.d	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347	ENSGT00940000155618	ENSGT00940000165277.b	ENSGT00440000039203.j	ENSGT00390000018542.a.b	ENSGT00940000156578.a.a	ENSGT00940000154208.d	ENSGT00390000018426	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	27	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347	ENSGT00940000155618	ENSGT00940000165277.b	ENSGT00440000039203.j	ENSGT00390000018542.a.b	ENSGT00940000156578.a.a	ENSGT00940000154208.d	ENSGT00390000018426	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Haplochromini	ANCESTRAL SPECIES	54													ENSGT00390000014300.b #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00390000004541.j	ENSGT00940000165470.d	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396
Burton s mouthbrooder	MODERN SPECIES	753												bud31 (ENSHBUG00000013563) #20	pdap1b (ENSHBUG00000013591) #19	shmt1 (ENSHBUG00000013661)	atp5mf (ENSHBUG00000013687)	cpsf4 (ENSHBUG00000013699) #22	slc29a4a (ENSHBUG00000000406)	ENSHBUG00000013755	ENSHBUG00000013766	ENSHBUG00000013796	FSCN1 (ENSHBUG00000013818)	RNF216 (ENSHBUG00000013829)	smurf1 (ENSHBUG00000013857) #13	ENSHBUG00000014076	wipi2 (ENSHBUG00000014150)	mmd2a (ENSHBUG00000014183)	ap5z1 (ENSHBUG00000014221)	CARD11 (ENSHBUG00000014273)	chst12a (ENSHBUG00000014302)	ENSHBUG00000014308	il2rb (ENSHBUG00000014372)
Haplochromini_A	ANCESTRAL SPECIES	37	ENSGT00940000161578	ENSGT00390000013271	ENSGT00390000013826.j	ENSGT00390000013826.i	ENSGT00940000161164	ENSGT00940000155217.o.b	ENSGT01050000244893.c.a.a.a	ENSGT00940000158180	ENSGT00390000002127	ENSGT00390000015360	ENSGT00390000002886.a.a.b	ENSGT00940000156053	ENSGT00390000014300.b #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00390000004541.j	ENSGT00940000165470.d	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396
Haplochromini_B	ANCESTRAL SPECIES	41	ENSGT00940000161578	ENSGT00390000013271	ENSGT00390000013826.i	ENSGT00940000161164	ENSGT00940000155217.o.b	ENSGT01050000244893.c.a.a.a	ENSGT00940000159365.b.a.b	ENSGT00940000158180	ENSGT00390000002127	ENSGT00390000015360	ENSGT00390000002886.a.a.b	ENSGT00940000156053	ENSGT00390000014300.b #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000160396	ENSGT00510000049239.a.c	ENSGT00550000075088.a.b
Eastern happy	MODERN SPECIES	16	CLEC16A (ENSACLG00000010169)	socs1a (ENSACLG00000010197)	PRKCB (ENSACLG00000010207)	ENSACLG00000010225	ENSACLG00000010235	TNRC6A (ENSACLG00000010240)	ndufab1b (ENSACLG00000010282)	dctn5 (ENSACLG00000010288)	ENSACLG00000010297	USP7 (ENSACLG00000010306)	ENSACLG00000010334	ENSACLG00000010337	bud31 (ENSACLG00000010341) #20	pdap1b (ENSACLG00000010346) #19	shmt1 (ENSACLG00000010356)	cpsf4 (ENSACLG00000010374) #22	atp5mf (ENSACLG00000010386)	slc29a4a (ENSACLG00000010394)	ENSACLG00000010643	ENSACLG00000010670	ENSACLG00000010698	FSCN1 (ENSACLG00000010718)	RNF216 (ENSACLG00000010729)	smurf1 (ENSACLG00000010783) #13	wipi2 (ENSACLG00000010922)	MMD2 (ENSACLG00000010994)	ap5z1 (ENSACLG00000011021)	CARD11 (ENSACLG00000011082)	chst12a (ENSACLG00000011184)	ENSACLG00000011462	ENSACLG00000011466
