Gnathostomata	ANCESTRAL SPECIES	85							ENSGT00950000183042.a.b	ENSGT00940000159167	ENSGT00940000158078	ENSGT00390000000987	ENSGT00390000007685	ENSGT01020000230401.b.a	ENSGT00940000158637	ENSGT00940000156566	ENSGT00940000153541.D	ENSGT00950000182952.C #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000154527.a.a.b	ENSGT00940000157494	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938
Euteleostomi	ANCESTRAL SPECIES	16	ENSGT00610000087444	ENSGT00940000158319	ENSGT00390000002524	ENSGT00940000158018	ENSGT00940000165155	ENSGT00950000183042.a.b	ENSGT00940000159167	ENSGT00940000158078	ENSGT00390000000987	ENSGT00390000007685	ENSGT01020000230401.b.a	ENSGT00530000064216	ENSGT00940000158637	ENSGT00940000156566	ENSGT00940000166455	ENSGT00950000182952.C #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000154527.a.a.b	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00950000182953.B.b	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00940000155352
Sarcopterygii	ANCESTRAL SPECIES	6	ENSGT00390000018321	ENSGT00940000159273	ENSGT00940000158320	ENSGT00390000003017.c.a	ENSGT00390000013390	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.D	ENSGT00390000007084	ENSGT00940000157262	ENSGT00940000157494	ENSGT00940000156030	ENSGT00390000008296.b.a.b	ENSGT00390000012850	ENSGT00950000182952.C #22	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000154527.b	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509
Tetrapoda	ANCESTRAL SPECIES	14								ENSGT00940000153920.a.b	ENSGT00940000153920.b	ENSGT00940000157363	ENSGT00390000011390	ENSGT00940000155327	ENSGT00950000182835.c.d	ENSGT00390000008296.b.a.b	ENSGT00390000012850	ENSGT00950000182952.C #22	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B
Amniota	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Mammalia	ANCESTRAL SPECIES	8	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Theria	ANCESTRAL SPECIES	2	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00540000073882	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00540000073882	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Primates	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000167249	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00430000033088	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00430000033088	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00430000033088	ENSGT00410000029301 #21	ENSGT00950000182952.C.qc #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00430000033088	ENSGT00410000029301 #21	ENSGT00950000182952.C.qc #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00430000033088	ENSGT00950000182952.C.qc #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00950000182952.C.qc #22
Olive baboon	MODERN SPECIES	19	ENSPANG00000022780 #7	TMCC3 (ENSPANG00000006620) #8	CEP83 (ENSPANG00000020390) #9	PLXNC1 (ENSPANG00000019455) #10	ENSPANG00000042478 #11	CRADD (ENSPANG00000000483) #12	SOCS2 (ENSPANG00000000482) #13	MRPL42 (ENSPANG00000030179) #14	UBE2N (ENSPANG00000036061) #15	ENSPANG00000001006 #16	ENSPANG00000048776 #17	ENSPANG00000046377 #18	EEA1 (ENSPANG00000012190) #19	PLEKHG7 (ENSPANG00000010989) #20	ENSPANG00000001912 #21	BTG1 (ENSPANG00000047180) #22	ENSPANG00000040226 #23	ENSPANG00000043992 #24	DCN (ENSPANG00000011237) #25	LUM (ENSPANG00000016364) #26	KERA (ENSPANG00000007908) #27	EPYC (ENSPANG00000012063) #28	CCER1 (ENSPANG00000050482) #29	ENSPANG00000050618 #30	ATP2B1 (ENSPANG00000012255) #31	POC1B (ENSPANG00000015875) #32	DUSP6 (ENSPANG00000044321) #33	ENSPANG00000039666 #34	KITLG (ENSPANG00000017126) #35	TMTC3 (ENSPANG00000022133) #36	CEP290 (ENSPANG00000004601) #37
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00950000182952.C.qc #22
Drill	MODERN SPECIES	694																BTG1 (ENSMLEG00000021357) #22
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448.h #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00430000033088	ENSGT00950000182952.C.qc #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448.h #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.a.b.a	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00950000182952.C.qc #22	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.b.a.b	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Crab-eating macaque	MODERN SPECIES	2	ENSMFAG00000065285	ENSMFAG00000039287 #10	ENSMFAG00000049795	ENSMFAG00000049279	CRADD (ENSMFAG00000043923) #12	SOCS2 (ENSMFAG00000031234) #13	MRPL42 (ENSMFAG00000032330) #14	ENSMFAG00000047633	ENSMFAG00000000379 ##15	ENSMFAG00000059302 #16	ENSMFAG00000047787	ENSMFAG00000056451	EEA1 (ENSMFAG00000000038) #19	PLEKHG7 (ENSMFAG00000034199) #20	ENSMFAG00000003136 #21	BTG1 (ENSMFAG00000055039) #22	ENSMFAG00000058222	DCN (ENSMFAG00000037651) #25	LUM (ENSMFAG00000036088) #26	KERA (ENSMFAG00000041597) #27	EPYC (ENSMFAG00000033919) #28	ENSMFAG00000053136 #30	ATP2B1 (ENSMFAG00000045257) #31	POC1B (ENSMFAG00000043490) #32	DUSP6 (ENSMFAG00000038546) #33	KITLG (ENSMFAG00000054618) #35	TMTC3 (ENSMFAG00000046285) #36	CEP290 (ENSMFAG00000038682) #37	C12orf29 (ENSMFAG00000032876)	C12orf50 (ENSMFAG00000039647)	ENSMFAG00000061681
Rhesus	MODERN SPECIES	2	ENSMMUG00000056553	TMCC3 (ENSMMUG00000018242) #8	CEP83 (ENSMMUG00000018239) #9	PLXNC1 (ENSMMUG00000018237) #10	CRADD (ENSMMUG00000012670) #12	ENSMMUG00000056517 #12	SOCS2 (ENSMMUG00000054674) #13	MRPL42 (ENSMMUG00000016805) #14	UBE2N (ENSMMUG00000020634) #15	NUDT4 (ENSMMUG00000064953) #16	ENSMMUG00000050504	EEA1 (ENSMMUG00000002244) #19	PLEKHG7 (ENSMMUG00000002243) #20	ENSMMUG00000062773	ENSMMUG00000049117 #21	BTG1 (ENSMMUG00000050631) #22	ENSMMUG00000059975	ENSMMUG00000058404 ##11	ENSMMUG00000063287	DCN (ENSMMUG00000016997) #25	LUM (ENSMMUG00000016995) #26	KERA (ENSMMUG00000051017) #27	EPYC (ENSMMUG00000011300) #28	CCER1 (ENSMMUG00000010912) #29	ENSMMUG00000000147 #30	ATP2B1 (ENSMMUG00000023378) #31	POC1B (ENSMMUG00000003574) #32	DUSP6 (ENSMMUG00000054968) #33	KITLG (ENSMMUG00000051340) #35	TMTC3 (ENSMMUG00000015864) #36	CEP290 (ENSMMUG00000015862) #37
Pig-tailed macaque	MODERN SPECIES	588	ENSMNEG00000005556	CEP83 (ENSMNEG00000029174) #9	PLXNC1 (ENSMNEG00000029540) #10	ENSMNEG00000035127	CRADD (ENSMNEG00000030892) #12	SOCS2 (ENSMNEG00000028971) #13	MRPL42 (ENSMNEG00000028853) #14	UBE2N (ENSMNEG00000040126) #15	ENSMNEG00000039076 #16	EEA1 (ENSMNEG00000002425) #19	ENSMNEG00000035731	PLEKHG7 (ENSMNEG00000030654) #20	ENSMNEG00000034688	ENSMNEG00000031694 #21	ENSMNEG00000043272	BTG1 (ENSMNEG00000039231) #22	DCN (ENSMNEG00000041455) #25	LUM (ENSMNEG00000029372) #26	KERA (ENSMNEG00000033316) #27	EPYC (ENSMNEG00000038088) #28	ENSMNEG00000029890 #30	ENSMNEG00000029379	ATP2B1 (ENSMNEG00000042320) #31	POC1B (ENSMNEG00000040128) #32	DUSP6 (ENSMNEG00000042616) #33	KITLG (ENSMNEG00000041931) #35	TMTC3 (ENSMNEG00000000847) #36	CEP290 (ENSMNEG00000041840) #37	C12orf29 (ENSMNEG00000042920)	C12orf50 (ENSMNEG00000030237)	ENSMNEG00000044276
Vervet Monkey	MODERN SPECIES	2	NR2C1 (ENSCSAG00000003648)	NDUFA12 (ENSCSAG00000003652) #7	TMCC3 (ENSCSAG00000003657) #8	CEP83 (ENSCSAG00000003663) #9	PLXNC1 (ENSCSAG00000003684) #10	ENSCSAG00000003695 #12	CRADD (ENSCSAG00000003700) #12	SOCS2 (ENSCSAG00000003703) #13	MRPL42 (ENSCSAG00000003706) #14	UBE2N (ENSCSAG00000003709) #15	ENSCSAG00000003713 #16	EEA1 (ENSCSAG00000003719) #19	ENSCSAG00000003722	PLEKHG7 (ENSCSAG00000003727) #20	ENSCSAG00000018931	BTG1 (ENSCSAG00000003730) #22	DCN (ENSCSAG00000003736) #25	LUM (ENSCSAG00000003741) #26	KERA (ENSCSAG00000003747) #27	EPYC (ENSCSAG00000003752) #28	CCER1 (ENSCSAG00000003756) #29	ENSCSAG00000003759	ATP2B1 (ENSCSAG00000003766) #31	POC1B (ENSCSAG00000003775) #32	DUSP6 (ENSCSAG00000003778) #33	ENSCSAG00000018928	KITLG (ENSCSAG00000003781) #35	TMTC3 (ENSCSAG00000003785) #36	CEP290 (ENSCSAG00000003796) #37	C12orf29 (ENSCSAG00000003808)	C12orf50 (ENSCSAG00000003820)
Rhinopithecus	ANCESTRAL SPECIES	88	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00390000008196.g.b.b	ENSGT00940000156910 #19	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00430000033088	ENSGT00410000029301 #21	ENSGT00950000182952.C.qc #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33
Golden snub-nosed monkey	MODERN SPECIES	2463	CEP83 (ENSRROG00000040194) #9	PLXNC1 (ENSRROG00000002550) #10	ENSRROG00000000058	CRADD (ENSRROG00000042918) #12	SOCS2 (ENSRROG00000044983) #13	MRPL42 (ENSRROG00000033949) #14	UBE2N (ENSRROG00000038745) #15	ENSRROG00000039703 #16	ENSRROG00000044247	EEA1 (ENSRROG00000033502) #19	ENSRROG00000015746	PLEKHG7 (ENSRROG00000043886) #20	ENSRROG00000043494	ENSRROG00000034318 #21	ENSRROG00000034343	BTG1 (ENSRROG00000034918) #22	DCN (ENSRROG00000033436) #25	LUM (ENSRROG00000044512) #26	KERA (ENSRROG00000038824) #27	EPYC (ENSRROG00000020682) #28	CCER1 (ENSRROG00000038633) #29
Black snub-nosed monkey	MODERN SPECIES	247	ENSRBIG00000031183	CEP83 (ENSRBIG00000028010) #9	PLXNC1 (ENSRBIG00000002209) #10	ENSRBIG00000029563	CRADD (ENSRBIG00000008849) #12	SOCS2 (ENSRBIG00000028666) #13	ENSRBIG00000029739	ENSRBIG00000044361 #14	ENSRBIG00000041083 #16	ENSRBIG00000042548	EEA1 (ENSRBIG00000033284) #19	PLEKHG7 (ENSRBIG00000042939) #20	ENSRBIG00000025951	ENSRBIG00000044583	ENSRBIG00000041392 #21	BTG1 (ENSRBIG00000031713) #22	DCN (ENSRBIG00000019558) #25	LUM (ENSRBIG00000021434) #26	KERA (ENSRBIG00000029673) #27	EPYC (ENSRBIG00000044397) #28	CCER1 (ENSRBIG00000028059) #29	ENSRBIG00000026791	ENSRBIG00000036719 #30	ATP2B1 (ENSRBIG00000032700) #31	CNTNAP5 (ENSRBIG00000043033)	SLC9A3 (ENSRBIG00000034086)	EXOC3 (ENSRBIG00000027923)	AHRR (ENSRBIG00000034863)
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00950000182952.C.pc ##22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00950000182952.C.pc ##22
Cercopithecinae_a	DUPLICATION
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00530000063353.a.b.a	ENSGT00940000160831	ENSGT00940000157334	ENSGT00940000156535	ENSGT00390000003223.u	ENSGT00390000015655.b	ENSGT01030000237275	ENSGT00910000147104	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00530000063669.b	ENSGT00940000158188	ENSGT00940000153528.a.b.a.b	ENSGT00950000182952.C.pc.a ##22	ENSGT01090000260070.A	ENSGT00910000147797	ENSGT00950000182878.b.a.c.a.a.a.b.a	ENSGT00910000147133	ENSGT00940000153288.a.b.a.b.m.b	ENSGT00940000155906.s	ENSGT01030000234623.a.a.a.a.b	ENSGT00530000064264	ENSGT00940000156713	ENSGT00950000183182.a.b	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000160565	ENSGT00730000111285	ENSGT00940000159202
Macaca	ANCESTRAL SPECIES	9	ENSGT01050000244879.b.a.b.b	ENSGT00530000063353.a.b.a	ENSGT00940000160831	ENSGT00940000157334	ENSGT00940000156535	ENSGT00390000003223.u	ENSGT00390000015655.b	ENSGT00910000147104	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00530000063669.b	ENSGT00940000158188	ENSGT00940000153528.a.b.a.b	ENSGT00950000182952.C.pc.a ##22	ENSGT01090000260070.A	ENSGT00910000147797	ENSGT00950000182878.b.a.c.a.a.a.b.a	ENSGT00910000147133	ENSGT00940000153288.a.b.a.b.m.b	ENSGT00940000155906.s	ENSGT01030000234623.a.a.a.a.b	ENSGT00530000064264	ENSGT00940000156713	ENSGT00950000183182.a.b	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000154639.o.a	ENSGT00940000160565	ENSGT00730000111285
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00640000091497.b	ENSGT00940000158416	ENSGT01050000244879.b.a.b.b	ENSGT00530000063353.a.b.a	ENSGT00940000160831	ENSGT00940000157334	ENSGT00940000156535	ENSGT00390000003223.u	ENSGT00390000015655.b	ENSGT00620000087993.a.a	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00530000063669.b	ENSGT00940000158188	ENSGT00940000153528.a.b.a.b	ENSGT00950000182952.C.pc.a ##22	ENSGT01090000260070.A	ENSGT00910000147797	ENSGT00980000202068.a.b.a.a.b.a.a.a	ENSGT00940000155906.s	ENSGT01030000234623.a.a.a.a.b	ENSGT00530000064264	ENSGT00940000156713	ENSGT00950000183182.a.b	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000154639.o.a	ENSGT00940000160565	ENSGT00730000111285	ENSGT00940000159202	ENSGT00390000009937
Crab-eating macaque	MODERN SPECIES	14	RFX6 (ENSMFAG00000000913)	ENSMFAG00000039023	ROS1 (ENSMFAG00000001072)	DCBLD1 (ENSMFAG00000033065)	GOPC (ENSMFAG00000032714)	ENSMFAG00000063596	NUS1 (ENSMFAG00000051605)	SLC35F1 (ENSMFAG00000043289)	CEP85L (ENSMFAG00000000904)	MCM9 (ENSMFAG00000002788)	ASF1A (ENSMFAG00000035748)	FAM184A (ENSMFAG00000033715)	MAN1A1 (ENSMFAG00000039714)	ENSMFAG00000064198	TBC1D32 (ENSMFAG00000038607)	ENSMFAG00000030219 ##22	GJA1 (ENSMFAG00000038903)	ENSMFAG00000063903	ENSMFAG00000062815	ENSMFAG00000056798	ENSMFAG00000008966	ENSMFAG00000030715	HSF2 (ENSMFAG00000032811)	SERINC1 (ENSMFAG00000043662)	PKIB (ENSMFAG00000033587)	FABP7 (ENSMFAG00000045709)	SMPDL3A (ENSMFAG00000043472)	CLVS2 (ENSMFAG00000003285)	ENSMFAG00000064738	TRDN (ENSMFAG00000000095)	NKAIN2 (ENSMFAG00000034602)
Rhesus	MODERN SPECIES	14	RFX6 (ENSMMUG00000017189)	VGLL2 (ENSMMUG00000023737)	ROS1 (ENSMMUG00000023738)	DCBLD1 (ENSMMUG00000017558)	NUS1 (ENSMMUG00000059327)	ENSMMUG00000053187	SLC35F1 (ENSMMUG00000022354)	CEP85L (ENSMMUG00000022184)	ENSMMUG00000055852	MCM9 (ENSMMUG00000008525)	ASF1A (ENSMMUG00000008526)	FAM184A (ENSMMUG00000013302)	MAN1A1 (ENSMMUG00000013304)	ENSMMUG00000051634	TBC1D32 (ENSMMUG00000017715)	ENSMMUG00000006198 ##22	GJA1 (ENSMMUG00000005225)	ENSMMUG00000063706	ENSMMUG00000015269	HSF2 (ENSMMUG00000007910)	SERINC1 (ENSMMUG00000007911)	PKIB (ENSMMUG00000040423)	FABP7 (ENSMMUG00000064586)	SMPDL3A (ENSMMUG00000054098)	CLVS2 (ENSMMUG00000018176)	TRDN (ENSMMUG00000009725)	ENSMMUG00000065276	NKAIN2 (ENSMMUG00000013322)	ENSMMUG00000052345	ENSMMUG00000062783	ENSMMUG00000060047
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00940000158416	ENSGT01050000244879.b.a.b.b	ENSGT00530000063353.a.b.a	ENSGT00940000160831	ENSGT00940000157334	ENSGT00940000156535	ENSGT00390000003223.u	ENSGT00390000015655.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00530000063669.b	ENSGT00940000158188	ENSGT00940000153528.a.b.a.b	ENSGT00950000182952.C.pc.a ##22	ENSGT01090000260070.A	ENSGT00950000182878.b.a.c.a.a.a.b.a	ENSGT00910000147133	ENSGT00940000153288.a.b.a.b.m.b	ENSGT00940000155906.s	ENSGT01030000234623.a.a.a.a.b	ENSGT00530000064264	ENSGT00940000156713	ENSGT00950000183182.a.b	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000160565	ENSGT00730000111285	ENSGT00940000159202	ENSGT00390000009937
Cercopithecinae_d	ANCESTRAL SPECIES	70	ENSGT00940000158416	ENSGT01050000244879.b.a.b.b	ENSGT00530000063353.a.b.a	ENSGT00940000160831	ENSGT00940000157334	ENSGT00940000156535	ENSGT00390000003223.u	ENSGT00390000015655.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00530000063669.b	ENSGT00940000158188	ENSGT00940000153528.a.b.a.b	ENSGT00950000182952.C.pc.a ##22	ENSGT00950000182878.b.a.c.a.a.a.b.a	ENSGT00910000147133	ENSGT00940000153288.a.b.a.b.m.b	ENSGT00940000155906.s	ENSGT01030000234623.a.a.a.a.b
Sooty mangabey	MODERN SPECIES	590	RFX6 (ENSCATG00000034545)	VGLL2 (ENSCATG00000038510)	ROS1 (ENSCATG00000021312)	ENSCATG00000022159	DCBLD1 (ENSCATG00000033783)	GOPC (ENSCATG00000037476)	NUS1 (ENSCATG00000039106)	SLC35F1 (ENSCATG00000039775)	CEP85L (ENSCATG00000040491)	PLN (ENSCATG00000011577)	MCM9 (ENSCATG00000039701)	ASF1A (ENSCATG00000037391)	FAM184A (ENSCATG00000025253)	MAN1A1 (ENSCATG00000029459)	TBC1D32 (ENSCATG00000033200)	ENSCATG00000022339 ##22	ENSCATG00000038664	ENSCATG00000007377	HSF2 (ENSCATG00000034181)	SERINC1 (ENSCATG00000039871)
Olive baboon	MODERN SPECIES	16	SLC35F1 (ENSPANG00000018515)	ENSPANG00000050580	PLN (ENSPANG00000003332)	CEP85L (ENSPANG00000007396)	ASF1A (ENSPANG00000009918)	MCM9 (ENSPANG00000012446)	FAM184A (ENSPANG00000022689)	MAN1A1 (ENSPANG00000019275)	ENSPANG00000050637	ENSPANG00000038876	ENSPANG00000045668	ENSPANG00000043223	TBC1D32 (ENSPANG00000025128)	ENSPANG00000047770	ENSPANG00000045220	ENSPANG00000006118 ##22	GJA1 (ENSPANG00000003060)	ENSPANG00000041583	ENSPANG00000048941	HSF2 (ENSPANG00000022516)	SERINC1 (ENSPANG00000021642)	PKIB (ENSPANG00000023568)	SMPDL3A (ENSPANG00000000315)	CLVS2 (ENSPANG00000003404)	TRDN (ENSPANG00000033731)	NKAIN2 (ENSPANG00000020087)	RNF217 (ENSPANG00000018473)	TPD52L1 (ENSPANG00000022517)	HDDC2 (ENSPANG00000016874)	ENSPANG00000043498 ##11	HEY2 (ENSPANG00000030951)
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00950000182952.C.pc.b ##22
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00430000033088	ENSGT00410000029301 #21	ENSGT00950000182952.C.pc.b ##22	ENSGT00390000018086.o.b.b #24	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Cercopithecinae_d	ANCESTRAL SPECIES	5	ENSGT00910000147837	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.a.a.n ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00430000033088	ENSGT00410000029301 #21	ENSGT00950000182952.C.pc.b ##22	ENSGT00390000018086.o.b.b #24	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Sooty mangabey	MODERN SPECIES	388													ENSCATG00000029456	ENSCATG00000010783	ENSCATG00000035311 #21	ENSCATG00000030442 ##22	ENSCATG00000043183 #24	DCN (ENSCATG00000032641) #25	LUM (ENSCATG00000028327) #26
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00430000033088	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Hominidae	ANCESTRAL SPECIES	4	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00430000033088	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00430000033088	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Pan	ANCESTRAL SPECIES	4	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00440000033468.d	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00950000183107.a.b.a.tb.b #30	ENSGT00940000158686 #31	ENSGT00390000016737.b	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Chimpanzee	MODERN SPECIES	3	TMCC3 (ENSPTRG00000005304) #8	ENSPTRG00000049511	CEP83 (ENSPTRG00000005302) #9	PLXNC1 (ENSPTRG00000005301) #10	ENSPTRG00000047060	CRADD (ENSPTRG00000005300) #12	SOCS2 (ENSPTRG00000005299) #13	MRPL42 (ENSPTRG00000022791) #14	UBE2N (ENSPTRG00000005297) ##15	NUDT4 (ENSPTRG00000005296) #16	ENSPTRG00000048686	EEA1 (ENSPTRG00000005295) #19	PLEKHG7 (ENSPTRG00000005292) #20	C12H12orf74 (ENSPTRG00000033711)	ENSPTRG00000029605 #21	BTG1 (ENSPTRG00000050131) #22	DCN (ENSPTRG00000005290) #25	LUM (ENSPTRG00000005289) #26	KERA (ENSPTRG00000005288) #27	EPYC (ENSPTRG00000005287) #28	CCER1 (ENSPTRG00000023775) #29	ENSPTRG00000046703 #30	ATP2B1 (ENSPTRG00000005286) #31	ENSPTRG00000046518	POC1B (ENSPTRG00000005284) #32	DUSP6 (ENSPTRG00000005282) #33	KITLG (ENSPTRG00000005281) #35	TMTC3 (ENSPTRG00000005280) #36	CEP290 (ENSPTRG00000005278) #37	C12H12orf29 (ENSPTRG00000005277)	C12H12orf50 (ENSPTRG00000005276)
Bonobo	MODERN SPECIES	3	ENSPPAG00000028908	ENSPPAG00000033767	CEP83 (ENSPPAG00000038283) #9	PLXNC1 (ENSPPAG00000041664) #10	ENSPPAG00000033933	ENSPPAG00000031890	ENSPPAG00000030048 #12	SOCS2 (ENSPPAG00000040884) #13	MRPL42 (ENSPPAG00000038254) #14	ENSPPAG00000028330 ##15	ENSPPAG00000035362 #16	ENSPPAG00000043536	EEA1 (ENSPPAG00000041822) #19	ENSPPAG00000044085 #20	ENSPPAG00000043982	BTG1 (ENSPPAG00000043618) #22	DCN (ENSPPAG00000039448) #25	LUM (ENSPPAG00000027479) #26	KERA (ENSPPAG00000042356) #27	EPYC (ENSPPAG00000029056) #28	CCER1 (ENSPPAG00000003461) #29	ENSPPAG00000017362 #30	ATP2B1 (ENSPPAG00000044122) #31	ENSPPAG00000014801	POC1B (ENSPPAG00000030897) #32	DUSP6 (ENSPPAG00000028930) #33	KITLG (ENSPPAG00000031443) #35	TMTC3 (ENSPPAG00000040761) #36	CEP290 (ENSPPAG00000027339) #37	C12orf29 (ENSPPAG00000042620)	C12orf50 (ENSPPAG00000035198)
Human	MODERN SPECIES	3	METAP2 (ENSG00000111142)	VEZT (ENSG00000028203)	FGD6 (ENSG00000180263)	NR2C1 (ENSG00000120798)	NDUFA12 (ENSG00000184752) #7	TMCC3 (ENSG00000057704) #8	CEP83 (ENSG00000173588) #9	PLXNC1 (ENSG00000136040) #10	CRADD (ENSG00000169372) #12	SOCS2 (ENSG00000120833) #13	MRPL42 (ENSG00000198015) #14	UBE2N (ENSG00000177889) #15	NUDT4 (ENSG00000173598) #16	EEA1 (ENSG00000102189) #19	PLEKHG7 (ENSG00000187510) #20	BTG1 (ENSG00000133639) #22	DCN (ENSG00000011465) #25	LUM (ENSG00000139329) #26	KERA (ENSG00000139330) #27	EPYC (ENSG00000083782) #28	CCER1 (ENSG00000197651) #29	ATP2B1 (ENSG00000070961) #31	GALNT4 (ENSG00000257594)	POC1B-GALNT4 (ENSG00000259075)	POC1B (ENSG00000139323) #32	DUSP6 (ENSG00000139318) #33	KITLG (ENSG00000049130) #35	TMTC3 (ENSG00000139324) #36	CEP290 (ENSG00000198707) #37	C12orf29 (ENSG00000133641)	C12orf50 (ENSG00000165805)
Gorilla	MODERN SPECIES	3	ENSGGOG00000028504	ENSGGOG00000036546	ENSGGOG00000028247	CEP83 (ENSGGOG00000026256) #9	PLXNC1 (ENSGGOG00000002553) #10	CRADD (ENSGGOG00000025856) #12	SOCS2 (ENSGGOG00000010194) #13	MRPL42 (ENSGGOG00000022760) #14	ENSGGOG00000024332 ##15	ENSGGOG00000014324 #16	EEA1 (ENSGGOG00000005235) #19	ENSGGOG00000014096 #20	ENSGGOG00000014092	ENSGGOG00000011891	ENSGGOG00000011882 #21	ENSGGOG00000025615 #22	DCN (ENSGGOG00000003795) #25	LUM (ENSGGOG00000028361) #26	KERA (ENSGGOG00000009652) #27	EPYC (ENSGGOG00000012816) #28	CCER1 (ENSGGOG00000010742) #29	ATP2B1 (ENSGGOG00000014187) #31	ENSGGOG00000024502	POC1B (ENSGGOG00000008572) #32	DUSP6 (ENSGGOG00000027241) #33	KITLG (ENSGGOG00000021939) #35	ENSGGOG00000024578	TMTC3 (ENSGGOG00000012696) #36	CEP290 (ENSGGOG00000025227) #37	C12orf29 (ENSGGOG00000005986)	C12orf50 (ENSGGOG00000000185)
Orangutan	MODERN SPECIES	3	FGD6 (ENSPPYG00000004841)	NR2C1 (ENSPPYG00000004840)	NDUFA12 (ENSPPYG00000004839) #7	TMCC3 (ENSPPYG00000004838) #8	CEP83 (ENSPPYG00000004837) #9	PLXNC1 (ENSPPYG00000004836) #10	CRADD (ENSPPYG00000004835) #12	SOCS2 (ENSPPYG00000004834) #13	MRPL42 (ENSPPYG00000035988) #14	UBE2N (ENSPPYG00000035816) ##15	NUDT4 (ENSPPYG00000004831) #16	EEA1 (ENSPPYG00000004830) #19	PLEKHG7 (ENSPPYG00000004829) #20	ENSPPYG00000038840	ENSPPYG00000041254 #21	BTG1 (ENSPPYG00000031127) #22	DCN (ENSPPYG00000004826) #25	LUM (ENSPPYG00000004825) #26	KERA (ENSPPYG00000004824) #27	EPYC (ENSPPYG00000004823) #28	CCER1 (ENSPPYG00000004822) #29	ATP2B1 (ENSPPYG00000004820) #31	POC1B (ENSPPYG00000004819)	DUSP6 (ENSPPYG00000004817) #33	ENSPPYG00000031818	KITLG (ENSPPYG00000036228) #35	TMTC3 (ENSPPYG00000004815) #36	CEP290 (ENSPPYG00000004814) #37	C12H12orf29 (ENSPPYG00000004813)	C12orf50 (ENSPPYG00000004812)	MGAT4C (ENSPPYG00000004811)
Gibbon	MODERN SPECIES		CEP83 (ENSNLEG00000005742) #9	PLXNC1 (ENSNLEG00000005722) #10	ENSNLEG00000034769	ENSNLEG00000030035	CRADD (ENSNLEG00000005714) #12	SOCS2 (ENSNLEG00000005710) #13	MRPL42 (ENSNLEG00000005699) #14	ENSNLEG00000005695 ##15	ENSNLEG00000005674 #16	EEA1 (ENSNLEG00000005649) #19	ENSNLEG00000029636	ENSNLEG00000005642 #20	ENSNLEG00000005638	ENSNLEG00000005634 #21	ENSNLEG00000005637	BTG1 (ENSNLEG00000029316) #22	DCN (ENSNLEG00000005597) #25	LUM (ENSNLEG00000005594) #26	KERA (ENSNLEG00000005587) #27	EPYC (ENSNLEG00000005578) #28	ENSNLEG00000028183 #30	ENSNLEG00000028489	ATP2B1 (ENSNLEG00000005548) #31	POC1B (ENSNLEG00000034847) #32	ENSNLEG00000032235	DUSP6 (ENSNLEG00000028083) #33	KITLG (ENSNLEG00000005483) #35	TMTC3 (ENSNLEG00000005456) #36	CEP290 (ENSNLEG00000005417) #37	C12orf29 (ENSNLEG00000005396)	C12orf50 (ENSNLEG00000005395)
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.eb.a.b #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b.s #16	ENSGT00390000003156.a.b.k.a.b	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00430000033088	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00390000001332.k.b	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Cebidae	ANCESTRAL SPECIES	2	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.eb.a.b #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b.s #16	ENSGT00390000003156.a.b.k.a.b	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000033088	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00390000001332.k.b	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	21	METTL25 (ENSCJAG00000019400)	TMTC2 (ENSCJAG00000019420)	ENSCJAG00000073753	ENSCJAG00000081141	ENSCJAG00000086215	SLC6A15 (ENSCJAG00000019425)	TSPAN19 (ENSCJAG00000039345)	LRRIQ1 (ENSCJAG00000019445)	ALX1 (ENSCJAG00000080722)	ENSCJAG00000085601	EEA1 (ENSCJAG00000019460) #19	PLEKHG7 (ENSCJAG00000019495) #20	ENSCJAG00000019504 #21	ENSCJAG00000072042	ENSCJAG00000047057	ENSCJAG00000040127 #22	DCN (ENSCJAG00000019513) #25	LUM (ENSCJAG00000039709) #26	KERA (ENSCJAG00000019551) #27	ENSCJAG00000066164	EPYC (ENSCJAG00000019555) #28	ENSCJAG00000060300	ENSCJAG00000084144	ENSCJAG00000087071	ENSCJAG00000059999	ENSCJAG00000055513 ##11	ATP2B1 (ENSCJAG00000019568) #31	POC1B (ENSCJAG00000019637) #32	DUSP6 (ENSCJAG00000083917) #33	ENSCJAG00000019658	ENSCJAG00000019661 #35
Marmoset	MODERN SPECIES		DIAPH3 (ENSCJAG00000003729)	ENSCJAG00000056633	ENSCJAG00000073048	ENSCJAG00000071873	ENSCJAG00000085937	ENSCJAG00000071744	PCDH17 (ENSCJAG00000003715)	ENSCJAG00000083356	ENSCJAG00000080780	ENSCJAG00000003713	OLFM4 (ENSCJAG00000003690)	PCDH8 (ENSCJAG00000045669)	CNMD (ENSCJAG00000003648)	ENSCJAG00000003604	ENSCJAG00000083123	ENSCJAG00000047301 #22	ENSCJAG00000071385	NEK3 (ENSCJAG00000073411)	ENSCJAG00000055329	ENSCJAG00000078533	ALG11 (ENSCJAG00000036951)	ENSCJAG00000008414	ENSCJAG00000080418	ENSCJAG00000081654	ENSCJAG00000084063	ENSCJAG00000072532	ENSCJAG00000043055	ATP7B (ENSCJAG00000008347)	ENSCJAG00000084286	ENSCJAG00000077025	TMEM272 (ENSCJAG00000054074)
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.eb.a.b #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b.s #16	ENSGT00390000003156.a.b.k.a.b	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000033088	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00390000001332.k.b	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Bolivian squirrel monkey	MODERN SPECIES	67									UBE2N (ENSSBOG00000031145) #15	ENSSBOG00000024188 #16	ENSSBOG00000035018	EEA1 (ENSSBOG00000030840) #19	PLEKHG7 (ENSSBOG00000035263) #20	ENSSBOG00000027119	ENSSBOG00000029330 #21	BTG1 (ENSSBOG00000031360) #22	DCN (ENSSBOG00000032365) #25	LUM (ENSSBOG00000030254) #26	KERA (ENSSBOG00000020371) #27	EPYC (ENSSBOG00000026508) #28	CCER1 (ENSSBOG00000001585) #29	ENSSBOG00000030149	ATP2B1 (ENSSBOG00000022877) #31	POC1B (ENSSBOG00000023395) #32	DUSP6 (ENSSBOG00000022133) #33	ENSSBOG00000021475	KITLG (ENSSBOG00000026788) #35	ENSSBOG00000025089	TMTC3 (ENSSBOG00000027049) #36	CEP290 (ENSSBOG00000024214) #37	C12orf29 (ENSSBOG00000033321)
Capuchin	MODERN SPECIES	212					PLXNC1 (ENSCCAG00000022143) #10	ENSCCAG00000033026	CRADD (ENSCCAG00000022667) #12	SOCS2 (ENSCCAG00000026349) #13	ENSCCAG00000031179 #14	UBE2N (ENSCCAG00000033947) #15	ENSCCAG00000011514 #16	EEA1 (ENSCCAG00000024149) #19	PLEKHG7 (ENSCCAG00000022793) #20	ENSCCAG00000028983	ENSCCAG00000036807 #21	BTG1 (ENSCCAG00000022844) #22	ENSCCAG00000016024	DCN (ENSCCAG00000029089) #25	LUM (ENSCCAG00000035308) #26	KERA (ENSCCAG00000021792) #27	EPYC (ENSCCAG00000035448) #28
Mas night monkey	MODERN SPECIES	844	CEP83 (ENSANAG00000037925) #9	PLXNC1 (ENSANAG00000037102) #10	ENSANAG00000036838	CRADD (ENSANAG00000036187) #12	SOCS2 (ENSANAG00000035479) #13	ENSANAG00000036935 #14	ENSANAG00000036950 ##15	ENSANAG00000036120 #16	ENSANAG00000020476	EEA1 (ENSANAG00000006674) #19	ENSANAG00000036596	PLEKHG7 (ENSANAG00000037547) #20	ENSANAG00000036770	ENSANAG00000020232 #21	ENSANAG00000036734	BTG1 (ENSANAG00000037621) #22	ENSANAG00000037565	DCN (ENSANAG00000022968) #25	LUM (ENSANAG00000020478) #26	KERA (ENSANAG00000037464) #27	EPYC (ENSANAG00000037744) #28	ENSANAG00000018323	ATP2B1 (ENSANAG00000027760) #31	POC1B (ENSANAG00000023816) #32	DUSP6 (ENSANAG00000037906) #33	KITLG (ENSANAG00000001756) #35	ENSANAG00000022268	TMTC3 (ENSANAG00000021779) #36	CEP290 (ENSANAG00000021204) #37	C12orf29 (ENSANAG00000023232)
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.s #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.cb.a #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Mouse lemur	MODERN SPECIES	29	VEZT (ENSMICG00000031583)	FGD6 (ENSMICG00000005866)	NR2C1 (ENSMICG00000005857)	ENSMICG00000014848	ENSMICG00000032833 #7	TMCC3 (ENSMICG00000038267) #8	CEP83 (ENSMICG00000016681) #9	PLXNC1 (ENSMICG00000016660) #10	CRADD (ENSMICG00000010191) #12	ENSMICG00000047969 #13	ENSMICG00000032596 #14	ENSMICG00000036780 ##15	ENSMICG00000031655 #16	EEA1 (ENSMICG00000015611) #19	PLEKHG7 (ENSMICG00000032406) #20	BTG1 (ENSMICG00000009227) #22	DCN (ENSMICG00000028201) #25	LUM (ENSMICG00000000377) #26	KERA (ENSMICG00000000375) #27	EPYC (ENSMICG00000017312) #28	CCER1 (ENSMICG00000046045) #29	ATP2B1 (ENSMICG00000005120) #31	POC1B (ENSMICG00000033443) #32	DUSP6 (ENSMICG00000005109) #33	KITLG (ENSMICG00000027108) #35	TMTC3 (ENSMICG00000032189) #36	ENSMICG00000028980	CEP290 (ENSMICG00000008089) #37	ENSMICG00000008083	C12orf50 (ENSMICG00000008075)	ENSMICG00000035359
Lemuriformes_a	ANCESTRAL SPECIES	47	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.s #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.cb.a #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Coquerels sifaka	MODERN SPECIES	968	METAP2 (ENSPCOG00000016978)	ENSPCOG00000001316	VEZT (ENSPCOG00000019402)	FGD6 (ENSPCOG00000020148)	NR2C1 (ENSPCOG00000021750)	NDUFA12 (ENSPCOG00000021872) #7	TMCC3 (ENSPCOG00000015961) #8	CEP83 (ENSPCOG00000019573) #9	PLXNC1 (ENSPCOG00000027273) #10	CRADD (ENSPCOG00000024617) #12	ENSPCOG00000021688 ##15	ENSPCOG00000024689 #16	EEA1 (ENSPCOG00000025462) #19	PLEKHG7 (ENSPCOG00000021727) #20	ENSPCOG00000013237	BTG1 (ENSPCOG00000009296) #22	DCN (ENSPCOG00000017826) #25	KERA (ENSPCOG00000022027) #27	EPYC (ENSPCOG00000010824) #28	CCER1 (ENSPCOG00000016134) #29
