Euarchontoglires_A ANCESTRAL SPECIES 5 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00510000046843.b #21 ENSGT00430000032851 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 Glires ANCESTRAL SPECIES 4 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00510000046843.b #21 ENSGT00430000032851 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 Rodentia ANCESTRAL SPECIES 5 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00510000046843.b #21 ENSGT00430000032851 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 Rodentia_A ANCESTRAL SPECIES 4 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00510000046843.b #21 ENSGT00430000032851 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 ENSGT00640000091574 Hystricomorpha ANCESTRAL SPECIES 9 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983.e.a ##16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b.f ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00510000046843.b #21 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 ENSGT00640000091574 Hystricomorpha_a ANCESTRAL SPECIES 7 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983.e.a ##16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b.f ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00510000046843.b #21 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 ENSGT00640000091574 Guinea pig MODERN SPECIES 9 VEZT (ENSCPOG00000009336) #7 FGD6 (ENSCPOG00000012303) #8 NR2C1 (ENSCPOG00000007507) #9 NDUFA12 (ENSCPOG00000010154) #10 ENSCPOG00000019272 #11 TMCC3 (ENSCPOG00000034352) #12 CEP83 (ENSCPOG00000008997) #13 PLXNC1 (ENSCPOG00000008984) #14 CRADD (ENSCPOG00000039871) #15 SOCS2 (ENSCPOG00000008235) #16 ENSCPOG00000030015 #17 ENSCPOG00000008581 #18 ENSCPOG00000008578 #19 EEA1 (ENSCPOG00000014506) #20 PLEKHG7 (ENSCPOG00000014503) #21 BTG1 (ENSCPOG00000040699) #22 DCN (ENSCPOG00000034660) #23 LUM (ENSCPOG00000036998) #24 KERA (ENSCPOG00000000675) #25 EPYC (ENSCPOG00000006137) #26 CCER1 (ENSCPOG00000023502) #27 ENSCPOG00000040691 #28 ATP2B1 (ENSCPOG00000015527) #29 POC1B (ENSCPOG00000015525) #30 DUSP6 (ENSCPOG00000030214) #31 KITLG (ENSCPOG00000031249) #32 TMTC3 (ENSCPOG00000012492) #33 CEP290 (ENSCPOG00000033255) #34 C12orf29 (ENSCPOG00000039127) #35 C12orf50 (ENSCPOG00000012468) #36 MGAT4C (ENSCPOG00000013992) #37 Hystricomorpha_b ANCESTRAL SPECIES 13 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983.e.a ##16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b.f ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00510000046843.b #21 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 ENSGT00640000091574 Long-tailed chinchilla MODERN SPECIES 112 VEZT (ENSCLAG00000011358) #7 FGD6 (ENSCLAG00000010121) #8 NR2C1 (ENSCLAG00000007935) #9 NDUFA12 (ENSCLAG00000004709) #10 TMCC3 (ENSCLAG00000007987) #12 CEP83 (ENSCLAG00000007562) #13 PLXNC1 (ENSCLAG00000015691) #14 CRADD (ENSCLAG00000015937) #15 SOCS2 (ENSCLAG00000007099) ##16 MRPL42 (ENSCLAG00000005421) #17 UBE2N (ENSCLAG00000005227) ##18 ENSCLAG00000012848 #19 ENSCLAG00000011699 EEA1 (ENSCLAG00000006113) #20 ENSCLAG00000005133 #21 BTG1 (ENSCLAG00000004687) #22 DCN (ENSCLAG00000011478) #23 LUM (ENSCLAG00000009704) #24 KERA (ENSCLAG00000008374) #25 EPYC (ENSCLAG00000008177) #26 CCER1 (ENSCLAG00000014412) #27 ATP2B1 (ENSCLAG00000009579) #29 POC1B (ENSCLAG00000006831) #30 DUSP6 (ENSCLAG00000005856) #31 KITLG (ENSCLAG00000006139) #32 TMTC3 (ENSCLAG00000005406) #33 CEP290 (ENSCLAG00000006047) #34 C12orf29 (ENSCLAG00000004653) #35 C12orf50 (ENSCLAG00000006991) #36 MGAT4C (ENSCLAG00000008726) #37 NTS (ENSCLAG00000007844) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 8 ENSHGLG00000045053 CEP83 (ENSHGLG00000005240) #13 ENSHGLG00000014443 ENSHGLG00000042288 PLXNC1 (ENSHGLG00000005788) #14 CRADD (ENSHGLG00000040480) #15 ENSHGLG00000006324 ##16 ENSHGLG00000042799 MRPL42 (ENSHGLG00000007399) #17 ENSHGLG00000008071 ##18 ENSHGLG00000045354 #19 ENSHGLG00000001665 EEA1 (ENSHGLG00000004855) #20 PLEKHG7 (ENSHGLG00000037576) #21 ENSHGLG00000042071 ENSHGLG00000007207 #22 DCN (ENSHGLG00000008166) #23 LUM (ENSHGLG00000009566) #24 KERA (ENSHGLG00000010458) #25 ENSHGLG00000004737 #26 ENSHGLG00000046116 ENSHGLG00000004778 ENSHGLG00000042775 ENSHGLG00000005908 ENSHGLG00000007341 #29 ENSHGLG00000040482 ENSHGLG00000014556 #30 GALNT4 (ENSHGLG00000040214) ENSHGLG00000047274 ENSHGLG00000045262 ENSHGLG00000042430 Naked mole-rat female MODERN SPECIES 30 PGGHG (ENSHGLG00000015446) ENSHGLG00000017176 PSMD13 (ENSHGLG00000017609) SIRT3 (ENSHGLG00000017649) RIC8A (ENSHGLG00000018718) BET1L (ENSHGLG00000049253) ODF3 (ENSHGLG00000017967) ENSHGLG00000017977 ENSHGLG00000008863 ENSHGLG00000000614 ENSHGLG00000042162 ENSHGLG00000000399 ENSHGLG00000009321 ENSHGLG00000009379 ENSHGLG00000048422 ENSHGLG00000004775 #22 ENSHGLG00000036302 ENSHGLG00000036746 ENSHGLG00000013205 VGLL2 (ENSHGLG00000048393) RFX6 (ENSHGLG00000019573) GPRC6A (ENSHGLG00000036750) ENSHGLG00000008946 KPNA5 (ENSHGLG00000007645) ENSHGLG00000009896 ENSHGLG00000002525 ENSHGLG00000049438 ENSHGLG00000035661 ENSHGLG00000050402 ENSHGLG00000005874 ENSHGLG00000016052 Sciuridae ANCESTRAL SPECIES 14 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491.e #17 ENSGT00540000070023.d #18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00510000046843.b #21 ENSGT00430000032851 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 ENSGT00640000091574 Eurasian red squirrel MODERN SPECIES 14 TMCC3 (ENSSVLG00005004280) #12 CEP83 (ENSSVLG00005004243) #13 PLXNC1 (ENSSVLG00005004224) #14 CRADD (ENSSVLG00005004194) #15 SOCS2 (ENSSVLG00005004170) #16 ENSSVLG00005004158 ENSSVLG00005004136 #17 ENSSVLG00005004122 UBE2N (ENSSVLG00005004108) ##18 ENSSVLG00005004086 #19 ENSSVLG00005004071 ENSSVLG00005004057 EEA1 (ENSSVLG00005004013) #20 ENSSVLG00005003978 #21 ENSSVLG00005003961 BTG1 (ENSSVLG00005003939) #22 DCN (ENSSVLG00005003889) #23 LUM (ENSSVLG00005003829) #24 KERA (ENSSVLG00005003814) #25 EPYC (ENSSVLG00005003799) #26 CCER1 (ENSSVLG00005003787) #27 ENSSVLG00005003775 ATP2B1 (ENSSVLG00005003665) #29 POC1B (ENSSVLG00005003557) #30 DUSP6 (ENSSVLG00005003537) #31 ENSSVLG00005003526 KITLG (ENSSVLG00005003404) #32 TMTC3 (ENSSVLG00005003348) #33 CEP290 (ENSSVLG00005003075) #34 ENSSVLG00005002975 #35 C12orf50 (ENSSVLG00005002902) #36 Marmotini ANCESTRAL SPECIES 4 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491.e.a #17 ENSGT00540000070023.d #18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00510000046843.b #21 ENSGT00430000032851 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00390000009130.a.a.b.h ENSGT00940000155352 #37 Alpin marmot MODERN SPECIES 11 FGD6 (ENSMMMG00000020186) #8 NR2C1 (ENSMMMG00000020203) #9 NDUFA12 (ENSMMMG00000020249) #10 TMCC3 (ENSMMMG00000020256) #12 ENSMMMG00000020271 CEP83 (ENSMMMG00000020275) #13 PLXNC1 (ENSMMMG00000020295) #14 CRADD (ENSMMMG00000020454) #15 SOCS2 (ENSMMMG00000020455) #16 ENSMMMG00000020461 #17 ENSMMMG00000020474 ##18 ENSMMMG00000020505 #19 EEA1 (ENSMMMG00000020523) #20 ENSMMMG00000020545 #21 ENSMMMG00000020551 BTG1 (ENSMMMG00000020559) #22 DCN (ENSMMMG00000020572) #23 LUM (ENSMMMG00000020574) #24 KERA (ENSMMMG00000020583) #25 EPYC (ENSMMMG00000020588) #26 CCER1 (ENSMMMG00000020597) #27 ATP2B1 (ENSMMMG00000020615) #29 POC1B (ENSMMMG00000020630) #30 DUSP6 (ENSMMMG00000020660) #31 KITLG (ENSMMMG00000000026) #32 ENSMMMG00000000046 TMTC3 (ENSMMMG00000000074) #33 CEP290 (ENSMMMG00000000165) #34 C12orf29 (ENSMMMG00000000596) #35 C12orf50 (ENSMMMG00000000632) #36 ENSMMMG00000000830 Marmotini_b ANCESTRAL SPECIES 3 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491.e.a #17 ENSGT00540000070023.d #18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00510000046843.b #21 ENSGT00430000032851 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00390000009130.a.a.b.h ENSGT00940000155352 #37 Arctic ground squirrel MODERN SPECIES 6 VEZT (ENSUPAG00010006572) #7 FGD6 (ENSUPAG00010006610) #8 NR2C1 (ENSUPAG00010006765) #9 NDUFA12 (ENSUPAG00010006899) #10 TMCC3 (ENSUPAG00010006912) #12 CEP83 (ENSUPAG00010006959) #13 PLXNC1 (ENSUPAG00010006977) #14 CRADD (ENSUPAG00010007012) #15 SOCS2 (ENSUPAG00010007030) #16 ENSUPAG00010007046 #17 ENSUPAG00010007081 #18 ENSUPAG00010007093 #19 EEA1 (ENSUPAG00010007100) #20 ENSUPAG00010007127 #21 ENSUPAG00010007147 BTG1 (ENSUPAG00010007152) #22 DCN (ENSUPAG00010007176) #23 LUM (ENSUPAG00010007216) #24 KERA (ENSUPAG00010007225) #25 EPYC (ENSUPAG00010007237) #26 CCER1 (ENSUPAG00010007261) #27 ATP2B1 (ENSUPAG00010007267) #29 POC1B (ENSUPAG00010007342) #30 DUSP6 (ENSUPAG00010007403) #31 KITLG (ENSUPAG00010007417) #32 TMTC3 (ENSUPAG00010007444) #33 CEP290 (ENSUPAG00010007458) #34 C12orf29 (ENSUPAG00010007666) #35 C12orf50 (ENSUPAG00010007681) #36 ENSUPAG00010007903 Squirrel DUPLICATION Squirrel MODERN SPECIES 591 ENSSTOG00000019635 #22 Squirrel MODERN SPECIES 107 USP44 (ENSSTOG00000023944) METAP2 (ENSSTOG00000006960) VEZT (ENSSTOG00000016388) #7 FGD6 (ENSSTOG00000016385) #8 NR2C1 (ENSSTOG00000027488) #9 TMCC3 (ENSSTOG00000015074) #12 CEP83 (ENSSTOG00000000737) #13 PLXNC1 (ENSSTOG00000000728) #14 ENSSTOG00000021839 CRADD (ENSSTOG00000012496) #15 SOCS2 (ENSSTOG00000012493) #16 MRPL42 (ENSSTOG00000026544) #17 ENSSTOG00000002166 #18 ENSSTOG00000020306 #19 EEA1 (ENSSTOG00000001792) #20 ENSSTOG00000010616 #22 DCN (ENSSTOG00000008917) #23 LUM (ENSSTOG00000008915) #24 KERA (ENSSTOG00000011961) #25 EPYC (ENSSTOG00000023957) #26 CCER1 (ENSSTOG00000031809) #27 ATP2B1 (ENSSTOG00000016072) #29 POC1B (ENSSTOG00000006306) #30 DUSP6 (ENSSTOG00000006279) #31 KITLG (ENSSTOG00000031402) #32 ENSSTOG00000031881 TMTC3 (ENSSTOG00000004530) #33 CEP290 (ENSSTOG00000004444) #34 C12orf29 (ENSSTOG00000021949) #35 C12orf50 (ENSSTOG00000004396) #36 ENSSTOG00000032276 Rodentia_B ANCESTRAL SPECIES 3 ENSGT00940000160526 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 Myomorpha ANCESTRAL SPECIES 2 ENSGT00940000160526 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 42 Ccdc38 (ENSJJAG00000013539) ENSJJAG00000011272 Ntn4 (ENSJJAG00000009845) ENSJJAG00000016408 Vezt (ENSJJAG00000023035) #7 Fgd6 (ENSJJAG00000015874) #8 Nr2c1 (ENSJJAG00000017174) #9 Ndufa12 (ENSJJAG00000008129) #10 ENSJJAG00000001738 Tmcc3 (ENSJJAG00000016753) #12 Cep83 (ENSJJAG00000018283) #13 ENSJJAG00000011221 #14 Cradd (ENSJJAG00000019223) #15 ENSJJAG00000011721 ##18 Eea1 (ENSJJAG00000011838) #20 ENSJJAG00000003396 #22 Dcn (ENSJJAG00000018394) #23 Lum (ENSJJAG00000016615) #24 Kera (ENSJJAG00000010866) #25 Epyc (ENSJJAG00000015074) #26 Atp2b1 (ENSJJAG00000014291) #29 