Zebra mbuna	MODERN SPECIES	1107	dexi (ENSMZEG00005007917)	CLEC16A (ENSMZEG00005007897)	socs1a (ENSMZEG00005007882)	PRKCB (ENSMZEG00005007831)	ENSMZEG00005007804	ENSMZEG00005007792	TNRC6A (ENSMZEG00005007756)	ndufab1b (ENSMZEG00005007730)	dctn5 (ENSMZEG00005007705)	ENSMZEG00005007687	USP7 (ENSMZEG00005007612)	bud31 (ENSMZEG00005007593) #20	pdap1b (ENSMZEG00005007587) #19	shmt1 (ENSMZEG00005007542)	atp5mf (ENSMZEG00005007522)	cpsf4 (ENSMZEG00005007515) #22	slc29a4a (ENSMZEG00005007481)	TNRC18 (ENSMZEG00005007439)	ENSMZEG00005007397	FSCN1 (ENSMZEG00005007362)	RNF216 (ENSMZEG00005007337)	smurf1 (ENSMZEG00005007314) #13	ENSMZEG00005007290	ENSMZEG00005007272	wipi2 (ENSMZEG00005007214)	mmd2a (ENSMZEG00005007185)	ap5z1 (ENSMZEG00005007127)	CARD11 (ENSMZEG00005007053)	chst12a (ENSMZEG00005007022)	ENSMZEG00005007014	il2rb (ENSMZEG00005006969)
P. nyererei	MODERN SPECIES	427	dexi (ENSPNYG00000019006)	CLEC16A (ENSPNYG00000018993)	CLEC16A (ENSPNYG00000018984)	socs1a (ENSPNYG00000018968)	PRKCB (ENSPNYG00000018921)	ENSPNYG00000018905	ENSPNYG00000018879	TNRC6A (ENSPNYG00000018851)	ndufab1b (ENSPNYG00000018838)	dctn5 (ENSPNYG00000018814)	ENSPNYG00000018785	USP7 (ENSPNYG00000018660)	bud31 (ENSPNYG00000018630) #20	pdap1b (ENSPNYG00000018608) #19	shmt1 (ENSPNYG00000018571)	cpsf4 (ENSPNYG00000018559) #22	atp5mf (ENSPNYG00000018539)	slc29a4a (ENSPNYG00000018510)	ENSPNYG00000018455	ENSPNYG00000018427	FSCN1 (ENSPNYG00000018408)	ENSPNYG00000018397	smurf1 (ENSPNYG00000018376) #13	ENSPNYG00000018318	wipi2 (ENSPNYG00000018273)	mmd2a (ENSPNYG00000018238)	ap5z1 (ENSPNYG00000018222)	CARD11 (ENSPNYG00000018165)	chst12a (ENSPNYG00000018150)	ENSPNYG00000018136	il2rb (ENSPNYG00000018082)
Lyretail cichlid	MODERN SPECIES	344	polr3h (ENSNBRG00000003286)	smcr8a (ENSNBRG00000003315)	TOP3A (ENSNBRG00000003374)	ENSNBRG00000003439	EP300 (ENSNBRG00000003468)	xpnpep3 (ENSNBRG00000003563)	ENSNBRG00000003619	rbx1 (ENSNBRG00000003645)	RANGAP1 (ENSNBRG00000003657)	ZC3H7B (ENSNBRG00000003771)	TEF (ENSNBRG00000003823)	TOB2 (ENSNBRG00000003831)	bud31 (ENSNBRG00000003852) #20	pdap1b (ENSNBRG00000003870) #19	shmt1 (ENSNBRG00000003899)	cpsf4 (ENSNBRG00000003943) #22	atp5mf (ENSNBRG00000003971)	slc29a4a (ENSNBRG00000003983)	TNRC18 (ENSNBRG00000004122)	ENSNBRG00000004668	FSCN1 (ENSNBRG00000004704)	RNF216 (ENSNBRG00000004728)	smurf1 (ENSNBRG00000004768) #13	efcab1 (ENSNBRG00000004841)	wipi2 (ENSNBRG00000004870)	ap5z1 (ENSNBRG00000004932)	CARD11 (ENSNBRG00000005011)	chst12a (ENSNBRG00000005067)	C1QTNF6 (ENSNBRG00000005077)	ENSNBRG00000005091	mpst (ENSNBRG00000005135)