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	710														EEA1 (ENSPSMG00000012167) #19	PLEKHG7 (ENSPSMG00000012087) #20	ENSPSMG00000012072 #22	DCN (ENSPSMG00000012019) #25	LUM (ENSPSMG00000011955) #26	KERA (ENSPSMG00000011947) #27	EPYC (ENSPSMG00000011941) #28	CCER1 (ENSPSMG00000011926) #29	ATP2B1 (ENSPSMG00000011587) #31	POC1B (ENSPSMG00000011133) #32
Greater bamboo lemur	MODERN SPECIES	1419																ENSPSMG00000006778 #22
Bushbaby	MODERN SPECIES	122	ENSOGAG00000008469	VEZT (ENSOGAG00000011835)	FGD6 (ENSOGAG00000011825)	NR2C1 (ENSOGAG00000011821)	NDUFA12 (ENSOGAG00000010853) #7	CEP83 (ENSOGAG00000006072) #9	ENSOGAG00000029202 #10	ENSOGAG00000006063	CRADD (ENSOGAG00000025620) #12	SOCS2 (ENSOGAG00000000104) #13	ENSOGAG00000034461 ##15	ENSOGAG00000000101 #16	EEA1 (ENSOGAG00000001276) #19	ENSOGAG00000001272 #20	ENSOGAG00000024825	BTG1 (ENSOGAG00000026483) #22	DCN (ENSOGAG00000008617) #25	LUM (ENSOGAG00000025875) #26	KERA (ENSOGAG00000008613) #27	EPYC (ENSOGAG00000008610) #28	CCER1 (ENSOGAG00000032642) #29	ATP2B1 (ENSOGAG00000008271) #31	POC1B (ENSOGAG00000008265) #32	DUSP6 (ENSOGAG00000029015) #33	KITLG (ENSOGAG00000009638) #35	TMTC3 (ENSOGAG00000010801) #36	CEP290 (ENSOGAG00000010791) #37	C12orf29 (ENSOGAG00000010788)	C12orf50 (ENSOGAG00000006837)	ENSOGAG00000034474	ENSOGAG00000032440
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	7426																ENSTBEG00000014747 #22
Tree shrew	MODERN SPECIES	9222																ENSTBEG00000008631 #22
Glires	ANCESTRAL SPECIES	4	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Rodentia	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	42	Ccdc38 (ENSJJAG00000013539)	ENSJJAG00000011272	Ntn4 (ENSJJAG00000009845)	ENSJJAG00000016408	Vezt (ENSJJAG00000023035)	Fgd6 (ENSJJAG00000015874)	Nr2c1 (ENSJJAG00000017174)	Ndufa12 (ENSJJAG00000008129) #7	ENSJJAG00000001738	Tmcc3 (ENSJJAG00000016753) #8	Cep83 (ENSJJAG00000018283) #9	ENSJJAG00000011221 #10	Cradd (ENSJJAG00000019223) #12	ENSJJAG00000011721 ##15	Eea1 (ENSJJAG00000011838) #19	ENSJJAG00000003396 #22	Dcn (ENSJJAG00000018394) #25	Lum (ENSJJAG00000016615) #26	Kera (ENSJJAG00000010866) #27	Epyc (ENSJJAG00000015074) #28	Atp2b1 (ENSJJAG00000014291) #31	Poc1b (ENSJJAG00000013503) #32	ENSJJAG00000005687 #33	Kitl (ENSJJAG00000021051) #35	Tmtc3 (ENSJJAG00000013597) #36	Cep290 (ENSJJAG00000002440) #37	4930430F08Rik (ENSJJAG00000013569)	1700017N19Rik (ENSJJAG00000023823)	Mgat4c (ENSJJAG00000021989)	Nts (ENSJJAG00000014653)	Rassf9 (ENSJJAG00000013251)
Lesser Egyptian jerboa	MODERN SPECIES	42	Ribc2 (ENSJJAG00000021212)	Fbln1 (ENSJJAG00000022397)	Atxn10 (ENSJJAG00000021073)	Wnt7b (ENSJJAG00000019892)	Ppara (ENSJJAG00000020917)	Cdpf1 (ENSJJAG00000020066)	Pkdrej (ENSJJAG00000021330)	Ttc38 (ENSJJAG00000021274)	Gtse1 (ENSJJAG00000020084)	Trmu (ENSJJAG00000000667)	Celsr1 (ENSJJAG00000023159)	Gramd4 (ENSJJAG00000022516)	Cerk (ENSJJAG00000022131)	Tbc1d22a (ENSJJAG00000022725)	Tafa5 (ENSJJAG00000022146)	ENSJJAG00000022456 #22	ENSJJAG00000020987	Brd1 (ENSJJAG00000021894)	Alg12 (ENSJJAG00000021461)	Creld2 (ENSJJAG00000011752)	Pim3 (ENSJJAG00000023071)	Ttll8 (ENSJJAG00000011488)	Mlc1 (ENSJJAG00000017316)	Mov10l1 (ENSJJAG00000007026)	Panx2 (ENSJJAG00000022586)	Trabd (ENSJJAG00000002026)	Selenoo (ENSJJAG00000011247)	Tubgcp6 (ENSJJAG00000001268)	ENSJJAG00000010762	Mapk12 (ENSJJAG00000023055)	Mapk11 (ENSJJAG00000022908)
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Upper Galilee mountains blind mole rat	MODERN SPECIES	512							ENSNGAG00000024338 #12	Socs2 (ENSNGAG00000013240) #13	Mrpl42 (ENSNGAG00000000717) #14	Ube2n (ENSNGAG00000013689) #15	Nudt4 (ENSNGAG00000023320) #16	ENSNGAG00000012929	ENSNGAG00000006958	Eea1 (ENSNGAG00000024349) #19	ENSNGAG00000009583	Btg1 (ENSNGAG00000024134) #22	Dcn (ENSNGAG00000001057) #25	Lum (ENSNGAG00000010684) #26	Kera (ENSNGAG00000012487) #27	Epyc (ENSNGAG00000002171) #28	Ccer1 (ENSNGAG00000005210) #29	Atp2b1 (ENSNGAG00000013753) #31	Poc1b (ENSNGAG00000019321) #32	Dusp6 (ENSNGAG00000023285) #33	ENSNGAG00000004971	Kitl (ENSNGAG00000006563) #35	Tmtc3 (ENSNGAG00000015646) #36	Cep290 (ENSNGAG00000018519) #37	4930430F08Rik (ENSNGAG00000022800)	1700017N19Rik (ENSNGAG00000022882)
Muroidea_A	DUPLICATION
Muroidea_A	DUPLICATION
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.d.s ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Cricetidae_B	ANCESTRAL SPECIES	29	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.d.s ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Prairie vole	MODERN SPECIES	10	Usp44 (ENSMOCG00000020189)	ENSMOCG00000013555	ENSMOCG00000020971	Vezt (ENSMOCG00000000685)	Fgd6 (ENSMOCG00000017458)	Nr2c1 (ENSMOCG00000006925)	Ndufa12 (ENSMOCG00000013678) #7	Tmcc3 (ENSMOCG00000012369) #8	Cep83 (ENSMOCG00000010672) #9	Plxnc1 (ENSMOCG00000014781) #10	Cradd (ENSMOCG00000000329) #12	ENSMOCG00000019732 #13	ENSMOCG00000013541 #14	Nudt4 (ENSMOCG00000003024) #16	Eea1 (ENSMOCG00000008700) #19	Btg1 (ENSMOCG00000012463) #22	Dcn (ENSMOCG00000011845) #25	Lum (ENSMOCG00000001159) #26	Kera (ENSMOCG00000020045) #27	Epyc (ENSMOCG00000008447) #28	Ccer1 (ENSMOCG00000009249) #29	Atp2b1 (ENSMOCG00000012513) #31	Poc1b (ENSMOCG00000015822) #32	Dusp6 (ENSMOCG00000011753) #33	ENSMOCG00000003349	Kitl (ENSMOCG00000018911) #35	Tmtc3 (ENSMOCG00000007538) #36	Cep290 (ENSMOCG00000010037) #37	4930430F08Rik (ENSMOCG00000021234)	1700017N19Rik (ENSMOCG00000017688)	Mgat4c (ENSMOCG00000012409)
Northern American deer mouse	MODERN SPECIES	9	ENSPEMG00000027065	Fgd6 (ENSPEMG00000000975)	Nr2c1 (ENSPEMG00000011087)	Ndufa12 (ENSPEMG00000023653) #7	Tmcc3 (ENSPEMG00000022879) #8	Cep83 (ENSPEMG00000019426) #9	Plxnc1 (ENSPEMG00000019499) #10	ENSPEMG00000021950	Cradd (ENSPEMG00000013349) #12	Socs2 (ENSPEMG00000027596) #13	ENSPEMG00000020562 #14	ENSPEMG00000029432 ##15	Nudt4 (ENSPEMG00000021026) #16	Eea1 (ENSPEMG00000010629) #19	ENSPEMG00000003344	Btg1 (ENSPEMG00000030029) #22	Dcn (ENSPEMG00000019308) #25	Lum (ENSPEMG00000019303) #26	Kera (ENSPEMG00000013253) #27	Epyc (ENSPEMG00000019173) #28	Ccer1 (ENSPEMG00000019732) #29	ENSPEMG00000019550 #31	Poc1b (ENSPEMG00000020051) #32	Dusp6 (ENSPEMG00000026221) #33	Kitl (ENSPEMG00000019688) #35	Tmtc3 (ENSPEMG00000000749) #36	Cep290 (ENSPEMG00000008348) #37	4930430F08Rik (ENSPEMG00000016254)	1700017N19Rik (ENSPEMG00000010447)	Slc6a15 (ENSPEMG00000010154)	Lrriq1 (ENSPEMG00000012353)
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.a.a ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Chinese hamster chok1gshd	MODERN SPECIES	83	Vezt (ENSCGRG00001016545)	Fgd6 (ENSCGRG00001022120)	Nr2c1 (ENSCGRG00001021503)	Ndufa12 (ENSCGRG00001023632) #7	Tmcc3 (ENSCGRG00001011362) #8	Cep83 (ENSCGRG00001017799) #9	Plxnc1 (ENSCGRG00001021705) #10	Cradd (ENSCGRG00001005469) #12	Socs2 (ENSCGRG00001007954) #13	ENSCGRG00001012694 #14	ENSCGRG00001014867 ##15	Nudt4 (ENSCGRG00001016406) #16	Gm17728 (ENSCGRG00001019515)	ENSCGRG00001022131	Eea1 (ENSCGRG00001007706) #19	Btg1 (ENSCGRG00001017332) #22	Dcn (ENSCGRG00001019795) #25	Lum (ENSCGRG00001024041) #26	Kera (ENSCGRG00001024292) #27	Epyc (ENSCGRG00001000236) #28	Ccer1 (ENSCGRG00001007933) #29	Atp2b1 (ENSCGRG00001018626) #31	Poc1b (ENSCGRG00001015662) #32	ENSCGRG00001009510	Dusp6 (ENSCGRG00001011335) #33	Kitl (ENSCGRG00001016450) #35	Tmtc3 (ENSCGRG00001019153) #36	Cep290 (ENSCGRG00001020423) #37	4930430F08Rik (ENSCGRG00001019742)	1700017N19Rik (ENSCGRG00001014381)	Mgat4c (ENSCGRG00001006307)
Golden Hamster	MODERN SPECIES	628	Ntn4 (ENSMAUG00000004210)	Usp44 (ENSMAUG00000000679)	ENSMAUG00000014524	Vezt (ENSMAUG00000011049)	Nr2c1 (ENSMAUG00000005656)	ENSMAUG00000009984 #7	Tmcc3 (ENSMAUG00000001274) #8	Cep83 (ENSMAUG00000018689) #9	Plxnc1 (ENSMAUG00000021960) #10	Cradd (ENSMAUG00000022216) #12	Socs2 (ENSMAUG00000011777) #13	ENSMAUG00000018130 #14	ENSMAUG00000003983 ##15	ENSMAUG00000008245 #16	Eea1 (ENSMAUG00000008757) #19	Btg1 (ENSMAUG00000020545) #22	Dcn (ENSMAUG00000021986) #25	Lum (ENSMAUG00000014903) #26	Kera (ENSMAUG00000022158) #27	Epyc (ENSMAUG00000017349) #28	Ccer1 (ENSMAUG00000009078) #29	Atp2b1 (ENSMAUG00000009310) #31	Poc1b (ENSMAUG00000021507) #32	Kitl (ENSMAUG00000016386) #35	Tmtc3 (ENSMAUG00000020385) #36	Cep290 (ENSMAUG00000022146) #37	4930430F08Rik (ENSMAUG00000013438)	ENSMAUG00000008756	ENSMAUG00000004735	Nts (ENSMAUG00000013146)	Rassf9 (ENSMAUG00000012420)
Murinae	ANCESTRAL SPECIES	22	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Mus	ANCESTRAL SPECIES	23	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00860000135975	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00900000143579	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00940000155526.b	ENSGT00390000006813.t	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00860000135975	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.m #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00390000009724.l.i.b.a	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00900000143783	ENSGT00730000111529 #29	ENSGT00900000143579	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00940000155526.b	ENSGT00390000006813.t	ENSGT00390000018272 #35	ENSGT00940000157538 #36
Mus_B	ANCESTRAL SPECIES	10	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00860000135975	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.m.b #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00390000009724.l.i.b.a.a.a	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00900000143783	ENSGT00730000111529 #29	ENSGT00900000143579	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00940000155526.b	ENSGT00390000006813.t	ENSGT00390000018272 #35	ENSGT00940000157538 #36
Mouse	MODERN SPECIES	1	Vezt (ENSMUSG00000036099)	Fgd6 (ENSMUSG00000020021)	Nr2c1 (ENSMUSG00000005897)	Ndufa12 (ENSMUSG00000020022) #7	Tmcc3 (ENSMUSG00000020023) #8	Cep83 (ENSMUSG00000020024) #9	Plxnc1 (ENSMUSG00000074785) #10	Cradd (ENSMUSG00000045867) #12	Socs2 (ENSMUSG00000020027) #13	Mrpl42 (ENSMUSG00000062981) #14	Ube2n (ENSMUSG00000074781) #15	Nudt4 (ENSMUSG00000020029) #16	Anapc15-ps (ENSMUSG00000074780)	Eea1 (ENSMUSG00000036499) #19	Gm5426 (ENSMUSG00000096486)	Btg1 (ENSMUSG00000036478) #22	Dcn (ENSMUSG00000019929) #25	Lum (ENSMUSG00000036446) #26	Kera (ENSMUSG00000019932) #27	Epyc (ENSMUSG00000019936) #28	Ccer1 (ENSMUSG00000047025) #29	Atp2b1 (ENSMUSG00000019943) #31	Poc1b (ENSMUSG00000019952) #32	Galnt4 (ENSMUSG00000090035)	Dusp6 (ENSMUSG00000019960) #33	Csl (ENSMUSG00000046934)	Kitl (ENSMUSG00000019966) #35	Gm4301 (ENSMUSG00000094314)	Gm4302 (ENSMUSG00000091101)	Gm4303 (ENSMUSG00000112931)	Gm4305 (ENSMUSG00000112856)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00860000135975	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.m.b #14	ENSGT00540000070023.c.a.a ##15	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00390000009724.l.i.b.a.b	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00900000143783	ENSGT00730000111529 #29	ENSGT00900000143579	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00940000155526.b	ENSGT00390000006813.t	ENSGT00390000018272 #35	ENSGT00940000157538 #36
Steppe mouse	MODERN SPECIES	3422	Tmcc3 (ENSMSIG00000016287) #8	Cep83 (ENSMSIG00000016257) #9	Plxnc1 (ENSMSIG00000016141) #10	Cradd (ENSMSIG00000016116) #12	ENSMSIG00000016093	ENSMSIG00000016056 #13	ENSMSIG00000016042	Mrpl42 (ENSMSIG00000015996) #14	ENSMSIG00000015978 ##15	ENSMSIG00000015960 #16	ENSMSIG00000015942	ENSMSIG00000015896	Eea1 (ENSMSIG00000015697) #19	Gm5426 (ENSMSIG00000015678)	ENSMSIG00000015647 #24	Btg1 (ENSMSIG00000015631) #22	ENSMSIG00000015628	Dcn (ENSMSIG00000015595) #25	Lum (ENSMSIG00000015574) #26	Kera (ENSMSIG00000015562) #27	Epyc (ENSMSIG00000015524) #28	Ccer1 (ENSMSIG00000015509) #29	ENSMSIG00000015503	Atp2b1 (ENSMSIG00000015351) #31	Poc1b (ENSMSIG00000015203) #32	Dusp6 (ENSMSIG00000015196) #33	ENSMSIG00000015181	ENSMSIG00000015162	ENSMSIG00000015150	Csl (ENSMSIG00000015137)	Kitl (ENSMSIG00000015054) #35
Ryukyu mouse	MODERN SPECIES	1	Fgd6 (MGP_CAROLIEiJ_G0015740)	Nr2c1 (MGP_CAROLIEiJ_G0015741)	Ndufa12 (MGP_CAROLIEiJ_G0015742) #7	MGP_CAROLIEiJ_G0015743	Tmcc3 (MGP_CAROLIEiJ_G0015744) #8	Cep83 (MGP_CAROLIEiJ_G0015745) #9	Plxnc1 (MGP_CAROLIEiJ_G0015746) #10	Cradd (MGP_CAROLIEiJ_G0015747) #12	Socs2 (MGP_CAROLIEiJ_G0015748) #13	MGP_CAROLIEiJ_G0015749	Mrpl42 (MGP_CAROLIEiJ_G0015750) #14	Ube2n (MGP_CAROLIEiJ_G0015751) #15	Nudt4 (MGP_CAROLIEiJ_G0015752) #16	Eea1 (MGP_CAROLIEiJ_G0015753) #19	MGP_CAROLIEiJ_G0015754	Btg1 (MGP_CAROLIEiJ_G0015755) #22	Dcn (MGP_CAROLIEiJ_G0015756) #25	Lum (MGP_CAROLIEiJ_G0015757) #26	Kera (MGP_CAROLIEiJ_G0015758) #27	Epyc (MGP_CAROLIEiJ_G0015759) #28	MGP_CAROLIEiJ_G0015760	Ccer1 (MGP_CAROLIEiJ_G0015761) #29	Atp2b1 (MGP_CAROLIEiJ_G0015762) #31	Poc1b (MGP_CAROLIEiJ_G0015763) #32	Galnt4 (MGP_CAROLIEiJ_G0015764)	Dusp6 (MGP_CAROLIEiJ_G0015765) #33	MGP_CAROLIEiJ_G0015766	Csl (MGP_CAROLIEiJ_G0015767)	Kitl (MGP_CAROLIEiJ_G0015768) #35	Tmtc3 (MGP_CAROLIEiJ_G0015769) #36	Cep290 (MGP_CAROLIEiJ_G0015770) #37
Shrew mouse	MODERN SPECIES	22	Metap2 (MGP_PahariEiJ_G0031347)	Vezt (MGP_PahariEiJ_G0031346)	Fgd6 (MGP_PahariEiJ_G0031345)	Nr2c1 (MGP_PahariEiJ_G0031344)	Ndufa12 (MGP_PahariEiJ_G0031343) #7	MGP_PahariEiJ_G0031342	Tmcc3 (MGP_PahariEiJ_G0031341) #8	Cep83 (MGP_PahariEiJ_G0031340) #9	Plxnc1 (MGP_PahariEiJ_G0031339) #10	Cradd (MGP_PahariEiJ_G0031338) #12	MGP_PahariEiJ_G0031337 #13	MGP_PahariEiJ_G0031336 #13	Mrpl42 (MGP_PahariEiJ_G0031335) #14	Ube2n (MGP_PahariEiJ_G0031334) #15	Eea1 (MGP_PahariEiJ_G0031333) #19	Btg1 (MGP_PahariEiJ_G0031332) #22	Dcn (MGP_PahariEiJ_G0031331) #25	Lum (MGP_PahariEiJ_G0031330) #26	Kera (MGP_PahariEiJ_G0031329) #27	Epyc (MGP_PahariEiJ_G0031328) #28	Ccer1 (MGP_PahariEiJ_G0031327) #29	MGP_PahariEiJ_G0031326	Atp2b1 (MGP_PahariEiJ_G0031325) #31	Galnt4 (MGP_PahariEiJ_G0031324)	Poc1b (MGP_PahariEiJ_G0031323) #32	Dusp6 (MGP_PahariEiJ_G0031322) #33	MGP_PahariEiJ_G0031321	Csl (MGP_PahariEiJ_G0031320)	Kitl (MGP_PahariEiJ_G0031319) #35	Tmtc3 (MGP_PahariEiJ_G0031318) #36	Cep290 (MGP_PahariEiJ_G0031317) #37
Rat	MODERN SPECIES	17	Fgd6 (ENSRNOG00000054515)	Nr2c1 (ENSRNOG00000006983)	Ndufa12 (ENSRNOG00000007407) #7	Tmcc3 (ENSRNOG00000007713) #8	LOC100363642 (ENSRNOG00000007859) #9	Plxnc1 (ENSRNOG00000007970) #10	Cradd (ENSRNOG00000008507) #12	LOC103690821 (ENSRNOG00000050393)	Socs2 (ENSRNOG00000008965) #13	Mrpl42 (ENSRNOG00000042740) #14	Ube2n (ENSRNOG00000058053) #15	Nudt4 (ENSRNOG00000009094) #16	AABR07056686.1 (ENSRNOG00000021688)	ENSRNOG00000063295	Eea1 (ENSRNOG00000021681) #19	Btg1 (ENSRNOG00000004284) #22	ENSRNOG00000068905	Dcn (ENSRNOG00000004554) #25	Lum (ENSRNOG00000004610) #26	Kera (ENSRNOG00000004635) #27	Epyc (ENSRNOG00000004717) #28	Ccer1 (ENSRNOG00000004875) #29	Atp2b1 (ENSRNOG00000004026) #31	Poc1b (ENSRNOG00000024450) #32	ENSRNOG00000069237	Dusp6 (ENSRNOG00000023896) #33	ENSRNOG00000067092	Kitlg (ENSRNOG00000005386) #35	Tmtc3 (ENSRNOG00000006749) #36	Cep290 (ENSRNOG00000056458) #37	RGD1307947 (ENSRNOG00000006973)
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT00940000161768.B	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00940000163385	ENSGT00920000149445	ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT01050000245028.C	ENSGT01050000245028.A	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.b.s	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000154400.b.d.b
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT00940000161768.B	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00920000149445.a	ENSGT00940000166354.a	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT01050000245028.C	ENSGT01050000245028.A	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.a.a.b	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000154400.b.d.b
Cricetinae	ANCESTRAL SPECIES	29	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT00940000161768.B	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00920000149445.a	ENSGT00940000166354.a	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT01050000245028.C	ENSGT01050000245028.A	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.a.a.b	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000154400.b.d.b	ENSGT00940000160686
Chinese hamster chok1gshd	MODERN SPECIES	16	ENSCGRG00001008147	Gria3 (ENSCGRG00001010277)	ENSCGRG00001000441	6030498E09Rik (ENSCGRG00001016358)	C1galt1c1 (ENSCGRG00001004167)	Mcts1 (ENSCGRG00001022838)	ENSCGRG00001000813	Lamp2 (ENSCGRG00001023305)	Tex13c3 (ENSCGRG00001016863)	Atp1b4 (ENSCGRG00001004737)	Tmem255a (ENSCGRG00001007359)	Zbtb33 (ENSCGRG00001007690)	Rhox12 (ENSCGRG00001000074)	ENSCGRG00001007488	ENSCGRG00001014368	ENSCGRG00001017971 #22	ENSCGRG00001000411	ENSCGRG00001019766	ENSCGRG00001009719	ENSCGRG00001016724	ENSCGRG00001015897	ENSCGRG00001012665	Rnf113a1 (ENSCGRG00001002251)	NDUFA1 (ENSCGRG00001004710)	Nkap (ENSCGRG00001013137)	ENSCGRG00001006858	ENSCGRG00001021449	Sowahd (ENSCGRG00001011517)	Septin6 (ENSCGRG00001014207)	Nkrf (ENSCGRG00001001105)	Ube2a (ENSCGRG00001007581)
Golden Hamster	MODERN SPECIES	761					C1galt1c1 (ENSMAUG00000015715)	Mcts1 (ENSMAUG00000000385)	Cul4b (ENSMAUG00000002566)	Lamp2 (ENSMAUG00000016372)	Tex13c3 (ENSMAUG00000001959)	Atp1b4 (ENSMAUG00000016959)	Tmem255a (ENSMAUG00000007801)	Zbtb33 (ENSMAUG00000008177)	Rhox12 (ENSMAUG00000012331)	ENSMAUG00000009678	Rhox10 (ENSMAUG00000017260)	ENSMAUG00000002213 #22	ENSMAUG00000004552	ENSMAUG00000016012	Ndufa1 (ENSMAUG00000000368)	Akap14 (ENSMAUG00000014839)	Nkap (ENSMAUG00000020220)	Upf3b (ENSMAUG00000008705)	ENSMAUG00000010952	Septin6 (ENSMAUG00000018038)	Nkrf (ENSMAUG00000021303)	Ube2a (ENSMAUG00000009245)	Steep1 (ENSMAUG00000019253)	Slc25a43 (ENSMAUG00000021574)	Akap17b (ENSMAUG00000001593)	Pgrmc1 (ENSMAUG00000009511)	ENSMAUG00000019877
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT00940000161768.B	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00920000149445.a	ENSGT00940000154287.a.g.b	ENSGT00940000166354.b	ENSGT00950000182952.C.xc.b #22
Northern American deer mouse	MODERN SPECIES	475	Thoc2 (ENSPEMG00000007626)	Gria3 (ENSPEMG00000020768)	ENSPEMG00000025713	ENSPEMG00000026463	C1galt1c1 (ENSPEMG00000003943)	Mcts1 (ENSPEMG00000014914)	Cul4b (ENSPEMG00000008902)	ENSPEMG00000030809	Tex13c3 (ENSPEMG00000006117)	Atp1b4 (ENSPEMG00000026754)	Tmem255a (ENSPEMG00000020511)	Zbtb33 (ENSPEMG00000023331)	ENSPEMG00000017846	ENSPEMG00000013786	ENSPEMG00000026490	ENSPEMG00000002101 #22	ENSPEMG00000025608	ENSPEMG00000017550	ENSPEMG00000029359	ENSPEMG00000027345	Pls3 (ENSPEMG00000000739)	ENSPEMG00000025081	Lrch2 (ENSPEMG00000023427)	ENSPEMG00000029813	ENSPEMG00000027327	ENSPEMG00000029369	Amot (ENSPEMG00000009135)	Lhfpl1 (ENSPEMG00000031060)	ENSPEMG00000026868	ENSPEMG00000026774	Rtl4 (ENSPEMG00000014794)
Murinae	ANCESTRAL SPECIES	72														ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22
Mus	ANCESTRAL SPECIES	9	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT00940000161768.B	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00940000163385	ENSGT00920000149445	ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT00730000112198.a.a	ENSGT00700000106005	ENSGT01050000245028.A	ENSGT01050000245028.C	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.b.s	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	23	Gria3 (MGP_PahariEiJ_G0031568)	6030498E09Rik (MGP_PahariEiJ_G0031567)	C1galt1c1 (MGP_PahariEiJ_G0031566)	Mcts1 (MGP_PahariEiJ_G0031565)	MGP_PahariEiJ_G0031564	Lamp2 (MGP_PahariEiJ_G0031563)	MGP_PahariEiJ_G0031562	Atp1b4 (MGP_PahariEiJ_G0031561)	Tmem255a (MGP_PahariEiJ_G0031560)	Zbtb33 (MGP_PahariEiJ_G0031559)	MGP_PahariEiJ_G0031558	Rhox12 (MGP_PahariEiJ_G0031557)	Rhox11 (MGP_PahariEiJ_G0031556)	Rhox10 (MGP_PahariEiJ_G0031555)	MGP_PahariEiJ_G0031554 #22	MGP_PahariEiJ_G0031553 #22	MGP_PahariEiJ_G0031552	MGP_PahariEiJ_G0031551	MGP_PahariEiJ_G0031550	MGP_PahariEiJ_G0031549	MGP_PahariEiJ_G0031548	Rnf113a1 (MGP_PahariEiJ_G0031547)	Ndufa1 (MGP_PahariEiJ_G0031546)	MGP_PahariEiJ_G0031545	Nkap (MGP_PahariEiJ_G0031544)	Upf3b (MGP_PahariEiJ_G0031543)	Rpl39 (MGP_PahariEiJ_G0031542)	Sowahd (MGP_PahariEiJ_G0031541)	MGP_PahariEiJ_G0031540	Nkrf (MGP_PahariEiJ_G0031539)	MGP_PahariEiJ_G0031538
Shrew mouse	MODERN SPECIES	23	Thoc2 (MGP_PahariEiJ_G0031569)	Gria3 (MGP_PahariEiJ_G0031568)	6030498E09Rik (MGP_PahariEiJ_G0031567)	C1galt1c1 (MGP_PahariEiJ_G0031566)	Mcts1 (MGP_PahariEiJ_G0031565)	MGP_PahariEiJ_G0031564	Lamp2 (MGP_PahariEiJ_G0031563)	MGP_PahariEiJ_G0031562	Atp1b4 (MGP_PahariEiJ_G0031561)	Tmem255a (MGP_PahariEiJ_G0031560)	Zbtb33 (MGP_PahariEiJ_G0031559)	MGP_PahariEiJ_G0031558	Rhox12 (MGP_PahariEiJ_G0031557)	Rhox11 (MGP_PahariEiJ_G0031556)	Rhox10 (MGP_PahariEiJ_G0031555)	MGP_PahariEiJ_G0031554 #22	MGP_PahariEiJ_G0031553 #22	MGP_PahariEiJ_G0031552	MGP_PahariEiJ_G0031551	MGP_PahariEiJ_G0031550	MGP_PahariEiJ_G0031549	MGP_PahariEiJ_G0031548	Rnf113a1 (MGP_PahariEiJ_G0031547)	Ndufa1 (MGP_PahariEiJ_G0031546)	MGP_PahariEiJ_G0031545	Nkap (MGP_PahariEiJ_G0031544)	Upf3b (MGP_PahariEiJ_G0031543)	Rpl39 (MGP_PahariEiJ_G0031542)	Sowahd (MGP_PahariEiJ_G0031541)	MGP_PahariEiJ_G0031540	Nkrf (MGP_PahariEiJ_G0031539)
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00940000163385	ENSGT00920000149445	ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT01050000245028.A.a.b	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.b.s	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000154400.b.d.a.a	ENSGT00940000160686
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00940000163385	ENSGT00920000149445	ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT01050000245028.A.a.b	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.b.s	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000154400.b.d.a.a	ENSGT00940000160686
Mus_C	ANCESTRAL SPECIES	27	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00940000163385	ENSGT00920000149445	ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT00700000106005	ENSGT01050000245028.A.a.b	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.b.s	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000160686
Steppe mouse	MODERN SPECIES	1512																ENSMSIG00000021326 #22
spretus	MODERN SPECIES	19	Xiap (MGP_SPRETEiJ_G0034182)	Thoc2 (MGP_SPRETEiJ_G0034181)	Gria3 (MGP_SPRETEiJ_G0034180)	6030498E09Rik (MGP_SPRETEiJ_G0034179)	C1galt1c1 (MGP_SPRETEiJ_G0034178)	Mcts1 (MGP_SPRETEiJ_G0034177)	Cul4b (MGP_SPRETEiJ_G0034176)	Lamp2 (MGP_SPRETEiJ_G0034175)	Atp1b4 (MGP_SPRETEiJ_G0034174)	Tmem255a (MGP_SPRETEiJ_G0034173)	Zbtb33 (MGP_SPRETEiJ_G0034172)	Rhox13 (MGP_SPRETEiJ_G0034171)	Rhox12 (MGP_SPRETEiJ_G0034170)	Rhox11 (MGP_SPRETEiJ_G0034169)	MGP_SPRETEiJ_G0034168	MGP_SPRETEiJ_G0034166 #22	MGP_SPRETEiJ_G0034165	MGP_SPRETEiJ_G0034164	MGP_SPRETEiJ_G0034163	MGP_SPRETEiJ_G0034162	MGP_SPRETEiJ_G0034161	MGP_SPRETEiJ_G0034160	MGP_SPRETEiJ_G0034159	Rhox1 (MGP_SPRETEiJ_G0034158)	Gm9 (MGP_SPRETEiJ_G0034157)	Rnf113a1 (MGP_SPRETEiJ_G0034156)	Ndufa1 (MGP_SPRETEiJ_G0034155)	Akap14 (MGP_SPRETEiJ_G0034154)	Nkap (MGP_SPRETEiJ_G0034153)	Upf3b (MGP_SPRETEiJ_G0034152)	Rpl39 (MGP_SPRETEiJ_G0034151)
Ryukyu mouse	MODERN SPECIES	19	Thoc2 (MGP_CAROLIEiJ_G0033023)	Gria3 (MGP_CAROLIEiJ_G0033022)	6030498E09Rik (MGP_CAROLIEiJ_G0033021)	C1galt1c1 (MGP_CAROLIEiJ_G0033020)	Mcts1 (MGP_CAROLIEiJ_G0033019)	Cul4b (MGP_CAROLIEiJ_G0033018)	Lamp2 (MGP_CAROLIEiJ_G0033017)	MGP_CAROLIEiJ_G0033016	MGP_CAROLIEiJ_G0033015	Tmem255a (MGP_CAROLIEiJ_G0033014)	Zbtb33 (MGP_CAROLIEiJ_G0033013)	Rhox13 (MGP_CAROLIEiJ_G0033012)	Rhox12 (MGP_CAROLIEiJ_G0033011)	Rhox11 (MGP_CAROLIEiJ_G0033010)	Rhox10 (MGP_CAROLIEiJ_G0033009)	MGP_CAROLIEiJ_G0033007 #22	Rhox6 (MGP_CAROLIEiJ_G0033005)	MGP_CAROLIEiJ_G0033004	MGP_CAROLIEiJ_G0033003	Gm9 (MGP_CAROLIEiJ_G0033002)	MGP_CAROLIEiJ_G0033001	Nkap (MGP_CAROLIEiJ_G0033000)	Upf3b (MGP_CAROLIEiJ_G0032999)	MGP_CAROLIEiJ_G0032998	Sowahd (MGP_CAROLIEiJ_G0032997)	Septin6 (MGP_CAROLIEiJ_G0032996)	Nkrf (MGP_CAROLIEiJ_G0032995)	MGP_CAROLIEiJ_G0032994	Steep1 (MGP_CAROLIEiJ_G0032993)	Slc25a5 (MGP_CAROLIEiJ_G0032992)	Slc25a43 (MGP_CAROLIEiJ_G0032991)
Rat	DUPLICATION
Rat	MODERN SPECIES	46	AABR07038676.1 (ENSRNOG00000028202)	RGD1560124 (ENSRNOG00000063278)	LOC691215 (ENSRNOG00000028189)	C1galt1c1 (ENSRNOG00000069353)	Mcts1 (ENSRNOG00000002563)	Cul4b (ENSRNOG00000002585)	LOC100360128 (ENSRNOG00000068620)	Lamp2 (ENSRNOG00000000164)	Atp1b4 (ENSRNOG00000007059)	Tmem255a (ENSRNOG00000028085)	Zbtb33 (ENSRNOG00000028899)	Rhox13 (ENSRNOG00000028050)	Rhox12 (ENSRNOG00000040033)	Rhox11 (ENSRNOG00000028044)	Rhox10 (ENSRNOG00000040026)	Btg1b (ENSRNOG00000047100) #22	RGD1566035 (ENSRNOG00000030645)	Btg1c (ENSRNOG00000032390) #22	ENSRNOG00000065266	LOC691272 (ENSRNOG00000043229)	ENSRNOG00000070384	Rhox9 (ENSRNOG00000050457)	Rhox7 (ENSRNOG00000063283)	Rhox8 (ENSRNOG00000031534)	ENSRNOG00000070486	LOC100364002 (ENSRNOG00000052383)	Rhox5 (ENSRNOG00000046548)	Rhoxf2b (ENSRNOG00000040013)	Rhox3 (ENSRNOG00000053351)	Rhox4g (ENSRNOG00000058333)	RGD1560927 (ENSRNOG00000040008)
Rat	MODERN SPECIES	46	LOC691215 (ENSRNOG00000028189)	C1galt1c1 (ENSRNOG00000069353)	Mcts1 (ENSRNOG00000002563)	Cul4b (ENSRNOG00000002585)	LOC100360128 (ENSRNOG00000068620)	Lamp2 (ENSRNOG00000000164)	Atp1b4 (ENSRNOG00000007059)	Tmem255a (ENSRNOG00000028085)	Zbtb33 (ENSRNOG00000028899)	Rhox13 (ENSRNOG00000028050)	Rhox12 (ENSRNOG00000040033)	Rhox11 (ENSRNOG00000028044)	Rhox10 (ENSRNOG00000040026)	Btg1b (ENSRNOG00000047100) #22	RGD1566035 (ENSRNOG00000030645)	Btg1c (ENSRNOG00000032390) #22	ENSRNOG00000065266	LOC691272 (ENSRNOG00000043229)	ENSRNOG00000070384	Rhox9 (ENSRNOG00000050457)	Rhox7 (ENSRNOG00000063283)	Rhox8 (ENSRNOG00000031534)	ENSRNOG00000070486	LOC100364002 (ENSRNOG00000052383)	Rhox5 (ENSRNOG00000046548)	Rhoxf2b (ENSRNOG00000040013)	Rhox3 (ENSRNOG00000053351)	Rhox4g (ENSRNOG00000058333)	RGD1560927 (ENSRNOG00000040008)	Rnf113a1 (ENSRNOG00000066548)	Ndufa1 (ENSRNOG00000071176)
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Murinae	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Mus	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Mus_A	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Steppe mouse	MODERN SPECIES	1289																ENSMSIG00000008736 #22
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	408	Nsdhl (ENSDORG00000000136)	Cetn2 (ENSDORG00000000131)	Gabrq (ENSDORG00000001417)	Gabra3 (ENSDORG00000003322)	ENSDORG00000005056	Cnga2 (ENSDORG00000002366)	Fate1 (ENSDORG00000002365)	Prrg3 (ENSDORG00000002364)	Vma21 (ENSDORG00000026433)	Gpr50 (ENSDORG00000000063)	Hmgb3 (ENSDORG00000010826)	Cd99l2 (ENSDORG00000010822)	Mtmr1 (ENSDORG00000010821)	Mtm1 (ENSDORG00000010820)	Mamld1 (ENSDORG00000027915)	ENSDORG00000010633 #22	Tmem185a (ENSDORG00000015027)	Ids (ENSDORG00000026027)	Aff2 (ENSDORG00000015215)	Fmr1 (ENSDORG00000012501)	Slitrk2 (ENSDORG00000000545)	ENSDORG00000005920	Slitrk4 (ENSDORG00000001489)	ENSDORG00000026987	Ldoc1 (ENSDORG00000011028)	Sox3 (ENSDORG00000027035)	ENSDORG00000027706	ENSDORG00000027206	ENSDORG00000026314	Atp11c (ENSDORG00000003661)	Mcf2 (ENSDORG00000006306)
Kangaroo rat	MODERN SPECIES	322	Vezt (ENSDORG00000006065)	Fgd6 (ENSDORG00000006064)	Nr2c1 (ENSDORG00000004257)	Ndufa12 (ENSDORG00000001500) #7	Tmcc3 (ENSDORG00000008687) #8	Cep83 (ENSDORG00000012104) #9	ENSDORG00000025370 ##10	ENSDORG00000025182	Cradd (ENSDORG00000011678) #12	Socs2 (ENSDORG00000026257) #13	Mrpl42 (ENSDORG00000015571) #14	Ube2n (ENSDORG00000000650) #15	Nudt4 (ENSDORG00000025760) #16	ENSDORG00000024294	Eea1 (ENSDORG00000008811) #19	ENSDORG00000013710 #22	Dcn (ENSDORG00000009079) #25	Lum (ENSDORG00000005986) #26	Kera (ENSDORG00000005985) #27	Epyc (ENSDORG00000005984) #28	Ccer1 (ENSDORG00000028218) #29	Atp2b1 (ENSDORG00000000718) #31	Poc1b (ENSDORG00000013903) #32	Dusp6 (ENSDORG00000025322) #33	Kitl (ENSDORG00000011078) #35	Tmtc3 (ENSDORG00000016561) #36	ENSDORG00000027173	Cep290 (ENSDORG00000015894) #37	4930430F08Rik (ENSDORG00000015893)	1700017N19Rik (ENSDORG00000015892)	Mgat4c (ENSDORG00000025545)
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983.e.a #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b.f #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983.e.a #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b.f #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Guinea pig	MODERN SPECIES	9	VEZT (ENSCPOG00000009336)	FGD6 (ENSCPOG00000012303)	NR2C1 (ENSCPOG00000007507)	NDUFA12 (ENSCPOG00000010154) #7	ENSCPOG00000019272	TMCC3 (ENSCPOG00000034352) #8	CEP83 (ENSCPOG00000008997) #9	PLXNC1 (ENSCPOG00000008984) #10	CRADD (ENSCPOG00000039871) #12	SOCS2 (ENSCPOG00000008235) #13	ENSCPOG00000030015 #14	ENSCPOG00000008581 ##15	ENSCPOG00000008578 #16	EEA1 (ENSCPOG00000014506) #19	PLEKHG7 (ENSCPOG00000014503) #20	BTG1 (ENSCPOG00000040699) #22	DCN (ENSCPOG00000034660) #25	LUM (ENSCPOG00000036998) #26	KERA (ENSCPOG00000000675) #27	EPYC (ENSCPOG00000006137) #28	CCER1 (ENSCPOG00000023502) #29	ENSCPOG00000040691	ATP2B1 (ENSCPOG00000015527) #31	POC1B (ENSCPOG00000015525) #32	DUSP6 (ENSCPOG00000030214) #33	KITLG (ENSCPOG00000031249) #35	TMTC3 (ENSCPOG00000012492) #36	CEP290 (ENSCPOG00000033255) #37	C12orf29 (ENSCPOG00000039127)	C12orf50 (ENSCPOG00000012468)	MGAT4C (ENSCPOG00000013992)