Poc1b (ENSJJAG00000013503) #30 ENSJJAG00000005687 #31 Kitl (ENSJJAG00000021051) #32 Tmtc3 (ENSJJAG00000013597) #33 Cep290 (ENSJJAG00000002440) #34 4930430F08Rik (ENSJJAG00000013569) #35 1700017N19Rik (ENSJJAG00000023823) #36 Mgat4c (ENSJJAG00000021989) #37 Nts (ENSJJAG00000014653) Rassf9 (ENSJJAG00000013251) Lesser Egyptian jerboa MODERN SPECIES 42 Ribc2 (ENSJJAG00000021212) Fbln1 (ENSJJAG00000022397) Atxn10 (ENSJJAG00000021073) Wnt7b (ENSJJAG00000019892) Ppara (ENSJJAG00000020917) Cdpf1 (ENSJJAG00000020066) Pkdrej (ENSJJAG00000021330) Ttc38 (ENSJJAG00000021274) Gtse1 (ENSJJAG00000020084) Trmu (ENSJJAG00000000667) Celsr1 (ENSJJAG00000023159) Gramd4 (ENSJJAG00000022516) Cerk (ENSJJAG00000022131) Tbc1d22a (ENSJJAG00000022725) Tafa5 (ENSJJAG00000022146) ENSJJAG00000022456 #22 ENSJJAG00000020987 Brd1 (ENSJJAG00000021894) Alg12 (ENSJJAG00000021461) Creld2 (ENSJJAG00000011752) Pim3 (ENSJJAG00000023071) Ttll8 (ENSJJAG00000011488) Mlc1 (ENSJJAG00000017316) Mov10l1 (ENSJJAG00000007026) Panx2 (ENSJJAG00000022586) Trabd (ENSJJAG00000002026) Selenoo (ENSJJAG00000011247) Tubgcp6 (ENSJJAG00000001268) ENSJJAG00000010762 Mapk12 (ENSJJAG00000023055) Mapk11 (ENSJJAG00000022908) Muroidea ANCESTRAL SPECIES 5 ENSGT00940000160526 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 Upper Galilee mountains blind mole rat MODERN SPECIES 512 ENSNGAG00000024338 #15 Socs2 (ENSNGAG00000013240) #16 Mrpl42 (ENSNGAG00000000717) #17 Ube2n (ENSNGAG00000013689) ##18 Nudt4 (ENSNGAG00000023320) #19 ENSNGAG00000012929 ENSNGAG00000006958 Eea1 (ENSNGAG00000024349) #20 ENSNGAG00000009583 Btg1 (ENSNGAG00000024134) #22 Dcn (ENSNGAG00000001057) #23 Lum (ENSNGAG00000010684) #24 Kera (ENSNGAG00000012487) #25 Epyc (ENSNGAG00000002171) #26 Ccer1 (ENSNGAG00000005210) #27 Atp2b1 (ENSNGAG00000013753) #29 Poc1b (ENSNGAG00000019321) #30 Dusp6 (ENSNGAG00000023285) #31 ENSNGAG00000004971 Kitl (ENSNGAG00000006563) #32 Tmtc3 (ENSNGAG00000015646) #33 Cep290 (ENSNGAG00000018519) #34 4930430F08Rik (ENSNGAG00000022800) #35 1700017N19Rik (ENSNGAG00000022882) #36 Muroidea_A DUPLICATION Muroidea_A DUPLICATION Muroidea_A ANCESTRAL SPECIES 22 ENSGT00940000160526 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00950000182952.C.xc.a #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 Cricetidae ANCESTRAL SPECIES 21 ENSGT00940000160526 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.d.s #18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00950000182952.C.xc.a #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 ENSGT00640000091574 Cricetidae_B ANCESTRAL SPECIES 29 ENSGT00940000160526 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.d.s #18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00950000182952.C.xc.a #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 ENSGT00640000091574 Prairie vole MODERN SPECIES 10 Usp44 (ENSMOCG00000020189) ENSMOCG00000013555 ENSMOCG00000020971 Vezt (ENSMOCG00000000685) #7 Fgd6 (ENSMOCG00000017458) #8 Nr2c1 (ENSMOCG00000006925) #9 Ndufa12 (ENSMOCG00000013678) #10 Tmcc3 (ENSMOCG00000012369) #12 Cep83 (ENSMOCG00000010672) #13 Plxnc1 (ENSMOCG00000014781) #14 Cradd (ENSMOCG00000000329) #15 ENSMOCG00000019732 #16 ENSMOCG00000013541 #17 Nudt4 (ENSMOCG00000003024) #19 Eea1 (ENSMOCG00000008700) #20 Btg1 (ENSMOCG00000012463) #22 Dcn (ENSMOCG00000011845) #23 Lum (ENSMOCG00000001159) #24 Kera (ENSMOCG00000020045) #25 Epyc (ENSMOCG00000008447) #26 Ccer1 (ENSMOCG00000009249) #27 Atp2b1 (ENSMOCG00000012513) #29 Poc1b (ENSMOCG00000015822) #30 Dusp6 (ENSMOCG00000011753) #31 ENSMOCG00000003349 Kitl (ENSMOCG00000018911) #32 Tmtc3 (ENSMOCG00000007538) #33 Cep290 (ENSMOCG00000010037) #34 4930430F08Rik (ENSMOCG00000021234) #35 1700017N19Rik (ENSMOCG00000017688) #36 Mgat4c (ENSMOCG00000012409) #37 Northern American deer mouse MODERN SPECIES 9 ENSPEMG00000027065 Fgd6 (ENSPEMG00000000975) #8 Nr2c1 (ENSPEMG00000011087) #9 Ndufa12 (ENSPEMG00000023653) #10 Tmcc3 (ENSPEMG00000022879) #12 Cep83 (ENSPEMG00000019426) #13 Plxnc1 (ENSPEMG00000019499) #14 ENSPEMG00000021950 Cradd (ENSPEMG00000013349) #15 Socs2 (ENSPEMG00000027596) #16 ENSPEMG00000020562 #17 ENSPEMG00000029432 #18 Nudt4 (ENSPEMG00000021026) #19 Eea1 (ENSPEMG00000010629) #20 ENSPEMG00000003344 Btg1 (ENSPEMG00000030029) #22 Dcn (ENSPEMG00000019308) #23 Lum (ENSPEMG00000019303) #24 Kera (ENSPEMG00000013253) #25 Epyc (ENSPEMG00000019173) #26 Ccer1 (ENSPEMG00000019732) #27 ENSPEMG00000019550 #29 Poc1b (ENSPEMG00000020051) #30 Dusp6 (ENSPEMG00000026221) #31 Kitl (ENSPEMG00000019688) #32 Tmtc3 (ENSPEMG00000000749) #33 Cep290 (ENSPEMG00000008348) #34 4930430F08Rik (ENSPEMG00000016254) #35 1700017N19Rik (ENSPEMG00000010447) #36 Slc6a15 (ENSPEMG00000010154) Lrriq1 (ENSPEMG00000012353) Cricetinae ANCESTRAL SPECIES 22 ENSGT00940000160526 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.a.a ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00950000182952.C.xc.a #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 ENSGT00640000091574 Chinese hamster chok1gshd MODERN SPECIES 83 Vezt (ENSCGRG00001016545) #7 Fgd6 (ENSCGRG00001022120) #8 Nr2c1 (ENSCGRG00001021503) #9 Ndufa12 (ENSCGRG00001023632) #10 Tmcc3 (ENSCGRG00001011362) #12 Cep83 (ENSCGRG00001017799) #13 Plxnc1 (ENSCGRG00001021705) #14 Cradd (ENSCGRG00001005469) #15 