Nile tilapia	MODERN SPECIES	16	ENSONIG00000008363	wbp2nl (ENSONIG00000008361)	hebp1 (ENSONIG00000027525)	FMC1 (ENSONIG00000032844)	GRIN2B (ENSONIG00000008357)	ENSONIG00000029047	GSG1 (ENSONIG00000042588)	EMP1 (ENSONIG00000030635)	ENSONIG00000034319	ENSONIG00000008347	actb2 (ENSONIG00000003145)	ENSONIG00000033963	bud31 (ENSONIG00000008487) #20	pdap1 (ENSONIG00000038908) #19	shmt1 (ENSONIG00000008491)	cpsf4 (ENSONIG00000039547) #22	atp5mf (ENSONIG00000008498)	slc29a4a (ENSONIG00000008500)	ENSONIG00000008502	FSCN1 (ENSONIG00000008509)	smurf1 (ENSONIG00000008515) #13	ENSONIG00000040231	wipi2 (ENSONIG00000008520)	MMD2 (ENSONIG00000040581)	ap5z1 (ENSONIG00000008527)	CARD11 (ENSONIG00000008528)	chst12a (ENSONIG00000028097)	ENSONIG00000008535	ENSONIG00000008536	ENSONIG00000030166	mpst (ENSONIG00000008540)
Midas cichlid	MODERN SPECIES	413	TOP3A (ENSACIG00000010065)	ENSACIG00000010051	ENSACIG00000009828	xpnpep3 (ENSACIG00000009775)	st13 (ENSACIG00000009746)	rbx1 (ENSACIG00000009731)	ENSACIG00000009692	rangap1a (ENSACIG00000009654)	ZC3H7B (ENSACIG00000009388)	tefb (ENSACIG00000009347)	TOB2 (ENSACIG00000009336)	ENSACIG00000009326	bud31 (ENSACIG00000009314) #20	pdap1b (ENSACIG00000009293) #19	shmt1 (ENSACIG00000009271)	cpsf4 (ENSACIG00000009248) #22	atp5mf (ENSACIG00000009170)	slc29a4a (ENSACIG00000009092)	TNRC18 (ENSACIG00000008998)	ENSACIG00000008980	FSCN1 (ENSACIG00000008970)	RNF216 (ENSACIG00000008944)	smurf1 (ENSACIG00000008901) #13	ENSACIG00000008555	wipi2 (ENSACIG00000008526)	mmd2a (ENSACIG00000008496)	ap5z1 (ENSACIG00000008455)	CARD11 (ENSACIG00000008397)	chst12a (ENSACIG00000008378)	ENSACIG00000008365	ENSACIG00000008341
Pomacentridae	ANCESTRAL SPECIES	31	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b
Bicolor damselfish	MODERN SPECIES	2158										ENSSPAG00000006020	TOP3A (ENSSPAG00000006033)	smcr8a (ENSSPAG00000006087)	bud31 (ENSSPAG00000006103) #20	pdap1b (ENSSPAG00000006114) #19	shmt1 (ENSSPAG00000006146)	cpsf4 (ENSSPAG00000006174) #22	atp5mf (ENSSPAG00000006191)	slc29a4a (ENSSPAG00000006206)
Pomacentridae_A	ANCESTRAL SPECIES	21	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000166554.b
Amphiprion	ANCESTRAL SPECIES	25	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618	ENSGT00390000001347.i	ENSGT00940000153657.A	ENSGT00940000155497.a.a	ENSGT00940000158365.f.b	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000014300 #20	ENSGT00390000018509.a #19	ENSGT00390000002762.a.b	ENSGT00940000155520 #22	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00950000182960.a.a.b.e.a	ENSGT00950000183157.a.a.b.c	ENSGT00510000048032	ENSGT00940000158690 #13	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000158573	ENSGT00940000156614.b	ENSGT00940000166554.b
Orange clownfish	MODERN SPECIES	5	TOB2 (ENSAPEG00000012405)	tefb (ENSAPEG00000012377)	ZC3H7B (ENSAPEG00000012353)	rangap1a (ENSAPEG00000012296)	ENSAPEG00000012164	rbx1 (ENSAPEG00000012157)	st13 (ENSAPEG00000012108)	xpnpep3 (ENSAPEG00000012099)	EP300 (ENSAPEG00000011954)	cbx7a (ENSAPEG00000011936)	TOP3A (ENSAPEG00000011863)	smcr8a (ENSAPEG00000011852)	bud31 (ENSAPEG00000011830) #20	pdap1b (ENSAPEG00000011801) #19	shmt1 (ENSAPEG00000011740)	cpsf4 (ENSAPEG00000011679) #22	atp5mf (ENSAPEG00000011712)	ENSAPEG00000011672	SLC29A4 (ENSAPEG00000011616)	st13 (ENSAPEG00000011577)	xpnpep3 (ENSAPEG00000011557)	ENSAPEG00000011507	ENSAPEG00000011492	slc29a4a (ENSAPEG00000011458)	ENSAPEG00000011224	ENSAPEG00000011197	FSCN1 (ENSAPEG00000011161)	ENSAPEG00000011134	smurf1 (ENSAPEG00000011048) #13	wipi2 (ENSAPEG00000010987)	mmd2a (ENSAPEG00000010952)