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983.e.a #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b.f #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Long-tailed chinchilla	MODERN SPECIES	112	VEZT (ENSCLAG00000011358)	FGD6 (ENSCLAG00000010121)	NR2C1 (ENSCLAG00000007935)	NDUFA12 (ENSCLAG00000004709) #7	TMCC3 (ENSCLAG00000007987) #8	CEP83 (ENSCLAG00000007562) #9	PLXNC1 (ENSCLAG00000015691) #10	CRADD (ENSCLAG00000015937) #12	SOCS2 (ENSCLAG00000007099) #13	MRPL42 (ENSCLAG00000005421) #14	UBE2N (ENSCLAG00000005227) #15	ENSCLAG00000012848 #16	ENSCLAG00000011699	EEA1 (ENSCLAG00000006113) #19	ENSCLAG00000005133 #20	BTG1 (ENSCLAG00000004687) #22	DCN (ENSCLAG00000011478) #25	LUM (ENSCLAG00000009704) #26	KERA (ENSCLAG00000008374) #27	EPYC (ENSCLAG00000008177) #28	CCER1 (ENSCLAG00000014412) #29	ATP2B1 (ENSCLAG00000009579) #31	POC1B (ENSCLAG00000006831) #32	DUSP6 (ENSCLAG00000005856) #33	KITLG (ENSCLAG00000006139) #35	TMTC3 (ENSCLAG00000005406) #36	CEP290 (ENSCLAG00000006047) #37	C12orf29 (ENSCLAG00000004653)	C12orf50 (ENSCLAG00000006991)	MGAT4C (ENSCLAG00000008726)	NTS (ENSCLAG00000007844)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000045053	CEP83 (ENSHGLG00000005240) #9	ENSHGLG00000014443	ENSHGLG00000042288	PLXNC1 (ENSHGLG00000005788) #10	CRADD (ENSHGLG00000040480) #12	ENSHGLG00000006324 #13	ENSHGLG00000042799	MRPL42 (ENSHGLG00000007399) #14	ENSHGLG00000008071 #15	ENSHGLG00000045354 #16	ENSHGLG00000001665	EEA1 (ENSHGLG00000004855) #19	PLEKHG7 (ENSHGLG00000037576) #20	ENSHGLG00000042071	ENSHGLG00000007207 #22	DCN (ENSHGLG00000008166) #25	LUM (ENSHGLG00000009566) #26	KERA (ENSHGLG00000010458) #27	ENSHGLG00000004737 #28	ENSHGLG00000046116	ENSHGLG00000004778	ENSHGLG00000042775	ENSHGLG00000005908	ENSHGLG00000007341 #31	ENSHGLG00000040482	ENSHGLG00000014556 #32	GALNT4 (ENSHGLG00000040214)	ENSHGLG00000047274	ENSHGLG00000045262	ENSHGLG00000042430
Naked mole-rat female	MODERN SPECIES	30	PGGHG (ENSHGLG00000015446)	ENSHGLG00000017176	PSMD13 (ENSHGLG00000017609)	SIRT3 (ENSHGLG00000017649)	RIC8A (ENSHGLG00000018718)	BET1L (ENSHGLG00000049253)	ODF3 (ENSHGLG00000017967)	ENSHGLG00000017977	ENSHGLG00000008863	ENSHGLG00000000614	ENSHGLG00000042162	ENSHGLG00000000399	ENSHGLG00000009321	ENSHGLG00000009379	ENSHGLG00000048422	ENSHGLG00000004775 #22	ENSHGLG00000036302	ENSHGLG00000036746	ENSHGLG00000013205	VGLL2 (ENSHGLG00000048393)	RFX6 (ENSHGLG00000019573)	GPRC6A (ENSHGLG00000036750)	ENSHGLG00000008946	KPNA5 (ENSHGLG00000007645)	ENSHGLG00000009896	ENSHGLG00000002525	ENSHGLG00000049438	ENSHGLG00000035661	ENSHGLG00000050402	ENSHGLG00000005874	ENSHGLG00000016052
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.e #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Eurasian red squirrel	MODERN SPECIES	14	TMCC3 (ENSSVLG00005004280) #8	CEP83 (ENSSVLG00005004243) #9	PLXNC1 (ENSSVLG00005004224) #10	CRADD (ENSSVLG00005004194) #12	SOCS2 (ENSSVLG00005004170) #13	ENSSVLG00005004158	ENSSVLG00005004136 #14	ENSSVLG00005004122	UBE2N (ENSSVLG00005004108) #15	ENSSVLG00005004086 #16	ENSSVLG00005004071	ENSSVLG00005004057	EEA1 (ENSSVLG00005004013) #19	ENSSVLG00005003978 #20	ENSSVLG00005003961	BTG1 (ENSSVLG00005003939) #22	DCN (ENSSVLG00005003889) #25	LUM (ENSSVLG00005003829) #26	KERA (ENSSVLG00005003814) #27	EPYC (ENSSVLG00005003799) #28	CCER1 (ENSSVLG00005003787) #29	ENSSVLG00005003775	ATP2B1 (ENSSVLG00005003665) #31	POC1B (ENSSVLG00005003557) #32	DUSP6 (ENSSVLG00005003537) #33	ENSSVLG00005003526	KITLG (ENSSVLG00005003404) #35	TMTC3 (ENSSVLG00005003348) #36	CEP290 (ENSSVLG00005003075) #37	ENSSVLG00005002975	C12orf50 (ENSSVLG00005002902)
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.e.a #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00390000009130.a.a.b.h	ENSGT00940000155352
Alpin marmot	MODERN SPECIES	11	FGD6 (ENSMMMG00000020186)	NR2C1 (ENSMMMG00000020203)	NDUFA12 (ENSMMMG00000020249) #7	TMCC3 (ENSMMMG00000020256) #8	ENSMMMG00000020271	CEP83 (ENSMMMG00000020275) #9	PLXNC1 (ENSMMMG00000020295) #10	CRADD (ENSMMMG00000020454) #12	SOCS2 (ENSMMMG00000020455) #13	ENSMMMG00000020461 #14	ENSMMMG00000020474 ##15	ENSMMMG00000020505 #16	EEA1 (ENSMMMG00000020523) #19	ENSMMMG00000020545 #20	ENSMMMG00000020551	BTG1 (ENSMMMG00000020559) #22	DCN (ENSMMMG00000020572) #25	LUM (ENSMMMG00000020574) #26	KERA (ENSMMMG00000020583) #27	EPYC (ENSMMMG00000020588) #28	CCER1 (ENSMMMG00000020597) #29	ATP2B1 (ENSMMMG00000020615) #31	POC1B (ENSMMMG00000020630) #32	DUSP6 (ENSMMMG00000020660) #33	KITLG (ENSMMMG00000000026) #35	ENSMMMG00000000046	TMTC3 (ENSMMMG00000000074) #36	CEP290 (ENSMMMG00000000165) #37	C12orf29 (ENSMMMG00000000596)	C12orf50 (ENSMMMG00000000632)	ENSMMMG00000000830
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.e.a #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00390000009130.a.a.b.h	ENSGT00940000155352
Arctic ground squirrel	MODERN SPECIES	6	VEZT (ENSUPAG00010006572)	FGD6 (ENSUPAG00010006610)	NR2C1 (ENSUPAG00010006765)	NDUFA12 (ENSUPAG00010006899) #7	TMCC3 (ENSUPAG00010006912) #8	CEP83 (ENSUPAG00010006959) #9	PLXNC1 (ENSUPAG00010006977) #10	CRADD (ENSUPAG00010007012) #12	SOCS2 (ENSUPAG00010007030) #13	ENSUPAG00010007046 #14	ENSUPAG00010007081 ##15	ENSUPAG00010007093 #16	EEA1 (ENSUPAG00010007100) #19	ENSUPAG00010007127 #20	ENSUPAG00010007147	BTG1 (ENSUPAG00010007152) #22	DCN (ENSUPAG00010007176) #25	LUM (ENSUPAG00010007216) #26	KERA (ENSUPAG00010007225) #27	EPYC (ENSUPAG00010007237) #28	CCER1 (ENSUPAG00010007261) #29	ATP2B1 (ENSUPAG00010007267) #31	POC1B (ENSUPAG00010007342) #32	DUSP6 (ENSUPAG00010007403) #33	KITLG (ENSUPAG00010007417) #35	TMTC3 (ENSUPAG00010007444) #36	CEP290 (ENSUPAG00010007458) #37	C12orf29 (ENSUPAG00010007666)	C12orf50 (ENSUPAG00010007681)	ENSUPAG00010007903
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	591																ENSSTOG00000019635 #22
Squirrel	MODERN SPECIES	107	USP44 (ENSSTOG00000023944)	METAP2 (ENSSTOG00000006960)	VEZT (ENSSTOG00000016388)	FGD6 (ENSSTOG00000016385)	NR2C1 (ENSSTOG00000027488)	TMCC3 (ENSSTOG00000015074) #8	CEP83 (ENSSTOG00000000737) #9	PLXNC1 (ENSSTOG00000000728) #10	ENSSTOG00000021839	CRADD (ENSSTOG00000012496) #12	SOCS2 (ENSSTOG00000012493) #13	MRPL42 (ENSSTOG00000026544) #14	ENSSTOG00000002166 ##15	ENSSTOG00000020306 #16	EEA1 (ENSSTOG00000001792) #19	ENSSTOG00000010616 #22	DCN (ENSSTOG00000008917) #25	LUM (ENSSTOG00000008915) #26	KERA (ENSSTOG00000011961) #27	EPYC (ENSSTOG00000023957) #28	CCER1 (ENSSTOG00000031809) #29	ATP2B1 (ENSSTOG00000016072) #31	POC1B (ENSSTOG00000006306) #32	DUSP6 (ENSSTOG00000006279) #33	KITLG (ENSSTOG00000031402) #35	ENSSTOG00000031881	TMTC3 (ENSSTOG00000004530) #36	CEP290 (ENSSTOG00000004444) #37	C12orf29 (ENSSTOG00000021949)	C12orf50 (ENSSTOG00000004396)	ENSSTOG00000032276
Lagomorpha	ANCESTRAL SPECIES	22	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000154527.a.a.b	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Rabbit	MODERN SPECIES	15	VEZT (ENSOCUG00000008792)	ENSOCUG00000022191 ##23	FGD6 (ENSOCUG00000004665)	NR2C1 (ENSOCUG00000004657)	NDUFA12 (ENSOCUG00000033569) #7	TMCC3 (ENSOCUG00000008619) #8	CEP83 (ENSOCUG00000016919) #9	ENSOCUG00000016904 #10	ENSOCUG00000039373	SOCS2 (ENSOCUG00000010937) #13	ENSOCUG00000010928 #14	UBE2N (ENSOCUG00000011287) #15	ENSOCUG00000011283 #16	EEA1 (ENSOCUG00000009295) #19	PLEKHG7 (ENSOCUG00000009290) #20	BTG1 (ENSOCUG00000008223) #22	DCN (ENSOCUG00000006969) #25	LUM (ENSOCUG00000005592) #26	KERA (ENSOCUG00000013394) #27	EPYC (ENSOCUG00000013389) #28	CCER1 (ENSOCUG00000013386) #29	ENSOCUG00000030126	ATP2B1 (ENSOCUG00000016507) #31	ENSOCUG00000012940	POC1B (ENSOCUG00000008219) #32	DUSP6 (ENSOCUG00000002902) #33	KITLG (ENSOCUG00000017687) #35	TMTC3 (ENSOCUG00000004320) #36	CEP290 (ENSOCUG00000004290) #37	C12orf29 (ENSOCUG00000004284)	C12orf50 (ENSOCUG00000004280)
Pika	MODERN SPECIES	8434																BTG1 (ENSOPRG00000005730) #22
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00540000073882	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182952.C #22
Common shrew	MODERN SPECIES	2253																BTG1 (ENSSARG00000004768) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00540000073882	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00540000073882	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00950000185173	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Felidae	ANCESTRAL SPECIES	2	ENSGT00940000158165	ENSGT00390000005848.n #7	ENSGT00940000157275 #8	ENSGT00950000185173	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00950000183087.A.b.a.b.b.a.a	ENSGT00390000010491.lb.b.a #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Panthera	ANCESTRAL SPECIES		ENSGT00940000158165	ENSGT00390000005848.n #7	ENSGT00940000157275 #8	ENSGT00950000185173	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00950000183087.A.b.a.b.b.a.a	ENSGT00390000010491.lb.b.a.b #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00940000158165	ENSGT00390000005848.n #7	ENSGT00940000157275 #8	ENSGT00950000185173	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00900000143786	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00950000183087.A.b.a.b.b.a.a	ENSGT00390000010491.lb.b.a.b #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
lion	MODERN SPECIES	7	METAP2 (ENSPLOG00000011232)	VEZT (ENSPLOG00000011105)	FGD6 (ENSPLOG00000010832)	NR2C1 (ENSPLOG00000010742)	NDUFA12 (ENSPLOG00000005399) #7	TMCC3 (ENSPLOG00000005312) #8	CEP83 (ENSPLOG00000005293) #9	PLXNC1 (ENSPLOG00000005206) #10	CRADD (ENSPLOG00000005166) #12	SOCS2 (ENSPLOG00000005147) #13	ENSPLOG00000005119	ENSPLOG00000005096 #14	UBE2N (ENSPLOG00000005059) #15	ENSPLOG00000005018 #16	EEA1 (ENSPLOG00000004979) #19	BTG1 (ENSPLOG00000004929) #22	DCN (ENSPLOG00000004902) #25	LUM (ENSPLOG00000004883) #26	KERA (ENSPLOG00000004874) #27	EPYC (ENSPLOG00000004861) #28	CCER1 (ENSPLOG00000004853) #29	ATP2B1 (ENSPLOG00000004810) #31	POC1B (ENSPLOG00000004776) #32	DUSP6 (ENSPLOG00000004748) #33	KITLG (ENSPLOG00000004722) #35	TMTC3 (ENSPLOG00000004704) #36	CEP290 (ENSPLOG00000004652) #37	C12orf29 (ENSPLOG00000004634)	C12orf50 (ENSPLOG00000004616)	ENSPLOG00000004594	MGAT4C (ENSPLOG00000004588)
leopard	MODERN SPECIES	13	NR2C1 (ENSPPRG00000000725)	ENSPPRG00000001562 #7	TMCC3 (ENSPPRG00000002306) #8	ENSPPRG00000002956	CEP83 (ENSPPRG00000005368) #9	PLXNC1 (ENSPPRG00000008196) #10	ENSPPRG00000009352	CRADD (ENSPPRG00000009591) #12	SOCS2 (ENSPPRG00000010190) #13	ENSPPRG00000012745	ENSPPRG00000013218 #14	ENSPPRG00000015222 ##15	ENSPPRG00000016358 #16	EEA1 (ENSPPRG00000017365) #19	ENSPPRG00000021645 #20	BTG1 (ENSPPRG00000023181) #22	DCN (ENSPPRG00000001125) #25	LUM (ENSPPRG00000001526) #26	KERA (ENSPPRG00000001587) #27	EPYC (ENSPPRG00000001902) #28	CCER1 (ENSPPRG00000018868) #29	ATP2B1 (ENSPPRG00000005222) #31	POC1B (ENSPPRG00000006168) #32	DUSP6 (ENSPPRG00000006553) #33	KITLG (ENSPPRG00000007405) #35	TMTC3 (ENSPPRG00000008299) #36	CEP290 (ENSPPRG00000018162) #37	C12orf29 (ENSPPRG00000020648)	C12orf50 (ENSPPRG00000022434)
Tiger	MODERN SPECIES	229	VEZT (ENSPTIG00000019201)	FGD6 (ENSPTIG00000017264)	NR2C1 (ENSPTIG00000014243)	ENSPTIG00000013446 #7	TMCC3 (ENSPTIG00000012501) #8	CEP83 (ENSPTIG00000008825) #9	ENSPTIG00000005416 #10	CRADD (ENSPTIG00000000280) #12	SOCS2 (ENSPTIG00000020683) #13	ENSPTIG00000020342	ENSPTIG00000019099 #14	ENSPTIG00000018236 ##15	ENSPTIG00000016745 #16	EEA1 (ENSPTIG00000013727) #19	ENSPTIG00000012108 #20	BTG1 (ENSPTIG00000003723) #22	DCN (ENSPTIG00000010183) #25	LUM (ENSPTIG00000009273) #26	KERA (ENSPTIG00000009124) #27	EPYC (ENSPTIG00000008648) #28	ATP2B1 (ENSPTIG00000005250) #31	POC1B (ENSPTIG00000019536) #32	DUSP6 (ENSPTIG00000017946) #33	ENSPTIG00000014354	TMTC3 (ENSPTIG00000013419) #36	CEP290 (ENSPTIG00000022025) #37	C12orf29 (ENSPTIG00000021960)	C12orf50 (ENSPTIG00000021703)	MGAT4C (ENSPTIG00000021224)	NTS (ENSPTIG00000020009)	RASSF9 (ENSPTIG00000019594)
Cat	MODERN SPECIES	238	ENSFCAG00000045925	VEZT (ENSFCAG00000008353)	FGD6 (ENSFCAG00000008351)	NR2C1 (ENSFCAG00000026108)	ENSFCAG00000023050 #7	TMCC3 (ENSFCAG00000009894) #8	CEP83 (ENSFCAG00000027845) #9	PLXNC1 (ENSFCAG00000036479) #10	ENSFCAG00000051463	SOCS2 (ENSFCAG00000029868) #13	ENSFCAG00000022343	ENSFCAG00000037907 #14	UBE2N (ENSFCAG00000004260) #15	ENSFCAG00000025933 #16	EEA1 (ENSFCAG00000022916) #19	BTG1 (ENSFCAG00000043871) #22	DCN (ENSFCAG00000022438) #25	LUM (ENSFCAG00000003764) #26	KERA (ENSFCAG00000041006) #27	EPYC (ENSFCAG00000027187) #28	CCER1 (ENSFCAG00000026894) #29	ATP2B1 (ENSFCAG00000007626) #31	POC1B (ENSFCAG00000007623) #32	DUSP6 (ENSFCAG00000029747) #33	KITLG (ENSFCAG00000028734) #35	ENSFCAG00000050203	TMTC3 (ENSFCAG00000025680) #36	CEP290 (ENSFCAG00000028019) #37	CB4H12orf29 (ENSFCAG00000000699)	CB4H12orf50 (ENSFCAG00000022045)	ENSFCAG00000051429
Caniformia	ANCESTRAL SPECIES	20	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00950000185173	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00950000185930	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Canidae	ANCESTRAL SPECIES	12	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00950000185930	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155052.e.b.b.c.a	ENSGT00940000155352
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00950000185930	ENSGT00390000014448 #12	ENSGT00940000157983.c #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000164524	ENSGT00940000155052.e.a
Dog	MODERN SPECIES	6	METAP2 (ENSCAFG00845023414)	VEZT (ENSCAFG00845023106)	FGD6 (ENSCAFG00845022871)	NR2C1 (ENSCAFG00845022744)	NDUFA12 (ENSCAFG00845022634) #7	TMCC3 (ENSCAFG00845022396) #8	CEP83 (ENSCAFG00845022275) #9	PLXNC1 (ENSCAFG00845021595) #10	ENSCAFG00845021424	CRADD (ENSCAFG00845021328) #12	ENSCAFG00845021192 #13	MRPL42 (ENSCAFG00845021094) #14	UBE2N (ENSCAFG00845021013) #15	NUDT4 (ENSCAFG00845020960) #16	EEA1 (ENSCAFG00845020208) #19	BTG1 (ENSCAFG00845020084) #22	ENSCAFG00845020040	DCN (ENSCAFG00845019761) #25	LUM (ENSCAFG00845019701) #26	KERA (ENSCAFG00845019646) #27	EPYC (ENSCAFG00845019572) #28	CCER1 (ENSCAFG00845019552) #29	ATP2B1 (ENSCAFG00845019043) #31	POC1B (ENSCAFG00845018770) #32	DUSP6 (ENSCAFG00845018644) #33	KITLG (ENSCAFG00845018506) #35	TMTC3 (ENSCAFG00845018327) #36	CEP290 (ENSCAFG00845017266) #37	C15H12orf29 (ENSCAFG00845016711)	C15H12orf50 (ENSCAFG00845016524)	ENSCAFG00845016472
Dingo	MODERN SPECIES	277	ENSCAFG00020023187	FGD6 (ENSCAFG00020023183)	NR2C1 (ENSCAFG00020023077)	NDUFA12 (ENSCAFG00020023057) #7	TMCC3 (ENSCAFG00020023056) #8	CEP83 (ENSCAFG00020023051) #9	PLXNC1 (ENSCAFG00020023009) #10	ENSCAFG00020022981	ENSCAFG00020022976 #12	SOCS2 (ENSCAFG00020022971) #13	MRPL42 (ENSCAFG00020022967) #14	ENSCAFG00020022966 ##15	ENSCAFG00020022964 #16	ENSCAFG00020022963	EEA1 (ENSCAFG00020022666) #19	BTG1 (ENSCAFG00020022634) #22	DCN (ENSCAFG00020022624) #25	LUM (ENSCAFG00020022621) #26	KERA (ENSCAFG00020022620) #27	EPYC (ENSCAFG00020022615) #28	CCER1 (ENSCAFG00020022614) #29	ATP2B1 (ENSCAFG00020016571) #31	POC1B (ENSCAFG00020016403) #32	DUSP6 (ENSCAFG00020016400) #33	ENSCAFG00020016396 #35	ENSCAFG00020016394 #35	TMTC3 (ENSCAFG00020016371) #36	CEP290 (ENSCAFG00020016258) #37	C12orf29 (ENSCAFG00020016248)	C12orf50 (ENSCAFG00020016242)	ENSCAFG00020016235
Red fox	MODERN SPECIES	9					TMCC3 (ENSVVUG00000012324) #8	CEP83 (ENSVVUG00000012315) #9	PLXNC1 (ENSVVUG00000011903) #10	ENSVVUG00000011872	CRADD (ENSVVUG00000011866) #12	ENSVVUG00000011846 #13	MRPL42 (ENSVVUG00000011842) #14	ENSVVUG00000011840 ##15	NUDT4 (ENSVVUG00000011834) #16	EEA1 (ENSVVUG00000011772) #19	ENSVVUG00000011745	BTG1 (ENSVVUG00000011741) #22	DCN (ENSVVUG00000011722) #25	LUM (ENSVVUG00000011715) #26	KERA (ENSVVUG00000011712) #27	EPYC (ENSVVUG00000011701) #28	CCER1 (ENSVVUG00000011693) #29	ATP2B1 (ENSVVUG00000011650) #31	ENSVVUG00000011636 #32	ENSVVUG00000011627 #32	DUSP6 (ENSVVUG00000011620) #33	KITLG (ENSVVUG00000011565) #35	TMTC3 (ENSVVUG00000011546) #36	CEP290 (ENSVVUG00000011505) #37	C12orf29 (ENSVVUG00000011487)	C12orf50 (ENSVVUG00000011456)	ENSVVUG00000011423
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00950000185173	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00950000185930	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C #22	ENSGT00940000158382.d #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00950000185930	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.d.m.b ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C #22	ENSGT00940000158382.d #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Ferret	MODERN SPECIES	185	VEZT (ENSMPUG00000007304)	FGD6 (ENSMPUG00000007314)	NR2C1 (ENSMPUG00000007335)	NDUFA12 (ENSMPUG00000007354) #7	TMCC3 (ENSMPUG00000007383) #8	CEP83 (ENSMPUG00000007387) #9	ENSMPUG00000007401 #10	ENSMPUG00000007413 #10	ENSMPUG00000007427	CRADD (ENSMPUG00000007433) #12	ENSMPUG00000018718	SOCS2 (ENSMPUG00000007443) #13	ENSMPUG00000007452 ##15	ENSMPUG00000007490 #16	EEA1 (ENSMPUG00000007498) #19	BTG1 (ENSMPUG00000007519) #22	DCN (ENSMPUG00000007528) #25	LUM (ENSMPUG00000007539) #26	KERA (ENSMPUG00000007541) #27	EPYC (ENSMPUG00000007552) #28	CCER1 (ENSMPUG00000018720) #29	ATP2B1 (ENSMPUG00000007566) #31	POC1B (ENSMPUG00000007581) #32	ENSMPUG00000007590	DUSP6 (ENSMPUG00000007599) #33	KITLG (ENSMPUG00000007604) #35	TMTC3 (ENSMPUG00000007613) #36	CEP290 (ENSMPUG00000007620) #37	C12orf29 (ENSMPUG00000007654)	C12orf50 (ENSMPUG00000007661)	ENSMPUG00000007691
American mink	MODERN SPECIES	22										SOCS2 (ENSNVIG00000023891) #13	ENSNVIG00000023894 #14	ENSNVIG00000023897	ENSNVIG00000023900 ##15	ENSNVIG00000023902 #16	EEA1 (ENSNVIG00000023904) #19	BTG1 (ENSNVIG00000023913) #22	DCN (ENSNVIG00000023917) #25	LUM (ENSNVIG00000023923) #26	KERA (ENSNVIG00000023924) #27	EPYC (ENSNVIG00000023926) #28	CCER1 (ENSNVIG00000023927) #29	ENSNVIG00000023933	ATP2B1 (ENSNVIG00000000007) #31	POC1B (ENSNVIG00000000231) #32	DUSP6 (ENSNVIG00000000281) #33	ENSNVIG00000000305 #35	TMTC3 (ENSNVIG00000000330) #36	CEP290 (ENSNVIG00000000345) #37	C12orf29 (ENSNVIG00000000481)	C12orf50 (ENSNVIG00000000495)	ENSNVIG00000000519
Ursidae	ANCESTRAL SPECIES	13	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00950000185173	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b.db #16	ENSGT00940000156910 #19	ENSGT00950000182952.C #22	ENSGT00940000158382.d #25	ENSGT00940000158177.b.n #26	ENSGT00940000158968.b #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Ursus	ANCESTRAL SPECIES	120	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00950000185173	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b.db #16	ENSGT00940000156910 #19	ENSGT00950000182952.C #22	ENSGT00940000158382.d #25	ENSGT00940000158177.b.n #26	ENSGT00940000158968.b #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Polar bear	MODERN SPECIES	144	VEZT (ENSUMAG00000003464)	FGD6 (ENSUMAG00000003327)	NR2C1 (ENSUMAG00000003306)	NDUFA12 (ENSUMAG00000003277) #7	ENSUMAG00000003265	TMCC3 (ENSUMAG00000003259) #8	ENSUMAG00000003254	CEP83 (ENSUMAG00000003241) #9	PLXNC1 (ENSUMAG00000003163) #10	CRADD (ENSUMAG00000003126) #12	SOCS2 (ENSUMAG00000003118) #13	MRPL42 (ENSUMAG00000003107) #14	ENSUMAG00000003099 ##15	ENSUMAG00000003093 #16	EEA1 (ENSUMAG00000002622) #19	BTG1 (ENSUMAG00000002516) #22	DCN (ENSUMAG00000002501) #25	LUM (ENSUMAG00000002496) #26	KERA (ENSUMAG00000002489) #27	EPYC (ENSUMAG00000002470) #28	ATP2B1 (ENSUMAG00000002449) #31	POC1B (ENSUMAG00000002434) #32	DUSP6 (ENSUMAG00000002421) #33	KITLG (ENSUMAG00000002410) #35	TMTC3 (ENSUMAG00000002232) #36	CEP290 (ENSUMAG00000001925) #37	C12orf29 (ENSUMAG00000001897)	C12orf50 (ENSUMAG00000001827)	ENSUMAG00000001817	MGAT4C (ENSUMAG00000001797)	NTS (ENSUMAG00000001768)
American black bear	MODERN SPECIES	7575																BTG1 (ENSUAMG00000011500) #22
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	6	METAP2 (ENSAMEG00000002192)	ENSAMEG00000028699	VEZT (ENSAMEG00000002219)	FGD6 (ENSAMEG00000002237)	NR2C1 (ENSAMEG00000002266)	NDUFA12 (ENSAMEG00000026868) #7	TMCC3 (ENSAMEG00000002299) #8	CEP83 (ENSAMEG00000009750) #9	PLXNC1 (ENSAMEG00000009772) #10	ENSAMEG00000009818 #13	MRPL42 (ENSAMEG00000009832) #14	UBE2N (ENSAMEG00000009833) #15	ENSAMEG00000009844 #16	EEA1 (ENSAMEG00000006621) #19	ENSAMEG00000024259	BTG1 (ENSAMEG00000018895) #22	DCN (ENSAMEG00000004377) #25	LUM (ENSAMEG00000014674) #26	KERA (ENSAMEG00000014670) #27	EPYC (ENSAMEG00000014653) #28	ATP2B1 (ENSAMEG00000016182) #31	POC1B (ENSAMEG00000001812) #32	DUSP6 (ENSAMEG00000001852) #33	KITLG (ENSAMEG00000002326) #35	TMTC3 (ENSAMEG00000002347) #36	CEP290 (ENSAMEG00000002356) #37	C12orf29 (ENSAMEG00000002394)	C12orf50 (ENSAMEG00000002419)	MGAT4C (ENSAMEG00000006123)	NTS (ENSAMEG00000006112)	RASSF9 (ENSAMEG00000006110)
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	703																ENSAMEG00000029781 #22
Giant Panda	MODERN SPECIES	671																ENSAMEG00000030857 #22
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00540000070023.d.m.b ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00540000073882	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Chiroptera	ANCESTRAL SPECIES	4							ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Megabat	MODERN SPECIES	7201																BTG1 (ENSPVAG00000005437) #22
Microchiroptera	ANCESTRAL SPECIES	2						ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.a.a ##15	ENSGT00540000070023.d.m.b ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Microbat	MODERN SPECIES	946					ENSMLUG00000000436 ##23	ENSMLUG00000016455	SOCS2 (ENSMLUG00000015422) #13	ENSMLUG00000027351	ENSMLUG00000009982 ##15	ENSMLUG00000002767 #16	ENSMLUG00000022858	EEA1 (ENSMLUG00000003482) #19	ENSMLUG00000001417 #20	ENSMLUG00000023018	ENSMLUG00000026108	BTG1 (ENSMLUG00000017492) #22	ENSMLUG00000028663	ENSMLUG00000027841	DCN (ENSMLUG00000000100) #25	LUM (ENSMLUG00000007704) #26	KERA (ENSMLUG00000007698) #27	EPYC (ENSMLUG00000007680) #28	ATP2B1 (ENSMLUG00000017233) #31	ENSMLUG00000009601	POC1B (ENSMLUG00000002893) #32	DUSP6 (ENSMLUG00000002881) #33	ENSMLUG00000029765	KITLG (ENSMLUG00000001777) #35	ENSMLUG00000003683	TMTC3 (ENSMLUG00000014827) #36	CEP290 (ENSMLUG00000011675) #37
Greater horseshoe bat	MODERN SPECIES	1	RAD51AP1 (ENSRFEG00010019230)	DYRK4 (ENSRFEG00010019022)	AKAP3 (ENSRFEG00010018980)	NDUFA9 (ENSRFEG00010018944)	GALNT8 (ENSRFEG00010018902)	TMCC3 (ENSRFEG00010018851) #8	CEP83 (ENSRFEG00010018746) #9	PLXNC1 (ENSRFEG00010018545) #10	ENSRFEG00010018443 #13	ENSRFEG00010018385 #14	ENSRFEG00010018325 ##15	ENSRFEG00010018237 #16	ENSRFEG00010018024	EEA1 (ENSRFEG00010017989) #19	PLEKHG7 (ENSRFEG00010017717) #20	BTG1 (ENSRFEG00010017678) #22	DCN (ENSRFEG00010017493) #25	LUM (ENSRFEG00010017456) #26	KERA (ENSRFEG00010017413) #27	EPYC (ENSRFEG00010017332) #28	CCER1 (ENSRFEG00010017318) #29	ATP2B1 (ENSRFEG00010017003) #31	POC1B (ENSRFEG00010016669) #32	KITLG (ENSRFEG00010016551) #35	TMTC3 (ENSRFEG00010016505) #36	CEP290 (ENSRFEG00010016392) #37	C12orf29 (ENSRFEG00010016353)	C12orf50 (ENSRFEG00010016011)	MGAT4C (ENSRFEG00010015934)	NTS (ENSRFEG00010015856)	RASSF9 (ENSRFEG00010015800)
Equus	ANCESTRAL SPECIES	21	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275.c #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.a.a ##15	ENSGT00540000070023.d.m.b ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00540000073882	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Donkey	MODERN SPECIES	11	ENSEASG00005019402	ENSEASG00005028645	FGD6 (ENSEASG00005019390)	NR2C1 (ENSEASG00005019381)	NDUFA12 (ENSEASG00005019380) #7	ENSEASG00005006922 #8	ENSEASG00005019376 #9	PLXNC1 (ENSEASG00005019375) #10	SOCS2 (ENSEASG00005019365) #13	MRPL42 (ENSEASG00005019361) #14	ENSEASG00005019358 ##15	ENSEASG00005033697 #16	ENSEASG00005019352	EEA1 (ENSEASG00005019347) #19	PLEKHG7 (ENSEASG00005019344) #20	BTG1 (ENSEASG00005038206) #22	DCN (ENSEASG00005019334) #25	LUM (ENSEASG00005019333) #26	KERA (ENSEASG00005019332) #27	EPYC (ENSEASG00005019329) #28	CCER1 (ENSEASG00005019328) #29	ATP2B1 (ENSEASG00005019323) #31	GALNT4 (ENSEASG00005032213)	POC1B (ENSEASG00005019319) #32	ENSEASG00005029510	DUSP6 (ENSEASG00005019316) #33	ENSEASG00005027464	ENSEASG00005026650 ##15	KITLG (ENSEASG00005019312) #35	TMTC3 (ENSEASG00005019307) #36	CEP290 (ENSEASG00005019245) #37
Horse	MODERN SPECIES	20	VEZT (ENSECAG00000002783)	FGD6 (ENSECAG00000021075)	NR2C1 (ENSECAG00000000645)	NDUFA12 (ENSECAG00000015836) #7	TMCC3 (ENSECAG00000011697) #8	CEP83 (ENSECAG00000008428) #9	PLXNC1 (ENSECAG00000022971) #10	SOCS2 (ENSECAG00000006833) #13	ENSECAG00000053683	MRPL42 (ENSECAG00000026888) #14	ENSECAG00000019597 ##15	NUDT4 (ENSECAG00000019319) #16	PLEKHG7 (ENSECAG00000000374) #20	ENSECAG00000056644	EEA1 (ENSECAG00000007262) #19	BTG1 (ENSECAG00000031980) #22	DCN (ENSECAG00000020413) #25	LUM (ENSECAG00000018248) #26	KERA (ENSECAG00000017668) #27	EPYC (ENSECAG00000015607) #28	CCER1 (ENSECAG00000015541) #29	ENSECAG00000058662	ENSECAG00000045962	ENSECAG00000049161	ATP2B1 (ENSECAG00000008450) #31	POC1B (ENSECAG00000013326)	ENSECAG00000046638	DUSP6 (ENSECAG00000037937) #33	UBE2N (ENSECAG00000009937) ##15	KITLG (ENSECAG00000000152) #35	TMTC3 (ENSECAG00000020616) #36
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Camelidae	ANCESTRAL SPECIES	39	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb.s #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00410000029301 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Alpaca	MODERN SPECIES	2657													EEA1 (ENSVPAG00000011188) #19	ENSVPAG00000011187 #20	ENSVPAG00000011186 #21	BTG1 (ENSVPAG00000011185) #22	DCN (ENSVPAG00000011184) #25	LUM (ENSVPAG00000011183) #26	KERA (ENSVPAG00000011182) #27	EPYC (ENSVPAG00000011181) #28	CCER1 (ENSVPAG00000011180) #29
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	3	ENSCDRG00005020169	FGD6 (ENSCDRG00005020179)	NR2C1 (ENSCDRG00005020214)	ENSCDRG00005020236 #7	TMCC3 (ENSCDRG00005020264) #8	CEP83 (ENSCDRG00005020280) #9	ENSCDRG00005020305	PLXNC1 (ENSCDRG00005020326) #10	CRADD (ENSCDRG00005020435) #12	SOCS2 (ENSCDRG00005020456) #13	ENSCDRG00005020466 #14	UBE2N (ENSCDRG00005020486) #15	ENSCDRG00005020498 #16	ENSCDRG00005020504	EEA1 (ENSCDRG00005020578) #19	ENSCDRG00005021459 #22	DCN (ENSCDRG00005021468) #25	LUM (ENSCDRG00005021485) #26	KERA (ENSCDRG00005021487) #27	EPYC (ENSCDRG00005021491) #28	CCER1 (ENSCDRG00005021493) #29	ATP2B1 (ENSCDRG00005021499) #31	POC1B (ENSCDRG00005021510) #32	DUSP6 (ENSCDRG00005021513) #33	KITLG (ENSCDRG00005021518) #35	TMTC3 (ENSCDRG00005021523) #36	CEP290 (ENSCDRG00005021536) #37	C12orf29 (ENSCDRG00005021555)	C12orf50 (ENSCDRG00005021566)	MGAT4C (ENSCDRG00005005093)	NTS (ENSCDRG00005005109)
Arabian camel	MODERN SPECIES	11	PPP3CA (ENSCDRG00005017194)	ENSCDRG00005017624	EMCN (ENSCDRG00005017637)	DDIT4L (ENSCDRG00005017713)	ENSCDRG00005017732	ENSCDRG00005017764	DNAJB14 (ENSCDRG00005017876)	LAMTOR3 (ENSCDRG00005017934)	DAPP1 (ENSCDRG00005017979)	C4orf54 (ENSCDRG00005018047)	MTTP (ENSCDRG00005018066)	TRMT10A (ENSCDRG00005018130)	C4orf17 (ENSCDRG00005018162)	ENSCDRG00005018187	ENSCDRG00005018280	ENSCDRG00005018374 #22	ADH6 (ENSCDRG00005006293)	ADH4 (ENSCDRG00005006348)	ADH5 (ENSCDRG00005006442)	METAP1 (ENSCDRG00005006507)	ENSCDRG00005006550	TSPAN5 (ENSCDRG00005006719)	RAP1GDS1 (ENSCDRG00005006817)	STPG2 (ENSCDRG00005008261)	ENSCDRG00005008544	PDHA2 (ENSCDRG00005008550)	UNC5C (ENSCDRG00005008588)	ENSCDRG00005008779	BMPR1B (ENSCDRG00005008805)	PDLIM5 (ENSCDRG00005008970)	HPGDS (ENSCDRG00005009472)
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000155016.w.a	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Yarkand deer	MODERN SPECIES	22	VEZT (ENSCHYG00000001339)	FGD6 (ENSCHYG00000001259)	NR2C1 (ENSCHYG00000001219)	NDUFA12 (ENSCHYG00000001181) #7	TMCC3 (ENSCHYG00000001134) #8	CEP83 (ENSCHYG00000001094) #9	PLXNC1 (ENSCHYG00000000862) #10	CRADD (ENSCHYG00000000817) #12	ENSCHYG00000000799 #13	ENSCHYG00000000783	ENSCHYG00000000768 #14	UBE2N (ENSCHYG00000000745) #15	ENSCHYG00000000720 #16	EEA1 (ENSCHYG00000000516) #19	PLEKHG7 (ENSCHYG00000000447) #20	BTG1 (ENSCHYG00000000427) #22	DCN (ENSCHYG00000000364) #25	LUM (ENSCHYG00000000293) #26	KERA (ENSCHYG00000000274) #27	EPYC (ENSCHYG00000000260) #28	CCER1 (ENSCHYG00000000252) #29	ATP2B1 (ENSCHYG00000000182) #31	POC1B (ENSCHYG00000000134) #32	DUSP6 (ENSCHYG00000000104) #33	ENSCHYG00000000077	KITLG (ENSCHYG00000000054) #35	TMTC3 (ENSCHYG00000023107) #36	CEP290 (ENSCHYG00000022974) #37	C12orf29 (ENSCHYG00000022924)	C12orf50 (ENSCHYG00000022875)	MGAT4C (ENSCHYG00000022826)
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000155016.w.a	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000155016.w.a	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00950000182878.b.b.k.b	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Caprinae	ANCESTRAL SPECIES		ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00940000153305.c.e.a	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00950000182878.b.b.k.b	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Rambouillet Sheep	MODERN SPECIES	19	VEZT (ENSOARG00020014442)	FGD6 (ENSOARG00020014249)	NR2C1 (ENSOARG00020014046)	NDUFA12 (ENSOARG00020013894) #7	TMCC3 (ENSOARG00020013827) #8	CEP83 (ENSOARG00020013661) #9	PLXNC1 (ENSOARG00020012556) #10	ENSOARG00020012474	CRADD (ENSOARG00020012437) #12	SOCS2 (ENSOARG00020012403) #13	MRPL42 (ENSOARG00020012331) #14	UBE2N (ENSOARG00020012230) #15	ENSOARG00020012168 #16	EEA1 (ENSOARG00020010609) #19	PLEKHG7 (ENSOARG00020010208) #20	BTG1 (ENSOARG00020010138) #22	ENSOARG00020010084	DCN (ENSOARG00020009720) #25	LUM (ENSOARG00020009658) #26	KERA (ENSOARG00020009608) #27	EPYC (ENSOARG00020009542) #28	CCER1 (ENSOARG00020009520) #29	ENSOARG00020009475	ATP2B1 (ENSOARG00020008845) #31	POC1B (ENSOARG00020008549) #32	DUSP6 (ENSOARG00020008467) #33	ENSOARG00020008432	KITLG (ENSOARG00020008140) #35	TMTC3 (ENSOARG00020008061) #36	ENSOARG00020008023 #37	C3H12orf29 (ENSOARG00020007796)