Socs2 (ENSCGRG00001007954) #16 ENSCGRG00001012694 #17 ENSCGRG00001014867 ##18 Nudt4 (ENSCGRG00001016406) #19 Gm17728 (ENSCGRG00001019515) ENSCGRG00001022131 Eea1 (ENSCGRG00001007706) #20 Btg1 (ENSCGRG00001017332) #22 Dcn (ENSCGRG00001019795) #23 Lum (ENSCGRG00001024041) #24 Kera (ENSCGRG00001024292) #25 Epyc (ENSCGRG00001000236) #26 Ccer1 (ENSCGRG00001007933) #27 Atp2b1 (ENSCGRG00001018626) #29 Poc1b (ENSCGRG00001015662) #30 ENSCGRG00001009510 Dusp6 (ENSCGRG00001011335) #31 Kitl (ENSCGRG00001016450) #32 Tmtc3 (ENSCGRG00001019153) #33 Cep290 (ENSCGRG00001020423) #34 4930430F08Rik (ENSCGRG00001019742) #35 1700017N19Rik (ENSCGRG00001014381) #36 Mgat4c (ENSCGRG00001006307) #37 Golden Hamster MODERN SPECIES 628 Ntn4 (ENSMAUG00000004210) Usp44 (ENSMAUG00000000679) ENSMAUG00000014524 Vezt (ENSMAUG00000011049) #7 Nr2c1 (ENSMAUG00000005656) #9 ENSMAUG00000009984 #10 Tmcc3 (ENSMAUG00000001274) #12 Cep83 (ENSMAUG00000018689) #13 Plxnc1 (ENSMAUG00000021960) #14 Cradd (ENSMAUG00000022216) #15 Socs2 (ENSMAUG00000011777) #16 ENSMAUG00000018130 #17 ENSMAUG00000003983 ##18 ENSMAUG00000008245 #19 Eea1 (ENSMAUG00000008757) #20 Btg1 (ENSMAUG00000020545) #22 Dcn (ENSMAUG00000021986) #23 Lum (ENSMAUG00000014903) #24 Kera (ENSMAUG00000022158) #25 Epyc (ENSMAUG00000017349) #26 Ccer1 (ENSMAUG00000009078) #27 Atp2b1 (ENSMAUG00000009310) #29 Poc1b (ENSMAUG00000021507) #30 Kitl (ENSMAUG00000016386) #32 Tmtc3 (ENSMAUG00000020385) #33 Cep290 (ENSMAUG00000022146) #34 4930430F08Rik (ENSMAUG00000013438) #35 ENSMAUG00000008756 #36 ENSMAUG00000004735 #37 Nts (ENSMAUG00000013146) Rassf9 (ENSMAUG00000012420) Murinae ANCESTRAL SPECIES 22 ENSGT00940000160526 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00950000182952.C.xc.a #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 ENSGT00940000155352 #37 Mus ANCESTRAL SPECIES 23 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00860000135975 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00950000182952.C.xc.a #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00900000143579 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00940000155526.b ENSGT00390000006813.t ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 Mus_A ANCESTRAL SPECIES 11 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00860000135975 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491.m #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00390000009724.l.i.b.a ENSGT00950000182952.C.xc.a #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00900000143783 ENSGT00730000111529 #27 ENSGT00900000143579 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00940000155526.b ENSGT00390000006813.t ENSGT00390000018272 #32 ENSGT00940000157538 #33 Mus_B ANCESTRAL SPECIES 10 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00860000135975 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491.m.b #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00390000009724.l.i.b.a.a.a ENSGT00950000182952.C.xc.a #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00900000143783 ENSGT00730000111529 #27 ENSGT00900000143579 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00940000155526.b ENSGT00390000006813.t ENSGT00390000018272 #32 ENSGT00940000157538 #33 Mouse MODERN SPECIES 1 Vezt (ENSMUSG00000036099) #7 Fgd6 (ENSMUSG00000020021) #8 Nr2c1 (ENSMUSG00000005897) #9 Ndufa12 (ENSMUSG00000020022) #10 Tmcc3 (ENSMUSG00000020023) #12 Cep83 (ENSMUSG00000020024) #13 Plxnc1 (ENSMUSG00000074785) #14 Cradd (ENSMUSG00000045867) #15 Socs2 (ENSMUSG00000020027) #16 Mrpl42 (ENSMUSG00000062981) #17 Ube2n (ENSMUSG00000074781) ##18 Nudt4 (ENSMUSG00000020029) #19 Anapc15-ps (ENSMUSG00000074780) Eea1 (ENSMUSG00000036499) #20 Gm5426 (ENSMUSG00000096486) Btg1 (ENSMUSG00000036478) #22 Dcn (ENSMUSG00000019929) #23 Lum (ENSMUSG00000036446) #24 Kera (ENSMUSG00000019932) #25 Epyc (ENSMUSG00000019936) #26 Ccer1 (ENSMUSG00000047025) #27 Atp2b1 (ENSMUSG00000019943) #29 Poc1b (ENSMUSG00000019952) #30 Galnt4 (ENSMUSG00000090035) Dusp6 (ENSMUSG00000019960) #31 Csl (ENSMUSG00000046934) Kitl (ENSMUSG00000019966) #32 Gm4301 (ENSMUSG00000094314) Gm4302 (ENSMUSG00000091101) Gm4303 (ENSMUSG00000112931) Gm4305 (ENSMUSG00000112856) Mus_C ANCESTRAL SPECIES 7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00860000135975 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00390000014448 #15 ENSGT00940000157983 #16 ENSGT00390000010491.m.b #17 ENSGT00540000070023.c.a.a ##18 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00390000009724.l.i.b.a.b ENSGT00950000182952.C.xc.a #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00900000143783 ENSGT00730000111529 #27 ENSGT00900000143579 ENSGT00940000158686 #29 ENSGT00940000160413 #30 ENSGT00940000163607 ENSGT00940000158342.b #31 ENSGT00940000155526.b ENSGT00390000006813.t ENSGT00390000018272 #32 ENSGT00940000157538 #33 Steppe mouse MODERN SPECIES 3422 Tmcc3 (ENSMSIG00000016287) #12 Cep83 (ENSMSIG00000016257) #13 Plxnc1 (ENSMSIG00000016141) #14 Cradd (ENSMSIG00000016116) #15 ENSMSIG00000016093 ENSMSIG00000016056 #16 ENSMSIG00000016042 Mrpl42 (ENSMSIG00000015996) #17 ENSMSIG00000015978 ##18 ENSMSIG00000015960 #19 ENSMSIG00000015942 ENSMSIG00000015896 Eea1 (ENSMSIG00000015697) #20 Gm5426 (ENSMSIG00000015678) ENSMSIG00000015647 Btg1 (ENSMSIG00000015631) #22 ENSMSIG00000015628 Dcn (ENSMSIG00000015595) #23 Lum (ENSMSIG00000015574) #24 Kera (ENSMSIG00000015562) #25 Epyc (ENSMSIG00000015524) #26 Ccer1 (ENSMSIG00000015509) #27 ENSMSIG00000015503 Atp2b1 (ENSMSIG00000015351) #29 Poc1b (ENSMSIG00000015203) #30 Dusp6 (ENSMSIG00000015196) #31 ENSMSIG00000015181 ENSMSIG00000015162 ENSMSIG00000015150 Csl (ENSMSIG00000015137) Kitl (ENSMSIG00000015054) #32 Ryukyu mouse MODERN SPECIES 1 Fgd6 (MGP_CAROLIEiJ_G0015740) #8 Nr2c1 (MGP_CAROLIEiJ_G0015741) #9 Ndufa12 (MGP_CAROLIEiJ_G0015742) #10 MGP_CAROLIEiJ_G0015743 Tmcc3 (MGP_CAROLIEiJ_G0015744) #12 Cep83 (MGP_CAROLIEiJ_G0015745) #13 Plxnc1 (MGP_CAROLIEiJ_G0015746) #14 Cradd (MGP_CAROLIEiJ_G0015747) #15 Socs2 (MGP_CAROLIEiJ_G0015748) #16 MGP_CAROLIEiJ_G0015749 Mrpl42 (MGP_CAROLIEiJ_G0015750) #17 Ube2n (MGP_CAROLIEiJ_G0015751) ##18 Nudt4 (MGP_CAROLIEiJ_G0015752) #19 Eea1 (MGP_CAROLIEiJ_G0015753) #20 MGP_CAROLIEiJ_G0015754 Btg1 (MGP_CAROLIEiJ_G0015755) #22 Dcn (MGP_CAROLIEiJ_G0015756) #23 Lum (MGP_CAROLIEiJ_G0015757) #24 Kera (MGP_CAROLIEiJ_G0015758) #25 Epyc (MGP_CAROLIEiJ_G0015759) #26 MGP_CAROLIEiJ_G0015760 Ccer1 (MGP_CAROLIEiJ_G0015761) #27 Atp2b1 (MGP_CAROLIEiJ_G0015762) #29 Poc1b (MGP_CAROLIEiJ_G0015763) #30 Galnt4 (MGP_CAROLIEiJ_G0015764) Dusp6 (MGP_CAROLIEiJ_G0015765) #31 MGP_CAROLIEiJ_G0015766 Csl (MGP_CAROLIEiJ_G0015767) Kitl (MGP_CAROLIEiJ_G0015768) #32 Tmtc3 (MGP_CAROLIEiJ_G0015769) #33 Cep290 (MGP_CAROLIEiJ_G0015770) #34 Shrew mouse MODERN SPECIES 22 Metap2 (MGP_PahariEiJ_G0031347) Vezt (MGP_PahariEiJ_G0031346) #7 Fgd6 (MGP_PahariEiJ_G0031345) #8 Nr2c1 (MGP_PahariEiJ_G0031344) #9 Ndufa12 (MGP_PahariEiJ_G0031343) #10 MGP_PahariEiJ_G0031342 Tmcc3 (MGP_PahariEiJ_G0031341) #12 Cep83 (MGP_PahariEiJ_G0031340) #13 Plxnc1 (MGP_PahariEiJ_G0031339) #14 Cradd (MGP_PahariEiJ_G0031338) #15 MGP_PahariEiJ_G0031337 #16 MGP_PahariEiJ_G0031336 #16 Mrpl42 (MGP_PahariEiJ_G0031335) #17 Ube2n (MGP_PahariEiJ_G0031334) ##18 Eea1 (MGP_PahariEiJ_G0031333) #20 Btg1 (MGP_PahariEiJ_G0031332) #22 Dcn (MGP_PahariEiJ_G0031331) #23 Lum (MGP_PahariEiJ_G0031330) #24 Kera (MGP_PahariEiJ_G0031329) #25 Epyc (MGP_PahariEiJ_G0031328) #26 Ccer1 (MGP_PahariEiJ_G0031327) #27 MGP_PahariEiJ_G0031326 Atp2b1 (MGP_PahariEiJ_G0031325) #29 Galnt4 (MGP_PahariEiJ_G0031324) Poc1b (MGP_PahariEiJ_G0031323) #30 Dusp6 (MGP_PahariEiJ_G0031322) #31 MGP_PahariEiJ_G0031321 Csl (MGP_PahariEiJ_G0031320) Kitl (MGP_PahariEiJ_G0031319) #32 Tmtc3 (MGP_PahariEiJ_G0031318) #33 Cep290 (MGP_PahariEiJ_G0031317) #34 Rat MODERN SPECIES 17 Fgd6 (ENSRNOG00000054515) #8 Nr2c1 (ENSRNOG00000006983) #9 Ndufa12 (ENSRNOG00000007407) #10 Tmcc3 (ENSRNOG00000007713) #12 LOC100363642 (ENSRNOG00000007859) #13 Plxnc1 (ENSRNOG00000007970) #14 Cradd (ENSRNOG00000008507) #15 LOC103690821 (ENSRNOG00000050393) Socs2 (ENSRNOG00000008965) #16 Mrpl42 (ENSRNOG00000042740) #17 Ube2n (ENSRNOG00000058053) ##18 Nudt4 (ENSRNOG00000009094) #19 AABR07056686.1 (ENSRNOG00000021688) ENSRNOG00000063295 Eea1 (ENSRNOG00000021681) #20 Btg1 (ENSRNOG00000004284) #22 ENSRNOG00000068905 Dcn (ENSRNOG00000004554) #23 Lum (ENSRNOG00000004610) #24 Kera (ENSRNOG00000004635) #25 Epyc (ENSRNOG00000004717) #26 Ccer1 (ENSRNOG00000004875) #27 Atp2b1 (ENSRNOG00000004026) #29 Poc1b (ENSRNOG00000024450) #30 ENSRNOG00000069237 Dusp6 (ENSRNOG00000023896) #31 ENSRNOG00000067092 Kitlg (ENSRNOG00000005386) #32 Tmtc3 (ENSRNOG00000006749) #33 Cep290 (ENSRNOG00000056458) #34 RGD1307947 (ENSRNOG00000006973) #35 Muroidea_A ANCESTRAL SPECIES 7 ENSGT00710000106792.g ENSGT00940000156123.b ENSGT01050000245360 ENSGT00940000155145.e ENSGT00550000074964.i.a ENSGT00940000155339 ENSGT00950000182899.B.b ENSGT00940000161768.B ENSGT01030000234579.B.a ENSGT00940000160471 ENSGT00940000157481 ENSGT00940000163385 ENSGT00920000149445 ENSGT00940000166354 ENSGT00940000154287.a.h ENSGT00950000182952.C.xc.b #22 ENSGT01050000245028.C ENSGT01050000245028.A ENSGT00520000058743 ENSGT00390000016292.g.a.a ENSGT00390000007560 ENSGT00390000003444 ENSGT00940000160787 ENSGT00390000017146.a ENSGT00390000014814.b.s ENSGT00950000183003.a.a.a.b ENSGT00940000158026 ENSGT00940000157256 ENSGT00940000155075.a.b ENSGT00390000002197 ENSGT00940000154400.b.d.b Cricetidae ANCESTRAL SPECIES 8 ENSGT00940000158743 ENSGT00710000106792.g ENSGT00940000156123.b ENSGT01050000245360 ENSGT00940000155145.e ENSGT00550000074964.i.a ENSGT00940000155339 ENSGT00950000182899.B.b ENSGT00940000161768.B ENSGT01030000234579.B.a ENSGT00940000160471 ENSGT00940000157481 ENSGT00920000149445.a ENSGT00940000166354.a ENSGT00940000154287.a.h ENSGT00950000182952.C.xc.b #22 ENSGT01050000245028.C ENSGT01050000245028.A ENSGT00520000058743 ENSGT00390000016292.g.a.a ENSGT00390000007560 ENSGT00390000003444 ENSGT00940000160787 ENSGT00390000017146.a ENSGT00390000014814.a.a.b ENSGT00950000183003.a.a.a.b ENSGT00940000158026 ENSGT00940000157256 ENSGT00940000155075.a.b ENSGT00390000002197 ENSGT00940000154400.b.d.b Cricetinae ANCESTRAL SPECIES 29 ENSGT00940000158743 ENSGT00710000106792.g ENSGT00940000156123.b ENSGT01050000245360 ENSGT00940000155145.e ENSGT00550000074964.i.a ENSGT00940000155339 ENSGT00950000182899.B.b ENSGT00940000161768.B ENSGT01030000234579.B.a ENSGT00940000160471 ENSGT00940000157481 ENSGT00920000149445.a ENSGT00940000166354.a