Clown anemonefish	MODERN SPECIES	1054	TOB2 (ENSAOCG00000019128)	tefb (ENSAOCG00000019163)	ZC3H7B (ENSAOCG00000001982)	rangap1a (ENSAOCG00000019232)	ENSAOCG00000019273	rbx1 (ENSAOCG00000019283)	st13 (ENSAOCG00000019326)	xpnpep3 (ENSAOCG00000019344)	EP300 (ENSAOCG00000002684)	cbx7a (ENSAOCG00000019385)	TOP3A (ENSAOCG00000019482)	smcr8a (ENSAOCG00000019504)	bud31 (ENSAOCG00000019512) #20	pdap1b (ENSAOCG00000019535) #19	shmt1 (ENSAOCG00000019565)	cpsf4 (ENSAOCG00000019616) #22	atp5mf (ENSAOCG00000019630)	slc29a4a (ENSAOCG00000019686)
Spiny chromis	MODERN SPECIES	803																cpsf4 (ENSAPOG00000004921) #22	atp5mf (ENSAPOG00000004869)	ENSAPOG00000004853	slc29a4a (ENSAPOG00000004839)	ENSAPOG00000004811	ENSAPOG00000004765	FSCN1 (ENSAPOG00000004744)	ENSAPOG00000004727	smurf1 (ENSAPOG00000004687) #13	ENSAPOG00000004645	wipi2 (ENSAPOG00000004535)	MMD2 (ENSAPOG00000004480)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	2	znf598 (ENSECRG00000011870)	syngr3b (ENSECRG00000011861)	gfer (ENSECRG00000011850)	drg2 (ENSECRG00000011829)	ENSECRG00000011804	alkbh5 (ENSECRG00000011782)	LLGL1 (ENSECRG00000011744)	flii (ENSECRG00000011687)	MIEF2 (ENSECRG00000011655)	TOP3A (ENSECRG00000011633)	smcr8a (ENSECRG00000011612)	shmt1 (ENSECRG00000011583)	pdap1b (ENSECRG00000011558) #19	bud31 (ENSECRG00000011536) #20	PTCD1 (ENSECRG00000011515) #21	cpsf4 (ENSECRG00000011433) #22	atp5mf (ENSECRG00000011385)	slc29a4a (ENSECRG00000011361)	ENSECRG00000011335	fbxl18 (ENSECRG00000011307)	ACTB (ENSECRG00000011262)	FSCN1 (ENSECRG00000020051)	RNF216 (ENSECRG00000020006)	ENSECRG00000019969	ENSECRG00000019928	smurf1 (ENSECRG00000019815) #13	kpna7 (ENSECRG00000019755) #14	ENSECRG00000019674	arpc1a (ENSECRG00000019611) #17	arpc1b (ENSECRG00000019549) #18	wipi2 (ENSECRG00000019499)
Reedfish	MODERN SPECIES	5	ENSECRG00000019155	cep131 (ENSECRG00000019069)	ENSECRG00000019015	ENSECRG00000018975	AATK (ENSECRG00000018424)	baiap2a (ENSECRG00000018167) ##9	chmp6b (ENSECRG00000018067)	ABCA5 (ENSECRG00000017978)	KIF19 (ENSECRG00000017919)	ENSECRG00000017766	ENSECRG00000017704	ttyh2l (ENSECRG00000017658)	RPL38 (ENSECRG00000017630)	SDK2 (ENSECRG00000017574)	CDC42EP4 (ENSECRG00000017535)	ENSECRG00000017466 #22	ENSECRG00000017416	cyth1b (ENSECRG00000016701)	PGS1 (ENSECRG00000016505)	socs3b (ENSECRG00000016487)	tha1 (ENSECRG00000016457)	TMEM235 (ENSECRG00000016413)	birc5a (ENSECRG00000016393)	FAAP100 (ENSECRG00000016359)	fscn2b (ENSECRG00000016263)	ENSECRG00000016211	SLC38A10 (ENSECRG00000016093)	ndufaf8 (ENSECRG00000016031)	TEPSIN (ENSECRG00000015992)	USP36 (ENSECRG00000015940)	ENSECRG00000015918