Goat	MODERN SPECIES	24	FGD6 (ENSCHIG00000020399)	NR2C1 (ENSCHIG00000014160)	NDUFA12 (ENSCHIG00000018443) #7	TMCC3 (ENSCHIG00000020232) #8	CEP83 (ENSCHIG00000013917) #9	PLXNC1 (ENSCHIG00000011272) #10	ENSCHIG00000001717	CRADD (ENSCHIG00000023376) #12	SOCS2 (ENSCHIG00000027066) #13	MRPL42 (ENSCHIG00000014921) #14	ENSCHIG00000021426	ENSCHIG00000025703 ##15	ENSCHIG00000022798 #16	EEA1 (ENSCHIG00000021418) #19	PLEKHG7 (ENSCHIG00000026476) #20	BTG1 (ENSCHIG00000012095) #22	DCN (ENSCHIG00000018030) #25	LUM (ENSCHIG00000023831) #26	KERA (ENSCHIG00000003728) #27	EPYC (ENSCHIG00000000730) #28	CCER1 (ENSCHIG00000003024) #29	ATP2B1 (ENSCHIG00000024254) #31	POC1B (ENSCHIG00000026402) #32	DUSP6 (ENSCHIG00000011320) #33	KITLG (ENSCHIG00000025211) #35	TMTC3 (ENSCHIG00000007192) #36	CEP290 (ENSCHIG00000010170) #37	C12orf29 (ENSCHIG00000011970)	C12orf50 (ENSCHIG00000016372)	MGAT4C (ENSCHIG00000026547)	NTS (ENSCHIG00000015085)
Bovinae	ANCESTRAL SPECIES	17	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.h #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.b.b.a.a	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00950000182878.b.b.k.b	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Bos	ANCESTRAL SPECIES	2	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.h.b #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000153305.d.ab.b.a.a	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b.z.a #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.b.b.a.a.a	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00950000182878.b.b.k.b	ENSGT00390000018272.c #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000158165	ENSGT00390000005848.h.a.a #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000153305.d.ab.b.a.a	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b.z.a #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.b.b.a.a.a	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272.c #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Hybrid Bos Indicus	MODERN SPECIES	24	CRADD (ENSBIXG00005011535) #12	ENSBIXG00005011494	SOCS2 (ENSBIXG00005011463) #13	MRPL42 (ENSBIXG00005001077) #14	UBE2N (ENSBIXG00005001062) #15	ENSBIXG00005011234	ENSBIXG00005001049 #16	ENSBIXG00005011214	ENSBIXG00005011210	ENSBIXG00005011205	ENSBIXG00005011197	ENSBIXG00005011181	EEA1 (ENSBIXG00005001022) #19	PLEKHG7 (ENSBIXG00005000562) #20	ENSBIXG00005010925	ENSBIXG00005000962 #22	DCN (ENSBIXG00005010822) #25	LUM (ENSBIXG00005000930) #26	KERA (ENSBIXG00005010696) #27	EPYC (ENSBIXG00005000920) #28	CCER1 (ENSBIXG00005010660) #29	ATP2B1 (ENSBIXG00005000696) #31	POC1B (ENSBIXG00005010375) #32	DUSP6 (ENSBIXG00005010324) #33	ENSBIXG00005010310	KITLG (ENSBIXG00005010279) #35	TMTC3 (ENSBIXG00005000813) #36	CEP290 (ENSBIXG00005010227) #37	C12orf29 (ENSBIXG00005010182)	C12orf50 (ENSBIXG00005006418)	ENSBIXG00005000773
Cow	MODERN SPECIES	24	NR2C1 (ENSBTAG00000017729)	NDUFA12 (ENSBTAG00000014669) #7	TMCC3 (ENSBTAG00000014375) #8	CEP83 (ENSBTAG00000004484) #9	ENSBTAG00000052916	PLXNC1 (ENSBTAG00000011245) #10	ENSBTAG00000053589	CRADD (ENSBTAG00000051267) #12	SOCS2 (ENSBTAG00000012007) #13	MRPL42 (ENSBTAG00000002708) #14	UBE2N (ENSBTAG00000021767) ##15	NUDT4 (ENSBTAG00000007447) #16	EEA1 (ENSBTAG00000000421) #19	PLEKHG7 (ENSBTAG00000000818) #20	ENSBTAG00000033600	BTG1 (ENSBTAG00000020330) #22	DCN (ENSBTAG00000003505) #25	LUM (ENSBTAG00000001745) #26	KERA (ENSBTAG00000014340) #27	EPYC (ENSBTAG00000007990) #28	CCER1 (ENSBTAG00000007035) #29	ATP2B1 (ENSBTAG00000009552) #31	POC1B (ENSBTAG00000000687) #32	DUSP6 (ENSBTAG00000004587) #33	KITLG (ENSBTAG00000017549) #35	TMTC3 (ENSBTAG00000009023) #36	ENSBTAG00000051348 #37	ENSBTAG00000052837	CEP290 (ENSBTAG00000018745) #37	C5H12orf29 (ENSBTAG00000018743)	C5H12orf50 (ENSBTAG00000018180)
Bos_a	ANCESTRAL SPECIES	3	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.h.b #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000153305.d.ab.b.a.a	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b.z.a #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00950000182878.b.b.k.b	ENSGT00390000018272.c #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Domestic yak	MODERN SPECIES	24	FGD6 (ENSBGRG00000000973)	NR2C1 (ENSBGRG00000001106)	NDUFA12 (ENSBGRG00000001191) #7	TMCC3 (ENSBGRG00000001238) #8	CEP83 (ENSBGRG00000001277) #9	PLXNC1 (ENSBGRG00000001355) #10	ENSBGRG00000001744 #12	SOCS2 (ENSBGRG00000001760) #13	MRPL42 (ENSBGRG00000001775) #14	ENSBGRG00000001804	UBE2N (ENSBGRG00000001816) #15	ENSBGRG00000001842 #16	ENSBGRG00000001871	EEA1 (ENSBGRG00000001904) #19	PLEKHG7 (ENSBGRG00000002088) #20	ENSBGRG00000002139 #22	ENSBGRG00000002152	DCN (ENSBGRG00000002168) #25	LUM (ENSBGRG00000002309) #26	KERA (ENSBGRG00000002328) #27	EPYC (ENSBGRG00000002339) #28	CCER1 (ENSBGRG00000002370) #29	ATP2B1 (ENSBGRG00000002414) #31	POC1B (ENSBGRG00000002622) #32	GALNT4 (ENSBGRG00000002682)	DUSP6 (ENSBGRG00000002711) #33	ENSBGRG00000002741	KITLG (ENSBGRG00000002777) #35	TMTC3 (ENSBGRG00000002830) #36	CEP290 (ENSBGRG00000002844) #37	ENSBGRG00000002890
Wild yak	MODERN SPECIES	2801																BTG1 (ENSBMUG00000022564) #22
American bison	MODERN SPECIES	3057						CEP83 (ENSBBBG00000005097) #9	PLXNC1 (ENSBBBG00000020000) #10	ENSBBBG00000019943 #12	SOCS2 (ENSBBBG00000019936) #13	ENSBBBG00000019921 #14	ENSBBBG00000019905 ##15	ENSBBBG00000019880 #16	EEA1 (ENSBBBG00000019856) #19	ENSBBBG00000019819 #20	ENSBBBG00000019784	BTG1 (ENSBBBG00000007234) #22
Siberian musk deer	MODERN SPECIES	149															ENSMMSG00000013084	BTG1 (ENSMMSG00000013074) #22	DCN (ENSMMSG00000012969) #25	LUM (ENSMMSG00000012950) #26	KERA (ENSMMSG00000012932) #27	EPYC (ENSMMSG00000012903) #28	CCER1 (ENSMMSG00000012892) #29
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.j.a #7	ENSGT00510000047418.m.b	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.a.a ##15	ENSGT00940000155210.a.b.u #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Blue whale	MODERN SPECIES	1	VEZT (ENSBMSG00010009384)	FGD6 (ENSBMSG00010009375)	NR2C1 (ENSBMSG00010009358)	ENSBMSG00010009348 #7	ENSBMSG00010009334	TMCC3 (ENSBMSG00010009320) #8	CEP83 (ENSBMSG00010009304) #9	PLXNC1 (ENSBMSG00010009279) #10	ENSBMSG00010009257 #12	SOCS2 (ENSBMSG00010009251) #13	MRPL42 (ENSBMSG00010009238) #14	ENSBMSG00010009224 ##15	ENSBMSG00010009214 #16	EEA1 (ENSBMSG00010009204) #19	PLEKHG7 (ENSBMSG00010009181) #20	ENSBMSG00010009169 #22	ENSBMSG00010009163	DCN (ENSBMSG00010009144) #25	LUM (ENSBMSG00010009137) #26	KERA (ENSBMSG00010009128) #27	EPYC (ENSBMSG00010009120) #28	CCER1 (ENSBMSG00010009109) #29	ATP2B1 (ENSBMSG00010009037) #31	POC1B (ENSBMSG00010009000) #32	DUSP6 (ENSBMSG00010008987) #33	ENSBMSG00010008979	ENSBMSG00010008968	KITLG (ENSBMSG00010008954) #35	TMTC3 (ENSBMSG00010008926) #36	ENSBMSG00010008884 #37	C12orf29 (ENSBMSG00010008863)
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.j.a #7	ENSGT00510000047418.m.b	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.a.a ##15	ENSGT00940000155210.a.b.u #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.j.a #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.a.a ##15	ENSGT00940000155210.a.b.u #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Dolphin	MODERN SPECIES	6746																BTG1 (ENSTTRG00000014118) #22
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.j.a #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b.u #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Vaquita	MODERN SPECIES	1	VEZT (ENSPSNG00000013799)	FGD6 (ENSPSNG00000014016)	NR2C1 (ENSPSNG00000014173)	ENSPSNG00000014297 #7	ENSPSNG00000014399	TMCC3 (ENSPSNG00000014446) #8	CEP83 (ENSPSNG00000014569) #9	PLXNC1 (ENSPSNG00000014704) #10	CRADD (ENSPSNG00000015305) #12	SOCS2 (ENSPSNG00000015360) #13	MRPL42 (ENSPSNG00000015405) #14	UBE2N (ENSPSNG00000015507) #15	ENSPSNG00000015623 #16	EEA1 (ENSPSNG00000015763) #19	ENSPSNG00000015919 #20	BTG1 (ENSPSNG00000004224) #22	DCN (ENSPSNG00000004313) #25	LUM (ENSPSNG00000004371) #26	KERA (ENSPSNG00000004384) #27	EPYC (ENSPSNG00000004398) #28	CCER1 (ENSPSNG00000004420) #29	ATP2B1 (ENSPSNG00000004461) #31	POC1B (ENSPSNG00000004557) #32	DUSP6 (ENSPSNG00000004604) #33	KITLG (ENSPSNG00000004647) #35	TMTC3 (ENSPSNG00000004690) #36	CEP290 (ENSPSNG00000004767) #37	C12orf29 (ENSPSNG00000004829)	C12orf50 (ENSPSNG00000004876)	MGAT4C (ENSPSNG00000004935)	NTS (ENSPSNG00000004962)
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.j.a #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb.kb.b #14	ENSGT00540000070023.c.a.a ##15	ENSGT00940000155210.a.b.u #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000012138.a.b.t.bb.a.a.d	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Beluga whale	MODERN SPECIES	38								ENSDLEG00000004792 #12	SOCS2 (ENSDLEG00000004798) #13	ENSDLEG00000004812 #14	ENSDLEG00000004828 ##15	NUDT4 (ENSDLEG00000004835) #16	EEA1 (ENSDLEG00000004852) #19	ENSDLEG00000004902 #20	ENSDLEG00000004917	BTG1 (ENSDLEG00000004924) #22	DCN (ENSDLEG00000004937) #25	LUM (ENSDLEG00000004945) #26	KERA (ENSDLEG00000004953) #27	EPYC (ENSDLEG00000004960) #28	CCER1 (ENSDLEG00000004965) #29	ATP2B1 (ENSDLEG00000004979) #31	POC1B (ENSDLEG00000005012) #32	DUSP6 (ENSDLEG00000005047) #33	ENSDLEG00000005056	KITLG (ENSDLEG00000005063) #35	TMTC3 (ENSDLEG00000005092) #36	CEP290 (ENSDLEG00000005127) #37	CUNH12orf29 (ENSDLEG00000005151)	C12orf50 (ENSDLEG00000005169)	MGAT4C (ENSDLEG00000005205)
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	307	BMPR1B (ENSMMNG00015011501)	PDLIM5 (ENSMMNG00015011438)	ENSMMNG00015011412	HPGDS (ENSMMNG00015011400)	SMARCAD1 (ENSMMNG00015011369)	ATOH1 (ENSMMNG00015011356)	ENSMMNG00015011351	GRID2 (ENSMMNG00015011268)	CCSER1 (ENSMMNG00015011215)	ENSMMNG00015011167	MMRN1 (ENSMMNG00015011136)	SNCA (ENSMMNG00015011091)	ENSMMNG00015011065	GPRIN3 (ENSMMNG00015011061)	TIGD2 (ENSMMNG00015011054)	ENSMMNG00015011038 #22	FAM13A (ENSMMNG00015010904)	NAP1L5 (ENSMMNG00015010819)	HERC3 (ENSMMNG00015010732)	ENSMMNG00015010704	HERC5 (ENSMMNG00015010595)	PPM1K (ENSMMNG00015010529)	ENSMMNG00015010427	PKD2 (ENSMMNG00015010375)	SPP1 (ENSMMNG00015010339)	MEPE (ENSMMNG00015010312)	IBSP (ENSMMNG00015010295)	DMP1 (ENSMMNG00015010277)	ENSMMNG00015010260	SPARCL1 (ENSMMNG00015010232)	NUDT9 (ENSMMNG00015010205)
Narwhal	MODERN SPECIES	313	VEZT (ENSMMNG00015021810)	FGD6 (ENSMMNG00015021789)	NR2C1 (ENSMMNG00015021774)	ENSMMNG00015021766 #7	TMCC3 (ENSMMNG00015021750) #8	ENSMMNG00015021743	CEP83 (ENSMMNG00015021737) #9	PLXNC1 (ENSMMNG00015021714) #10	CRADD (ENSMMNG00015021699) #12	SOCS2 (ENSMMNG00015021693) #13	ENSMMNG00015021684 #14	ENSMMNG00015021674 ##15	ENSMMNG00015021656 #16	EEA1 (ENSMMNG00015021607) #19	ENSMMNG00015021573 #20	ENSMMNG00015021548 #22	ENSMMNG00015021543	DCN (ENSMMNG00015021512) #25	LUM (ENSMMNG00015021485) #26	KERA (ENSMMNG00015021476) #27	EPYC (ENSMMNG00015021465) #28	CCER1 (ENSMMNG00015021459) #29	ATP2B1 (ENSMMNG00015021401) #31	POC1B (ENSMMNG00015021321) #32	DUSP6 (ENSMMNG00015021301) #33	ENSMMNG00015021288	KITLG (ENSMMNG00015021271) #35	TMTC3 (ENSMMNG00015021249) #36	CEP290 (ENSMMNG00015021183) #37	C12orf29 (ENSMMNG00015021146)	C12orf50 (ENSMMNG00015021109)
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	18	BMPR1B (ENSPCTG00005003397)	PDLIM5 (ENSPCTG00005003263)	HPGDS (ENSPCTG00005003222)	SMARCAD1 (ENSPCTG00005003209)	ATOH1 (ENSPCTG00005003202)	GRID2 (ENSPCTG00005003159)	ENSPCTG00005003125	ENSPCTG00005003117	CCSER1 (ENSPCTG00005003085)	ENSPCTG00005003070	MMRN1 (ENSPCTG00005003048)	SNCA (ENSPCTG00005002998)	ENSPCTG00005002973	GPRIN3 (ENSPCTG00005002964)	TIGD2 (ENSPCTG00005002958)	ENSPCTG00005002946 #22	FAM13A (ENSPCTG00005002764)	NAP1L5 (ENSPCTG00005002699)	HERC3 (ENSPCTG00005002665)	PYURF (ENSPCTG00005002646)	PIGY (ENSPCTG00005002636)	HERC5 (ENSPCTG00005002573)	PPM1K (ENSPCTG00005002532)	ABCG2 (ENSPCTG00005002498)	ENSPCTG00005002475	PKD2 (ENSPCTG00005002432)	SPP1 (ENSPCTG00005002383)	MEPE (ENSPCTG00005002360)	IBSP (ENSPCTG00005002349)	DMP1 (ENSPCTG00005002286)	ENSPCTG00005002264
Sperm whale	MODERN SPECIES	17	FGD6 (ENSPCTG00005005127)	NR2C1 (ENSPCTG00005005039)	NDUFA12 (ENSPCTG00005005007) #7	ENSPCTG00005004984	TMCC3 (ENSPCTG00005004963) #8	CEP83 (ENSPCTG00005022031) #9	PLXNC1 (ENSPCTG00005022010) #10	MRPL42 (ENSPCTG00005021997) #14	SOCS2 (ENSPCTG00005021994) #13	CRADD (ENSPCTG00005021988) #12	ENSPCTG00005021985	ENSPCTG00005021981 ##15	NUDT4 (ENSPCTG00005021978) #16	EEA1 (ENSPCTG00005021847) #19	ENSPCTG00005021770 #20	BTG1 (ENSPCTG00005021739) #22	ENSPCTG00005021713	DCN (ENSPCTG00005021653) #25	LUM (ENSPCTG00005021643) #26	KERA (ENSPCTG00005021629) #27	EPYC (ENSPCTG00005021606) #28	ATP2B1 (ENSPCTG00005021464) #31	POC1B (ENSPCTG00005021406) #32	DUSP6 (ENSPCTG00005021369) #33	ENSPCTG00005021346	KITLG (ENSPCTG00005021308) #35	TMTC3 (ENSPCTG00005021241) #36	CEP290 (ENSPCTG00005020898) #37	C6H12orf29 (ENSPCTG00005020851)	C12orf50 (ENSPCTG00005020740)	MGAT4C (ENSPCTG00005020711)
Suina	ANCESTRAL SPECIES	4	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491.lb #14	ENSGT00540000070023.c.b.b #15	ENSGT00540000070023.c.a.a ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Chacoan peccary	MODERN SPECIES	873	METAP2 (ENSCWAG00000016713)	ENSCWAG00000016653	VEZT (ENSCWAG00000016620)	FGD6 (ENSCWAG00000016343)	NR2C1 (ENSCWAG00000016281)	ENSCWAG00000016201 #7	TMCC3 (ENSCWAG00000016118) #8	CEP83 (ENSCWAG00000016082) #9	PLXNC1 (ENSCWAG00000015821) #10	CRADD (ENSCWAG00000015724) #12	SOCS2 (ENSCWAG00000015795) #13	ENSCWAG00000015684 #14	UBE2N (ENSCWAG00000015634) #15	ENSCWAG00000015563 #16	EEA1 (ENSCWAG00000015529) #19	BTG1 (ENSCWAG00000015489) #22	DCN (ENSCWAG00000015305) #25	LUM (ENSCWAG00000015263) #26	KERA (ENSCWAG00000015238) #27	EPYC (ENSCWAG00000015189) #28	CCER1 (ENSCWAG00000015173) #29	ATP2B1 (ENSCWAG00000015008) #31	POC1B (ENSCWAG00000014907) #32	DUSP6 (ENSCWAG00000014861) #33	KITLG (ENSCWAG00000014774) #35	TMTC3 (ENSCWAG00000014704) #36	CEP290 (ENSCWAG00000014556) #37	C12orf29 (ENSCWAG00000014480)	C12orf50 (ENSCWAG00000014275)
Pig	MODERN SPECIES	13	FGD6 (ENSSSCG00000000901)	NR2C1 (ENSSSCG00000000902)	ENSSSCG00000000905 #7	TMCC3 (ENSSSCG00000000906) #8	CEP83 (ENSSSCG00000024563) #9	PLXNC1 (ENSSSCG00000000907) #10	ENSSSCG00000048542	CRADD (ENSSSCG00000000910) #12	SOCS2 (ENSSSCG00000053891) #13	ENSSSCG00000030478 #14	ENSSSCG00000059484	ENSSSCG00000000908 ##15	ENSSSCG00000040056 #16	EEA1 (ENSSSCG00000044340) #19	ENSSSCG00000050856	BTG1 (ENSSSCG00000035790) #22	ENSSSCG00000051747	ENSSSCG00000055305	ENSSSCG00000061113	DCN (ENSSSCG00000000915) #25	LUM (ENSSSCG00000000916) #26	KERA (ENSSSCG00000000917) #27	EPYC (ENSSSCG00000000918) #28	CCER1 (ENSSSCG00000039400) #29	ENSSSCG00000049831	ENSSSCG00000062710	ATP2B1 (ENSSSCG00000027898) #31	ENSSSCG00000042626	POC1B (ENSSSCG00000000920) #32	GALNT4 (ENSSSCG00000043102)	DUSP6 (ENSSSCG00000037910) #33
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.a.a ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Xenarthra	ANCESTRAL SPECIES	227														ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
Armadillo	MODERN SPECIES	1674													ENSDNOG00000041750	EEA1 (ENSDNOG00000001760) #19	PLEKHG7 (ENSDNOG00000036407) #20	BTG1 (ENSDNOG00000002220) #22	DCN (ENSDNOG00000038481) #25	LUM (ENSDNOG00000044154) #26	KERA (ENSDNOG00000014143) #27	EPYC (ENSDNOG00000007775) #28	CCER1 (ENSDNOG00000045768) #29	ENSDNOG00000042809	ENSDNOG00000032221	ATP2B1 (ENSDNOG00000014419) #31	POC1B (ENSDNOG00000011916) #32	DUSP6 (ENSDNOG00000011901) #33	KITLG (ENSDNOG00000036474) #35	TMTC3 (ENSDNOG00000041271) #36	ENSDNOG00000047073 #37	ENSDNOG00000030785 #37	C12orf29 (ENSDNOG00000004346)
Sloth	MODERN SPECIES	11077																BTG1 (ENSCHOG00000004246) #22
Afrotheria	ANCESTRAL SPECIES	8	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.a.a ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Afrotheria_a	ANCESTRAL SPECIES	8	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.a.a ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Elephant	MODERN SPECIES	196	VEZT (ENSLAFG00000005868)	FGD6 (ENSLAFG00000005863)	NR2C1 (ENSLAFG00000005858)	NDUFA12 (ENSLAFG00000030887) #7	TMCC3 (ENSLAFG00000011565) #8	CEP83 (ENSLAFG00000017800) #9	PLXNC1 (ENSLAFG00000017782) #10	CRADD (ENSLAFG00000017380) #12	SOCS2 (ENSLAFG00000009745) #13	MRPL42 (ENSLAFG00000013779) #14	ENSLAFG00000028985 ##15	ENSLAFG00000013776 #16	EEA1 (ENSLAFG00000001211) #19	ENSLAFG00000001209 #20	ENSLAFG00000020811	BTG1 (ENSLAFG00000006031) #22	ENSLAFG00000030088	DCN (ENSLAFG00000006742) #25	LUM (ENSLAFG00000006738) #26	KERA (ENSLAFG00000031966) #27	EPYC (ENSLAFG00000018235) #28	CCER1 (ENSLAFG00000010521) #29	ATP2B1 (ENSLAFG00000015217) #31	POC1B (ENSLAFG00000017550) #32	DUSP6 (ENSLAFG00000018327) #33	KITLG (ENSLAFG00000006294) #35	TMTC3 (ENSLAFG00000015104) #36	CEP290 (ENSLAFG00000013292) #37	C12orf29 (ENSLAFG00000013286)	C12orf50 (ENSLAFG00000005231)	MGAT4C (ENSLAFG00000007280)
Hyrax	MODERN SPECIES	10424																BTG1 (ENSPCAG00000010429) #22
Tenrec	MODERN SPECIES	17401																BTG1 (ENSETEG00000003130) #22
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Opossum	MODERN SPECIES	7	VEZT (ENSMODG00000008194)	FGD6 (ENSMODG00000008231)	ENSMODG00000025050	NR2C1 (ENSMODG00000008267)	TMCC3 (ENSMODG00000008293) #8	CEP83 (ENSMODG00000009361) #9	PLXNC1 (ENSMODG00000009408) #10	ENSMODG00000046679	ENSMODG00000027316	SOCS2 (ENSMODG00000009444) #13	ENSMODG00000046598 #14	UBE2N (ENSMODG00000009451) #15	ENSMODG00000009468 #16	EEA1 (ENSMODG00000009488) #19	PLEKHG7 (ENSMODG00000009492) #20	BTG1 (ENSMODG00000009503) #22	ENSMODG00000009509	DCN (ENSMODG00000009654) #25	LUM (ENSMODG00000009667) #26	KERA (ENSMODG00000009669) #27	EPYC (ENSMODG00000009682) #28	ENSMODG00000041109 #29	ENSMODG00000025060	ENSMODG00000028879	ATP2B1 (ENSMODG00000009874) #31	POC1B (ENSMODG00000009882) #32	ENSMODG00000009687	DDX17 (ENSMODG00000009681)	DMC1 (ENSMODG00000009655)	ENSMODG00000009641	CBY1 (ENSMODG00000009638)
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448.c #12	ENSGT00940000170788	ENSGT00390000014448.d #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382.b #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000022810	ENSSHAG00000028268	ENSSHAG00000013440 #7	TMCC3 (ENSSHAG00000011196) #8	CEP83 (ENSSHAG00000010076) #9	PLXNC1 (ENSSHAG00000009385) #10	ENSSHAG00000031974	ENSSHAG00000006278 #12	SOCS2 (ENSSHAG00000021457) #13	MRPL42 (ENSSHAG00000021616) #14	UBE2N (ENSSHAG00000021381) #15	ENSSHAG00000029390 #16	ENSSHAG00000027144	EEA1 (ENSSHAG00000015853) #19	PLEKHG7 (ENSSHAG00000015586) #20	ENSSHAG00000024039 #22	ENSSHAG00000021233 #25	ENSSHAG00000006180 #25	LUM (ENSSHAG00000005444) #26	KERA (ENSSHAG00000004631) #27	EPYC (ENSSHAG00000002667) #28	ENSSHAG00000026485 #29	ENSSHAG00000022396	ATP2B1 (ENSSHAG00000008050) #31	POC1B (ENSSHAG00000022843) #32	ENSSHAG00000004137 #33	ENSSHAG00000031842 #35	ENSSHAG00000002521	ENSSHAG00000006054	ENSSHAG00000027542	ENSSHAG00000001856
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448.c #12	ENSGT00940000170788	ENSGT00390000014448.d #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382.b #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448.c #12	ENSGT00940000170788	ENSGT00390000014448.d #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382.b #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00730000111529 #29	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
koala	MODERN SPECIES	115	VEZT (ENSPCIG00000036475)	ENSPCIG00000011367	NDUFA12 (ENSPCIG00000011363) #7	TMCC3 (ENSPCIG00000030977) #8	CEP83 (ENSPCIG00000005919) #9	PLXNC1 (ENSPCIG00000005924) #10	ENSPCIG00000035562 #12	ENSPCIG00000001373 #12	SOCS2 (ENSPCIG00000001405) #13	ENSPCIG00000001472 #14	UBE2N (ENSPCIG00000001489) ##15	ENSPCIG00000001505 #16	ENSPCIG00000034890	ENSPCIG00000034635 #19	PLEKHG7 (ENSPCIG00000001619) #20	BTG1 (ENSPCIG00000031006) #22	DCN (ENSPCIG00000026071) #25	LUM (ENSPCIG00000026073) #26	KERA (ENSPCIG00000026566) #27	EPYC (ENSPCIG00000008580) #28
Common wonbat	MODERN SPECIES	1095								ENSVURG00010015256	ENSVURG00010015261 #12	SOCS2 (ENSVURG00010015269) #13	MRPL42 (ENSVURG00010015281) #14	UBE2N (ENSVURG00010015291) #15	ENSVURG00010015301 #16	EEA1 (ENSVURG00010015326) #19	ENSVURG00010015374 #20	BTG1 (ENSVURG00010015385) #22	DCN (ENSVURG00010015394) #25	LUM (ENSVURG00010015406) #26	KERA (ENSVURG00010015412) #27	EPYC (ENSVURG00010015421) #28	ENSVURG00010015430 #29	ENSVURG00010015437	ATP2B1 (ENSVURG00010015461) #31	POC1B (ENSVURG00010015496) #32	GALNT4 (ENSVURG00010015516)	DUSP6 (ENSVURG00010015543) #33	KITLG (ENSVURG00010015559) #35	TMTC3 (ENSVURG00010015606) #36	CEP290 (ENSVURG00010015792) #37	C12orf29 (ENSVURG00010015845)	C12orf50 (ENSVURG00010015858)
Wallaby	MODERN SPECIES	10645																BTG1 (ENSMEUG00000001126) #22
Platypus	MODERN SPECIES	5	METAP2 (ENSOANG00000003239)	VEZT (ENSOANG00000006615)	FGD6 (ENSOANG00000006616)	NR2C1 (ENSOANG00000006617)	ENSOANG00000006618 #7	TMCC3 (ENSOANG00000006619) #8	CEP83 (ENSOANG00000006620) #9	PLXNC1 (ENSOANG00000006622) #10	CRADD (ENSOANG00000044141) #12	SOCS2 (ENSOANG00000038572) #13	ENSOANG00000019984	ENSOANG00000046598 ##15	NUDT4 (ENSOANG00000045844) #16	EEA1 (ENSOANG00000006628) #19	ENSOANG00000006629 #20	BTG1 (ENSOANG00000037580) #22	DCN (ENSOANG00000006630) #25	LUM (ENSOANG00000006631) #26	KERA (ENSOANG00000006632) #27	EPYC (ENSOANG00000006633) #28	ATP2B1 (ENSOANG00000006634) #31	POC1B (ENSOANG00000006637) #32	DUSP6 (ENSOANG00000050335) #33	KITLG (ENSOANG00000044805) #35	TMTC3 (ENSOANG00000006640) #36	CEP290 (ENSOANG00000006641) #37	C12orf50 (ENSOANG00000006643)	C12orf29 (ENSOANG00000006642)	MGAT4C (ENSOANG00000006644)	NTS (ENSOANG00000006645)	RASSF9 (ENSOANG00000006646)
Sauria	ANCESTRAL SPECIES	4	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00940000166455	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.d ##15	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000163607	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Chinese turtle	MODERN SPECIES	1696													EEA1 (ENSPSIG00000018167) #19	ENSPSIG00000003380	PLEKHG7 (ENSPSIG00000003400) #20	BTG1 (ENSPSIG00000003422) #22	DCN (ENSPSIG00000003492) #25	LUM (ENSPSIG00000003594) #26	KERA (ENSPSIG00000003599) #27	EPYC (ENSPSIG00000003603) #28	ENSPSIG00000001129
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES		FGD6 (ENSGEVG00005001766)	NR2C1 (ENSGEVG00005001823)	NDUFA12 (ENSGEVG00005001858) #7	TMCC3 (ENSGEVG00005001866) #8	CEP83 (ENSGEVG00005001881) #9	PLXNC1 (ENSGEVG00005002052) #10	SOCS2 (ENSGEVG00005002359) #13	MRPL42 (ENSGEVG00005002373) #14	ENSGEVG00005002390	UBE2N (ENSGEVG00005002404) #15	ENSGEVG00005002414 #16	ENSGEVG00005002425	EEA1 (ENSGEVG00005003031) #19	PLEKHG7 (ENSGEVG00005004342) #20	ENSGEVG00005004381	BTG1 (ENSGEVG00005004396) #22	DCN (ENSGEVG00005004415) #25	LUM (ENSGEVG00005004437) #26	KERA (ENSGEVG00005004448) #27	EPYC (ENSGEVG00005004478) #28	ATP2B1 (ENSGEVG00005004534) #31	POC1B (ENSGEVG00005004596) #32	DUSP6 (ENSGEVG00005004648) #33	KITLG (ENSGEVG00005004680) #35	TMTC3 (ENSGEVG00005004757) #36	CEP290 (ENSGEVG00005005168) #37	C12orf29 (ENSGEVG00005006504)	C12orf50 (ENSGEVG00005006563)	MGAT4C (ENSGEVG00005006595)	NTS (ENSGEVG00005006613)	RASSF9 (ENSGEVG00005006645)
Goode s thornscrub tortoise	MODERN SPECIES	21	GLT8D1 (ENSGEVG00005012743)	ENSGEVG00005012769	NEK4 (ENSGEVG00005012801)	ENSGEVG00005012857	ITIH4 (ENSGEVG00005013213)	ENSGEVG00005013352	ENSGEVG00005013429	MUSTN1 (ENSGEVG00005013513)	STIMATE (ENSGEVG00005013536)	SFMBT1 (ENSGEVG00005013605)	RFT1 (ENSGEVG00005013982)	PRKCD (ENSGEVG00005014108)	PFKFB4 (ENSGEVG00005014155)	SHISA5 (ENSGEVG00005014209)	ATRIP (ENSGEVG00005014240)	ENSGEVG00005014511 #22	IPPK (ENSGEVG00005014538)	ENSGEVG00005014568	ECM2 (ENSGEVG00005014620)	ASPN (ENSGEVG00005014816)	OMD (ENSGEVG00005015011)	OGN (ENSGEVG00005015045)	CENPP (ENSGEVG00005015104)	ENSGEVG00005015160	ENSGEVG00005015198	IARS1 (ENSGEVG00005015240)	ATP2B2 (ENSGEVG00005015471)	SLC6A11 (ENSGEVG00005017116)	SLC6A1 (ENSGEVG00005017316)	HRH1 (ENSGEVG00005017663)	ATG7 (ENSGEVG00005017701)
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	202														EEA1 (ENSCABG00000022097) #19	PLEKHG7 (ENSCABG00000022091) #20	BTG1 (ENSCABG00000022090) #22	DCN (ENSCABG00000022089) #25	LUM (ENSCABG00000022088) #26	KERA (ENSCABG00000022087) #27	EPYC (ENSCABG00000022086) #28
Abingdon island giant tortoise	MODERN SPECIES	273							ENSCABG00000003509	ENSCABG00000003506	RFT1 (ENSCABG00000003429)	PRKCD (ENSCABG00000003419)	PFKFB4 (ENSCABG00000003399)	ENSCABG00000003393	ENSCABG00000003389	SHISA5 (ENSCABG00000003379)	ATRIP (ENSCABG00000003373)	ENSCABG00000003370 #22
Emydidae	ANCESTRAL SPECIES	55	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES		TBX15 (ENSCPBG00000001328)	WARS2 (ENSCPBG00000001321)	HAO2 (ENSCPBG00000000977)	ENSCPBG00000000903	ZNF697 (ENSCPBG00000000872)	ENSCPBG00000000849	MAN1A2 (ENSCPBG00000000822)	CASR (ENSCPBG00000000771)	CSTB (ENSCPBG00000000734)	ENSCPBG00000000698	ENSCPBG00000000690	ENSCPBG00000000652	ENSCPBG00000000622	ENSCPBG00000000611	ENSCPBG00000000368	BTG1 (ENSCPBG00000000318) #22	DCN (ENSCPBG00000000298) #25	LUM (ENSCPBG00000000287) #26	KERA (ENSCPBG00000000270) #27	EPYC (ENSCPBG00000000247) #28	ATP2B1 (ENSCPBG00000000196) #31	POC1B (ENSCPBG00000000137) #32	DUSP6 (ENSCPBG00000000120) #33	ENSCPBG00000000111	KITLG (ENSCPBG00000000109) #35	TMTC3 (ENSCPBG00000000105) #36	CEP290 (ENSCPBG00000000104) #37	C12orf29 (ENSCPBG00000000103)	C12orf50 (ENSCPBG00000000102)	PACS2 (ENSCPBG00000000100)	ENSCPBG00000000099
painted turtle	MODERN SPECIES	2379	GLT8D1 (ENSCPBG00000018340)	ENSCPBG00000018343	NEK4 (ENSCPBG00000018347)	ENSCPBG00000018359	ITIH4 (ENSCPBG00000018372)	ENSCPBG00000018377	MUSTN1 (ENSCPBG00000018383)	STIMATE (ENSCPBG00000018384)	SFMBT1 (ENSCPBG00000018389)	ENSCPBG00000018404	RFT1 (ENSCPBG00000018405)	PRKCD (ENSCPBG00000018408)	PFKFB4 (ENSCPBG00000018418)	SHISA5 (ENSCPBG00000018440)	ATRIP (ENSCPBG00000018445)	ENSCPBG00000018449 #22	IPPK (ENSCPBG00000018452)	ENSCPBG00000018455	ENSCPBG00000018457	ECM2 (ENSCPBG00000018460)	ASPN (ENSCPBG00000018465)
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	28	VEZT (ENSTMTG00000005150)	FGD6 (ENSTMTG00000005044)	NR2C1 (ENSTMTG00000004996)	NDUFA12 (ENSTMTG00000004981) #7	TMCC3 (ENSTMTG00000004970) #8	CEP83 (ENSTMTG00000004938) #9	PLXNC1 (ENSTMTG00000004494) #10	CRADD (ENSTMTG00000004433) #12	SOCS2 (ENSTMTG00000004425) #13	MRPL42 (ENSTMTG00000004417) #14	UBE2NL (ENSTMTG00000004360) ##15	ENSTMTG00000004347 #16	EEA1 (ENSTMTG00000002309) #19	PLEKHG7 (ENSTMTG00000002098) #20	ENSTMTG00000002092	BTG1 (ENSTMTG00000002088) #22	DCN (ENSTMTG00000002080) #25	LUM (ENSTMTG00000002076) #26	KERA (ENSTMTG00000002073) #27	EPYC (ENSTMTG00000002056) #28	ATP2B1 (ENSTMTG00000001708) #31	POC1B (ENSTMTG00000001581) #32	DUSP6 (ENSTMTG00000001574) #33	ENSTMTG00000001565	TMTC3 (ENSTMTG00000001549) #36	CEP290 (ENSTMTG00000000789) #37	C12orf29 (ENSTMTG00000000645)	C12orf50 (ENSTMTG00000000617)	ENSTMTG00000000606	MGAT4C (ENSTMTG00000000597)	NTS (ENSTMTG00000000587)
Three-toed box turtle	MODERN SPECIES	107	GLT8D1 (ENSTMTG00000018281)	ENSTMTG00000018268	NEK4 (ENSTMTG00000018198)	ENSTMTG00000018064	ITIH4 (ENSTMTG00000017860)	ENSTMTG00000017615	MUSTN1 (ENSTMTG00000017576)	STIMATE (ENSTMTG00000017551)	SFMBT1 (ENSTMTG00000017516)	RFT1 (ENSTMTG00000017465)	PRKCD (ENSTMTG00000017366)	ENSTMTG00000017325	ENSTMTG00000017315	SHISA5 (ENSTMTG00000017303)	ATRIP (ENSTMTG00000017274)	ENSTMTG00000017260 #22	ENSTMTG00000017201	IPPK (ENSTMTG00000017169)	ECM2 (ENSTMTG00000017111)	ASPN (ENSTMTG00000017064)	OMD (ENSTMTG00000017048)	OGN (ENSTMTG00000017031)	CENPP (ENSTMTG00000017017)	ENSTMTG00000016992	ENSTMTG00000016954	IARS1 (ENSTMTG00000016725)	ENSTMTG00000016217	SLC6A11 (ENSTMTG00000016054)	SLC6A1 (ENSTMTG00000015874)	HRH1 (ENSTMTG00000015850)	ATG7 (ENSTMTG00000015759)
Archosauria	ANCESTRAL SPECIES	4	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00940000166455	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Australian saltwater crocodile	MODERN SPECIES	49	TCF20 (ENSCPRG00005001855)	CYP2D6 (ENSCPRG00005001872)	NDUFA12 (ENSCPRG00005002076) #7	TMCC3 (ENSCPRG00005002092) #8	CEP83 (ENSCPRG00005002102) #9	PLXNC1 (ENSCPRG00005002155) #10	CRADD (ENSCPRG00005002371) #12	SOCS2 (ENSCPRG00005002373) #13	MRPL42 (ENSCPRG00005002377) #14	ENSCPRG00005002379 ##15	ENSCPRG00005002387 #16	EEA1 (ENSCPRG00005002424) #19	PLEKHG7 (ENSCPRG00005002571) #20	ENSCPRG00005002574	ENSCPRG00005002602	BTG1 (ENSCPRG00005002604) #22	DCN (ENSCPRG00005002631) #25	LUM (ENSCPRG00005002637) #26	KERA (ENSCPRG00005002658) #27	EPYC (ENSCPRG00005002666) #28	ENSCPRG00005002707	ATP2B1 (ENSCPRG00005002742) #31	GALNT4 (ENSCPRG00005002760)	POC1B (ENSCPRG00005002775) #32	DUSP6 (ENSCPRG00005002780) #33	ENSCPRG00005002799 #35	TMTC3 (ENSCPRG00005002825) #36	CEP290 (ENSCPRG00005002831) #37	C12orf29 (ENSCPRG00005002859)	C12orf50 (ENSCPRG00005002861)	ENSCPRG00005002903
Aves	ANCESTRAL SPECIES	1	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Phasianidae	ANCESTRAL SPECIES	16	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.C.b	ENSGT00940000158855	ENSGT00940000156617	ENSGT00940000156703	ENSGT00940000160395	ENSGT00940000155125	ENSGT00940000157127	ENSGT00940000157756	ENSGT00510000046406.f.a	ENSGT01020000230364.a.a.a.a.a.a	ENSGT00390000000980	ENSGT00390000008296.b.a.b	ENSGT00390000012850	ENSGT00950000182952.C #22	ENSGT00390000010053	ENSGT00390000011897	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES		FGD6 (ENSCJPG00005004979)	NR2C1 (ENSCJPG00005004975)	NDUFA12 (ENSCJPG00005004973) #7	SNAPC3 (ENSCJPG00005004972)	TMCC3 (ENSCJPG00005004968) #8	CEP83 (ENSCJPG00005004959) #9	PLXNC1 (ENSCJPG00005004958) #10	CRADD (ENSCJPG00005004955) #12	SOCS2 (ENSCJPG00005004953) #13	ENSCJPG00005004951	UBE2N (ENSCJPG00005004949) ##15	ENSCJPG00005004946 #16	PLEKHG7 (ENSCJPG00005004939) #20	ENSCJPG00005004938	EEA1 (ENSCJPG00005004925) #19	BTG1 (ENSCJPG00005004908) #22	DCN (ENSCJPG00005004901) #25	LUM (ENSCJPG00005004898) #26	KERA (ENSCJPG00005004896) #27	EPYC (ENSCJPG00005004890) #28	ENSCJPG00005004870	ATP2B1 (ENSCJPG00005004865) #31	POC1B (ENSCJPG00005004857) #32	DUSP6 (ENSCJPG00005004855) #33	KITLG (ENSCJPG00005004837) #35	TMTC3 (ENSCJPG00005004834) #36	ENSCJPG00005004825 #37	ENSCJPG00005004813 #37	C12orf29 (ENSCJPG00005004811)	C12orf50 (ENSCJPG00005004807)	MGAT4C (ENSCJPG00005004780)