ENSGT00940000154287.a.h ENSGT00950000182952.C.xc.b #22 ENSGT01050000245028.C ENSGT01050000245028.A ENSGT00390000016292.g.a.a ENSGT00390000007560 ENSGT00390000003444 ENSGT00940000160787 ENSGT00390000017146.a ENSGT00390000014814.a.a.b ENSGT00950000183003.a.a.a.b ENSGT00940000158026 ENSGT00940000157256 ENSGT00940000155075.a.b ENSGT00390000002197 ENSGT00940000154400.b.d.b ENSGT00940000160686 Chinese hamster chok1gshd MODERN SPECIES 16 ENSCGRG00001008147 Gria3 (ENSCGRG00001010277) ENSCGRG00001000441 6030498E09Rik (ENSCGRG00001016358) C1galt1c1 (ENSCGRG00001004167) Mcts1 (ENSCGRG00001022838) ENSCGRG00001000813 Lamp2 (ENSCGRG00001023305) Tex13c3 (ENSCGRG00001016863) Atp1b4 (ENSCGRG00001004737) Tmem255a (ENSCGRG00001007359) Zbtb33 (ENSCGRG00001007690) Rhox12 (ENSCGRG00001000074) ENSCGRG00001007488 ENSCGRG00001014368 ENSCGRG00001017971 #22 ENSCGRG00001000411 ENSCGRG00001019766 ENSCGRG00001009719 ENSCGRG00001016724 ENSCGRG00001015897 ENSCGRG00001012665 Rnf113a1 (ENSCGRG00001002251) NDUFA1 (ENSCGRG00001004710) Nkap (ENSCGRG00001013137) ENSCGRG00001006858 ENSCGRG00001021449 Sowahd (ENSCGRG00001011517) Septin6 (ENSCGRG00001014207) Nkrf (ENSCGRG00001001105) Ube2a (ENSCGRG00001007581) Golden Hamster MODERN SPECIES 761 C1galt1c1 (ENSMAUG00000015715) Mcts1 (ENSMAUG00000000385) Cul4b (ENSMAUG00000002566) Lamp2 (ENSMAUG00000016372) Tex13c3 (ENSMAUG00000001959) Atp1b4 (ENSMAUG00000016959) Tmem255a (ENSMAUG00000007801) Zbtb33 (ENSMAUG00000008177) Rhox12 (ENSMAUG00000012331) ENSMAUG00000009678 Rhox10 (ENSMAUG00000017260) ENSMAUG00000002213 #22 ENSMAUG00000004552 ENSMAUG00000016012 Ndufa1 (ENSMAUG00000000368) Akap14 (ENSMAUG00000014839) Nkap (ENSMAUG00000020220) Upf3b (ENSMAUG00000008705) ENSMAUG00000010952 Septin6 (ENSMAUG00000018038) Nkrf (ENSMAUG00000021303) Ube2a (ENSMAUG00000009245) Steep1 (ENSMAUG00000019253) Slc25a43 (ENSMAUG00000021574) Akap17b (ENSMAUG00000001593) Pgrmc1 (ENSMAUG00000009511) ENSMAUG00000019877 Cricetidae_B ANCESTRAL SPECIES 28 ENSGT00940000158743 ENSGT00710000106792.g ENSGT00940000156123.b ENSGT01050000245360 ENSGT00940000155145.e ENSGT00550000074964.i.a ENSGT00940000155339 ENSGT00950000182899.B.b ENSGT00940000161768.B ENSGT01030000234579.B.a ENSGT00940000160471 ENSGT00940000157481 ENSGT00920000149445.a ENSGT00940000154287.a.g.b ENSGT00940000166354.b ENSGT00950000182952.C.xc.b #22 Northern American deer mouse MODERN SPECIES 475 Thoc2 (ENSPEMG00000007626) Gria3 (ENSPEMG00000020768) ENSPEMG00000025713 ENSPEMG00000026463 C1galt1c1 (ENSPEMG00000003943) Mcts1 (ENSPEMG00000014914) Cul4b (ENSPEMG00000008902) ENSPEMG00000030809 Tex13c3 (ENSPEMG00000006117) Atp1b4 (ENSPEMG00000026754) Tmem255a (ENSPEMG00000020511) Zbtb33 (ENSPEMG00000023331) ENSPEMG00000017846 ENSPEMG00000013786 ENSPEMG00000026490 ENSPEMG00000002101 #22 ENSPEMG00000025608 ENSPEMG00000017550 ENSPEMG00000029359 ENSPEMG00000027345 Pls3 (ENSPEMG00000000739) ENSPEMG00000025081 Lrch2 (ENSPEMG00000023427) ENSPEMG00000029813 ENSPEMG00000027327 ENSPEMG00000029369 Amot (ENSPEMG00000009135) Lhfpl1 (ENSPEMG00000031060) ENSPEMG00000026868 ENSPEMG00000026774 Rtl4 (ENSPEMG00000014794) Murinae ANCESTRAL SPECIES 72 ENSGT00940000166354 ENSGT00940000154287.a.h ENSGT00950000182952.C.xc.b #22 Mus ANCESTRAL SPECIES 9 ENSGT00710000106792.g ENSGT00940000156123.b ENSGT01050000245360 ENSGT00940000155145.e ENSGT00550000074964.i.a ENSGT00940000155339 ENSGT00950000182899.B.b ENSGT00940000161768.B ENSGT01030000234579.B.a ENSGT00940000160471 ENSGT00940000157481 ENSGT00940000163385 ENSGT00920000149445 ENSGT00940000166354 ENSGT00940000154287.a.h ENSGT00950000182952.C.xc.b #22 ENSGT00730000112198.a.a ENSGT00700000106005 ENSGT01050000245028.A ENSGT01050000245028.C ENSGT00520000058743 ENSGT00390000016292.g.a.a ENSGT00390000007560 ENSGT00390000003444 ENSGT00940000160787 ENSGT00390000017146.a ENSGT00390000014814.b.s ENSGT00950000183003.a.a.a.b ENSGT00940000158026 ENSGT00940000157256 ENSGT00940000155075.a.b Shrew mouse DUPLICATION Shrew mouse MODERN SPECIES 23 Gria3 (MGP_PahariEiJ_G0031568) 6030498E09Rik (MGP_PahariEiJ_G0031567) C1galt1c1 (MGP_PahariEiJ_G0031566) Mcts1 (MGP_PahariEiJ_G0031565) MGP_PahariEiJ_G0031564 Lamp2 (MGP_PahariEiJ_G0031563) MGP_PahariEiJ_G0031562 Atp1b4 (MGP_PahariEiJ_G0031561) Tmem255a (MGP_PahariEiJ_G0031560) Zbtb33 (MGP_PahariEiJ_G0031559) MGP_PahariEiJ_G0031558 Rhox12 (MGP_PahariEiJ_G0031557) Rhox11 (MGP_PahariEiJ_G0031556) Rhox10 (MGP_PahariEiJ_G0031555) MGP_PahariEiJ_G0031554 #22 MGP_PahariEiJ_G0031553 #22 MGP_PahariEiJ_G0031552 MGP_PahariEiJ_G0031551 MGP_PahariEiJ_G0031550 MGP_PahariEiJ_G0031549 MGP_PahariEiJ_G0031548 Rnf113a1 (MGP_PahariEiJ_G0031547) Ndufa1 (MGP_PahariEiJ_G0031546) MGP_PahariEiJ_G0031545 Nkap (MGP_PahariEiJ_G0031544) Upf3b (MGP_PahariEiJ_G0031543) Rpl39 (MGP_PahariEiJ_G0031542) Sowahd (MGP_PahariEiJ_G0031541) MGP_PahariEiJ_G0031540 Nkrf (MGP_PahariEiJ_G0031539) MGP_PahariEiJ_G0031538 Shrew mouse MODERN SPECIES 23 Thoc2 (MGP_PahariEiJ_G0031569) Gria3 (MGP_PahariEiJ_G0031568) 6030498E09Rik (MGP_PahariEiJ_G0031567) C1galt1c1 (MGP_PahariEiJ_G0031566) Mcts1 (MGP_PahariEiJ_G0031565) MGP_PahariEiJ_G0031564 Lamp2 (MGP_PahariEiJ_G0031563) MGP_PahariEiJ_G0031562 Atp1b4 (MGP_PahariEiJ_G0031561) Tmem255a (MGP_PahariEiJ_G0031560) Zbtb33 (MGP_PahariEiJ_G0031559) MGP_PahariEiJ_G0031558 Rhox12 (MGP_PahariEiJ_G0031557) Rhox11 (MGP_PahariEiJ_G0031556) Rhox10 (MGP_PahariEiJ_G0031555) MGP_PahariEiJ_G0031554 #22 MGP_PahariEiJ_G0031553 #22 MGP_PahariEiJ_G0031552 MGP_PahariEiJ_G0031551 MGP_PahariEiJ_G0031550 MGP_PahariEiJ_G0031549 MGP_PahariEiJ_G0031548 Rnf113a1 (MGP_PahariEiJ_G0031547) Ndufa1 (MGP_PahariEiJ_G0031546) MGP_PahariEiJ_G0031545 Nkap (MGP_PahariEiJ_G0031544) Upf3b (MGP_PahariEiJ_G0031543) Rpl39 (MGP_PahariEiJ_G0031542) Sowahd (MGP_PahariEiJ_G0031541) MGP_PahariEiJ_G0031540 Nkrf (MGP_PahariEiJ_G0031539) Mus_A ANCESTRAL SPECIES 15 ENSGT00940000158743 ENSGT00710000106792.g ENSGT00940000156123.b ENSGT01050000245360 ENSGT00940000155145.e ENSGT00550000074964.i.a ENSGT00940000155339 ENSGT00950000182899.B.b ENSGT01030000234579.B.a ENSGT00940000160471 ENSGT00940000157481 ENSGT00940000163385 ENSGT00920000149445 ENSGT00940000166354 ENSGT00940000154287.a.h ENSGT00950000182952.C.xc.b #22 ENSGT01050000245028.A.a.b ENSGT00520000058743 ENSGT00390000016292.g.a.a ENSGT00390000007560 ENSGT00390000003444 ENSGT00940000160787 ENSGT00390000017146.a ENSGT00390000014814.b.s ENSGT00950000183003.a.a.a.b ENSGT00940000158026 ENSGT00940000157256 ENSGT00940000155075.a.b ENSGT00390000002197 ENSGT00940000154400.b.d.a.a ENSGT00940000160686 Mus_B ANCESTRAL SPECIES 14 ENSGT00940000158743 ENSGT00710000106792.g ENSGT00940000156123.b ENSGT01050000245360 ENSGT00940000155145.e ENSGT00550000074964.i.a ENSGT00940000155339 ENSGT00950000182899.B.b ENSGT01030000234579.B.a ENSGT00940000160471 ENSGT00940000157481 ENSGT00940000163385 ENSGT00920000149445 ENSGT00940000166354 ENSGT00940000154287.a.h ENSGT00950000182952.C.xc.b #22 ENSGT01050000245028.A.a.b ENSGT00520000058743 ENSGT00390000016292.g.a.a ENSGT00390000007560 ENSGT00390000003444 ENSGT00940000160787 ENSGT00390000017146.a ENSGT00390000014814.b.s ENSGT00950000183003.a.a.a.b ENSGT00940000158026 ENSGT00940000157256 ENSGT00940000155075.a.b ENSGT00390000002197 ENSGT00940000154400.b.d.a.a ENSGT00940000160686 Mus_C ANCESTRAL SPECIES 27 ENSGT00940000158743 ENSGT00710000106792.g ENSGT00940000156123.b ENSGT01050000245360 ENSGT00940000155145.e ENSGT00550000074964.i.a ENSGT00940000155339 ENSGT00950000182899.B.b ENSGT01030000234579.B.a ENSGT00940000160471 ENSGT00940000157481 ENSGT00940000163385 ENSGT00920000149445 ENSGT00940000166354 ENSGT00940000154287.a.h ENSGT00950000182952.C.xc.b #22 ENSGT00700000106005 ENSGT01050000245028.A.a.b ENSGT00520000058743 ENSGT00390000016292.g.a.a ENSGT00390000007560 ENSGT00390000003444 ENSGT00940000160787 ENSGT00390000017146.a ENSGT00390000014814.b.s ENSGT00950000183003.a.a.a.b ENSGT00940000158026 ENSGT00940000157256 ENSGT00940000155075.a.b ENSGT00390000002197 ENSGT00940000160686 Steppe mouse MODERN SPECIES 1512 ENSMSIG00000021326 #22 spretus MODERN SPECIES 19 Xiap (MGP_SPRETEiJ_G0034182) Thoc2 (MGP_SPRETEiJ_G0034181) Gria3 (MGP_SPRETEiJ_G0034180) 6030498E09Rik (MGP_SPRETEiJ_G0034179) C1galt1c1 (MGP_SPRETEiJ_G0034178) Mcts1 (MGP_SPRETEiJ_G0034177) Cul4b (MGP_SPRETEiJ_G0034176) Lamp2 (MGP_SPRETEiJ_G0034175) Atp1b4 (MGP_SPRETEiJ_G0034174) Tmem255a (MGP_SPRETEiJ_G0034173) Zbtb33 (MGP_SPRETEiJ_G0034172) Rhox13 (MGP_SPRETEiJ_G0034171) Rhox12 (MGP_SPRETEiJ_G0034170) Rhox11 (MGP_SPRETEiJ_G0034169) MGP_SPRETEiJ_G0034168 MGP_SPRETEiJ_G0034166 #22 MGP_SPRETEiJ_G0034165 MGP_SPRETEiJ_G0034164 MGP_SPRETEiJ_G0034163 MGP_SPRETEiJ_G0034162 MGP_SPRETEiJ_G0034161 MGP_SPRETEiJ_G0034160 MGP_SPRETEiJ_G0034159 Rhox1 (MGP_SPRETEiJ_G0034158) Gm9 (MGP_SPRETEiJ_G0034157) Rnf113a1 (MGP_SPRETEiJ_G0034156) Ndufa1 (MGP_SPRETEiJ_G0034155) Akap14 (MGP_SPRETEiJ_G0034154) Nkap (MGP_SPRETEiJ_G0034153) Upf3b (MGP_SPRETEiJ_G0034152) Rpl39 (MGP_SPRETEiJ_G0034151) Ryukyu mouse MODERN SPECIES 19 Thoc2 (MGP_CAROLIEiJ_G0033023) Gria3 (MGP_CAROLIEiJ_G0033022) 6030498E09Rik (MGP_CAROLIEiJ_G0033021) C1galt1c1 (MGP_CAROLIEiJ_G0033020) Mcts1 (MGP_CAROLIEiJ_G0033019) Cul4b (MGP_CAROLIEiJ_G0033018) Lamp2 (MGP_CAROLIEiJ_G0033017) MGP_CAROLIEiJ_G0033016 MGP_CAROLIEiJ_G0033015 Tmem255a (MGP_CAROLIEiJ_G0033014) Zbtb33 (MGP_CAROLIEiJ_G0033013) Rhox13 (MGP_CAROLIEiJ_G0033012) Rhox12 (MGP_CAROLIEiJ_G0033011) Rhox11 (MGP_CAROLIEiJ_G0033010) Rhox10 (MGP_CAROLIEiJ_G0033009) MGP_CAROLIEiJ_G0033007 #22 Rhox6 (MGP_CAROLIEiJ_G0033005) MGP_CAROLIEiJ_G0033004 MGP_CAROLIEiJ_G0033003 Gm9 (MGP_CAROLIEiJ_G0033002) MGP_CAROLIEiJ_G0033001 Nkap (MGP_CAROLIEiJ_G0033000) Upf3b (MGP_CAROLIEiJ_G0032999) MGP_CAROLIEiJ_G0032998 Sowahd (MGP_CAROLIEiJ_G0032997) Septin6 (MGP_CAROLIEiJ_G0032996) Nkrf (MGP_CAROLIEiJ_G0032995) MGP_CAROLIEiJ_G0032994 Steep1 (MGP_CAROLIEiJ_G0032993) Slc25a5 (MGP_CAROLIEiJ_G0032992) Slc25a43 (MGP_CAROLIEiJ_G0032991) Rat DUPLICATION Rat MODERN SPECIES 46 AABR07038676.1 (ENSRNOG00000028202) RGD1560124 (ENSRNOG00000063278) LOC691215 (ENSRNOG00000028189) C1galt1c1 (ENSRNOG00000069353) Mcts1 (ENSRNOG00000002563) Cul4b (ENSRNOG00000002585) LOC100360128 (ENSRNOG00000068620) Lamp2 (ENSRNOG00000000164) Atp1b4 (ENSRNOG00000007059) Tmem255a (ENSRNOG00000028085) Zbtb33 (ENSRNOG00000028899) Rhox13 (ENSRNOG00000028050) Rhox12 (ENSRNOG00000040033) Rhox11 (ENSRNOG00000028044) Rhox10 (ENSRNOG00000040026) Btg1b (ENSRNOG00000047100) #22 RGD1566035 (ENSRNOG00000030645) Btg1c (ENSRNOG00000032390) #22 ENSRNOG00000065266 LOC691272 (ENSRNOG00000043229) ENSRNOG00000070384 Rhox9 (ENSRNOG00000050457) Rhox7 (ENSRNOG00000063283) Rhox8 (ENSRNOG00000031534) ENSRNOG00000070486 LOC100364002 (ENSRNOG00000052383) Rhox5 (ENSRNOG00000046548) Rhoxf2b (ENSRNOG00000040013) Rhox3 (ENSRNOG00000053351) Rhox4g (ENSRNOG00000058333) RGD1560927 (ENSRNOG00000040008) Rat MODERN SPECIES 46 LOC691215 (ENSRNOG00000028189) C1galt1c1 (ENSRNOG00000069353) Mcts1 (ENSRNOG00000002563) Cul4b (ENSRNOG00000002585) LOC100360128 (ENSRNOG00000068620) Lamp2 (ENSRNOG00000000164) Atp1b4 (ENSRNOG00000007059) Tmem255a (ENSRNOG00000028085) Zbtb33 (ENSRNOG00000028899) Rhox13 (ENSRNOG00000028050) Rhox12 (ENSRNOG00000040033) Rhox11 (ENSRNOG00000028044) Rhox10 (ENSRNOG00000040026) Btg1b (ENSRNOG00000047100) #22 RGD1566035 (ENSRNOG00000030645) Btg1c (ENSRNOG00000032390) #22 ENSRNOG00000065266 LOC691272 (ENSRNOG00000043229) ENSRNOG00000070384 Rhox9 (ENSRNOG00000050457) Rhox7 (ENSRNOG00000063283) Rhox8 (ENSRNOG00000031534) ENSRNOG00000070486 LOC100364002 (ENSRNOG00000052383) Rhox5 (ENSRNOG00000046548) Rhoxf2b (ENSRNOG00000040013) Rhox3 (ENSRNOG00000053351) Rhox4g (ENSRNOG00000058333) RGD1560927 (ENSRNOG00000040008) Rnf113a1 (ENSRNOG00000066548) Ndufa1 (ENSRNOG00000071176) Muroidea_A ANCESTRAL SPECIES ENSGT00950000182952.C.yc #22 Murinae ANCESTRAL SPECIES ENSGT00950000182952.C.yc #22 Mus ANCESTRAL SPECIES ENSGT00950000182952.C.yc #22 Mus_A ANCESTRAL SPECIES ENSGT00950000182952.C.yc #22 Mus_B ANCESTRAL SPECIES ENSGT00950000182952.C.yc #22 Mus_C ANCESTRAL SPECIES ENSGT00950000182952.C.yc #22 Steppe mouse MODERN SPECIES 1289 ENSMSIG00000008736 #22 Kangaroo rat DUPLICATION Kangaroo rat MODERN SPECIES 408 Nsdhl (ENSDORG00000000136) Cetn2 (ENSDORG00000000131) Gabrq (ENSDORG00000001417) Gabra3 (ENSDORG00000003322) ENSDORG00000005056 Cnga2 (ENSDORG00000002366) Fate1 (ENSDORG00000002365) Prrg3 (ENSDORG00000002364) Vma21 (ENSDORG00000026433) Gpr50 (ENSDORG00000000063) Hmgb3 (ENSDORG00000010826) Cd99l2 (ENSDORG00000010822) Mtmr1 (ENSDORG00000010821) Mtm1 (ENSDORG00000010820) Mamld1 (ENSDORG00000027915) ENSDORG00000010633 #22 Tmem185a (ENSDORG00000015027) Ids (ENSDORG00000026027) Aff2 (ENSDORG00000015215) Fmr1 (ENSDORG00000012501) Slitrk2 (ENSDORG00000000545) ENSDORG00000005920 Slitrk4 (ENSDORG00000001489) ENSDORG00000026987 Ldoc1 (ENSDORG00000011028) Sox3 (ENSDORG00000027035) ENSDORG00000027706 ENSDORG00000027206 ENSDORG00000026314 Atp11c (ENSDORG00000003661) Mcf2 (ENSDORG00000006306) Kangaroo rat MODERN SPECIES 322 Vezt (ENSDORG00000006065) #7 Fgd6 (ENSDORG00000006064) #8 Nr2c1 (ENSDORG00000004257) #9 Ndufa12 (ENSDORG00000001500) #10 Tmcc3 (ENSDORG00000008687) #12 Cep83 (ENSDORG00000012104) #13 ENSDORG00000025370 ##14 ENSDORG00000025182 Cradd (ENSDORG00000011678) #15 Socs2 (ENSDORG00000026257) #16 Mrpl42 (ENSDORG00000015571) #17 Ube2n (ENSDORG00000000650) ##18 Nudt4 (ENSDORG00000025760) #19 ENSDORG00000024294 Eea1 (ENSDORG00000008811) #20 ENSDORG00000013710 #22 Dcn (ENSDORG00000009079) #23 Lum (ENSDORG00000005986) #24 Kera (ENSDORG00000005985) #25 Epyc (ENSDORG00000005984) #26 Ccer1 (ENSDORG00000028218) #27 Atp2b1 (ENSDORG00000000718) #29 Poc1b (ENSDORG00000013903) #30 Dusp6 (ENSDORG00000025322) #31 Kitl (ENSDORG00000011078) #32 Tmtc3 (ENSDORG00000016561) #33 ENSDORG00000027173 Cep290 (ENSDORG00000015894) #34 4930430F08Rik (ENSDORG00000015893) #35 1700017N19Rik (ENSDORG00000015892) #36 Mgat4c (ENSDORG00000025545) #37 Lagomorpha ANCESTRAL SPECIES 22 ENSGT00940000160526 ENSGT00940000155016 ENSGT00390000003290 #7 ENSGT00940000156334 #8 ENSGT00940000158165 #9 ENSGT00390000005848 #10 ENSGT00940000157275 #12 ENSGT00940000154003.A #13 ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14 ENSGT00940000157983 #16 ENSGT00390000010491 #17 ENSGT00540000070023.c.b.b ##18 ENSGT00940000155210.a.b #19 ENSGT00940000156910 #20 ENSGT00510000046843.b #21 ENSGT00950000182952.C #22 ENSGT00940000158382 #23 ENSGT00940000158177.b #24 ENSGT00940000158968 #25 ENSGT00940000157574 #26 ENSGT00730000111529 #27 ENSGT00940000158686 #29 ENSGT00940000154527.a.a.b ENSGT00940000160413 #30 ENSGT00940000158342.b #31 ENSGT00390000018272 #32 ENSGT00940000157538 #33 ENSGT00730000111039.C #34 ENSGT00500000044938 #35 ENSGT00920000149095.b #36 Rabbit MODERN SPECIES 15 VEZT (ENSOCUG00000008792) #7 ENSOCUG00000022191 FGD6 (ENSOCUG00000004665) #8 NR2C1 (ENSOCUG00000004657) #9 NDUFA12 (ENSOCUG00000033569) #10 TMCC3 (ENSOCUG00000008619) #12 CEP83 (ENSOCUG00000016919) #13 ENSOCUG00000016904 #14 ENSOCUG00000039373 SOCS2 (ENSOCUG00000010937) #16 ENSOCUG00000010928 #17 UBE2N (ENSOCUG00000011287) ##18 ENSOCUG00000011283 #19 EEA1 (ENSOCUG00000009295) #20 PLEKHG7 (ENSOCUG00000009290) #21 BTG1 (ENSOCUG00000008223) #22 DCN (ENSOCUG00000006969) #23 LUM (ENSOCUG00000005592) #24 KERA (ENSOCUG00000013394) #25 EPYC (ENSOCUG00000013389) #26 CCER1 (ENSOCUG00000013386) #27 ENSOCUG00000030126 ATP2B1 (ENSOCUG00000016507) #29 ENSOCUG00000012940 POC1B (ENSOCUG00000008219) #30 DUSP6 (ENSOCUG00000002902) #31 KITLG (ENSOCUG00000017687) #32 TMTC3 (ENSOCUG00000004320) #33 CEP290 (ENSOCUG00000004290) #34 C12orf29 (ENSOCUG00000004284) #35 C12orf50 (ENSOCUG00000004280) #36 Pika MODERN SPECIES 8434 BTG1 (ENSOPRG00000005730) #22 Tree shrew DUPLICATION Tree shrew MODERN SPECIES 7426 ENSTBEG00000014747 #22 Tree shrew MODERN SPECIES 9222 ENSTBEG00000008631 #22