Japanese quail	MODERN SPECIES	3	ABHD14B (ENSCJPG00005012195)	ENSCJPG00005012196	PCBP4 (ENSCJPG00005012197)	ENSCJPG00005012198	RBM5 (ENSCJPG00005012199)	SEMA3F (ENSCJPG00005012219)	ENSCJPG00005012220	GNAT1 (ENSCJPG00005012221)	GNAI2 (ENSCJPG00005012222)	SLC38A3 (ENSCJPG00005012223)	SEMA3B (ENSCJPG00005012236)	OASL (ENSCJPG00005012237)	HYAL3 (ENSCJPG00005012238)	NAA80 (ENSCJPG00005012239)	ATRIP (ENSCJPG00005012240)	ENSCJPG00005012241 #22	IPPK (ENSCJPG00005012242)	CENPP (ENSCJPG00005012243)	ECM2 (ENSCJPG00005012244)	ASPN (ENSCJPG00005012245)	OMD (ENSCJPG00005012246)	OGN (ENSCJPG00005012247)	ENSCJPG00005012248	IARS1 (ENSCJPG00005012250)	ENSCJPG00005012303	SLC6A11 (ENSCJPG00005012307)	SLC6A1 (ENSCJPG00005012319)	HRH1 (ENSCJPG00005012860)	ATG7 (ENSCJPG00005012861)	VGLL4 (ENSCJPG00005012862)	TAMM41 (ENSCJPG00005012865)
Phasianidae_b	ANCESTRAL SPECIES	16	ENSGT00940000161296	ENSGT00940000159711	ENSGT00950000182998.C.b	ENSGT00940000158855	ENSGT00940000156617	ENSGT00940000156703	ENSGT00940000160395	ENSGT00940000155125	ENSGT00940000157127	ENSGT00940000157756	ENSGT00510000046406.f.a	ENSGT01020000230364.a.a.a.a.a.a	ENSGT00390000000980	ENSGT00390000008296.b.a.b	ENSGT00390000012850	ENSGT00950000182952.C #22	ENSGT00390000010053	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B
Chicken	MODERN SPECIES	3	GNAI2 (ENSGALG00010027608)	SLC38A3 (ENSGALG00010027616)	SEMA3B (ENSGALG00010027626)	OASL (ENSGALG00010027634)	HYAL3 (ENSGALG00010027641)	NAA80 (ENSGALG00010027644)	ENSGALG00010028138	SHISA5 (ENSGALG00010027174)	ENSGALG00010027177	ENSGALG00010028200	ENSGALG00010027179	ENSGALG00010027180	ENSGALG00010027181	ENSGALG00010027182	ATRIP (ENSGALG00010027185)	BTG1L (ENSGALG00010027187) #22	IPPK (ENSGALG00010027190)	ECM2 (ENSGALG00010027198)	BGN (ENSGALG00010027201)	OMD (ENSGALG00010027204)	OGN (ENSGALG00010027205)	CENPP (ENSGALG00010027195)	NOL8 (ENSGALG00010027207)	ENSGALG00010028201	IARS1 (ENSGALG00010027218)	ATP2B2 (ENSGALG00010027231)	SLC6A11 (ENSGALG00010027234)	SLC6A1 (ENSGALG00010027240)	HRH1 (ENSGALG00010027243)	ATG7 (ENSGALG00010027247)	VGLL4 (ENSGALG00010027253)
Turkey	DUPLICATION
Turkey	MODERN SPECIES		ENSMGAG00000020794	FGD6 (ENSMGAG00000011399)	NR2C1 (ENSMGAG00000011385)	NDUFA12 (ENSMGAG00000021922) #7	ENSMGAG00000011378	TMCC3 (ENSMGAG00000011372) #8	CEP83 (ENSMGAG00000011364) #9	PLXNC1 (ENSMGAG00000011352) #10	CRADD (ENSMGAG00000011351) #12	SOCS2 (ENSMGAG00000020134) #13	ENSMGAG00000011346	ENSMGAG00000011339 ##15	ENSMGAG00000011329 #16	EEA1 (ENSMGAG00000011316) #19	PLEKHG7 (ENSMGAG00000011307) #20	BTG1 (ENSMGAG00000015697) #22	DCN (ENSMGAG00000011286) #25	LUM (ENSMGAG00000011279) #26	KERA (ENSMGAG00000011304) #27	EPYC (ENSMGAG00000011274) #28	ENSMGAG00000019578	ATP2B1 (ENSMGAG00000011245) #31	GALNT4 (ENSMGAG00000015696)	POC1B (ENSMGAG00000011227) #32	DUSP6 (ENSMGAG00000011218) #33	KITLG (ENSMGAG00000011203) #35	TMTC3 (ENSMGAG00000011193) #36	CEP290 (ENSMGAG00000011158) #37	C12orf29 (ENSMGAG00000011149)	ENSMGAG00000015695	MGAT4C (ENSMGAG00000011146)
Turkey	MODERN SPECIES	5	SEMA3G (ENSMGAG00000003588)	ACY1 (ENSMGAG00000003829)	ABHD14A (ENSMGAG00000022018)	PCBP4 (ENSMGAG00000005091)	ENSMGAG00000003926	PARP3 (ENSMGAG00000003932)	ENSMGAG00000003972	ENSMGAG00000004057	ENSMGAG00000005486	ENSMGAG00000018097	HYAL3 (ENSMGAG00000020223)	ENSMGAG00000016195	ENSMGAG00000005579	ENSMGAG00000004349	ENSMGAG00000004355	ENSMGAG00000020168 #22	IPPK (ENSMGAG00000004386)	ENSMGAG00000004404	ECM2 (ENSMGAG00000004416)	ASPN (ENSMGAG00000004429)	OMD (ENSMGAG00000004463)	OGN (ENSMGAG00000004478)	NOL8 (ENSMGAG00000004495)	IARS1 (ENSMGAG00000004555)	ENSMGAG00000004661	SLC6A11 (ENSMGAG00000004717)	SLC6A1 (ENSMGAG00000004819)	HRH1 (ENSMGAG00000004868)	ATG7 (ENSMGAG00000004873)	ENSMGAG00000019207	VGLL4 (ENSMGAG00000004921)
Anatidae	ANCESTRAL SPECIES	14	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.a ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Pink-footed goose	MODERN SPECIES	22	VEZT (ENSABRG00000011508)	FGD6 (ENSABRG00000011430)	NR2C1 (ENSABRG00000010879)	NDUFA12 (ENSABRG00000010827) #7	TMCC3 (ENSABRG00000010805) #8	CEP83 (ENSABRG00000010782) #9	PLXNC1 (ENSABRG00000010772) #10	CRADD (ENSABRG00000010757) #12	SOCS2 (ENSABRG00000010744) #13	MRPL42 (ENSABRG00000010739) #14	UBE2NL (ENSABRG00000010730) ##15	ENSABRG00000010725 #16	EEA1 (ENSABRG00000010681) #19	PLEKHG7 (ENSABRG00000010655) #20	ENSABRG00000010648	BTG1 (ENSABRG00000010638) #22	ENSABRG00000010628	DCN (ENSABRG00000010608) #25	LUM (ENSABRG00000010604) #26	KERA (ENSABRG00000010603) #27	EPYC (ENSABRG00000010599) #28	ENSABRG00000010587	ATP2B1 (ENSABRG00000010574) #31	POC1B (ENSABRG00000010558) #32	DUSP6 (ENSABRG00000010554) #33	KITLG (ENSABRG00000010547) #35	TMTC3 (ENSABRG00000010540) #36	CEP290 (ENSABRG00000010277) #37	C12orf29 (ENSABRG00000010259)	C12orf50 (ENSABRG00000010255)	MGAT4C (ENSABRG00000010240)
Duck	DUPLICATION
Duck	MODERN SPECIES		METAP2 (ENSAPLG00000004742)	VEZT (ENSAPLG00000005408)	FGD6 (ENSAPLG00000005867)	NR2C1 (ENSAPLG00000006253)	ENSAPLG00000015463 #7	TMCC3 (ENSAPLG00000015453) #8	CEP83 (ENSAPLG00000015313) #9	PLXNC1 (ENSAPLG00000015114) #10	CRADD (ENSAPLG00000015058) #12	SOCS2 (ENSAPLG00000001565) #13	MRPL42 (ENSAPLG00000015057) #14	UBE2NL (ENSAPLG00000014911) ##15	ENSAPLG00000031124 #16	EEA1 (ENSAPLG00000014455) #19	PLEKHG7 (ENSAPLG00000014424) #20	BTG1 (ENSAPLG00000020200) #22	DCN (ENSAPLG00000013984) #25	LUM (ENSAPLG00000013979) #26	KERA (ENSAPLG00000013949) #27	ATP2B1 (ENSAPLG00000009887) #31	POC1B (ENSAPLG00000011048) #32	DUSP6 (ENSAPLG00000024182) #33	KITLG (ENSAPLG00000011383) #35	TMTC3 (ENSAPLG00000013102) #36	CEP290 (ENSAPLG00000011991) #37	C12orf29 (ENSAPLG00000013468)	C12orf50 (ENSAPLG00000013487)	ENSAPLG00000024557	MGAT4C (ENSAPLG00000002108)	NTS (ENSAPLG00000018978)	RASSF9 (ENSAPLG00000001547)
Duck	MODERN SPECIES	4	RNF123 (ENSAPLG00000007425)	ENSAPLG00000022689	IP6K1 (ENSAPLG00000008308)	ENSAPLG00000026128	DAG1 (ENSAPLG00000023906)	ENSAPLG00000019124	ENSAPLG00000029769	ENSAPLG00000004100	MST1R (ENSAPLG00000025617)	MON1A (ENSAPLG00000003867)	RBM6 (ENSAPLG00000003536)	ENSAPLG00000002626	RAD54L2 (ENSAPLG00000002121)	SHISA5 (ENSAPLG00000004471)	ATRIP (ENSAPLG00000004472)	ENSAPLG00000004696 #22	IPPK (ENSAPLG00000004734)	ECM2 (ENSAPLG00000005118)	ASPN (ENSAPLG00000005186)	OMD (ENSAPLG00000005369)	OGN (ENSAPLG00000005371)	CENPP (ENSAPLG00000004924)	NOL8 (ENSAPLG00000005526)	IARS1 (ENSAPLG00000005750)	ENSAPLG00000023001	ENSAPLG00000030112	ATP2B2 (ENSAPLG00000006083)	SLC6A11 (ENSAPLG00000006803)	SLC6A1 (ENSAPLG00000010815)	ENSAPLG00000024336	HRH1 (ENSAPLG00000011710)
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00940000166455	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c	ENSGT00940000158251
Golden eagle	DUPLICATION
Golden eagle	MODERN SPECIES	18	VEZT (ENSACCG00020014952)	FGD6 (ENSACCG00020015006)	NR2C1 (ENSACCG00020015077)	NDUFA12 (ENSACCG00020015116) #7	TMCC3 (ENSACCG00020015134) #8	CEP83 (ENSACCG00020015148) #9	PLXNC1 (ENSACCG00020015195) #10	CRADD (ENSACCG00020015241) #12	SOCS2 (ENSACCG00020015259) #13	MRPL42 (ENSACCG00020015277) #14	UBE2N (ENSACCG00020015291) ##15	ENSACCG00020015302 #16	EEA1 (ENSACCG00020015350) #19	PLEKHG7 (ENSACCG00020015414) #20	ENSACCG00020015435	BTG1 (ENSACCG00020015451) #22	DCN (ENSACCG00020015463) #25	LUM (ENSACCG00020015475) #26	KERA (ENSACCG00020015488) #27	EPYC (ENSACCG00020015502) #28	ATP2B1 (ENSACCG00020015530) #31	POC1B (ENSACCG00020015564) #32	DUSP6 (ENSACCG00020015579) #33	KITLG (ENSACCG00020015592) #35	ENSACCG00020015608	TMTC3 (ENSACCG00020015635) #36	CEP290 (ENSACCG00020015797) #37	C12orf29 (ENSACCG00020015944)	MGAT4C (ENSACCG00020015955)	NTS (ENSACCG00020015965)	RASSF9 (ENSACCG00020015979)
Golden eagle	MODERN SPECIES	12	DAG1 (ENSACCG00020010654)	NICN1 (ENSACCG00020010645)	AMT (ENSACCG00020010632)	ENSACCG00020010621	INKA1 (ENSACCG00020010592)	ENSACCG00020010583	ENSACCG00020010567	IP6K1 (ENSACCG00020010558)	GMPPB (ENSACCG00020010546)	AMIGO3 (ENSACCG00020010537)	RNF123 (ENSACCG00020010503)	ENSACCG00020010489	ENSACCG00020010463	SHISA5 (ENSACCG00020010448)	ATRIP (ENSACCG00020010423)	ENSACCG00020010403 #22	IPPK (ENSACCG00020010382)	ECM2 (ENSACCG00020010326)	ASPN (ENSACCG00020010311)	OMD (ENSACCG00020010302)	OGN (ENSACCG00020010290)	CENPP (ENSACCG00020010278)	NOL8 (ENSACCG00020010262)	ENSACCG00020010237	ENSACCG00020010223	ENSACCG00020010204	ENSACCG00020010173	IARS1 (ENSACCG00020010143)	ATP2B2 (ENSACCG00020010108)	SLC6A11 (ENSACCG00020010066)	SLC6A1 (ENSACCG00020010053)
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	20	ENSSHBG00005010873	FGD6 (ENSSHBG00005010815)	NR2C1 (ENSSHBG00005010700)	NDUFA12 (ENSSHBG00005010548) #7	TMCC3 (ENSSHBG00005010520) #8	CEP83 (ENSSHBG00005010473) #9	PLXNC1 (ENSSHBG00005010441) #10	CRADD (ENSSHBG00005010417) #12	SOCS2 (ENSSHBG00005010395) #13	MRPL42 (ENSSHBG00005010346) #14	UBE2N (ENSSHBG00005010298) #15	ENSSHBG00005010278 #16	ENSSHBG00005010245 #19	ENSSHBG00005010171 #19	PLEKHG7 (ENSSHBG00005010101) #20	BTG1 (ENSSHBG00005010042) #22	DCN (ENSSHBG00005010001) #25	LUM (ENSSHBG00005009978) #26	KERA (ENSSHBG00005000440) #27	EPYC (ENSSHBG00005007146) #28	ATP2B1 (ENSSHBG00005007062) #31	POC1B (ENSSHBG00005007016) #32	DUSP6 (ENSSHBG00005006994) #33	KITLG (ENSSHBG00005006979) #35	TMTC3 (ENSSHBG00005006944) #36	CEP290 (ENSSHBG00005005725) #37	C12orf29 (ENSSHBG00005005351)	MGAT4C (ENSSHBG00005005332)	NTS (ENSSHBG00005005318)	RASSF9 (ENSSHBG00005005303)	ENSSHBG00005005293
Kakapo	MODERN SPECIES	3	AMT (ENSSHBG00005017258)	ENSSHBG00005017254	ENSSHBG00005017246	INKA1 (ENSSHBG00005017240)	IP6K1 (ENSSHBG00005017236)	GMPPB (ENSSHBG00005017233)	AMIGO3 (ENSSHBG00005017230)	RNF123 (ENSSHBG00005011824)	ENSSHBG00005010868	ENSSHBG00005010833	ENSSHBG00005010797	ENSSHBG00005010825	ENSSHBG00005010746	SHISA5 (ENSSHBG00005010703)	ATRIP (ENSSHBG00005010645)	ENSSHBG00005010620 #22	IPPK (ENSSHBG00005010544)	ENSSHBG00005010495	ECM2 (ENSSHBG00005000964)	ASPN (ENSSHBG00005000961)	OMD (ENSSHBG00005000958)	OGN (ENSSHBG00005010777)	CENPP (ENSSHBG00005010756)	ENSSHBG00005010716	ENSSHBG00005010656	ENSSHBG00005010633	IARS1 (ENSSHBG00005009904)	ATP2B2 (ENSSHBG00005009663)	SLC6A11 (ENSSHBG00005009639)	SLC6A1 (ENSSHBG00005009619)	HRH1 (ENSSHBG00005009603)
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000189352	ENSGT00940000166455	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Great tit	DUPLICATION
Great tit	MODERN SPECIES	10	ENSPMJG00000012889	FGD6 (ENSPMJG00000012888)	NR2C1 (ENSPMJG00000012886)	NDUFA12 (ENSPMJG00000012885) #7	TMCC3 (ENSPMJG00000012883) #8	CEP83 (ENSPMJG00000012882) #9	PLXNC1 (ENSPMJG00000012861) #10	CRADD (ENSPMJG00000012860) #12	SOCS2 (ENSPMJG00000012859) #13	MRPL42 (ENSPMJG00000012858) #14	UBE2N (ENSPMJG00000012857) #15	ENSPMJG00000012856 #16	PLEKHG7 (ENSPMJG00000012853) #20	EEA1 (ENSPMJG00000012852) #19	ENSPMJG00000012851	BTG1 (ENSPMJG00000012849) #22	DCN (ENSPMJG00000012847) #25	LUM (ENSPMJG00000012846) #26	KERA (ENSPMJG00000012845) #27	EPYC (ENSPMJG00000012844) #28	ATP2B1 (ENSPMJG00000012841) #31	POC1B (ENSPMJG00000012840) #32	DUSP6 (ENSPMJG00000012839) #33	KITLG (ENSPMJG00000012834) #35	TMTC3 (ENSPMJG00000012833) #36	CEP290 (ENSPMJG00000012693) #37	C12orf29 (ENSPMJG00000012692)	C12orf50 (ENSPMJG00000012691)	MGAT4C (ENSPMJG00000012690)	NTS (ENSPMJG00000012689)	RASSF9 (ENSPMJG00000012688)
Great tit	MODERN SPECIES	3	ENSPMJG00000005150	MST1 (ENSPMJG00000005145)	DAG1 (ENSPMJG00000005143)	NICN1 (ENSPMJG00000005141)	AMT (ENSPMJG00000005136)	ENSPMJG00000005132	INKA1 (ENSPMJG00000005131)	CDHR4 (ENSPMJG00000005126)	IP6K1 (ENSPMJG00000005125)	GMPPB (ENSPMJG00000005122)	AMIGO3 (ENSPMJG00000005120)	RNF123 (ENSPMJG00000005111)	SHISA5 (ENSPMJG00000005107)	ATRIP (ENSPMJG00000005102)	ENSPMJG00000005100	ENSPMJG00000005098 #22	IPPK (ENSPMJG00000005095)	ECM2 (ENSPMJG00000005093)	ASPN (ENSPMJG00000005091)	OMD (ENSPMJG00000005090)	OGN (ENSPMJG00000005089)	CENPP (ENSPMJG00000005088)	ENSPMJG00000005087	ENSPMJG00000005086	ENSPMJG00000005084	GP9 (ENSPMJG00000005082)	RAB43 (ENSPMJG00000005081)	ENSPMJG00000005079	ISY1 (ENSPMJG00000005074)	ENSPMJG00000005069	ENSPMJG00000005065
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.d ##15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	34	METAP2 (ENSGFOG00000001658)	VEZT (ENSGFOG00000001628)	FGD6 (ENSGFOG00000001482)	NR2C1 (ENSGFOG00000001442)	NDUFA12 (ENSGFOG00000001433) #7	TMCC3 (ENSGFOG00000001427) #8	CEP83 (ENSGFOG00000001406) #9	PLXNC1 (ENSGFOG00000001179) #10	CRADD (ENSGFOG00000001141) #12	SOCS2 (ENSGFOG00000001136) #13	MRPL42 (ENSGFOG00000001126) #14	ENSGFOG00000001110 ##15	ENSGFOG00000001074 #16	EEA1 (ENSGFOG00000001020) #19	PLEKHG7 (ENSGFOG00000000998) #20	BTG1 (ENSGFOG00000000995) #22	DCN (ENSGFOG00000000982) #25	LUM (ENSGFOG00000000979) #26	KERA (ENSGFOG00000000973) #27	EPYC (ENSGFOG00000000962) #28	ATP2B1 (ENSGFOG00000000887) #31	GALNT4 (ENSGFOG00000000869)	POC1B (ENSGFOG00000000859) #32	DUSP6 (ENSGFOG00000000849) #33	KITLG (ENSGFOG00000000811) #35	TMTC3 (ENSGFOG00000000793) #36	CEP290 (ENSGFOG00000000639) #37	C12orf29 (ENSGFOG00000000538)	MGAT4C (ENSGFOG00000000520)	NTS (ENSGFOG00000000507)	RASSF9 (ENSGFOG00000000499)
Medium ground finch	MODERN SPECIES	42	CAMKV (ENSGFOG00000008381)	TRAIP (ENSGFOG00000008362)	BSN (ENSGFOG00000008331)	MST1 (ENSGFOG00000008248)	DAG1 (ENSGFOG00000008243)	NICN1 (ENSGFOG00000008232)	AMT (ENSGFOG00000008224)	ENSGFOG00000008212	ENSGFOG00000008206	IP6K1 (ENSGFOG00000008195)	GMPPB (ENSGFOG00000008187)	AMIGO3 (ENSGFOG00000008182)	RNF123 (ENSGFOG00000007643)	SHISA5 (ENSGFOG00000007584)	ATRIP (ENSGFOG00000007571)	ENSGFOG00000007563 #22	IPPK (ENSGFOG00000007542)	ECM2 (ENSGFOG00000007530)	ASPN (ENSGFOG00000007523)	OMD (ENSGFOG00000007514)	OGN (ENSGFOG00000007507)	CENPP (ENSGFOG00000007493)	NOL8 (ENSGFOG00000007484)
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000163607	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	11	USP44 (ENSTGUG00000024797)	METAP2 (ENSTGUG00000008438)	VEZT (ENSTGUG00000008420)	FGD6 (ENSTGUG00000008398)	NR2C1 (ENSTGUG00000008363)	NDUFA12 (ENSTGUG00000022977) #7	TMCC3 (ENSTGUG00000008330) #8	CEP83 (ENSTGUG00000008314) #9	PLXNC1 (ENSTGUG00000008290) #10	CRADD (ENSTGUG00000022539) #12	MRPL42 (ENSTGUG00000008272) #14	UBE2N (ENSTGUG00000027866) #15	NUDT4 (ENSTGUG00000008253) #16	EEA1 (ENSTGUG00000008213) #19	PLEKHG7 (ENSTGUG00000008208) #20	BTG1 (ENSTGUG00000008207) #22	DCN (ENSTGUG00000008178) #25	LUM (ENSTGUG00000008175) #26	KERA (ENSTGUG00000008172) #27	EPYC (ENSTGUG00000008157) #28	ATP2B1 (ENSTGUG00000008087) #31	GALNT4 (ENSTGUG00000020755)	POC1B (ENSTGUG00000008063) #32	DUSP6 (ENSTGUG00000008053) #33	KITLG (ENSTGUG00000008039) #35	TMTC3 (ENSTGUG00000008029) #36	CEP290 (ENSTGUG00000007963) #37	C12orf29 (ENSTGUG00000007945)	ENSTGUG00000025254	MGAT4C (ENSTGUG00000007933)	NTS (ENSTGUG00000027877)
Zebra finch	MODERN SPECIES	3	BSN (ENSTGUG00000005096)	APEH (ENSTGUG00000005100)	MST1 (ENSTGUG00000005137)	DAG1 (ENSTGUG00000005169)	NICN1 (ENSTGUG00000005184)	AMT (ENSTGUG00000005187)	ENSTGUG00000025276	ENSTGUG00000005223	INKA1 (ENSTGUG00000005233)	ENSTGUG00000018966	IP6K1 (ENSTGUG00000005235)	GMPPB (ENSTGUG00000005252)	RNF123 (ENSTGUG00000005277)	SHISA5 (ENSTGUG00000018773)	ATRIP (ENSTGUG00000005323)	ENSTGUG00000005335 #22	IPPK (ENSTGUG00000005337)	ECM2 (ENSTGUG00000027826)	OMD (ENSTGUG00000024916)	ASPN (ENSTGUG00000005362)	OGN (ENSTGUG00000020325)	CENPP (ENSTGUG00000005355)	NOL8 (ENSTGUG00000005411)	ENSTGUG00000019871	ENSTGUG00000004531	ENSTGUG00000022033	SFMBT1 (ENSTGUG00000005471)	STIMATE (ENSTGUG00000025639)	MUSTN1 (ENSTGUG00000005545)	ITIH4 (ENSTGUG00000005546)	ITIH3 (ENSTGUG00000005650)
Common canary	DUPLICATION
Common canary	MODERN SPECIES	6	METAP2 (ENSSCAG00000007139)	VEZT (ENSSCAG00000007210)	FGD6 (ENSSCAG00000007262)	NR2C1 (ENSSCAG00000007270)	NDUFA12 (ENSSCAG00000007282) #7	TMCC3 (ENSSCAG00000007289) #8	CEP83 (ENSSCAG00000007295) #9	PLXNC1 (ENSSCAG00000007322) #10	CRADD (ENSSCAG00000007382) #12	SOCS2 (ENSSCAG00000007388) #13	MRPL42 (ENSSCAG00000007396) #14	ENSSCAG00000007401 ##15	ENSSCAG00000007407 #16	EEA1 (ENSSCAG00000007427) #19	PLEKHG7 (ENSSCAG00000007449) #20	BTG1 (ENSSCAG00000007462) #22	DCN (ENSSCAG00000007490) #25	LUM (ENSSCAG00000007495) #26	KERA (ENSSCAG00000007497) #27	EPYC (ENSSCAG00000007511) #28	ATP2B1 (ENSSCAG00000007529) #31	POC1B (ENSSCAG00000007550) #32	DUSP6 (ENSSCAG00000007553) #33	KITLG (ENSSCAG00000007562) #35	TMTC3 (ENSSCAG00000007568) #36	CEP290 (ENSSCAG00000007595) #37	C12orf29 (ENSSCAG00000007807)	TMTC2 (ENSSCAG00000007852)	SLC6A15 (ENSSCAG00000007869)	ENSSCAG00000007880	ALX1 (ENSSCAG00000007890)
Common canary	MODERN SPECIES	15	TRAIP (ENSSCAG00000000079)	BSN (ENSSCAG00000013512)	APEH (ENSSCAG00000013468)	MST1 (ENSSCAG00000013447)	DAG1 (ENSSCAG00000013427)	NICN1 (ENSSCAG00000013412)	AMT (ENSSCAG00000013406)	ENSSCAG00000013320	ENSSCAG00000013278	IP6K1 (ENSSCAG00000013259)	GMPPB (ENSSCAG00000013246)	AMIGO3 (ENSSCAG00000013237)	RNF123 (ENSSCAG00000012829)	SHISA5 (ENSSCAG00000012751)	ATRIP (ENSSCAG00000012746)	ENSSCAG00000012740 #22	IPPK (ENSSCAG00000012726)	ECM2 (ENSSCAG00000012714)	ASPN (ENSSCAG00000012710)	OMD (ENSSCAG00000012707)	OGN (ENSSCAG00000012703)	CENPP (ENSSCAG00000012700)	ENSSCAG00000012697	IARS1 (ENSSCAG00000012686)	ATP2B2 (ENSSCAG00000012674)	SLC6A11 (ENSSCAG00000012356)	SLC6A1 (ENSSCAG00000011359)	HRH1 (ENSSCAG00000011131)	ATG7 (ENSSCAG00000011122)	VGLL4 (ENSSCAG00000011116)	TAMM41 (ENSSCAG00000011113)
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES	10	VEZT (ENSFALG00000010771)	ENSFALG00000025900	FGD6 (ENSFALG00000010763)	NR2C1 (ENSFALG00000010759)	NDUFA12 (ENSFALG00000010757) #7	TMCC3 (ENSFALG00000010752) #8	CEP83 (ENSFALG00000010746) #9	PLXNC1 (ENSFALG00000010728) #10	CRADD (ENSFALG00000010722) #12	SOCS2 (ENSFALG00000010719) #13	MRPL42 (ENSFALG00000010717) #14	ENSFALG00000027396 ##15	ENSFALG00000010693 #16	EEA1 (ENSFALG00000010681) #19	PLEKHG7 (ENSFALG00000010678) #20	BTG1 (ENSFALG00000010673) #22	DCN (ENSFALG00000024468) #25	LUM (ENSFALG00000010654) #26	KERA (ENSFALG00000010649) #27	EPYC (ENSFALG00000010642) #28	ATP2B1 (ENSFALG00000010638) #31	GALNT4 (ENSFALG00000014820)	POC1B (ENSFALG00000010636) #32	DUSP6 (ENSFALG00000010634) #33	KITLG (ENSFALG00000010632) #35	TMTC3 (ENSFALG00000010626) #36	CEP290 (ENSFALG00000010610) #37	C12orf29 (ENSFALG00000023606)	C12orf50 (ENSFALG00000010559)	MGAT4C (ENSFALG00000010557)	NTS (ENSFALG00000025234)
Flycatcher	MODERN SPECIES	3	ENSFALG00000026457	ENSFALG00000008998	MST1 (ENSFALG00000009004)	ENSFALG00000009006	ENSFALG00000009009	ENSFALG00000009016	ENSFALG00000028377	ENSFALG00000009022	ENSFALG00000009028	IP6K1 (ENSFALG00000024307)	ENSFALG00000009040	ENSFALG00000014350	ENSFALG00000009033	ENSFALG00000025125	ENSFALG00000009049	ENSFALG00000014354 #22	IPPK (ENSFALG00000009050)	ENSFALG00000009057	ASPN (ENSFALG00000009060)	OMD (ENSFALG00000009063)	OGN (ENSFALG00000009064)	CENPP (ENSFALG00000024002)	NOL8 (ENSFALG00000009066)	ENSFALG00000009075	ENSFALG00000023030	IARS1 (ENSFALG00000010261)	ENSFALG00000000003	ENSFALG00000028800	SLC6A11 (ENSFALG00000000004)	SLC6A1 (ENSFALG00000000005)	HRH1 (ENSFALG00000014152)
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	589	VEZT (ENSSCUG00000008519)	FGD6 (ENSSCUG00000008522)	NR2C1 (ENSSCUG00000008527)	NDUFA12 (ENSSCUG00000008530) #7	TMCC3 (ENSSCUG00000008533) #8	CEP83 (ENSSCUG00000008536) #9	PLXNC1 (ENSSCUG00000008541) #10	CRADD (ENSSCUG00000008545) #12	ENSSCUG00000008547	MRPL42 (ENSSCUG00000008548) #14	ENSSCUG00000008550 ##15	ENSSCUG00000008552 #16	EEA1 (ENSSCUG00000008565) #19	PLEKHG7 (ENSSCUG00000008576) #20	ENSSCUG00000008579	BTG1 (ENSSCUG00000008582) #22	DCN (ENSSCUG00000008592) #25	LUM (ENSSCUG00000008593) #26	KERA (ENSSCUG00000008595) #27	EPYC (ENSSCUG00000008596) #28	ATP2B1 (ENSSCUG00000008607) #31	GALNT4 (ENSSCUG00000008611)	POC1B (ENSSCUG00000008613) #32	DUSP6 (ENSSCUG00000008616) #33	KITLG (ENSSCUG00000008623) #35	TMTC3 (ENSSCUG00000008624) #36	CEP290 (ENSSCUG00000008633) #37	C12orf29 (ENSSCUG00000008665)	MGAT4C (ENSSCUG00000008674)	NTS (ENSSCUG00000008676)	RASSF9 (ENSSCUG00000008680)
African ostrich	MODERN SPECIES	1066											ENSSCUG00000014813	ENSSCUG00000014815	SHISA5 (ENSSCUG00000014816)	ATRIP (ENSSCUG00000014821)	IPPK (ENSSCUG00000014825)	ENSSCUG00000014833 #22	CENPP (ENSSCUG00000014836)	ECM2 (ENSSCUG00000014847)	ASPN (ENSSCUG00000014857)	OMD (ENSSCUG00000014863)	OGN (ENSSCUG00000014870)	NOL8 (ENSSCUG00000014881)	IARS1 (ENSSCUG00000014894)	ATP2B2 (ENSSCUG00000014930)	SLC6A11 (ENSSCUG00000014961)	SLC6A1 (ENSSCUG00000014975)	HRH1 (ENSSCUG00000014994)	ATG7 (ENSSCUG00000015003)	VGLL4 (ENSSCUG00000015010)	TAMM41 (ENSSCUG00000015017)	TIMP4 (ENSSCUG00000015038)
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT01100000263502.A.b.b	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Episquamata	ANCESTRAL SPECIES	3	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.a ##15	ENSGT00940000165713	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000191298	ENSGT01100000263502.A.b.b	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Laterata	ANCESTRAL SPECIES	6	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00940000165713	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000191298	ENSGT01100000263502.A.b.b	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	1	ENSPMRG00000010578	ENSPMRG00000010576	TMCC3 (ENSPMRG00000010571) #8	CEP83 (ENSPMRG00000010479) #9	PLXNC1 (ENSPMRG00000010427) #10	CRADD (ENSPMRG00000010417) #12	SOCS2 (ENSPMRG00000010409) #13	ENSPMRG00000010403	ENSPMRG00000010391 #14	ENSPMRG00000010387 ##15	ENSPMRG00000010382 #16	EEA1 (ENSPMRG00000009911) #19	PLEKHG7 (ENSPMRG00000009770) #20	ENSPMRG00000009762	ENSPMRG00000009754	BTG1 (ENSPMRG00000009745) #22	DCN (ENSPMRG00000009734) #25	LUM (ENSPMRG00000009728) #26	KERA (ENSPMRG00000009717) #27	EPYC (ENSPMRG00000009708) #28	ATP2B1 (ENSPMRG00000009626) #31	POC1B (ENSPMRG00000009538) #32	DUSP6 (ENSPMRG00000009510) #33	KITLG (ENSPMRG00000009468) #35	TMTC3 (ENSPMRG00000009460) #36	CEP290 (ENSPMRG00000009187) #37	C12orf29 (ENSPMRG00000009111)	C12orf50 (ENSPMRG00000009099)	MGAT4C (ENSPMRG00000009090)	NTS (ENSPMRG00000009086)	RASSF9 (ENSPMRG00000021551)
Common wall lizard	MODERN SPECIES	10	GLT8D1 (ENSPMRG00000011170)	SPCS1 (ENSPMRG00000011177)	NEK4 (ENSPMRG00000011179)	ITIH3 (ENSPMRG00000011271)	ENSPMRG00000011754	ENSPMRG00000011828	MUSTN1 (ENSPMRG00000012139)	STIMATE (ENSPMRG00000012147)	SFMBT1 (ENSPMRG00000012179)	RFT1 (ENSPMRG00000012268)	ENSPMRG00000012279	PFKFB4 (ENSPMRG00000012281)	SHISA5 (ENSPMRG00000012299)	TREX1 (ENSPMRG00000012304)	ATRIP (ENSPMRG00000012306)	ENSPMRG00000012317 #22	IPPK (ENSPMRG00000012321)	CENPP (ENSPMRG00000012335)	ECM2 (ENSPMRG00000012343)	ASPN (ENSPMRG00000012349)	OMD (ENSPMRG00000012352)	OGN (ENSPMRG00000012356)	ENSPMRG00000012360	ENSPMRG00000012376	IARS1 (ENSPMRG00000012391)	ENSPMRG00000012464	ENSPMRG00000012467	ENSPMRG00000012475	ATP2B2 (ENSPMRG00000012496)	SLC6A11 (ENSPMRG00000012549)	SLC6A1 (ENSPMRG00000012556)
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	6	FGD6 (ENSSMRG00000011192)	NR2C1 (ENSSMRG00000011186)	NDUFA12 (ENSSMRG00000011151) #7	TMCC3 (ENSSMRG00000011148) #8	CEP83 (ENSSMRG00000011143) #9	PLXNC1 (ENSSMRG00000011138) #10	ENSSMRG00000011074	CRADD (ENSSMRG00000011072) #12	SOCS2 (ENSSMRG00000011073) #13	ENSSMRG00000011071	UBE2N (ENSSMRG00000011068) #15	ENSSMRG00000011067 #16	EEA1 (ENSSMRG00000011043) #19	PLEKHG7 (ENSSMRG00000011042) #20	ENSSMRG00000011016	BTG1 (ENSSMRG00000011013) #22	DCN (ENSSMRG00000010964) #25	LUM (ENSSMRG00000010908) #26	KERA (ENSSMRG00000010906) #27	EPYC (ENSSMRG00000010905) #28	ATP2B1 (ENSSMRG00000010868) #31	POC1B (ENSSMRG00000010862) #32	DUSP6 (ENSSMRG00000010860) #33	ENSSMRG00000010806	KITLG (ENSSMRG00000010800) #35	TMTC3 (ENSSMRG00000010767) #36	CEP290 (ENSSMRG00000010531) #37	C12orf29 (ENSSMRG00000010527)	C12orf50 (ENSSMRG00000010526)	MGAT4C (ENSSMRG00000010507)	NTS (ENSSMRG00000010506)
Argentine black and white tegu	MODERN SPECIES	8	SPCS1 (ENSSMRG00000014820)	NEK4 (ENSSMRG00000014821)	ENSSMRG00000014823	ENSSMRG00000014824	ENSSMRG00000014827	ITIH4 (ENSSMRG00000014831)	MUSTN1 (ENSSMRG00000014833)	STIMATE (ENSSMRG00000014834)	SFMBT1 (ENSSMRG00000014836)	RFT1 (ENSSMRG00000014837)	PRKCD (ENSSMRG00000014838)	PFKFB4 (ENSSMRG00000014839)	SHISA5 (ENSSMRG00000014841)	TREX1 (ENSSMRG00000014842)	ATRIP (ENSSMRG00000014843)	ENSSMRG00000014844 #22	IPPK (ENSSMRG00000014845)	ENSSMRG00000014846	ECM2 (ENSSMRG00000014847)	ASPN (ENSSMRG00000014848)	OMD (ENSSMRG00000014849)	OGN (ENSSMRG00000014850)	ENSSMRG00000014853	RPL29 (ENSSMRG00000014854)	IARS1 (ENSSMRG00000014856)	ENSSMRG00000014887	SLC6A11 (ENSSMRG00000019567)	SLC6A1 (ENSSMRG00000019568)	HRH1 (ENSSMRG00000019569)	ATG7 (ENSSMRG00000019571)	VGLL4 (ENSSMRG00000019572)
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00390000005848 #7	ENSGT00940000157275 #8	ENSGT00940000154003.A #9	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #10	ENSGT00390000014448 #12	ENSGT00940000157983 #13	ENSGT00390000010491 #14	ENSGT00540000070023.c.b.a ##15	ENSGT00940000165713	ENSGT00540000070023.c.b.b #15	ENSGT00940000155210.a.b #16	ENSGT00940000156910 #19	ENSGT00510000046843.b #20	ENSGT00960000191298	ENSGT01100000263502.A.b.b	ENSGT00950000182952.C #22	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00390000018272 #35	ENSGT00940000157538 #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c	ENSGT00940000158251
Lizard	DUPLICATION
Lizard	MODERN SPECIES	4	NDUFA12 (ENSACAG00000012767) #7	TMCC3 (ENSACAG00000012746) #8	CEP83 (ENSACAG00000012654) #9	PLXNC1 (ENSACAG00000012631) #10	ENSACAG00000042422	CRADD (ENSACAG00000012629) #12	ENSACAG00000043046	SOCS2 (ENSACAG00000012616) #13	ENSACAG00000012606	UBE2N (ENSACAG00000012573) #15	ENSACAG00000012572 #16	ENSACAG00000012450 #19	PLEKHG7 (ENSACAG00000012435) #20	ENSACAG00000029084	ENSACAG00000028626	BTG1 (ENSACAG00000044074) #22	DCN (ENSACAG00000012367) #25	LUM (ENSACAG00000012359) #26	KERA (ENSACAG00000012355) #27	EPYC (ENSACAG00000012287) #28	ENSACAG00000044622	ATP2B1 (ENSACAG00000011979) #31	POC1B (ENSACAG00000011905) #32	DUSP6 (ENSACAG00000011871) #33	KITLG (ENSACAG00000029213) #35	ENSACAG00000042327	TMTC3 (ENSACAG00000011675) #36	CEP290 (ENSACAG00000011324) #37	C12orf29 (ENSACAG00000011252)	C12orf50 (ENSACAG00000011191)	MGAT4C (ENSACAG00000044580)
Lizard	MODERN SPECIES	1	MUSTN1 (ENSACAG00000036067)	STIMATE (ENSACAG00000008201)	SFMBT1 (ENSACAG00000008228)	ENSACAG00000041557	ENSACAG00000037314	RFT1 (ENSACAG00000008376)	ENSACAG00000036622	PRKCD (ENSACAG00000008408)	ENSACAG00000035489	ENSACAG00000008640	ENSACAG00000040687	ENSACAG00000039641	SHISA5 (ENSACAG00000008923)	ENSACAG00000008936	ATRIP (ENSACAG00000008947)	ENSACAG00000042745 #22	ENSACAG00000038141	IPPK (ENSACAG00000009034)	ENSACAG00000040988	ECM2 (ENSACAG00000009093)	ASPN (ENSACAG00000009126)	ENSACAG00000039407	OMD (ENSACAG00000009166)	OGN (ENSACAG00000009170)	ENSACAG00000009087	NOL8 (ENSACAG00000009201)	IARS1 (ENSACAG00000009212)	ENSACAG00000009556	ENSACAG00000036368	ENSACAG00000038899	SLC6A11 (ENSACAG00000009875)
Elapidae	ANCESTRAL SPECIES	2	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.hb.b.a.b	ENSGT00940000154554.a.hb.b.b	ENSGT00940000154554.a.ib	ENSGT00940000154554.a.hb.a	ENSGT00940000161039	ENSGT00940000153920.a.b	ENSGT00940000153920.b	ENSGT00940000157363	ENSGT00390000011390	ENSGT00940000155327	ENSGT00950000182835.c.d	ENSGT00390000008296.b.a.b	ENSGT00390000012850	ENSGT00950000182952.C #22	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000175908	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.d	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B
Elapidae_a	ANCESTRAL SPECIES	8	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.hb.b.a.b.a	ENSGT00940000154554.a.hb.b.b	ENSGT00940000154554.a.ib	ENSGT00940000154554.a.hb.a	ENSGT00940000161039	ENSGT00940000153920.a.b	ENSGT00940000153920.b	ENSGT00940000157363	ENSGT00390000011390	ENSGT00940000155327	ENSGT00950000182835.c.d	ENSGT00390000008296.b.a.b	ENSGT00390000012850	ENSGT00950000182952.C #22	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000175908	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.d	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	2817																BTG1 (ENSLLTG00000001330) #22
Blue-lipped sea krait	MODERN SPECIES	912														SHISA5 (ENSLLTG00000001864)	ATRIP (ENSLLTG00000001854)	ENSLLTG00000001848 #22
Acanthophiinae	ANCESTRAL SPECIES	10	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.hb.b.a.b.a	ENSGT00940000154554.a.hb.b.b	ENSGT00940000154554.a.ib	ENSGT00940000154554.a.hb.a	ENSGT00940000161039	ENSGT00940000153920.a.b	ENSGT00940000153920.b	ENSGT00940000157363	ENSGT00390000011390	ENSGT00940000155327	ENSGT00950000182835.c.d	ENSGT00390000008296.b.a.b	ENSGT00390000012850	ENSGT00950000182952.C #22	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000175908	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.d	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES		VEZT (ENSPTXG00000002614)	FGD6 (ENSPTXG00000002616)	NR2C1 (ENSPTXG00000002618)	NDUFA12 (ENSPTXG00000002622) #7	TMCC3 (ENSPTXG00000002625) #8	CEP83 (ENSPTXG00000002628) #9	PLXNC1 (ENSPTXG00000001805) #10	CRADD (ENSPTXG00000001806) #12	SOCS2 (ENSPTXG00000001807) #13	MRPL42 (ENSPTXG00000001808) #14	UBE2N (ENSPTXG00000001809) ##15	ENSPTXG00000001811 #16	EEA1 (ENSPTXG00000001874) #19	PLEKHG7 (ENSPTXG00000007258) #20	ENSPTXG00000007259	BTG1 (ENSPTXG00000007260) #22	DCN (ENSPTXG00000007261) #25	LUM (ENSPTXG00000007263) #26	KERA (ENSPTXG00000007264) #27	ATP2B1 (ENSPTXG00000007265) #31	POC1B (ENSPTXG00000007266) #32	DUSP6 (ENSPTXG00000007267) #33	KITLG (ENSPTXG00000007268) #35	TMTC3 (ENSPTXG00000007269) #36	CEP290 (ENSPTXG00000007272) #37	C12orf29 (ENSPTXG00000007302)	C12orf50 (ENSPTXG00000007304)	MGAT4C (ENSPTXG00000007305)	NTS (ENSPTXG00000007306)	RASSF9 (ENSPTXG00000007307)	ALX1 (ENSPTXG00000007309)
Eastern brown snake	MODERN SPECIES	3	SPCS1 (ENSPTXG00000006627)	ENSPTXG00000006625	NEK4 (ENSPTXG00000006620)	ENSPTXG00000000665	ENSPTXG00000000124	ENSPTXG00000000085	ITIH4 (ENSPTXG00000000051)	MUSTN1 (ENSPTXG00000000036)	STIMATE (ENSPTXG00000000021)	SFMBT1 (ENSPTXG00000009522)	RFT1 (ENSPTXG00000009513)	PRKCD (ENSPTXG00000009512)	PFKFB4 (ENSPTXG00000009511)	SHISA5 (ENSPTXG00000009510)	ATRIP (ENSPTXG00000009509)	ENSPTXG00000009508 #22	IPPK (ENSPTXG00000009507)	ENSPTXG00000009506	ENSPTXG00000009505	ECM2 (ENSPTXG00000009504)	ASPN (ENSPTXG00000009503)	OMD (ENSPTXG00000009502)	OGN (ENSPTXG00000009501)	NOL8 (ENSPTXG00000009500)	IARS1 (ENSPTXG00000009498)	ATP2B2 (ENSPTXG00000007129)	SLC6A11 (ENSPTXG00000007128)	SLC6A1 (ENSPTXG00000007090)	HRH1 (ENSPTXG00000007087)	ATG7 (ENSPTXG00000007086)	VGLL4 (ENSPTXG00000007085)
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	6	VEZT (ENSNSUG00000016991)	FGD6 (ENSNSUG00000016990)	NR2C1 (ENSNSUG00000016826)	NDUFA12 (ENSNSUG00000016825) #7	TMCC3 (ENSNSUG00000016824) #8	CEP83 (ENSNSUG00000016823) #9	ENSNSUG00000016822 #10	CRADD (ENSNSUG00000016821) #12	SOCS2 (ENSNSUG00000016820) #13	MRPL42 (ENSNSUG00000016819) #14	UBE2N (ENSNSUG00000016818) ##15	ENSNSUG00000016817 #16	EEA1 (ENSNSUG00000016662) #19	PLEKHG7 (ENSNSUG00000016661) #20	ENSNSUG00000016660	BTG1 (ENSNSUG00000016659) #22	ENSNSUG00000016658	DCN (ENSNSUG00000016657) #25	LUM (ENSNSUG00000016656) #26	KERA (ENSNSUG00000016655) #27	ATP2B1 (ENSNSUG00000016389) #31	POC1B (ENSNSUG00000016388) #32	DUSP6 (ENSNSUG00000016387) #33	KITLG (ENSNSUG00000016375) #35	TMTC3 (ENSNSUG00000016374) #36	ENSNSUG00000016373 #37	ENSNSUG00000016372 #37	ENSNSUG00000016371	C12orf29 (ENSNSUG00000016370)	C12orf50 (ENSNSUG00000016369)	ENSNSUG00000016368
Mainland tiger snake	MODERN SPECIES	136				ENSNSUG00000018619	ENSNSUG00000018620	ITIH4 (ENSNSUG00000018621)	MUSTN1 (ENSNSUG00000018622)	STIMATE (ENSNSUG00000018623)	SFMBT1 (ENSNSUG00000018624)	ENSNSUG00000018625	RFT1 (ENSNSUG00000018626)	PRKCD (ENSNSUG00000018629)	PFKFB4 (ENSNSUG00000018631)	ENSNSUG00000018704	ATRIP (ENSNSUG00000018705)	ENSNSUG00000018706 #22	IPPK (ENSNSUG00000018708)	ENSNSUG00000018714	ECM2 (ENSNSUG00000018717)	ASPN (ENSNSUG00000018721)	OMD (ENSNSUG00000018771)	OGN (ENSNSUG00000018772)	ENSNSUG00000018773	IARS1 (ENSNSUG00000018775)	ENSNSUG00000018803	SLC6A11 (ENSNSUG00000018816)	SLC6A1 (ENSNSUG00000018829)	HRH1 (ENSNSUG00000018870)	ATG7 (ENSNSUG00000018871)	VGLL4 (ENSNSUG00000019023)	TAMM41 (ENSNSUG00000019024)
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	6	USP44 (ENSNNAG00000003513)	METAP2 (ENSNNAG00000003500)	VEZT (ENSNNAG00000003481)	FGD6 (ENSNNAG00000003376)	NR2C1 (ENSNNAG00000003336)	NDUFA12 (ENSNNAG00000003312) #7	TMCC3 (ENSNNAG00000003294) #8	CEP83 (ENSNNAG00000003265) #9	ENSNNAG00000003260 #10	CRADD (ENSNNAG00000003251) #12	SOCS2 (ENSNNAG00000003247) #13	MRPL42 (ENSNNAG00000003233) #14	UBE2N (ENSNNAG00000003216) ##15	ENSNNAG00000003206 #16	EEA1 (ENSNNAG00000016475) #19	BTG1 (ENSNNAG00000016406) #22	DCN (ENSNNAG00000016402) #25	LUM (ENSNNAG00000016398) #26	KERA (ENSNNAG00000016394) #27	ATP2B1 (ENSNNAG00000013374) #31	POC1B (ENSNNAG00000013181) #32	DUSP6 (ENSNNAG00000013148) #33	ENSNNAG00000013116 #35	ENSNNAG00000013086 #36	ENSNNAG00000013011 #37	ENSNNAG00000012999 #37	C12orf29 (ENSNNAG00000012986)	C12orf50 (ENSNNAG00000012961)	MGAT4C (ENSNNAG00000012939)	NTS (ENSNNAG00000012925)	RASSF9 (ENSNNAG00000012912)
Indian cobra	MODERN SPECIES	1	GLT8D1 (ENSNNAG00000001634)	SPCS1 (ENSNNAG00000001626)	NEK4 (ENSNNAG00000001606)	ENSNNAG00000001510	ENSNNAG00000001336	ENSNNAG00000001124	ENSNNAG00000000907	MUSTN1 (ENSNNAG00000000866)	STIMATE (ENSNNAG00000000850)	SFMBT1 (ENSNNAG00000000823)	RFT1 (ENSNNAG00000000765)	PRKCD (ENSNNAG00000000681)	ENSNNAG00000000648	ENSNNAG00000000624	ATRIP (ENSNNAG00000000598)	ENSNNAG00000000583 #22	IPPK (ENSNNAG00000000561)	ENSNNAG00000000553	ENSNNAG00000000545	ASPN (ENSNNAG00000000503)	OMD (ENSNNAG00000000472)	OGN (ENSNNAG00000000453)	ENSNNAG00000000435	IARS1 (ENSNNAG00000018371)	ENSNNAG00000018337	ATP2B2 (ENSNNAG00000018213)	SLC6A11 (ENSNNAG00000018147)	SLC6A1 (ENSNNAG00000018109)	HRH1 (ENSNNAG00000018100)	ATG7 (ENSNNAG00000018034)	VGLL4 (ENSNNAG00000018012)
tuatara	DUPLICATION
tuatara	MODERN SPECIES	283	FGD6 (ENSSPUG00000014798)	NR2C1 (ENSSPUG00000014843)	NDUFA12 (ENSSPUG00000014857) #7	TMCC3 (ENSSPUG00000014866) #8	CEP83 (ENSSPUG00000014876) #9	PLXNC1 (ENSSPUG00000014908) #10	ENSSPUG00000014992 #12	SOCS2 (ENSSPUG00000015005) #13	ENSSPUG00000015009 #14	UBE2N (ENSSPUG00000015015) #15	ENSSPUG00000015022 #16	ENSSPUG00000015030 #16	EEA1 (ENSSPUG00000015064) #19	PLEKHG7 (ENSSPUG00000015212) #20	ENSSPUG00000015220	BTG1 (ENSSPUG00000015226) #22
tuatara	MODERN SPECIES	1425	GNL3 (ENSSPUG00000003582)	GLT8D1 (ENSSPUG00000003573)	SPCS1 (ENSSPUG00000003558)	ENSSPUG00000003548	NEK4 (ENSSPUG00000003533)	ITIH3 (ENSSPUG00000003431)	ITIH4 (ENSSPUG00000003109)	MUSTN1 (ENSSPUG00000003063)	STIMATE (ENSSPUG00000003060)	SFMBT1 (ENSSPUG00000003049)	RFT1 (ENSSPUG00000003032)	PRKCD (ENSSPUG00000003027)	ENSSPUG00000003012	SHISA5 (ENSSPUG00000002999)	ATRIP (ENSSPUG00000002964)	ENSSPUG00000002933 #22	IPPK (ENSSPUG00000002895)	ENSSPUG00000002880	ECM2 (ENSSPUG00000002830)	ASPN (ENSSPUG00000002808)	OGN (ENSSPUG00000002755)	NOL8 (ENSSPUG00000002744)	IARS1 (ENSSPUG00000002467)	ENSSPUG00000002344	SLC6A11 (ENSSPUG00000002142)	SLC6A1 (ENSSPUG00000002108)	HRH1 (ENSSPUG00000002084)	ATG7 (ENSSPUG00000002050)	VGLL4 (ENSSPUG00000002043)
Anura	ANCESTRAL SPECIES	20	ENSGT00510000046773.a.b.b	ENSGT00390000013198	ENSGT00510000048963.v	ENSGT00510000048561	ENSGT00940000159653	ENSGT00870000136549	ENSGT01050000244893.c.a.b	ENSGT00390000002667	ENSGT00940000153920.a.b	ENSGT00940000153920.b	ENSGT00940000157363	ENSGT00390000011390	ENSGT00940000155327.l	ENSGT00950000182835.c.d	ENSGT00390000012850	ENSGT00950000182952.C #22	ENSGT00390000010053	ENSGT00390000011897	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000154527.b	ENSGT00390000016970	ENSGT00390000000631	ENSGT00390000005780.b	ENSGT00730000111639
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	6	KITLG (ENSLLEG00000026218) #35	ENSLLEG00000026356	ENSLLEG00000026407	ENSLLEG00000026433	ENSLLEG00000026535	DUSP6 (ENSLLEG00000026572) #33	POC1B (ENSLLEG00000026630) #32	ATP2B1 (ENSLLEG00000026857) #31	ENSLLEG00000027527	ENSLLEG00000027539	EPYC (ENSLLEG00000014406) #28	KERA (ENSLLEG00000014468) #27	LUM (ENSLLEG00000014513) #26	DCN (ENSLLEG00000014552) #25	ENSLLEG00000014663	BTG1 (ENSLLEG00000014938) #22	ENSLLEG00000014972	PLEKHG7 (ENSLLEG00000015029) #20	EEA1 (ENSLLEG00000015422) #19	ENSLLEG00000016020	ENSLLEG00000016068 #16	ENSLLEG00000016216	ENSLLEG00000016265 ##15	MRPL42 (ENSLLEG00000016428) #14	SOCS2 (ENSLLEG00000016504) #13	PLXNC1 (ENSLLEG00000016700) #10	CEP83 (ENSLLEG00000017531) #9	TMCC3 (ENSLLEG00000017981) #8	ENSLLEG00000018083	ENSLLEG00000018104	NDUFA12 (ENSLLEG00000018131) #7
Leishan spiny toad	MODERN SPECIES	11	ENSLLEG00000027285	EIF3D (ENSLLEG00000027319)	MUSTN1 (ENSLLEG00000027402)	STIMATE (ENSLLEG00000027446)	SFMBT1 (ENSLLEG00000027488)	ENSLLEG00000027561	RFT1 (ENSLLEG00000027591)	ENSLLEG00000027809	ENSLLEG00000027821	PRKCD (ENSLLEG00000027855)	ENSLLEG00000028017	PFKFB4 (ENSLLEG00000028049)	ENSLLEG00000028192	ENSLLEG00000028214	ENSLLEG00000028234	ENSLLEG00000028328 #22	BRF2 (ENSLLEG00000028348)	ENSLLEG00000028372	IPPK (ENSLLEG00000028403)	ENSLLEG00000028466	ECM2 (ENSLLEG00000028486)	ASPN (ENSLLEG00000028513)	ENSLLEG00000028543	OMD (ENSLLEG00000028574)	OGN (ENSLLEG00000028592)	NOL8 (ENSLLEG00000015042)	ENSLLEG00000015170	IARS1 (ENSLLEG00000015265)	ENSLLEG00000016055	ENSLLEG00000016108	CDK10 (ENSLLEG00000016666)
Frog	DUPLICATION
Frog	MODERN SPECIES	3	cep290 (ENSXETG00000011742) #37	tmtc3 (ENSXETG00000011736) #36	kitlg (ENSXETG00000011735) #35	ENSXETG00000040055	dusp6 (ENSXETG00000021871) #33	poc1b (ENSXETG00000021865) #32	ENSXETG00000048658	atp2b1 (ENSXETG00000021855) #31	ENSXETG00000042462	ENSXETG00000048367	epyc (ENSXETG00000025480) #28	kera (ENSXETG00000025479) #27	lum (ENSXETG00000025478) #26	dcn (ENSXETG00000021847) #25	XB5884180 [provisional] (ENSXETG00000031372)	btg1 (ENSXETG00000026594) #22	plekhg7 (ENSXETG00000015233) #20	ENSXETG00000041553	eea1 (ENSXETG00000015235) #19	nudt4 (ENSXETG00000026585) #16	ube2n (ENSXETG00000011697) ##15	ENSXETG00000046283	mrpl42 (ENSXETG00000032902)	angpt4 (ENSXETG00000023814)	angpt4.2 (ENSXETG00000023813)	socs2 (ENSXETG00000042155) #13	ENSXETG00000036097 #10	ENSXETG00000045738 ##10	cep83 (ENSXETG00000023829) #9	tmcc3 (ENSXETG00000023832) #8	ndufa12 (ENSXETG00000023839) #7
Frog	MODERN SPECIES	4	cacng2 (ENSXETG00000031321)	ENSXETG00000042446	eif3d (ENSXETG00000027259)	mustn1 (ENSXETG00000031223)	stimate (ENSXETG00000009368)	sfmbt1 (ENSXETG00000032066)	rft1 (ENSXETG00000031244)	ENSXETG00000042027	prkcd (ENSXETG00000009359)	ENSXETG00000047814	pfkfb4 (ENSXETG00000009362)	wasll (ENSXETG00000031035)	ENSXETG00000047293	ENSXETG00000027255	atrip (ENSXETG00000020928)	mgc75753 (ENSXETG00000027249) #22	ippk (ENSXETG00000047469)	cenpp (ENSXETG00000036243)	aspn (ENSXETG00000027246)	omd (ENSXETG00000040260)	ogn (ENSXETG00000027245)	nol8 (ENSXETG00000020913)	ENSXETG00000034049	iars1 (ENSXETG00000020903)	atp2b4 (ENSXETG00000003618)	fancd2 (ENSXETG00000003617)	fancd2os (ENSXETG00000005485)	emc3 (ENSXETG00000005484)	ENSXETG00000042324	ENSXETG00000035595	ENSXETG00000033803
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	1434														STAB2 (ENSLACG00000010708)	ENSLACG00000010108	BTG1 (ENSLACG00000007426) #22
Coelacanth	MODERN SPECIES	230	EMC3 (ENSLACG00000018410)	tlr9 (ENSLACG00000018420)	ENSLACG00000018426	WDR82 (ENSLACG00000018445)	PPM1M (ENSLACG00000018487)	NT5DC2 (ENSLACG00000018520)	ENSLACG00000018550	NISCH (ENSLACG00000018599)	tnnc1a (ENSLACG00000018616)	rpl29 (ENSLACG00000018622)	DUSP7 (ENSLACG00000018752)	POC1A (ENSLACG00000018788)	ALAS1 (ENSLACG00000018803)	SHISA5 (ENSLACG00000018821)	ATRIP (ENSLACG00000018824)	si:dkey-42i9.4 (ENSLACG00000018830) #22	IPPK (ENSLACG00000018837)	ECM2 (ENSLACG00000018857)	ASPN (ENSLACG00000018869)	OMD (ENSLACG00000018880)	OGN (ENSLACG00000018887)	NOL8 (ENSLACG00000018898)	ENSLACG00000018911	IARS1 (ENSLACG00000018913)	ENSLACG00000018965	SLC6A11 (ENSLACG00000018991)	SLC6A1 (ENSLACG00000019011)
Actinopterygii	ANCESTRAL SPECIES	17	ENSGT00940000165155	ENSGT00950000183042.a.b.a	ENSGT00940000159167	ENSGT00940000160180	ENSGT00940000154917	ENSGT00940000160733	ENSGT00940000164702	ENSGT00940000158078	ENSGT00390000000987	ENSGT00390000007685	ENSGT01020000230401.b.a	ENSGT00530000064216	ENSGT00940000158637	ENSGT00940000156566	ENSGT00940000166455	ENSGT00950000182952.C #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000154527.a.a.b	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00950000182953.B.b	ENSGT00390000018272 #35	ENSGT00940000157538.f #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00940000155352
Reedfish	MODERN SPECIES		nopchap1 (ENSECRG00000000549)	SLC41A2 (ENSECRG00000000482)	ENSECRG00000000450	ENSECRG00000000435	chst11 (ENSECRG00000011068)	TXNRD1 (ENSECRG00000011057)	nfyba (ENSECRG00000011046)	hcfc2 (ENSECRG00000011036)	glt8d2 (ENSECRG00000011025)	tdg.1 (ENSECRG00000011014)	ENSECRG00000011007	uqcc6 (ENSECRG00000010999)	hsp90b1 (ENSECRG00000010939)	NT5DC3 (ENSECRG00000010913)	stab2 (ENSECRG00000010864)	btg1 (ENSECRG00000010852) #22	ENSECRG00000010849	dcn (ENSECRG00000010845) #25	lum (ENSECRG00000010842) #26	ENSECRG00000010839	kera (ENSECRG00000010837) #27	EPYC (ENSECRG00000010832) #28	ENSECRG00000010797	POC1B (ENSECRG00000010758) #32	dusp6 (ENSECRG00000010741) #33	ENSECRG00000010730	ENSECRG00000010722	ENSECRG00000010683 #35	ENSECRG00000010650 #36	ENSECRG00000010644	cep290 (ENSECRG00000010633) #37
Neopterygii	ANCESTRAL SPECIES	21	ENSGT00950000183042.a.b.a	ENSGT00940000159167	ENSGT00940000160180	ENSGT00940000154917	ENSGT00940000160733	ENSGT00940000164702.a	ENSGT00940000158078	ENSGT00390000000987	ENSGT00390000007685	ENSGT01020000230401.b.a	ENSGT00530000064216	ENSGT00940000158637	ENSGT00940000156566	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000158686 #31	ENSGT00940000154527.a.a.b	ENSGT00940000160413 #32	ENSGT00940000158342.b #33	ENSGT00950000182953.B.b	ENSGT00390000018272 #35	ENSGT00940000157538.f #36	ENSGT00730000111039.C #37	ENSGT00500000044938	ENSGT00940000155352
Spotted gar	MODERN SPECIES	674	scube1 (ENSLOCG00000015066)	samm50 (ENSLOCG00000015060)	WASHC4 (ENSLOCG00000015056)	ALDH1L2 (ENSLOCG00000015053)	nopchap1 (ENSLOCG00000015052)	SLC41A2 (ENSLOCG00000015043)	chst11 (ENSLOCG00000015041)	nfyba (ENSLOCG00000015038)	hcfc2 (ENSLOCG00000015033)	glt8d2 (ENSLOCG00000015027)	tdg.1 (ENSLOCG00000015025)	hsp90b1 (ENSLOCG00000015012)	ENSLOCG00000015011	NT5DC3 (ENSLOCG00000015006)	stab2 (ENSLOCG00000015003)	btg1 (ENSLOCG00000015002) #22
Osteoglossocephalai	ANCESTRAL SPECIES	43					ENSGT01010000222336.b.a.b.a	ENSGT00940000156003	ENSGT00550000074844	ENSGT00940000155529.A	ENSGT00940000155529.C	ENSGT01070000253775.a.d.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00510000047522	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00940000170238	ENSGT00950000182952.C #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00640000091774	ENSGT00940000154527.a.a.b.a	ENSGT00510000047602	ENSGT00390000016313.a.a	ENSGT00940000160568	ENSGT01030000234814	ENSGT00940000153769.E	ENSGT00730000114050	ENSGT00940000155126.t	ENSGT00390000002915	ENSGT00940000157992
Osteoglossiformes	ANCESTRAL SPECIES	57	ENSGT00390000003282.B.f	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500.k	ENSGT00550000074921	ENSGT00940000153541.D	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000156030.j	ENSGT00990000210069	ENSGT00940000166455	ENSGT00950000183004.a.b.a.a.p	ENSGT00950000182952.C #22	ENSGT00390000010053.k	ENSGT00390000011897	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000157238.a	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928.h	ENSGT00390000013390	ENSGT00940000157869.e.b	ENSGT00940000155146.u	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	261															fam3c (ENSPKIG00000005028)	btg1 (ENSPKIG00000005055) #22	ENSPKIG00000005069	dcn (ENSPKIG00000005086) #25	lum (ENSPKIG00000005122) #26	kera (ENSPKIG00000005157) #27	epyc (ENSPKIG00000005185) #28	si:dkeyp-38g8.5 (ENSPKIG00000005205)	ENSPKIG00000005274	mest (ENSPKIG00000005413)	ucn3l (ENSPKIG00000005440)	ENSPKIG00000005453	ENSPKIG00000005475	slc35b4 (ENSPKIG00000005507)	LRGUK (ENSPKIG00000005557)	exoc4 (ENSPKIG00000005678)	plxna4 (ENSPKIG00000005741)
P. kingsleyae	MODERN SPECIES	60	tamm41 (ENSPKIG00000024860)	vgll4b (ENSPKIG00000024872)	ATG7 (ENSPKIG00000024886)	HRH1 (ENSPKIG00000024898)	slc6a1b (ENSPKIG00000024901)	SLC6A11 (ENSPKIG00000024908)	atp2b2 (ENSPKIG00000024938)	ENSPKIG00000024988	iars1 (ENSPKIG00000025011)	tnnc1a (ENSPKIG00000025038)	rpl29 (ENSPKIG00000025048)	dusp7 (ENSPKIG00000025059)	POC1A (ENSPKIG00000025072)	alas1 (ENSPKIG00000025086)	atrip (ENSPKIG00000025096)	si:dkey-42i9.4 (ENSPKIG00000025101) #22	ippk (ENSPKIG00000025106)	cenpp (ENSPKIG00000025115)	ECM2 (ENSPKIG00000025120)	aspn (ENSPKIG00000025130)	ogna (ENSPKIG00000025138)	nol8 (ENSPKIG00000025150)	ENSPKIG00000025168	NISCH (ENSPKIG00000025174)	stab1 (ENSPKIG00000025195)	UQCC5 (ENSPKIG00000025238)	ccdc71 (ENSPKIG00000025241)	ENSPKIG00000025243	kctd6a (ENSPKIG00000025245)	pdhb (ENSPKIG00000025249)	pxk (ENSPKIG00000025263)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	11	apaf1 (ENSSFOG00015000841)	anks1b (ENSSFOG00015000686)	uhrf1bp1l (ENSSFOG00015000671)	IKBIP (ENSSFOG00015000593)	arfgap3 (ENSSFOG00015000529)	pacsin2 (ENSSFOG00015000469)	mcat (ENSSFOG00015000457)	ENSSFOG00015026922	ENSSFOG00015000409	slc26a4 (ENSSFOG00015000396)	slc26a3.1 (ENSSFOG00015000298)	cbll1 (ENSSFOG00015000266)	ENSSFOG00015000257	fam3c (ENSSFOG00015000202)	ENSSFOG00015027481	btg1 (ENSSFOG00015032577) #22	ENSSFOG00015000127	dcn (ENSSFOG00015023966) #25	lum (ENSSFOG00015023962) #26	kera (ENSSFOG00015023956) #27	epyc (ENSSFOG00015023949) #28	ENSSFOG00015023939	mest (ENSSFOG00015023934)	ucn3l (ENSSFOG00015023931)	ENSSFOG00015023929	ENSSFOG00015023923	slc35b4 (ENSSFOG00015023918)	LRGUK (ENSSFOG00015023914)	exoc4 (ENSSFOG00015023908)	ENSSFOG00015023905	plxna4 (ENSSFOG00015023898)
Asian bonytongue	MODERN SPECIES	14	tamm41 (ENSSFOG00015001457)	vgll4b (ENSSFOG00015027191)	ATG7 (ENSSFOG00015001550)	HRH1 (ENSSFOG00015001587)	slc6a1b (ENSSFOG00015001593)	SLC6A11 (ENSSFOG00015001655)	atp2b2 (ENSSFOG00015001733)	iars1 (ENSSFOG00015001874)	ENSSFOG00015002049	rpl29 (ENSSFOG00015027961)	dusp7 (ENSSFOG00015002096)	POC1A (ENSSFOG00015002118)	alas1 (ENSSFOG00015002174)	ENSSFOG00015002224	atrip (ENSSFOG00015002244)	si:dkey-42i9.4 (ENSSFOG00015002276) #22	ippk (ENSSFOG00015002296)	ECM2 (ENSSFOG00015002312)	aspn (ENSSFOG00015002340)	ogna (ENSSFOG00015002375)	cenpp (ENSSFOG00015002304)	nol8 (ENSSFOG00015002403)	ENSSFOG00015002429	NISCH (ENSSFOG00015002444)	ccdc71 (ENSSFOG00015002730)	kctd6a (ENSSFOG00015032742)	pdhb (ENSSFOG00015002762)	pxk (ENSSFOG00015002800)	HTD2 (ENSSFOG00015002869)	rpp14 (ENSSFOG00015002893)	ABHD6 (ENSSFOG00015002956)
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	436																ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b	ENSGT00390000013390	ENSGT00940000155306.a	ENSGT00940000157869.e.b	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000167624
Otomorpha	ANCESTRAL SPECIES	103	ENSGT00940000159748	ENSGT00940000161969	ENSGT00940000153541.B	ENSGT00940000164248.b.b	ENSGT00940000155311.C.c	ENSGT00940000158549	ENSGT00390000001092	ENSGT00940000155445	ENSGT00940000165254.c.a	ENSGT00390000003937	ENSGT00940000158219.a	ENSGT00510000050141.b	ENSGT00940000153588.b	ENSGT00390000003897	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b	ENSGT00390000013390	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000167624	ENSGT00940000158156.b.a.b	ENSGT00940000154280	ENSGT00940000156550.b	ENSGT00530000063735.a.a	ENSGT00950000183146.b.a
Otophysi	ANCESTRAL SPECIES	2	ENSGT00940000159748	ENSGT00940000161969	ENSGT00940000153541.B	ENSGT00940000164248.b.b	ENSGT00940000155311.C.c	ENSGT00940000158549	ENSGT00390000001092	ENSGT00940000155445	ENSGT00940000165254.c.a	ENSGT00390000003937	ENSGT00940000158219.a	ENSGT00510000050141.b	ENSGT00940000153588.b	ENSGT00390000003897	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b	ENSGT00390000013390	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000167624	ENSGT00940000158156.b.a.b	ENSGT00940000154280	ENSGT00940000156550.b	ENSGT00530000063735.a.a	ENSGT00950000183146.b.a	ENSGT00940000167423	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000156616.j	ENSGT00940000158431.a.b
Characiphysae	ANCESTRAL SPECIES	5	ENSGT00940000159748	ENSGT00940000161969	ENSGT00940000153541.B	ENSGT00940000164248.b.b	ENSGT00940000155311.C.c	ENSGT00940000158549	ENSGT00390000001092	ENSGT00940000155445	ENSGT00940000165254.c.a	ENSGT00390000003937	ENSGT00940000158219.a	ENSGT00510000050141.b	ENSGT00940000153588.b	ENSGT00390000003897	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b	ENSGT00390000013390	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000167624	ENSGT00940000158156.b.a.b	ENSGT00940000154280	ENSGT00940000156550.b	ENSGT00530000063735.a.a	ENSGT00950000183146.b.a	ENSGT00940000167423	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000156616.j	ENSGT00940000161131.a.a
Characiphysae_b	ANCESTRAL SPECIES	8	ENSGT00940000159748	ENSGT00940000161969	ENSGT00940000153541.B	ENSGT00940000164248.b.b	ENSGT00940000155311.C.c	ENSGT00940000158549	ENSGT00390000001092	ENSGT00940000155445	ENSGT00940000165254.c.a	ENSGT00390000003937	ENSGT00940000158219.a	ENSGT00510000050141.b	ENSGT00940000153588.b	ENSGT00390000003897	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b	ENSGT00390000013390	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT01000000221052	ENSGT00940000167624	ENSGT00940000158156.b.a.b	ENSGT00940000154280	ENSGT00940000156550.b	ENSGT00530000063735.a.a	ENSGT00950000183146.b.a	ENSGT00940000167423	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000156616.j
Characoidei	ANCESTRAL SPECIES	8	ENSGT00940000159748	ENSGT00940000161969	ENSGT00940000153541.B	ENSGT00940000164248.b.b	ENSGT00940000155311.C.c	ENSGT00940000158549	ENSGT00390000001092	ENSGT00940000155445	ENSGT00940000165254.c.a	ENSGT00390000003937	ENSGT00940000158219.a	ENSGT00510000050141.b	ENSGT00940000153588.b	ENSGT00390000003897	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b	ENSGT00390000013390	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000167624	ENSGT00940000158156.b.a.b	ENSGT00940000154280	ENSGT00940000156550.b	ENSGT00530000063735.a.a	ENSGT00950000183146.b.a	ENSGT00940000167423	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000156616.j	ENSGT00940000161131.a.a
Red-bellied piranha	MODERN SPECIES	205					bgnb (ENSPNAG00000014827)	B4GALT3 (ENSPNAG00000003264)	cfap126 (ENSPNAG00000014785)	ccnq (ENSPNAG00000014773)	atp2b3b (ENSPNAG00000003240)	ENSPNAG00000014576	ENSPNAG00000014563	ENSPNAG00000014540	FLNA (ENSPNAG00000014526)	dnase1l1 (ENSPNAG00000004950)	rpl10 (ENSPNAG00000014427)	ENSPNAG00000014383 #22	ognb (ENSPNAG00000003094)	UQCC5 (ENSPNAG00000003049)	kctd6b (ENSPNAG00000014210)	abhd6b (ENSPNAG00000014191)	ENSPNAG00000007109	slmapb (ENSPNAG00000014059)	atp6ap1lb (ENSPNAG00000014011)	DNAH12 (ENSPNAG00000013990)	ASB14 (ENSPNAG00000002951)	ENSPNAG00000002944	AMIGO3 (ENSPNAG00000013698)	ENSPNAG00000002890	guca1b (ENSPNAG00000013671)	oard1 (ENSPNAG00000013664)	apobec2b (ENSPNAG00000013666)
Mexicana tetra	MODERN SPECIES	6	tktb (ENSAMXG00000013176)	ENSAMXG00000013221	tnnc1b (ENSAMXG00000013191)	bgnb (ENSAMXG00000013240)	B4GALT3 (ENSAMXG00000013257)	cfap126 (ENSAMXG00000013275)	ccnq (ENSAMXG00000033281)	atp2b3b (ENSAMXG00000013300)	ENSAMXG00000043619	ENSAMXG00000013402	emd (ENSAMXG00000033874)	FLNA (ENSAMXG00000013411)	rpl10 (ENSAMXG00000030047)	ENSAMXG00000037190	dnase1l1 (ENSAMXG00000043674)	ENSAMXG00000013441 #22	ognb (ENSAMXG00000043851)	UQCC5 (ENSAMXG00000037262)	kctd6b (ENSAMXG00000013565)	abhd6b (ENSAMXG00000043412)	ENSAMXG00000013661	slmapb (ENSAMXG00000013746)	ENSAMXG00000041700	atp6ap1lb (ENSAMXG00000036282)	ENSAMXG00000039356	DNAH12 (ENSAMXG00000014371)	ASB14 (ENSAMXG00000015403)	ENSAMXG00000015505	ENSAMXG00000033193	ENSAMXG00000015824	guca1b (ENSAMXG00000041592)
Electric eel	MODERN SPECIES	27	USP19 (ENSEEEG00000006854)	ENSEEEG00000006843	lrrc23 (ENSEEEG00000006839)	tktb (ENSEEEG00000006770)	tnnc1b (ENSEEEG00000006742)	ENSEEEG00000006741	bgnb (ENSEEEG00000006739)	B4GALT3 (ENSEEEG00000006738)	cfap126 (ENSEEEG00000006737)	ccnq (ENSEEEG00000006736)	atp2b3b (ENSEEEG00000006571)	ENSEEEG00000006567	emd (ENSEEEG00000006566)	rpl10 (ENSEEEG00000006045)	dnase1l1 (ENSEEEG00000006037)	ENSEEEG00000006035 #22	ognb (ENSEEEG00000006034)	ENSEEEG00000006033	kctd6b (ENSEEEG00000006032)	ENSEEEG00000006027	slmapb (ENSEEEG00000006009)	atp6ap1lb (ENSEEEG00000006008)	ENSEEEG00000006005	ENSEEEG00000006002	ENSEEEG00000005995	ASB14 (ENSEEEG00000005992)	ENSEEEG00000005986	AMIGO3 (ENSEEEG00000005980)	ENSEEEG00000005963	guca1b (ENSEEEG00000005953)	oard1 (ENSEEEG00000005950)
Cyprinoidei	ANCESTRAL SPECIES		ENSGT00940000159748	ENSGT00940000161969	ENSGT00940000153541.B	ENSGT00940000164248.b.b	ENSGT00940000155311.C.c	ENSGT00940000158549	ENSGT00390000001092	ENSGT00940000155445	ENSGT00940000165254.c.a	ENSGT00390000003937	ENSGT00940000158219.a	ENSGT00510000050141.b	ENSGT00940000153588.b	ENSGT00390000003897	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b	ENSGT00390000013390	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000156286.h	ENSGT00940000167624	ENSGT00940000158156.b.a.b	ENSGT00940000154280	ENSGT00940000156550.b	ENSGT00530000063735.a.a	ENSGT00950000183146.b.a	ENSGT00940000167423	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000156616.j
Cyprininae	ANCESTRAL SPECIES	589								ENSGT00940000177826	ENSGT00940000155445.p	ENSGT00940000165254.c.a.b	ENSGT00940000158219.a.e	ENSGT00510000050141.b	ENSGT00940000153588.b.d.a	ENSGT00390000003897.r.a	ENSGT00950000182846.a.a.a.a.a.a.e	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b.b	ENSGT00390000013390.h	ENSGT00940000157869.e.a.b	ENSGT00510000047225.b.c	ENSGT00940000156286.h	ENSGT00940000167624.a	ENSGT00940000158156.b.a.b.b	ENSGT00940000156550.b.d	ENSGT00530000063735.a.a.f
Cyprininae_a	ANCESTRAL SPECIES	478									ENSGT00940000177826	ENSGT00940000155445.p	ENSGT00940000165254.c.a.b	ENSGT00940000158219.a.e	ENSGT00940000153588.b.d.a	ENSGT00390000003897.q	ENSGT00950000182846.a.a.a.a.a.a.e	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b.b	ENSGT00390000013390.h	ENSGT00940000157869.e.a.b	ENSGT00510000047225.b.c	ENSGT00940000156286.h	ENSGT00940000167624.a	ENSGT00940000158156.b.a.b.b	ENSGT00940000156550.b.d	ENSGT00530000063735.a.a.f
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	745						bgnb (ENSSGRG00000027608)	B4GALT3 (ENSSGRG00000027607)	ENSSGRG00000027606	ccnq (ENSSGRG00000027605)	atp2b3b (ENSSGRG00000026312)	ENSSGRG00000026295	emd (ENSSGRG00000026293)	FLNA (ENSSGRG00000025295)	rpl10 (ENSSGRG00000025172)	dnase1l1 (ENSSGRG00000025170)	ENSSGRG00000025168 #22	ognb (ENSSGRG00000025167)	UQCC5 (ENSSGRG00000025166)	ENSSGRG00000025165	kctd6b (ENSSGRG00000025164)	abhd6b (ENSSGRG00000025162)	ENSSGRG00000025096	ENSSGRG00000025094	slmapb (ENSSGRG00000025085)	atp6ap1lb (ENSSGRG00000025084)	DNAH12 (ENSSGRG00000025083)	ASB14 (ENSSGRG00000025082)	ENSSGRG00000025080	AMIGO3 (ENSSGRG00000025079)	ENSSGRG00000025078	guca1b (ENSSGRG00000025074)
Golden-line barbel	MODERN SPECIES	1431											stx3b (ENSSGRG00000026976)	emd (ENSSGRG00000026973)	FLNA (ENSSGRG00000022657)	rpl10 (ENSSGRG00000022509)	dnase1l1 (ENSSGRG00000022503)	ENSSGRG00000022502 #22	ognb (ENSSGRG00000022501)	ENSSGRG00000022500	kctd6b (ENSSGRG00000022499)	abhd6b (ENSSGRG00000022498)	slmapb (ENSSGRG00000022497)	atp6ap1lb (ENSSGRG00000022496)	ASB14 (ENSSGRG00000022492)	ASB14 (ENSSGRG00000022490)	ENSSGRG00000022489	AMIGO3 (ENSSGRG00000022487)
Goldfish	MODERN SPECIES	1522	USP19 (ENSCARG00000051888)	ENSCARG00000051631	lrrc23 (ENSCARG00000051498)	tktb (ENSCARG00000050352)	tnnc1b (ENSCARG00000050269)	bgnb (ENSCARG00000050188)	B4GALT3 (ENSCARG00000050153)	cfap126 (ENSCARG00000050124)	ccnq (ENSCARG00000050111)	atp2b3b (ENSCARG00000042861)	ENSCARG00000042631	ENSCARG00000042587	FLNA (ENSCARG00000041697)	rpl10 (ENSCARG00000041619)	dnase1l1 (ENSCARG00000041607)	ENSCARG00000041602 #22	ognb (ENSCARG00000041586)	UQCC5 (ENSCARG00000041568)	kctd6b (ENSCARG00000041562)	abhd6b (ENSCARG00000041514)	ENSCARG00000041475	slmapb (ENSCARG00000041378)	atp6ap1lb (ENSCARG00000041353)	ENSCARG00000041162	AMIGO3 (ENSCARG00000041152)	ENSCARG00000041142	guca1b (ENSCARG00000041110)	oard1 (ENSCARG00000040949)	apobec2b (ENSCARG00000040921)	ENSCARG00000040908	ENSCARG00000040884
Clupeiformes	ANCESTRAL SPECIES	103	ENSGT00940000159748	ENSGT00940000161969	ENSGT00940000153541.B	ENSGT00940000164248.b.b	ENSGT00940000155311.C.c	ENSGT00940000158549	ENSGT00390000001092	ENSGT00940000155445	ENSGT00940000165254.c.a	ENSGT00390000003937	ENSGT00940000158219.a	ENSGT00510000050141.b	ENSGT00940000153588.b	ENSGT00390000003897	ENSGT00950000182846.a.a.a.a.a.a.g	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b	ENSGT00390000013390	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000167624	ENSGT00940000158156.b.a.b	ENSGT00940000154280	ENSGT00940000156550.b	ENSGT00530000063735.a.a	ENSGT00950000183146.b.a	ENSGT00940000163461.b	ENSGT00390000013764
Atlantic herring	MODERN SPECIES	20	RBM10 (ENSCHAG00000017390)	lrrc23 (ENSCHAG00000017271)	tktb (ENSCHAG00000016633)	tnnc1b (ENSCHAG00000016584)	bgnb (ENSCHAG00000016565)	B4GALT3 (ENSCHAG00000016537)	cfap126 (ENSCHAG00000016472)	ccnq (ENSCHAG00000016458)	atp2b3b (ENSCHAG00000015111)	ENSCHAG00000015047	ENSCHAG00000015036	emd (ENSCHAG00000015028)	FLNA (ENSCHAG00000010701)	rpl10 (ENSCHAG00000010458)	dnase1l1 (ENSCHAG00000010321)	ENSCHAG00000010307 #22	ognb (ENSCHAG00000010302)	ENSCHAG00000010277	kctd6b (ENSCHAG00000010250)	abhd6b (ENSCHAG00000010230)	slmapb (ENSCHAG00000010184)	atp6ap1lb (ENSCHAG00000010172)	DNAH12 (ENSCHAG00000006637)	ASB14 (ENSCHAG00000006505)	ENSCHAG00000006169	trpc4apb (ENSCHAG00000005024)	ENSCHAG00000004820	samhd1 (ENSCHAG00000002379)	samhd1 (ENSCHAG00000002266)	samhd1 (ENSCHAG00000001845)	gss (ENSCHAG00000000400)
Euteleosteomorpha	ANCESTRAL SPECIES	11	ENSGT00390000016228.b	ENSGT00940000153629.a.a.a	ENSGT01030000234549.a.a.a.a.a.b.b.a	ENSGT00940000155820.b	ENSGT00940000157898	ENSGT00390000015805.b	ENSGT00940000157007.i.a	ENSGT00940000157261.k.b	ENSGT00550000074865	ENSGT00940000170563	ENSGT00940000165387.a	ENSGT00950000182844.a.a.b	ENSGT00940000154468.tb.b.b	ENSGT00940000157106	ENSGT01090000260040.b.a.b.y.a	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b	ENSGT00390000013390	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000167624	ENSGT01030000234515.a.a.a.l	ENSGT01100000263573.b.b	ENSGT00940000161090.B.c.b.b.b	ENSGT00950000182846.a.a.b.b	ENSGT00940000166028	ENSGT00390000017131	ENSGT00940000154583.e.b	ENSGT00940000155615.i.b	ENSGT00940000158890	ENSGT00940000163873.c.a
Protacanthopterygii	ANCESTRAL SPECIES	37	ENSGT00390000016228.b	ENSGT00940000153629.a.a.a	ENSGT01030000234549.a.a.a.a.a.b.b.a.a	ENSGT00940000155820.b	ENSGT00940000157898	ENSGT00390000015805.b	ENSGT00940000157007.i.a	ENSGT00940000157261.k.b	ENSGT00550000074865	ENSGT00940000166133	ENSGT00940000165387.a	ENSGT00950000182844.a.a.b	ENSGT00940000154468.tb.b.b	ENSGT00940000157106	ENSGT01090000260040.b.a.b.y.a	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b	ENSGT00390000013390	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000167624	ENSGT01030000234515.a.a.a.l	ENSGT01100000263573.b.b	ENSGT00940000161090.B.c.b.b.b	ENSGT00390000017131	ENSGT00940000154583.e.b.a	ENSGT00940000155615.i.b	ENSGT00940000158890.g	ENSGT00940000163873.c.a	ENSGT00390000005874.i	ENSGT00940000155514.d
Salmoninae	ANCESTRAL SPECIES	160	ENSGT00940000155241.c	ENSGT00940000154814.b.oc	ENSGT00390000016228.b.a	ENSGT00940000153629.a.a.a.d	ENSGT01030000234549.a.a.a.a.a.b.b.a.a	ENSGT00940000155820.b.c	ENSGT00940000157898.j	ENSGT00390000015805.b.d	ENSGT00940000157007.i.a	ENSGT00940000157261.k.b.c	ENSGT00550000074865.j	ENSGT00940000165387.a.d	ENSGT00940000154468.tb.b.b.a	ENSGT00940000157106	ENSGT01090000260040.b.a.b.y.a.c	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b.e	ENSGT00390000013390	ENSGT00940000155306.a.o.a	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000156286.j	ENSGT00940000167624	ENSGT01030000234515.a.a.a.l	ENSGT01100000263573.b.b	ENSGT00940000161090.B.c.b.b.b	ENSGT00390000017131	ENSGT00940000154583.e.b.a.b	ENSGT00940000155615.i.b.c	ENSGT00940000158890.g.b	ENSGT00940000163873.c.a
Salmoninae_a	ANCESTRAL SPECIES	26	ENSGT00550000074972	ENSGT00940000155241.c	ENSGT00390000016228.b.a	ENSGT00940000153629.a.a.a.d	ENSGT01030000234549.a.a.a.a.a.b.b.a.a	ENSGT00940000155820.b.c	ENSGT00940000157898.j	ENSGT00390000015805.b.d	ENSGT00940000157007.i.a	ENSGT00940000157261.k.b.c	ENSGT00550000074865.j	ENSGT00940000165387.a.d	ENSGT00940000154468.tb.b.b.a	ENSGT00940000157106	ENSGT01090000260040.b.a.b.y.a.c	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b.e	ENSGT00390000013390	ENSGT00940000155306.a.o.a	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000156286.j	ENSGT00940000167624	ENSGT01030000234515.a.a.a.l	ENSGT01100000263573.b.b	ENSGT00940000161090.B.c.b.b.b	ENSGT00390000017131	ENSGT00940000154583.e.b.a.b	ENSGT00940000155615.i.b.c	ENSGT00940000158890.g.b	ENSGT00940000163873.c.a
Salmo	ANCESTRAL SPECIES	4	ENSGT00550000074972	ENSGT00940000155241.c.a	ENSGT00390000016228.b.a	ENSGT00940000153629.a.a.a.d	ENSGT01030000234549.a.a.a.a.a.b.b.a.a	ENSGT00940000155820.b.c	ENSGT00940000157898.j	ENSGT00390000015805.b.d	ENSGT00940000157007.i.a	ENSGT00940000157261.k.b.c	ENSGT00550000074865.j	ENSGT00940000165387.a.d	ENSGT00940000154468.tb.b.b.a	ENSGT00940000157106	ENSGT01090000260040.b.a.b.y.a.c	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b.e	ENSGT00390000013390	ENSGT00940000155306.a.o.a	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000156286.j	ENSGT00940000167624	ENSGT01030000234515.a.a.a.l	ENSGT01100000263573.b.b	ENSGT00940000161090.B.c.b.b.b	ENSGT00390000017131	ENSGT00940000154583.e.b.a.b	ENSGT00940000155615.i.b.c	ENSGT00940000158890.g.b	ENSGT00940000163873.c.a
River trout	MODERN SPECIES	23	ogg1 (ENSSTUG00000009971)	qars1 (ENSSTUG00000010084)	QRICH1 (ENSSTUG00000013207)	ENSSTUG00000013221	rho (ENSSTUG00000013243)	MAGI1 (ENSSTUG00000013270)	ren (ENSSTUG00000013416)	ENSSTUG00000013584	ENSSTUG00000013636	mapkapk2b (ENSSTUG00000013649)	eif2d (ENSSTUG00000013871)	ENSSTUG00000014014	rbm39b (ENSSTUG00000018124)	pabpc1l (ENSSTUG00000018308)	YWHAB (ENSSTUG00000018543)	ENSSTUG00000018700 #22	ognb (ENSSTUG00000018703)	UQCC5 (ENSSTUG00000018727)	ENSSTUG00000018730	kctd6b (ENSSTUG00000018735)	abhd6b (ENSSTUG00000018747)	ENSSTUG00000018762	slmapb (ENSSTUG00000018772)	cers5 (ENSSTUG00000018778)	ENSSTUG00000018812	ENSSTUG00000018834	ABTB1 (ENSSTUG00000018847)	ENSSTUG00000018906	grip2a (ENSSTUG00000019192)	rpl32 (ENSSTUG00000019892)	ssuh2rs1 (ENSSTUG00000019913)
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000078423	ENSSSAG00000078419	ENSSSAG00000122027	prickle2a (ENSSSAG00000078410)	ENSSSAG00000078406	ENSSSAG00000078255	ENSSSAG00000078153	ENSSSAG00000078129	ENSSSAG00000078124	mapkapk2b (ENSSSAG00000078059)	eif2d (ENSSSAG00000078013)	ENSSSAG00000071223	rbm39b (ENSSSAG00000070603)	ENSSSAG00000068975	ENSSSAG00000068584	BTG1 (ENSSSAG00000068577) #22	ognb (ENSSSAG00000068572)	smim4 (ENSSSAG00000068570)	ENSSSAG00000107860	kctd6b (ENSSSAG00000068564)	abhd6b (ENSSSAG00000068559)	slmapb (ENSSSAG00000068554)	ENSSSAG00000068533	ENSSSAG00000068523	ENSSSAG00000068520	ENSSSAG00000068433	slc6a6 (ENSSSAG00000068263)	grip2a (ENSSSAG00000056549)	ENSSSAG00000056402	ssuh2rs1 (ENSSSAG00000056396)	ENSSSAG00000049897
Oncorhynchus	ANCESTRAL SPECIES	7	ENSGT00640000091554	ENSGT00550000074972	ENSGT00940000155241.c	ENSGT00390000016228.b.a	ENSGT00940000153629.a.a.a.d	ENSGT01030000234549.a.a.a.a.a.b.b.a.a	ENSGT00940000155820.b.c	ENSGT00940000157898.j	ENSGT00390000015805.b.d	ENSGT00940000157261.k.b.c	ENSGT00550000074865.j	ENSGT00940000165387.a.d	ENSGT00940000154468.tb.b.b.a	ENSGT00940000157106	ENSGT01090000260040.b.a.b.y.a.c	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b.e	ENSGT00390000013390	ENSGT00940000155306.a.o.a	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000167624	ENSGT01030000234515.a.a.a.l	ENSGT01100000263573.b.b	ENSGT00940000161090.B.c.b.b.b	ENSGT00390000017131	ENSGT00940000154583.e.b.a.b	ENSGT00940000155615.i.b.c	ENSGT00940000158890.g.b	ENSGT00940000163873.c.a	ENSGT00390000005874.i.h
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000033900	qars1 (ENSOMYG00000033968)	ENSOMYG00000034441	ENSOMYG00000034465	prickle2a (ENSOMYG00000034488)	rho (ENSOMYG00000034515)	ENSOMYG00000034539	ENSOMYG00000034641	csf1-2 (ENSOMYG00000034839)	ENSOMYG00000034995	ENSOMYG00000049275	ENSOMYG00000036271	ENSOMYG00000036993	ENSOMYG00000037552	ENSOMYG00000037881	ENSOMYG00000038161 #22	ognb (ENSOMYG00000038166)	ENSOMYG00000038171	ENSOMYG00000038182	kctd6b (ENSOMYG00000038189)	abhd6b (ENSOMYG00000038205)	slmapb (ENSOMYG00000038216)	ENSOMYG00000038289	ENSOMYG00000038343	ENSOMYG00000038407	ENSOMYG00000038373	ENSOMYG00000019880	grip2a (ENSOMYG00000020151)	ENSOMYG00000020785	ssuh2rs1 (ENSOMYG00000020830)	ENSOMYG00000020987
Oncorhynchus_a	ANCESTRAL SPECIES	9	ENSGT00640000091554	ENSGT00550000074972	ENSGT00940000155241.c	ENSGT00390000016228.b.a	ENSGT00940000153629.a.a.a.d	ENSGT01030000234549.a.a.a.a.a.b.b.a.a	ENSGT00940000155820.b.c	ENSGT00940000157898.j	ENSGT00390000015805.b.d	ENSGT00940000157261.k.b.c	ENSGT00550000074865.j	ENSGT00940000165387.a.d	ENSGT00940000154468.tb.b.b.a	ENSGT00940000157106	ENSGT01090000260040.b.a.b.y.a.c	ENSGT00950000182952.C.g.a #22	ENSGT00940000157238.b.e	ENSGT00390000013390	ENSGT00940000155306.a.o.a	ENSGT00940000157869.e.a	ENSGT00510000047225.b	ENSGT00940000167624	ENSGT01030000234515.a.a.a.l	ENSGT01100000263573.b.b	ENSGT00940000161090.B.c.b.b.b	ENSGT00390000017131	ENSGT00940000154583.e.b.a.b	ENSGT00940000155615.i.b.c	ENSGT00940000158890.g.b	ENSGT00940000163873.c.a	ENSGT00390000005874.i.h
Chinook salmon	MODERN SPECIES	14	ogg1 (ENSOTSG00005033170)	qars1 (ENSOTSG00005033175)	QRICH1 (ENSOTSG00005036390)	ENSOTSG00005036393	prickle2a (ENSOTSG00005036394)	rho (ENSOTSG00005036395)	MAGI1 (ENSOTSG00005036397)	ren (ENSOTSG00005036679)	ENSOTSG00005037103	mapkapk2b (ENSOTSG00005037107)	ENSOTSG00005037110	ENSOTSG00005037142	rbm39b (ENSOTSG00005044319)	pabpc1l (ENSOTSG00005044378)	YWHAB (ENSOTSG00005044379)	ENSOTSG00005044381 #22	ognb (ENSOTSG00005044382)	UQCC5 (ENSOTSG00005044383)	ENSOTSG00005044384	kctd6b (ENSOTSG00005044385)	abhd6b (ENSOTSG00005044386)	slmapb (ENSOTSG00005044387)	cers5 (ENSOTSG00005044389)	ENSOTSG00005044415	ENSOTSG00005044417	ABTB1 (ENSOTSG00005044418)	ENSOTSG00005044420	grip2a (ENSOTSG00005044449)	rpl32 (ENSOTSG00005044572)	ssuh2rs1 (ENSOTSG00005044573)	DCAF1 (ENSOTSG00005044577)
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	8	ENSOKIG00005035457	ENSOKIG00005035406	ENSOKIG00005035353	PRICKLE2 (ENSOKIG00005035312)	MAGI1 (ENSOKIG00005034935)	REN (ENSOKIG00005034802)	ENSOKIG00005034759	mapkapk2b (ENSOKIG00005034502)	eif2d (ENSOKIG00005033500)	ENSOKIG00005032926	ENSOKIG00005032869	rh50 (ENSOKIG00005032704)	rbm39b (ENSOKIG00005032574)	or90j1 (ENSOKIG00005032555)	YWHAB (ENSOKIG00005032541)	ENSOKIG00005032504 #22	OGN (ENSOKIG00005032466)	ENSOKIG00005032450	SLC6A6 (ENSOKIG00005031975)	GRIP2 (ENSOKIG00005031817)	ENSOKIG00005031795	DCAF1 (ENSOKIG00005031675)	DOCK3 (ENSOKIG00005030656)	ENSOKIG00005030603	ENSOKIG00005030522	DAG1 (ENSOKIG00005030503)	ENSOKIG00005030191	AMIGO3 (ENSOKIG00005030126)	ENSOKIG00005030111	USP11 (ENSOKIG00005023371)	ndufv1 (ENSOKIG00005022193)
Coho salmon	MODERN SPECIES	16	ogg1 (ENSOKIG00005023434)	qars1 (ENSOKIG00005023491)	QRICH1 (ENSOKIG00005025765)	ENSOKIG00005006173	prickle2a (ENSOKIG00005006218)	rho (ENSOKIG00005006244)	MAGI1 (ENSOKIG00005006281)	REN (ENSOKIG00005006402)	ENSOKIG00005006474	mapkapk2b (ENSOKIG00005006524)	ENSOKIG00005006940	ENSOKIG00005007249	rbm39b (ENSOKIG00005012301)	pabpc1l (ENSOKIG00005012571)	YWHAB (ENSOKIG00005012677)	ENSOKIG00005012915 #22	ognb (ENSOKIG00005012922)	UQCC5 (ENSOKIG00005012934)	ENSOKIG00005012938	kctd6b (ENSOKIG00005012943)	abhd6b (ENSOKIG00005012954)	slmapb (ENSOKIG00005012966)	cers5 (ENSOKIG00005012981)	ENSOKIG00005013051	ENSOKIG00005013065	ABTB1 (ENSOKIG00005013075)	ENSOKIG00005013127	grip2a (ENSOKIG00005013376)	ENSOKIG00005015535	ssuh2rs1 (ENSOKIG00005015560)	DCAF1 (ENSOKIG00005015679)
Huchen	MODERN SPECIES	602			prickle2a (ENSHHUG00000002974)	rho (ENSHHUG00000002989)	MAGI1 (ENSHHUG00000003177)	ren (ENSHHUG00000003227)	ENSHHUG00000003274	mapkapk2b (ENSHHUG00000003329)	eif2d (ENSHHUG00000003385)	ENSHHUG00000003467	ENSHHUG00000003483	rh50 (ENSHHUG00000005564)	rbm39b (ENSHHUG00000005715)	pabpc1l (ENSHHUG00000005875)	YWHAB (ENSHHUG00000006008)	ENSHHUG00000006200 #22	ognb (ENSHHUG00000006396)	UQCC5 (ENSHHUG00000006402)
Northern pike	MODERN SPECIES	11	ENSELUG00000024616	FMOD (ENSELUG00000001788)	ENSELUG00000001789	eif2d (ENSELUG00000001790)	ENSELUG00000001791	ENSELUG00000001793	rbm39b (ENSELUG00000001796)	ENSELUG00000027816	ENSELUG00000025560	or90j1 (ENSELUG00000032119)	ENSELUG00000001801	ENSELUG00000001800	or90j1 (ENSELUG00000026567)	pabpc1l (ENSELUG00000001811)	ywhabb (ENSELUG00000001812)	ENSELUG00000001813 #22	ognb (ENSELUG00000001814)	UQCC5 (ENSELUG00000001815)	ENSELUG00000001816	kctd6b (ENSELUG00000001817)	abhd6b (ENSELUG00000001820)	slmapb (ENSELUG00000001822)	cers5 (ENSELUG00000001826)	ENSELUG00000001829	ENSELUG00000001831	ABTB1 (ENSELUG00000001833)	ENSELUG00000001837	grip2a (ENSELUG00000001845)	rpl32 (ENSELUG00000001851)	ssuh2rs1 (ENSELUG00000001855)	DCAF1 (ENSELUG00000001858)
Clupeocephala	ANCESTRAL SPECIES	20	ENSGT00390000000616	ENSGT00390000003282.B.f	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000153541.D	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238.a	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121
Otomorpha	ANCESTRAL SPECIES	29	ENSGT00390000000616	ENSGT00390000003282.B.f	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000153541.D	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238.a	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.e.b	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109
Otophysi	ANCESTRAL SPECIES	2														ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238.a	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.e.b	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109
Characiphysae	ANCESTRAL SPECIES	5	ENSGT00940000156062.m	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000013266	ENSGT00390000003839.a	ENSGT00390000003839.b	ENSGT00950000183077.a.b	ENSGT00940000156084	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238.a	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.e.b	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109
Channel catfish	DUPLICATION
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	28	ENSIPUG00000009540	ENSIPUG00000009548	ENSIPUG00000009561	ENSIPUG00000009569	ARID1B (ENSIPUG00000009593)	zdhhc14 (ENSIPUG00000009625)	LGALS8 (ENSIPUG00000009677)	Gnmt (ENSIPUG00000009695)	ENSIPUG00000009740	kcnk5 (ENSIPUG00000009767)	ENSIPUG00000009780	KCNK16 (ENSIPUG00000009801)	kif6 (ENSIPUG00000009813)	daam2 (ENSIPUG00000009881)	mocs1 (ENSIPUG00000010033)	si:dkey-42i9.4 (ENSIPUG00000010105) #22	fosl2 (ENSIPUG00000010121)	bre (ENSIPUG00000010142)	rbks (ENSIPUG00000010213)	mrpl33 (ENSIPUG00000010286)	ENSIPUG00000010318	slc4a1ap (ENSIPUG00000010333)	Supt7l (ENSIPUG00000010373)	lrfn2 (ENSIPUG00000010400)	zgc:194221 (ENSIPUG00000010413)	ENSIPUG00000010452	ENSIPUG00000010469	clip4 (ENSIPUG00000010518)	ENSIPUG00000010609	ENSIPUG00000010737	ENSIPUG00000010771
Channel catfish	MODERN SPECIES	13	ptpdc1 (ENSIPUG00000013661)	Wnt7a (ENSIPUG00000013689)	FBLN2 (ENSIPUG00000013727)	hdac11 (ENSIPUG00000013866)	IQSEC1 (ENSIPUG00000013985)	ACAD9 (ENSIPUG00000014063)	kiaa1257 (ENSIPUG00000014151)	efcc1 (ENSIPUG00000014169)	map1lc3a (ENSIPUG00000014184)	dynlrb1 (ENSIPUG00000014214)	st3gal8 (ENSIPUG00000014224)	ENSIPUG00000014245	ENSIPUG00000014317	cpne1 (ENSIPUG00000014447)	rbm12 (ENSIPUG00000014491)	si:dkey-42i9.4 (ENSIPUG00000014500) #22	Utp3 (ENSIPUG00000014510)	ppcs (ENSIPUG00000014595)	FOXJ3 (ENSIPUG00000014630)	tmem51b (ENSIPUG00000014700)	fam83d (ENSIPUG00000014706)	adnpa (ENSIPUG00000014716)	prdm2 (ENSIPUG00000014729)	kaznb (ENSIPUG00000014784)	ENSIPUG00000014805	ENSIPUG00000014816	myg1 (ENSIPUG00000014822)	timm17a (ENSIPUG00000014845)	LMOD1 (ENSIPUG00000014866)	shisa4 (ENSIPUG00000014876)	Ipo9 (ENSIPUG00000014896)
Channel catfish	MODERN SPECIES	13	timp4 (ENSIPUG00000011732)	syn2 (ENSIPUG00000011716)	PPARG (ENSIPUG00000011668)	tsen2 (ENSIPUG00000011651)	MKRN2OS (ENSIPUG00000011647)	ENSIPUG00000011635	mkrn2 (ENSIPUG00000011589)	raf1 (ENSIPUG00000011435)	ENSIPUG00000011418	Isy1 (ENSIPUG00000011379)	zgc:77375 (ENSIPUG00000011342)	RAB43 (ENSIPUG00000011323)	nuf2 (ENSIPUG00000011256)	shisa5 (ENSIPUG00000011229)	atrip (ENSIPUG00000011138)	si:dkey-42i9.4 (ENSIPUG00000011123) #22	ippk (ENSIPUG00000011110)	ecm2 (ENSIPUG00000011082)	aspn (ENSIPUG00000011058)	OMD (ENSIPUG00000011045)	ogn (ENSIPUG00000011040)	cenpp (ENSIPUG00000010997)	nol8 (ENSIPUG00000010933)	ENSIPUG00000010918	ENSIPUG00000010913	nisch (ENSIPUG00000010896)	stab1 (ENSIPUG00000010453)	ccdc71 (ENSIPUG00000010381)	KCTD6 (ENSIPUG00000010343)	pdhb (ENSIPUG00000010279)	PXK (ENSIPUG00000010143)
Characiphysae_b	ANCESTRAL SPECIES	8	ENSGT00940000159798	ENSGT00940000156062.m	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000013266	ENSGT00390000003839.a	ENSGT00390000003839.b	ENSGT00950000183077.a.b	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238.a	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.e.b	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109
Characoidei	ANCESTRAL SPECIES	38	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000013266	ENSGT00390000003839.a	ENSGT00390000003839.b	ENSGT00950000183077.a.b	ENSGT00940000156084	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238.a	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.e.b	ENSGT00940000155146	ENSGT00390000017669
Red-bellied piranha	MODERN SPECIES	103	syn2b (ENSPNAG00000000793)	timp4.3 (ENSPNAG00000008221)	PPARG (ENSPNAG00000008214)	tsen2 (ENSPNAG00000008203)	MKRN2OS (ENSPNAG00000008194)	ENSPNAG00000000758	mkrn2 (ENSPNAG00000008184)	raf1b (ENSPNAG00000008167)	ENSPNAG00000008143	isy1 (ENSPNAG00000000703)	zgc:77375 (ENSPNAG00000008127)	rab43 (ENSPNAG00000000692)	nuf2 (ENSPNAG00000000683)	shisa10.1 (ENSPNAG00000000671)	atrip (ENSPNAG00000008094)	si:dkey-42i9.4 (ENSPNAG00000008076) #22	ippk (ENSPNAG00000008073)	cenpp (ENSPNAG00000000629)	ECM2 (ENSPNAG00000008055)	aspn (ENSPNAG00000008046)	OMD (ENSPNAG00000006585)	ogna (ENSPNAG00000029996)	nol8 (ENSPNAG00000029992)	ENSPNAG00000004690	NISCH (ENSPNAG00000029982)	stab1 (ENSPNAG00000005656)	ccdc71 (ENSPNAG00000029934)	kctd6a (ENSPNAG00000029932)	pdhb (ENSPNAG00000029924)	pxk (ENSPNAG00000029914)	HTD2 (ENSPNAG00000029891)
Mexicana tetra	MODERN SPECIES	14	timp4.3 (ENSAMXG00000042051)	syn2b (ENSAMXG00000032883)	PPARG (ENSAMXG00000043041)	tsen2 (ENSAMXG00000043484)	MKRN2OS (ENSAMXG00000005712)	ENSAMXG00000038911	mkrn2 (ENSAMXG00000005535)	raf1b (ENSAMXG00000005440)	ENSAMXG00000005433	isy1 (ENSAMXG00000005423)	zgc:77375 (ENSAMXG00000029468)	rab43 (ENSAMXG00000032172)	nuf2 (ENSAMXG00000005348)	shisa10.1 (ENSAMXG00000039145)	atrip (ENSAMXG00000005302)	si:dkey-42i9.4 (ENSAMXG00000005289) #22	ENSAMXG00000041795	ippk (ENSAMXG00000033401)	ENSAMXG00000034242	grm2b (ENSAMXG00000006790)	rrp9 (ENSAMXG00000006788)	ENSAMXG00000032725	cav4a (ENSAMXG00000006781)	sort1a (ENSAMXG00000029078)	psma5 (ENSAMXG00000006729)	sypl2a (ENSAMXG00000033508)	atxn7l2a (ENSAMXG00000033798)	cyb561d1 (ENSAMXG00000032574)	ENSAMXG00000006701	USP48 (ENSAMXG00000006693)	LDLRAD2 (ENSAMXG00000039337)
Electric eel	MODERN SPECIES	2110																si:dkey-42i9.4 (ENSEEEG00000000847) #22
Cyprinoidei	ANCESTRAL SPECIES	39	ENSGT00940000159993	ENSGT00510000047872	ENSGT00390000006932	ENSGT00940000157395	ENSGT00940000161296	ENSGT01020000230364.a.a.a.b.lb	ENSGT00390000008040.bb.a	ENSGT00940000155664.a.b	ENSGT00440000038072.c	ENSGT00940000155763.a.b	ENSGT00940000156388	ENSGT00990000210162	ENSGT00940000166256.i.a	ENSGT00940000166256.j	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238.a	ENSGT00390000011897	ENSGT00390000004860.d	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.e.b	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	11	ENSGT00440000038072.c	ENSGT00940000155763.a.b.b	ENSGT00940000156388.a	ENSGT00940000166256.i.a.a.a.b.b	ENSGT00940000166256.i.a.a.a.b.a	ENSGT00940000166256.j.b	ENSGT00940000166455	ENSGT00950000182952.C.g.b.d #22	ENSGT00390000010053.a	ENSGT00390000011897.d	ENSGT00940000159941.a	ENSGT00940000157444.c	ENSGT00940000160986.b	ENSGT00940000157238.a.b	ENSGT00390000011897.c.a	ENSGT00950000182952.C.g.b.c #22	ENSGT00390000010053.b	ENSGT00940000159941.b	ENSGT00940000157444.d	ENSGT00940000160986.a	ENSGT00940000157238.a.a	ENSGT00390000004860.c	ENSGT00620000089227.a	ENSGT00940000156494.a	ENSGT00940000157928.i	ENSGT00940000155306.a.j	ENSGT00940000157869.e.b.b	ENSGT00940000155146.x	ENSGT00390000017669.e	ENSGT00530000065109.b	ENSGT00510000048121.o
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2447	timm13 (ENSCARG00000055172)	ENSCARG00000055189	ENSCARG00000055230	lsm7 (ENSCARG00000055271)	sass6 (ENSCARG00000055305)	mfsd14a1 (ENSCARG00000055716)	abhd14a (ENSCARG00000056460)	HYAL2 (ENSCARG00000056496)	tusc2b (ENSCARG00000056531)	rassf1 (ENSCARG00000056556)	RAD54L2 (ENSCARG00000056666)	bap1 (ENSCARG00000058930)	ENSCARG00000059422	shisa10.2 (ENSCARG00000059437)	shisa10.1 (ENSCARG00000059450)	si:dkey-42i9.4 (ENSCARG00000059478) #22	ENSCARG00000059514	aspn (ENSCARG00000059560)
Goldfish	MODERN SPECIES	14	ENSCARG00000056833	enc3 (ENSCARG00000056864)	timm13 (ENSCARG00000056873)	ENSCARG00000056908	lsm7 (ENSCARG00000056947)	sass6 (ENSCARG00000056981)	mfsd14a1 (ENSCARG00000057145)	abhd14a (ENSCARG00000057162)	HYAL2 (ENSCARG00000057193)	tusc2b (ENSCARG00000057225)	rassf1 (ENSCARG00000057264)	RAD54L2 (ENSCARG00000057376)	bap1 (ENSCARG00000058269)	shisa10.2 (ENSCARG00000058482)	shisa10.1 (ENSCARG00000058512)	si:dkey-42i9.4 (ENSCARG00000058597) #22	ECM2 (ENSCARG00000058637)	aspn (ENSCARG00000058839)	OMD (ENSCARG00000058867)	ogna (ENSCARG00000059049)	ENSCARG00000059062	mfng (ENSCARG00000059092)	ENSCARG00000059144	ENSCARG00000059202	ENSCARG00000059219	ENSCARG00000059238	ENSCARG00000059258	ENSCARG00000059273	ENSCARG00000059294	ENSCARG00000059320	ENSCARG00000059331
Cyprininae_a	ANCESTRAL SPECIES	274	ENSGT00950000182983.B.a.a.h	ENSGT00390000014000.a	ENSGT00940000159993.x	ENSGT00510000047872.q	ENSGT00390000006932.a	ENSGT00940000157395.h.b	ENSGT00940000161296.b	ENSGT01020000230364.a.a.a.b.lb.a	ENSGT00390000008040.bb.a.a	ENSGT00940000155664.a.b.b	ENSGT00940000155763.a.b.a	ENSGT00940000156388.b	ENSGT00990000210162.a	ENSGT00940000166256.j.a	ENSGT00940000166455.b	ENSGT00950000182952.C.g.b.c #22	ENSGT00390000010053.b	ENSGT00390000011897.c.a	ENSGT00940000159941.b	ENSGT00940000157444.d	ENSGT00940000160986.a	ENSGT00940000157238.a.a	ENSGT00390000004860.d	ENSGT00620000089227.b	ENSGT00940000156494.b	ENSGT00940000157928.j	ENSGT00940000155306.a.i	ENSGT00940000157869.e.b.a	ENSGT00940000155146.w	ENSGT00390000017669.f	ENSGT00530000065109.a
Common carp reference	MODERN SPECIES	5	ENSCCRG00000061867	lsm7 (ENSCCRG00000061139)	sass6 (ENSCCRG00000020918)	mfsd14a1 (ENSCCRG00000039248)	abhd14a (ENSCCRG00000078617)	HYAL2 (ENSCCRG00000025358)	tusc2b (ENSCCRG00000020616)	rassf1 (ENSCCRG00000077438)	ENSCCRG00000025427	bap1 (ENSCCRG00000039948)	ENSCCRG00000032777	shisa10.2 (ENSCCRG00000032769)	ENSCCRG00000057577	shisa10.1 (ENSCCRG00000082207)	atrip (ENSCCRG00000055206)	si:dkey-42i9.4 (ENSCCRG00000060846) #22	ippk (ENSCCRG00000000860)	ENSCCRG00000054138	ECM2 (ENSCCRG00000011404)	aspn (ENSCCRG00000011413)	ENSCCRG00000011416	ogna (ENSCCRG00000061408)	nol8 (ENSCCRG00000020107)	ENSCCRG00000020111	ENSCCRG00000058269	stab1 (ENSCCRG00000043561)	ccdc71 (ENSCCRG00000082420)	kctd6a (ENSCCRG00000043551)	pdhb (ENSCCRG00000069793)	pxk (ENSCCRG00000037768)	rbck1 (ENSCCRG00000053848)
Golden-line barbel	MODERN SPECIES	86	ENSSGRG00000027675	lsm7 (ENSSGRG00000027673)	sass6 (ENSSGRG00000027672)	mfsd14a1 (ENSSGRG00000027671)	mfsd14a1 (ENSSGRG00000027245)	abhd14a (ENSSGRG00000027219)	HYAL2 (ENSSGRG00000027215)	tusc2b (ENSSGRG00000027214)	rassf1 (ENSSGRG00000027212)	RAD54L2 (ENSSGRG00000027177)	bap1 (ENSSGRG00000027125)	ENSSGRG00000027113	ENSSGRG00000027111	shisa10.1 (ENSSGRG00000027108)	atrip (ENSSGRG00000027101)	si:dkey-42i9.4 (ENSSGRG00000027106) #22	ippk (ENSSGRG00000027100)	ECM2 (ENSSGRG00000027099)	aspn (ENSSGRG00000027056)	OMD (ENSSGRG00000027055)	ogna (ENSSGRG00000027054)	ENSSGRG00000027053	nol8 (ENSSGRG00000027052)	ENSSGRG00000027051	NISCH (ENSSGRG00000026813)	ccdc71 (ENSSGRG00000026790)	kctd6a (ENSSGRG00000026789)	pdhb (ENSSGRG00000026641)	pxk (ENSSGRG00000025768)	HTD2 (ENSSGRG00000025749)	rbck1 (ENSSGRG00000025747)
Cyprininae	ANCESTRAL SPECIES	11	ENSGT00940000166256.j.a	ENSGT00510000047872.r	ENSGT00390000006932.b	ENSGT00940000157395.h.a	ENSGT00940000161296.a	ENSGT01020000230364.a.a.a.b.lb.b	ENSGT00390000008040.bb.a.b	ENSGT00940000155664.a.b.a	ENSGT00440000038072.c	ENSGT00940000155763.a.b.b	ENSGT00940000156388.a	ENSGT00940000166256.i.a.a.a.b.b	ENSGT00940000166256.i.a.a.a.b.a	ENSGT00940000166256.j.b	ENSGT00940000166455	ENSGT00950000182952.C.g.b.d #22	ENSGT00390000010053.a	ENSGT00390000011897.d	ENSGT00940000159941.a	ENSGT00940000157444.c	ENSGT00940000160986.b	ENSGT00940000157238.a.b	ENSGT00390000011897.c.a	ENSGT00950000182952.C.g.b.c #22	ENSGT00390000010053.b	ENSGT00940000159941.b	ENSGT00940000157444.d	ENSGT00940000160986.a	ENSGT00940000157238.a.a	ENSGT00390000004860.c	ENSGT00620000089227.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2932														shisa10.1 (ENSCARG00000063626)	atrip (ENSCARG00000063569)	si:dkey-42i9.4 (ENSCARG00000063561) #22	ippk (ENSCARG00000063496)
Goldfish	MODERN SPECIES	41	mfsd14a1 (ENSCARG00000019493)	abhd14a (ENSCARG00000019463)	HYAL2 (ENSCARG00000019456)	tusc2b (ENSCARG00000019446)	rassf1 (ENSCARG00000019439)	cyb561d2 (ENSCARG00000019436)	ENSCARG00000019430	ENSCARG00000019425	ENSCARG00000019423	RAD54L2 (ENSCARG00000018782)	bap1 (ENSCARG00000018642)	shisa10.2 (ENSCARG00000018623)	shisa10.2 (ENSCARG00000018591)	shisa10.1 (ENSCARG00000018582)	atrip (ENSCARG00000018562)	si:dkey-42i9.4 (ENSCARG00000018546) #22	ippk (ENSCARG00000018521)	aspn (ENSCARG00000018504)	OMD (ENSCARG00000018501)	ogna (ENSCARG00000018484)	cenpp (ENSCARG00000068906)	ENSCARG00000068902	ENSCARG00000068897	stab1 (ENSCARG00000068815)	ccdc71 (ENSCARG00000068792)	kctd6a (ENSCARG00000068781)	pdhb (ENSCARG00000068554)	pxk (ENSCARG00000068210)	HTD2 (ENSCARG00000068161)	rpp14 (ENSCARG00000068153)	rbck1 (ENSCARG00000068121)
Cyprininae_a	ANCESTRAL SPECIES	144	ENSGT00390000006932.b	ENSGT00940000157395.h.a	ENSGT00940000157395.g	ENSGT00940000161296.a	ENSGT01020000230364.a.a.a.b.lb.b	ENSGT00390000008040.bb.a.b	ENSGT00940000155664.a.b.a	ENSGT00440000038072.c	ENSGT00940000155763.a.b.b	ENSGT00940000156388.a	ENSGT00940000166256.i.a.a.a.b.b	ENSGT00990000210162.b	ENSGT00940000166256.i.a.a.b	ENSGT00940000166256.j.b	ENSGT00940000166455.a	ENSGT00950000182952.C.g.b.d #22	ENSGT00390000010053.a	ENSGT00390000011897.d	ENSGT00940000159941.a	ENSGT00940000157444.c	ENSGT00940000160986.b	ENSGT00940000157238.a.b	ENSGT00390000011897.c.b	ENSGT00390000004860.c	ENSGT00620000089227.a	ENSGT00940000156494.a	ENSGT00940000157928.i	ENSGT00940000155306.a.j	ENSGT00940000157869.e.b.b	ENSGT00940000155146.x	ENSGT00390000017669.e
Common carp reference	MODERN SPECIES	43	lsm7 (ENSCCRG00000020914)	sass6 (ENSCCRG00000039233)	mfsd14a1 (ENSCCRG00000020976)	HYAL2 (ENSCCRG00000075870)	tusc2b (ENSCCRG00000055777)	rassf1 (ENSCCRG00000020631)	cyb561d2 (ENSCCRG00000025423)	ENSCCRG00000078526	ENSCCRG00000020662	bap1 (ENSCCRG00000032782)	shisa10.2 (ENSCCRG00000011552)	ENSCCRG00000076084	ENSCCRG00000000796	ENSCCRG00000054014	shisa10.1 (ENSCCRG00000078382)	si:dkey-42i9.4 (ENSCCRG00000000851) #22	atrip (ENSCCRG00000023867)	ippk (ENSCCRG00000011379)	ECM2 (ENSCCRG00000013138)	aspn (ENSCCRG00000013156)	ogna (ENSCCRG00000075622)	cenpp (ENSCCRG00000020051)	ENSCCRG00000054453	ENSCCRG00000070244	stab1 (ENSCCRG00000005249)	ccdc71 (ENSCCRG00000069065)	kctd6a (ENSCCRG00000037762)	pdhb (ENSCCRG00000077318)	pxk (ENSCCRG00000043544)	ENSCCRG00000067718	rbck1 (ENSCCRG00000039034)
Golden-line barbel	MODERN SPECIES	162	timm13 (ENSSGRG00000038782)	ENSSGRG00000038795	sass6 (ENSSGRG00000038801)	lsm7 (ENSSGRG00000039110)	ENSSGRG00000039112	abhd14a (ENSSGRG00000039113)	HYAL2 (ENSSGRG00000039114)	tusc2b (ENSSGRG00000039115)	rassf1 (ENSSGRG00000039129)	cyb561d2 (ENSSGRG00000039130)	RAD54L2 (ENSSGRG00000039131)	ENSSGRG00000039154	shisa10.2 (ENSSGRG00000039155)	ENSSGRG00000039157	atrip (ENSSGRG00000039158)	si:dkey-42i9.4 (ENSSGRG00000039160) #22	ippk (ENSSGRG00000039163)	cenpp (ENSSGRG00000039175)	ECM2 (ENSSGRG00000039176)	ENSSGRG00000039181	aspn (ENSSGRG00000039183)	OMD (ENSSGRG00000039185)	ogna (ENSSGRG00000039188)	ENSSGRG00000039190	ENSSGRG00000039195	NISCH (ENSSGRG00000039214)	stab1 (ENSSGRG00000039810)	ccdc71 (ENSSGRG00000039815)	kctd6a (ENSSGRG00000039817)	pdhb (ENSSGRG00000039822)
Zebrafish	MODERN SPECIES	14	lsm7 (ENSDARG00000058328)	sass6 (ENSDARG00000058346)	mfsd14a1 (ENSDARG00000043055)	abhd14a (ENSDARG00000058367)	HYAL2 (ENSDARG00000062997)	tusc2b (ENSDARG00000025340)	rassf1 (ENSDARG00000004840)	cyb561d2 (ENSDARG00000044114)	RAD54L2 (ENSDARG00000063031)	bap1 (ENSDARG00000063051)	ENSDARG00000071541	ENSDARG00000095854	shisa10.2 (ENSDARG00000071543)	shisa10.1 (ENSDARG00000013681)	atrip (ENSDARG00000063076)	si:dkey-42i9.4 (ENSDARG00000008049) #22	ippk (ENSDARG00000003446)	ENSDARG00000071549	aspn (ENSDARG00000002192)	OMD (ENSDARG00000093600)	ogna (ENSDARG00000044132)	cenpp (ENSDARG00000044135)	nol8 (ENSDARG00000044143)	NISCH (ENSDARG00000043077)	stab1 (ENSDARG00000076484)	ccdc71 (ENSDARG00000071570)	kctd6a (ENSDARG00000043095)	pdhb (ENSDARG00000021346)	pxk (ENSDARG00000063195)	rpp14 (ENSDARG00000011152)	rbck1 (ENSDARG00000031954)
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00940000156062.m	ENSGT00390000000616	ENSGT00390000003282.B.f	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000157238.a	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.f	ENSGT00940000157869.e.b	ENSGT00940000155146	ENSGT00390000017669
Protacanthopterygii	ANCESTRAL SPECIES	95	ENSGT00940000156199.a.a	ENSGT00950000183160.C	ENSGT00390000000616	ENSGT00390000003282.B.f	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027.b.l	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00990000210069	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053	ENSGT00390000011897	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000157238.a	ENSGT00980000199506	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.e.b	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109
Salmoninae	ANCESTRAL SPECIES	343										ENSGT00940000157262.m.a.b	ENSGT00940000157494	ENSGT00940000156030.j.i.a	ENSGT00940000166256.e	ENSGT00940000166455	ENSGT00940000170238	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053.d	ENSGT00390000011897	ENSGT00940000159941.d	ENSGT00940000157444	ENSGT00940000157238.a.d	ENSGT00980000199506	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000155306.a.p.b	ENSGT00940000155146.z	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a
Huchen	MODERN SPECIES	5007															ENSHHUG00000048697	si:dkey-42i9.4 (ENSHHUG00000048699) #22	ippk (ENSHHUG00000048700)
Salmoninae_a	ANCESTRAL SPECIES	78	ENSGT00390000000616	ENSGT00390000003282.B.f.a.a	ENSGT00390000017509.c.a	ENSGT00390000017509.d	ENSGT00940000160690.j	ENSGT00940000156027.b.l.b	ENSGT00940000157569	ENSGT00940000166500.j.b	ENSGT00550000074921	ENSGT00390000007084.n	ENSGT00940000157262.m.a.b	ENSGT00940000157494	ENSGT00940000156030.j.i.a	ENSGT00940000166256.e	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053.d	ENSGT00390000011897	ENSGT00940000159941.d	ENSGT00940000157444	ENSGT00940000157238.a.d	ENSGT00980000199506	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000155306.a.p.b	ENSGT00940000155146.z	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a
Salmo	ANCESTRAL SPECIES	61	ENSGT00950000183160.C	ENSGT00390000000616	ENSGT00390000003282.B.f.a.a	ENSGT00390000017509.c.a	ENSGT00940000160690.j	ENSGT00940000156027.b.l.b	ENSGT00940000157569	ENSGT00940000166500.j.b	ENSGT00550000074921	ENSGT00390000007084.n	ENSGT00940000157262.m.a.b	ENSGT00940000157494	ENSGT00940000156030.j.i.a	ENSGT00940000166256.e	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053.d	ENSGT00940000159941.d	ENSGT00940000157444	ENSGT00940000157238.a.d	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000155306.a.p.b	ENSGT00940000155146.z.a	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00950000182846.a.a.a.b
River trout	MODERN SPECIES	7	vgll4b (ENSSTUG00000047575)	ATG7 (ENSSTUG00000047213)	HRH1 (ENSSTUG00000047184)	slc6a1b (ENSSTUG00000047060)	SLC6A11 (ENSSTUG00000046750)	atp2b2 (ENSSTUG00000046705)	ENSSTUG00000046691	iars1 (ENSSTUG00000045850)	rpl29 (ENSSTUG00000045771)	ENSSTUG00000045767	dusp7 (ENSSTUG00000045763)	POC1A (ENSSTUG00000045727)	alas1 (ENSSTUG00000045702)	ENSSTUG00000045689	atrip (ENSSTUG00000045675)	si:dkey-42i9.4 (ENSSTUG00000045652) #22	ippk (ENSSTUG00000045536)	aspn (ENSSTUG00000045523)	ogna (ENSSTUG00000045506)	cenpp (ENSSTUG00000045488)	nol8 (ENSSTUG00000045474)	ENSSTUG00000045468	NISCH (ENSSTUG00000045443)	ccdc71 (ENSSTUG00000045439)	pdhb (ENSSTUG00000045240)	pxk (ENSSTUG00000045147)	HTD2 (ENSSTUG00000045132)	rpp14 (ENSSTUG00000045107)	ABHD6 (ENSSTUG00000045081)	DNASE1L3 (ENSSTUG00000045062)	ENSSTUG00000045044
Atlantic salmon	MODERN SPECIES	14	HRH1 (ENSSSAG00000092640)	slc6a1 (ENSSSAG00000058908)	slc6a11 (ENSSSAG00000058411)	atp2b2 (ENSSSAG00000066940)	ENSSSAG00000112229	ENSSSAG00000118875	ENSSSAG00000108332	iars1 (ENSSSAG00000044994)	RL29 (ENSSSAG00000047422)	ENSSSAG00000090219	POC1A (ENSSSAG00000059731)	HEM1 (ENSSSAG00000059816)	ENSSSAG00000102098	atrip (ENSSSAG00000085098)	ENSSSAG00000102491	si:dkey-42i9.4 (ENSSSAG00000096401) #22	ippk (ENSSSAG00000060532)	ENSSSAG00000087528	ECM2 (ENSSSAG00000092173)	aspn (ENSSSAG00000101220)	ogna (ENSSSAG00000108887)	ENSSSAG00000089807	nol8 (ENSSSAG00000060839)	ENSSSAG00000060934	ccdc71 (ENSSSAG00000061089)	pdhb (ENSSSAG00000061136)	pxk (ENSSSAG00000061201)	RPP14 (ENSSSAG00000061498)	abhd6 (ENSSSAG00000091890)	dnase1l3 (ENSSSAG00000100060)	FLNB (ENSSSAG00000062100)
Oncorhynchus	ANCESTRAL SPECIES	81									ENSGT00550000074921	ENSGT00390000007084.n	ENSGT00940000157262.m.a.b	ENSGT00940000157494	ENSGT00940000156030.j.i.a	ENSGT00940000166256.e	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053.d	ENSGT00390000011897	ENSGT00940000159941.d	ENSGT00940000157444	ENSGT00940000157238.a.d	ENSGT00980000199506	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000155306.a.p.b	ENSGT00940000155146.z	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a
Oncorhynchus_a	ANCESTRAL SPECIES	95									ENSGT00550000074921	ENSGT00390000007084.n	ENSGT00940000157262.m.a.b	ENSGT00940000157494	ENSGT00940000156030.j.i.a	ENSGT00940000166256.e	ENSGT00940000166455	ENSGT00950000182952.C.g.b #22	ENSGT00390000010053.d	ENSGT00390000011897	ENSGT00940000159941.d	ENSGT00940000157444	ENSGT00940000157238.a.d	ENSGT00980000199506	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000155306.a.p.b	ENSGT00940000155146.z	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a
Chinook salmon	MODERN SPECIES	98										zgc:194679 (ENSOTSG00005037618)	nqo1 (ENSOTSG00005037596)	POC1A (ENSOTSG00005018278)	alas1 (ENSOTSG00005018266)	shisa10.1 (ENSOTSG00005018264)	atrip (ENSOTSG00005018263)	si:dkey-42i9.4 (ENSOTSG00005018262) #22	ippk (ENSOTSG00005018261)
Coho salmon	MODERN SPECIES	25	SLC6A11 (ENSOKIG00005017436)	SLC6A1 (ENSOKIG00005017979)	HRH1 (ENSOKIG00005018069)	ATG7 (ENSOKIG00005018086)	ENSOKIG00005018228	vgll4b (ENSOKIG00005018234)	ENSOKIG00005018248	iars1 (ENSOKIG00005018283)	ENSOKIG00005018375	RPL29 (ENSOKIG00005018402)	DUSP7 (ENSOKIG00005018425)	POC1A (ENSOKIG00005018445)	ALAS1 (ENSOKIG00005018481)	ENSOKIG00005018560	atrip (ENSOKIG00005018569)	si:dkey-42i9.4 (ENSOKIG00005018583) #22	ippk (ENSOKIG00005018599)	cenpp (ENSOKIG00005018639)	ECM2 (ENSOKIG00005018656)	aspn (ENSOKIG00005018663)	ogna (ENSOKIG00005018671)	nol8 (ENSOKIG00005018694)	ENSOKIG00005018707	NISCH (ENSOKIG00005018720)	ccdc71 (ENSOKIG00005018742)	pdhb (ENSOKIG00005018758)	pxk (ENSOKIG00005019010)	HTD2 (ENSOKIG00005019641)	rpp14 (ENSOKIG00005019652)	ABHD6 (ENSOKIG00005019668)	DNASE1L3 (ENSOKIG00005019674)
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000064680	ENSOMYG00000065067	ENSOMYG00000067236	ENSOMYG00000076512	ENSOMYG00000066553	ENSOMYG00000059364	ENSOMYG00000067489	ENSOMYG00000066387	ENSOMYG00000001275	ENSOMYG00000001340	ENSOMYG00000063674	ENSOMYG00000001394	ENSOMYG00000001432	ENSOMYG00000075884	atrip (ENSOMYG00000064373)	si:dkey-42i9.4 (ENSOMYG00000001542) #22	ippk (ENSOMYG00000001578)	cenpp (ENSOMYG00000001628)	ECM2 (ENSOMYG00000001645)	aspn (ENSOMYG00000001737)	ogna (ENSOMYG00000001781)	ENSOMYG00000057548	nol8 (ENSOMYG00000075591)	ENSOMYG00000023078	ENSOMYG00000055152	ENSOMYG00000070738	ENSOMYG00000053997	ccdc71 (ENSOMYG00000001852)	ENSOMYG00000077128	pdhb (ENSOMYG00000001925)	pxk (ENSOMYG00000001969)
Northern pike	MODERN SPECIES	1	ATG7 (ENSELUG00000015820)	HRH1 (ENSELUG00000015774)	slc6a1b (ENSELUG00000015754)	ENSELUG00000031712	SLC6A11 (ENSELUG00000015728)	ENSELUG00000033904	atp2b2 (ENSELUG00000015676)	iars1 (ENSELUG00000015636)	ENSELUG00000030006	rpl29 (ENSELUG00000015592)	dusp7 (ENSELUG00000015526)	POC1A (ENSELUG00000015504)	alas1 (ENSELUG00000015461)	shisa10.1 (ENSELUG00000030351)	atrip (ENSELUG00000000567)	BTG1 (ENSELUG00000032970) #22	ippk (ENSELUG00000015362)	ECM2 (ENSELUG00000000561)	aspn (ENSELUG00000000558)	ogna (ENSELUG00000015301)	cenpp (ENSELUG00000015340)	ENSELUG00000027100	ENSELUG00000015288	ENSELUG00000025870	ENSELUG00000015264	ENSELUG00000015253	ENSELUG00000027716	stab1 (ENSELUG00000015199)	ccdc71 (ENSELUG00000015098)	kctd6a (ENSELUG00000015083)	pdhb (ENSELUG00000015056)
Clupeocephala	ANCESTRAL SPECIES	152							ENSGT01010000222336.b.a.b.a	ENSGT00940000156003.l.b	ENSGT01070000253775.a.d.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00510000047522	ENSGT00950000183004.a.b.b	ENSGT00640000091774.a	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00940000180250	ENSGT00390000015805.a	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000154527.a.a.b.a	ENSGT00510000047602	ENSGT00390000016313.a.a	ENSGT00940000160568	ENSGT01030000234814	ENSGT00940000155126.t
Euteleosteomorpha	ANCESTRAL SPECIES	60	ENSGT00940000155867.a.b	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT00990000205707	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00390000018647	ENSGT00940000157710
Acanthomorphata	ANCESTRAL SPECIES	67	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.d	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00390000014507.b	ENSGT00390000015805.a	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00940000171480	ENSGT00940000164581.B	ENSGT00880000138031	ENSGT00950000182976.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00390000014507.b	ENSGT00390000015805.a	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835
Pinecone sodierfish	MODERN SPECIES	15	tspan11 (ENSMMDG00005021158)	sema3aa (ENSMMDG00005020157)	ENSMMDG00005020122	cacna2d1a (ENSMMDG00005020111)	hgfa (ENSMMDG00005020099)	ENSMMDG00005020095	LRRC4 (ENSMMDG00005020091)	snd1 (ENSMMDG00005017281)	ENSMMDG00005017225	ENSMMDG00005017222	si:dkey-5i3.5 (ENSMMDG00005017221)	ENSMMDG00005017220	impdh1b (ENSMMDG00005015996)	ENSMMDG00005015962	fam3c (ENSMMDG00005015958)	btg1 (ENSMMDG00005015955) #22	dcn (ENSMMDG00005015950) #25	kera (ENSMMDG00005015945) #27	epyc (ENSMMDG00005015938) #28	si:dkeyp-38g8.5 (ENSMMDG00005015935)	si:ch211-244b2.4 (ENSMMDG00005015930)	ENSMMDG00005015921	scyl2 (ENSMMDG00005015906)	ENSMMDG00005015900	FUT9 (ENSMMDG00005015894)	FUT9 (ENSMMDG00005015893)	FUT9 (ENSMMDG00005015892)	FUT9 (ENSMMDG00005015891)	FUT9 (ENSMMDG00005015886)	tcp11l2 (ENSMMDG00005015882)	apaf1 (ENSMMDG00005015800)
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00390000014507.b	ENSGT00390000015805.a	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835
Tiger tail seahorse	MODERN SPECIES	260										ENSHCOG00000012077	ENSHCOG00000012088	impdh1b (ENSHCOG00000012104)	impdh1b (ENSHCOG00000012116)	ENSHCOG00000012123	fam3c (ENSHCOG00000012163)	btg1 (ENSHCOG00000012176) #22	ENSHCOG00000012187	dcn (ENSHCOG00000012199) #25	lum (ENSHCOG00000012212) #26	kera (ENSHCOG00000012222) #27	epyc (ENSHCOG00000012307) #28	si:dkeyp-38g8.5 (ENSHCOG00000012324)	psmc2 (ENSHCOG00000012361)	slc26a5 (ENSHCOG00000012374)	ENSHCOG00000012404	strap (ENSHCOG00000012449)	spx (ENSHCOG00000012470)	ENSHCOG00000012489	gys2 (ENSHCOG00000012532)	LDHB (ENSHCOG00000000598)	slc25a3b (ENSHCOG00000012567)
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00390000015805.a	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.g.b	ENSGT00940000177480.a
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00940000159260.h	ENSGT00510000047270	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00940000155867.a.b	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00390000015968
Mangrove rivulus	MODERN SPECIES	19										ENSKMAG00000008762	si:dkey-5i3.5 (ENSKMAG00000008778)	ENSKMAG00000008787	impdh1b (ENSKMAG00000008802)	ENSKMAG00000008842	fam3c (ENSKMAG00000008875)	btg1 (ENSKMAG00000008916) #22	ENSKMAG00000008974	dcn (ENSKMAG00000009180) #25	lum (ENSKMAG00000009216) #26	kera (ENSKMAG00000009228) #27	epyc (ENSKMAG00000009247) #28	si:dkeyp-38g8.5 (ENSKMAG00000009306)	si:ch211-244b2.4 (ENSKMAG00000009331)	si:ch211-244b2.3 (ENSKMAG00000009347)	scyl2 (ENSKMAG00000009396)	ENSKMAG00000009476	tcp11l2 (ENSKMAG00000009492)	apaf1 (ENSKMAG00000009512)	anks1b (ENSKMAG00000009595)	uhrf1bp1l (ENSKMAG00000009835)	ENSKMAG00000009968
Turquoise killifish	MODERN SPECIES	1610	ENSNFUG00015003399	ENSNFUG00015003423	cacna2d1a (ENSNFUG00015003476)	hgfa (ENSNFUG00015003689)	pax4 (ENSNFUG00015003700)	snd1 (ENSNFUG00015003758)	LRRC4.1 (ENSNFUG00015004107)	ENSNFUG00015004109	Nfu_g_1_012058 (ENSNFUG00015004110)	PRRT4 (ENSNFUG00015004112)	impdh1b (ENSNFUG00015004128)	ENSNFUG00015004209	FAM3C (ENSNFUG00015004219)	ENSNFUG00015004223	ENSNFUG00015004227	BTG1 (ENSNFUG00015004230) #22	ENSNFUG00015004237	DCN (ENSNFUG00015004249) #25	lum (ENSNFUG00015004253) #26	kera (ENSNFUG00015004256) #27	epyc (ENSNFUG00015004258) #28	ENSNFUG00015004268	si:ch211-244b2.4 (ENSNFUG00015004277)	ENSNFUG00015004284	scyl2 (ENSNFUG00015004308)	DEPDC4 (ENSNFUG00015004366)	tcp11l2 (ENSNFUG00015004375)	ENSNFUG00015004386	anks1b (ENSNFUG00015004405)	ENSNFUG00015004435	uhrf1bp1l (ENSNFUG00015004470)
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00940000159260.h	ENSGT00510000047270	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT00940000164581.B	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00940000167336	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00940000159260.h	ENSGT00510000047270	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00390000015968
Poecilia	ANCESTRAL SPECIES	29	ENSGT00940000167336	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00940000159260.h	ENSGT00510000047270	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00390000015968
NAME_6	ANCESTRAL SPECIES	144											ENSGT00530000064743.b.c	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00390000015968
Sailfin molly	MODERN SPECIES	1137									ENSPLAG00000021182	si:dkey-5i3.5 (ENSPLAG00000021187)	ENSPLAG00000021215	ENSPLAG00000021240	impdh1b (ENSPLAG00000021264)	ENSPLAG00000021319	fam3c (ENSPLAG00000000462)	btg1 (ENSPLAG00000021336) #22	ENSPLAG00000021348
Amazon molly	MODERN SPECIES	404										ENSPFOG00000009135	si:dkey-5i3.5 (ENSPFOG00000009129)	ENSPFOG00000023055	impdh1b (ENSPFOG00000008979)	ENSPFOG00000008791	fam3c (ENSPFOG00000008654)	btg1 (ENSPFOG00000008625) #22	ENSPFOG00000008612	dcn (ENSPFOG00000008407) #25	kera (ENSPFOG00000008371) #27	epyc (ENSPFOG00000008328) #28	si:dkeyp-38g8.5 (ENSPFOG00000008311)	si:ch211-244b2.4 (ENSPFOG00000008262)	ENSPFOG00000008191	scyl2 (ENSPFOG00000007922)	ENSPFOG00000007804	tcp11l2 (ENSPFOG00000007657)	apaf1 (ENSPFOG00000007334)	ENSPFOG00000021939	ENSPFOG00000024317	anks1b (ENSPFOG00000006852)	st8sia1 (ENSPFOG00000006771)
Guppy	MODERN SPECIES	454	cacna2d1a (ENSPREG00000002328)	ENSPREG00000002320	ENSPREG00000002300	pax4 (ENSPREG00000002286)	LRRC4 (ENSPREG00000002278)	snd1 (ENSPREG00000002189)	ENSPREG00000002167	ENSPREG00000002159	ENSPREG00000002150	ENSPREG00000002133	si:dkey-5i3.5 (ENSPREG00000002110)	ENSPREG00000002102	impdh1b (ENSPREG00000002032)	ENSPREG00000001866	fam3c (ENSPREG00000001835)	btg1 (ENSPREG00000001817) #22	ENSPREG00000001801	dcn (ENSPREG00000001779) #25	lum (ENSPREG00000001725) #26	kera (ENSPREG00000001702) #27	EPYC (ENSPREG00000001638) #28	si:dkeyp-38g8.5 (ENSPREG00000001593)	si:ch211-244b2.4 (ENSPREG00000001561)	ENSPREG00000001533	scyl2 (ENSPREG00000001218)	ENSPREG00000001150	ENSPREG00000001131	apaf1 (ENSPREG00000000752)	anks1b (ENSPREG00000023036)	uhrf1bp1l (ENSPREG00000023028)	ENSPREG00000023024
Platyfish	MODERN SPECIES	8	dennd6b (ENSXMAG00000015257)	gcc1 (ENSXMAG00000015300)	arf5 (ENSXMAG00000015306)	lamtor4 (ENSXMAG00000027828)	atp6v1f (ENSXMAG00000015320)	KCNA5 (ENSXMAG00000020121)	KCNA1 (ENSXMAG00000020119)	ENSXMAG00000020118	ENSXMAG00000026635	ENSXMAG00000025240	si:dkey-5i3.5 (ENSXMAG00000026885)	ENSXMAG00000028675	impdh1b (ENSXMAG00000018652)	ENSXMAG00000018632	fam3c (ENSXMAG00000018624)	btg1 (ENSXMAG00000018622) #22	ENSXMAG00000028648	dcn (ENSXMAG00000027036) #25	lum (ENSXMAG00000018604) #26	kera (ENSXMAG00000018602) #27	epyc (ENSXMAG00000018588) #28	si:dkeyp-38g8.5 (ENSXMAG00000026377)	si:ch211-244b2.4 (ENSXMAG00000018584)	si:ch211-244b2.3 (ENSXMAG00000018581)	scyl2 (ENSXMAG00000018567)	ENSXMAG00000018558	tcp11l2 (ENSXMAG00000018543)	apaf1 (ENSXMAG00000018504)	anks1b (ENSXMAG00000001252)	ENSXMAG00000025411	uhrf1bp1l (ENSXMAG00000001296)
NAME_4	ANCESTRAL SPECIES	16	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00940000159260.h	ENSGT00510000047270	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382.n #25	ENSGT00940000158177.b #26	ENSGT00940000158968.j #27	ENSGT01100000264068	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT00940000164581.B	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Mummichog	MODERN SPECIES	2268				cacna2d1a (ENSFHEG00000003995)	hgfa (ENSFHEG00000004020)	pax4 (ENSFHEG00000004042)	LRRC4 (ENSFHEG00000004055)	snd1 (ENSFHEG00000004093)	ENSFHEG00000004102	si:dkey-5i3.5 (ENSFHEG00000004110)	ENSFHEG00000004116	impdh1b (ENSFHEG00000004178)	ENSFHEG00000004191	ENSFHEG00000004291	fam3c (ENSFHEG00000004353)	btg1 (ENSFHEG00000004367) #22	ENSFHEG00000004400	dcn (ENSFHEG00000004440) #25	lum (ENSFHEG00000004449) #26	kera (ENSFHEG00000004459) #27	epyc (ENSFHEG00000004613) #28	si:dkeyp-38g8.5 (ENSFHEG00000004625)	si:ch211-244b2.4 (ENSFHEG00000004642)	si:ch211-244b2.3 (ENSFHEG00000004656)	scyl2 (ENSFHEG00000004766)	ENSFHEG00000004783	tcp11l2 (ENSFHEG00000004788)	apaf1 (ENSFHEG00000004836)	anks1b (ENSFHEG00000005075)	uhrf1bp1l (ENSFHEG00000005121)	ENSFHEG00000005152
Sheepshead minnow	MODERN SPECIES	1168											ENSCVAG00000017267	impdh1b (ENSCVAG00000017253)	ENSCVAG00000017137	ENSCVAG00000017117	fam3c (ENSCVAG00000017107)	btg1 (ENSCVAG00000017093) #22	ENSCVAG00000017087	ENSCVAG00000017068 #25
Oryzias	ANCESTRAL SPECIES	20	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676.f	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00390000015968
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676.f	ENSGT01000000214676.e	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Indian medaka	MODERN SPECIES	2	sema3aa (ENSOMEG00000007029)	ENSOMEG00000006887	ENSOMEG00000006659	hgfa (ENSOMEG00000006634)	pax4 (ENSOMEG00000006589)	snd1 (ENSOMEG00000006406)	LRRC4 (ENSOMEG00000006324)	ENSOMEG00000006321	ENSOMEG00000006310	si:dkey-5i3.5 (ENSOMEG00000006302)	ENSOMEG00000006295	ENSOMEG00000006284	impdh1b (ENSOMEG00000006271)	ENSOMEG00000006249	fam3c (ENSOMEG00000006203)	btg1 (ENSOMEG00000006173) #22	ENSOMEG00000006163	dcn (ENSOMEG00000006148) #25	lum (ENSOMEG00000006096) #26	kera (ENSOMEG00000006086) #27	epyc (ENSOMEG00000006079) #28	si:dkeyp-38g8.5 (ENSOMEG00000000137)	si:ch211-244b2.4 (ENSOMEG00000006058)	ENSOMEG00000006048	ENSOMEG00000006032	scyl2 (ENSOMEG00000006012)	DEPDC4 (ENSOMEG00000005967)	tcp11l2 (ENSOMEG00000005951)	apaf1 (ENSOMEG00000000126)	anks1b (ENSOMEG00000005882)	uhrf1bp1l (ENSOMEG00000005823)
Javanese ricefish	MODERN SPECIES	15	prmt8b (ENSOJAG00000012190)	tspan11 (ENSOJAG00000012067)	ENSOJAG00000012058	ENSOJAG00000012011	cacna2d1a (ENSOJAG00000011975)	hgfa (ENSOJAG00000011910)	ENSOJAG00000011878	LRRC4 (ENSOJAG00000011873)	snd1 (ENSOJAG00000009781)	ENSOJAG00000009606	ENSOJAG00000009591	ENSOJAG00000009587	impdh1b (ENSOJAG00000009409)	ENSOJAG00000009356	fam3c (ENSOJAG00000009244)	btg1 (ENSOJAG00000009216) #22	ENSOJAG00000009190	dcn (ENSOJAG00000009156) #25	lum (ENSOJAG00000009146) #26	kera (ENSOJAG00000009135) #27	epyc (ENSOJAG00000009122) #28	si:ch211-244b2.4 (ENSOJAG00000009092)	ENSOJAG00000009045	ENSOJAG00000009030	scyl2 (ENSOJAG00000022587)	ENSOJAG00000022579	tcp11l2 (ENSOJAG00000022552)	apaf1 (ENSOJAG00000022532)	anks1b (ENSOJAG00000022495)	ENSOJAG00000022382	IKBIP (ENSOJAG00000022377)
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.d	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676.f	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00390000015968
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	52	mettl25 (ENSOSIG00000016243)	ccdc59 (ENSOSIG00000016247)	ENSOSIG00000016273	prmt8b (ENSOSIG00000016298)	tspan11 (ENSOSIG00000016529)	sema3aa (ENSOSIG00000016598)	ENSOSIG00000018373	hgfa (ENSOSIG00000018737)	ENSOSIG00000018746	snd1 (ENSOSIG00000018785)	LRRC4 (ENSOSIG00000019624)	ENSOSIG00000019625	impdh1b (ENSOSIG00000019664)	ENSOSIG00000019825	fam3c (ENSOSIG00000019832)	btg1 (ENSOSIG00000019835) #22	ENSOSIG00000019839	dcn (ENSOSIG00000019846) #25	lum (ENSOSIG00000019847) #26	kera (ENSOSIG00000019848) #27	epyc (ENSOSIG00000019850) #28	si:dkeyp-38g8.5 (ENSOSIG00000019852)	si:ch211-244b2.4 (ENSOSIG00000019857)	ENSOSIG00000019859	scyl2 (ENSOSIG00000019870)	ENSOSIG00000019878	tcp11l2 (ENSOSIG00000019881)	apaf1 (ENSOSIG00000019941)	anks1b (ENSOSIG00000020564)	uhrf1bp1l (ENSOSIG00000020583)	ENSOSIG00000020714
Chinese medaka	MODERN SPECIES	51	ccdc59 (ENSOSIG00000020236)	CRACR2A (ENSOSIG00000020243)	prmt8b (ENSOSIG00000020278)	sema3aa (ENSOSIG00000021042)	ENSOSIG00000021070	hgfa (ENSOSIG00000021164)	pax4 (ENSOSIG00000021168)	snd1 (ENSOSIG00000021258)	LRRC4 (ENSOSIG00000021276)	ENSOSIG00000021277	ENSOSIG00000021278	si:dkey-5i3.5 (ENSOSIG00000021280)	ENSOSIG00000021281	impdh1b (ENSOSIG00000021287)	fam3c (ENSOSIG00000021340)	btg1 (ENSOSIG00000021344) #22	ENSOSIG00000021347	dcn (ENSOSIG00000021349) #25	lum (ENSOSIG00000021350) #26	kera (ENSOSIG00000021352) #27	epyc (ENSOSIG00000021354) #28	si:dkeyp-38g8.5 (ENSOSIG00000021356)	si:ch211-244b2.4 (ENSOSIG00000021357)	ENSOSIG00000021361	scyl2 (ENSOSIG00000021363)	ENSOSIG00000021372	tcp11l2 (ENSOSIG00000021375)	apaf1 (ENSOSIG00000021425)	anks1b (ENSOSIG00000021498)	uhrf1bp1l (ENSOSIG00000021508)	IKBIP (ENSOSIG00000021511)
Japanese Medaka HdrR	MODERN SPECIES	15	tspan11 (ENSORLG00000014952)	sema3aa (ENSORLG00000015034)	ENSORLG00000015076	ENSORLG00000015164	ENSORLG00000025600	ENSORLG00000030537	ENSORLG00000015177	snd1 (ENSORLG00000015201)	LRRC4 (ENSORLG00000015207)	ENSORLG00000028186	lep-b (ENSORLG00000021942)	ENSORLG00000024290	impdh1b (ENSORLG00000015224)	ENSORLG00000015230	fam3c (ENSORLG00000015255)	btg1 (ENSORLG00000029614) #22	ENSORLG00000029439	ENSORLG00000026036	dcn (ENSORLG00000015308) #25	lum (ENSORLG00000015318) #26	kera (ENSORLG00000015326) #27	epyc (ENSORLG00000029785) #28	si:dkeyp-38g8.5 (ENSORLG00000015334)	si:ch211-244b2.4 (ENSORLG00000015345)	ENSORLG00000015352	scyl2 (ENSORLG00000015396)	ENSORLG00000015415	tcp11l2 (ENSORLG00000015425)	apaf1 (ENSORLG00000015449)	ENSORLG00000022959	ENSORLG00000025240
Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.g.b	ENSGT00940000177480.a	ENSGT00940000154572.h
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00940000167336	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00390000015968
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT01040000240400.c.b.a.a.b	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000182271	ENSGT00940000154572.h	ENSGT00600000084428.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT01040000240400.c.b.a.a.b	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000156759.b	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000182271	ENSGT00940000154572.h	ENSGT00600000084428.b
Haplochromini	ANCESTRAL SPECIES	9	ENSGT01040000240400.c.b.a.a.b	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00940000159260.h	ENSGT00510000047270	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT00940000164581.B	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000182271	ENSGT00940000154572.h	ENSGT00600000084428.b
Burton s mouthbrooder	MODERN SPECIES	385	ENSHBUG00000018789	tspan11 (ENSHBUG00000018804)	sema3aa (ENSHBUG00000018911)	ENSHBUG00000019024	cacna2d1a (ENSHBUG00000019038)	hgfa (ENSHBUG00000019052)	pax4 (ENSHBUG00000019061)	LRRC4 (ENSHBUG00000019076)	snd1 (ENSHBUG00000019135)	ENSHBUG00000019142	si:dkey-5i3.5 (ENSHBUG00000019150)	ENSHBUG00000019158	impdh1b (ENSHBUG00000019305)	ENSHBUG00000019350	fam3c (ENSHBUG00000019362)	btg1 (ENSHBUG00000019375) #22	ENSHBUG00000019386	dcn (ENSHBUG00000019392) #25	lum (ENSHBUG00000019397) #26	kera (ENSHBUG00000019407) #27	epyc (ENSHBUG00000000865) #28	si:dkeyp-38g8.5 (ENSHBUG00000000579)	si:ch211-244b2.4 (ENSHBUG00000019440)	si:ch211-244b2.3 (ENSHBUG00000019453)	scyl2 (ENSHBUG00000019473)	ENSHBUG00000019508	tcp11l2 (ENSHBUG00000019597)	apaf1 (ENSHBUG00000019631)
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT01040000240400.c.b.a.a.b	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00940000159260.h	ENSGT00510000047270	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000182271	ENSGT00940000154572.h	ENSGT00600000084428.b
P. nyererei	MODERN SPECIES	347	ENSPNYG00000000666	tspan11 (ENSPNYG00000000682)	sema3aa (ENSPNYG00000000710)	ENSPNYG00000000770	ENSPNYG00000000785	hgfa (ENSPNYG00000000796)	ENSPNYG00000000866	snd1 (ENSPNYG00000000932)	LRRC4 (ENSPNYG00000001024)	ENSPNYG00000001038	si:dkey-5i3.5 (ENSPNYG00000001056)	ENSPNYG00000001080	impdh1b (ENSPNYG00000001120)	ENSPNYG00000001182	fam3c (ENSPNYG00000001211)	btg1 (ENSPNYG00000001236) #22	ENSPNYG00000001247	dcn (ENSPNYG00000001271) #25	lum (ENSPNYG00000001280) #26	kera (ENSPNYG00000001289) #27	epyc (ENSPNYG00000001335) #28	si:ch211-244b2.4 (ENSPNYG00000001424)	ENSPNYG00000001439	scyl2 (ENSPNYG00000001469)	ENSPNYG00000001482	tcp11l2 (ENSPNYG00000001534)	apaf1 (ENSPNYG00000001602)	ENSPNYG00000001696	anks1b (ENSPNYG00000001726)	ENSPNYG00000001813	uhrf1bp1l (ENSPNYG00000001856)
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT01040000240400.c.b.a.a.b	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00940000159260.h	ENSGT00510000047270	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT00940000164581.B	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00390000015968
Zebra mbuna	MODERN SPECIES	1099	sema3aa (ENSMZEG00005005876)	ENSMZEG00005005817	ENSMZEG00005005790	hgfa (ENSMZEG00005005777)	ENSMZEG00005005760	ENSMZEG00005005747	LRRC4 (ENSMZEG00005005741)	snd1 (ENSMZEG00005005681)	ENSMZEG00005005662	ENSMZEG00005005652	si:dkey-5i3.5 (ENSMZEG00005005643)	ENSMZEG00005005637	impdh1b (ENSMZEG00005005561)	ENSMZEG00005005521	fam3c (ENSMZEG00005005500)	btg1 (ENSMZEG00005005485) #22	ENSMZEG00005005478	dcn (ENSMZEG00005005461) #25	lum (ENSMZEG00005005454) #26	kera (ENSMZEG00005005437) #27	epyc (ENSMZEG00005005416) #28	si:dkeyp-38g8.5 (ENSMZEG00005005404)	si:ch211-244b2.4 (ENSMZEG00005005397)	si:ch211-244b2.3 (ENSMZEG00005005381)	scyl2 (ENSMZEG00005005348)	ENSMZEG00005005331	tcp11l2 (ENSMZEG00005005314)	apaf1 (ENSMZEG00005005271)	anks1b (ENSMZEG00005005137)	uhrf1bp1l (ENSMZEG00005005085)	ENSMZEG00005005068
Eastern happy	MODERN SPECIES	8	tspan11 (ENSACLG00000023552)	sema3aa (ENSACLG00000023484)	ENSACLG00000023166	cacna2d1a (ENSACLG00000023002)	hgfa (ENSACLG00000022967)	pax4 (ENSACLG00000022952)	LRRC4 (ENSACLG00000022949)	snd1 (ENSACLG00000022897)	ENSACLG00000022802	si:dkey-5i3.5 (ENSACLG00000022784)	ENSACLG00000022758	impdh1b (ENSACLG00000022668)	ENSACLG00000022656	ENSACLG00000022622	fam3c (ENSACLG00000022525)	btg1 (ENSACLG00000022519) #22	ENSACLG00000022513	dcn (ENSACLG00000022503) #25	lum (ENSACLG00000022489) #26	kera (ENSACLG00000022464) #27	epyc (ENSACLG00000022420) #28	si:dkeyp-38g8.5 (ENSACLG00000022438)	si:ch211-244b2.4 (ENSACLG00000022403)	si:ch211-244b2.3 (ENSACLG00000022380)	scyl2 (ENSACLG00000022310)	ENSACLG00000022256	tcp11l2 (ENSACLG00000022214)	apaf1 (ENSACLG00000022176)	ENSACLG00000022153	anks1b (ENSACLG00000022062)	uhrf1bp1l (ENSACLG00000021952)
Lyretail cichlid	MODERN SPECIES	291	ENSNBRG00000005998	tspan11 (ENSNBRG00000006004)	sema3aa (ENSNBRG00000006039)	ENSNBRG00000006103	ENSNBRG00000006276	hgfa (ENSNBRG00000006504)	ENSNBRG00000006652	snd1 (ENSNBRG00000006681)	LRRC4 (ENSNBRG00000006717)	ENSNBRG00000006741	si:dkey-5i3.5 (ENSNBRG00000006761)	ENSNBRG00000006765	impdh1b (ENSNBRG00000006793)	ENSNBRG00000006818	fam3c (ENSNBRG00000006867)	btg1 (ENSNBRG00000006972) #22	ENSNBRG00000006982	dcn (ENSNBRG00000007021) #25	lum (ENSNBRG00000007027) #26	kera (ENSNBRG00000007031) #27	epyc (ENSNBRG00000007038) #28	si:dkeyp-38g8.5 (ENSNBRG00000007068)	si:ch211-244b2.4 (ENSNBRG00000007103)	ENSNBRG00000007125	scyl2 (ENSNBRG00000007169)	ENSNBRG00000007440	tcp11l2 (ENSNBRG00000007474)	apaf1 (ENSNBRG00000007523)	ENSNBRG00000008092	anks1b (ENSNBRG00000008153)	uhrf1bp1l (ENSNBRG00000008275)
Nile tilapia	MODERN SPECIES	8	sema3aa (ENSONIG00000011531)	ENSONIG00000011526	cacna2d1a (ENSONIG00000011520)	hgfa (ENSONIG00000011505)	ENSONIG00000041328	pax4 (ENSONIG00000011503)	snd1 (ENSONIG00000011481)	LRRC4 (ENSONIG00000029412)	ENSONIG00000011480	ENSONIG00000037271	si:dkey-5i3.5 (ENSONIG00000011479)	ENSONIG00000031172	impdh1b (ENSONIG00000011474)	ENSONIG00000011468	fam3c (ENSONIG00000011462)	btg1 (ENSONIG00000042934) #22	ENSONIG00000011456	dcn (ENSONIG00000034299) #25	lum (ENSONIG00000037870) #26	kera (ENSONIG00000011450) #27	epyc (ENSONIG00000011449) #28	si:dkeyp-38g8.5 (ENSONIG00000011448)	si:ch211-244b2.4 (ENSONIG00000011444)	si:ch211-244b2.3 (ENSONIG00000030041)	scyl2 (ENSONIG00000011440)	ENSONIG00000011437	tcp11l2 (ENSONIG00000011431)	apaf1 (ENSONIG00000011426)	ENSONIG00000039975	anks1b (ENSONIG00000011422)	uhrf1bp1l (ENSONIG00000011416)
Midas cichlid	MODERN SPECIES	30	tspan11 (ENSACIG00000003904)	sema3aa (ENSACIG00000003852)	ENSACIG00000003840	ENSACIG00000003780	ENSACIG00000003758	cacna2d1a (ENSACIG00000003681)	hgfa (ENSACIG00000003632)	ENSACIG00000003608	LRRC4 (ENSACIG00000003594)	snd1 (ENSACIG00000003551)	ENSACIG00000003535	si:dkey-5i3.5 (ENSACIG00000003531)	impdh1b (ENSACIG00000003493)	ENSACIG00000003468	fam3c (ENSACIG00000003446)	btg1 (ENSACIG00000003434) #22	ENSACIG00000003426	dcn (ENSACIG00000003406) #25	lum (ENSACIG00000003369) #26	kera (ENSACIG00000003343) #27	epyc (ENSACIG00000003231) #28	si:dkeyp-38g8.5 (ENSACIG00000003215)	ENSACIG00000003171	scyl2 (ENSACIG00000003116)	DEPDC4 (ENSACIG00000003093)	tcp11l2 (ENSACIG00000003022)	ENSACIG00000003006	apaf1 (ENSACIG00000002681)	anks1b (ENSACIG00000002599)	uhrf1bp1l (ENSACIG00000002419)	ENSACIG00000002402
Pomacentridae	ANCESTRAL SPECIES	53	ENSGT00940000167336	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270.f	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.g.b	ENSGT00940000177480.a	ENSGT00940000154572.h
Pomacentridae_A	ANCESTRAL SPECIES	23	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb.e	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270.f	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.g.b	ENSGT00940000177480.a	ENSGT00940000154572.h
Amphiprion	ANCESTRAL SPECIES	53	ENSGT01040000240400.c.b.a.a.b.a	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb.e	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270.f	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00390000015968
Clown anemonefish	MODERN SPECIES	1693										ENSAOCG00000009240	si:dkey-5i3.5 (ENSAOCG00000009253)	ENSAOCG00000009264	ENSAOCG00000009287	impdh1b (ENSAOCG00000009335)	fam3c (ENSAOCG00000009388)	btg1 (ENSAOCG00000009401) #22	ENSAOCG00000000572	dcn (ENSAOCG00000009447) #25	lum (ENSAOCG00000009459) #26	kera (ENSAOCG00000009471) #27	epyc (ENSAOCG00000009498) #28	si:dkeyp-38g8.5 (ENSAOCG00000009552)	si:ch211-244b2.4 (ENSAOCG00000009571)	ENSAOCG00000009597	scyl2 (ENSAOCG00000009694)	ENSAOCG00000009736	tcp11l2 (ENSAOCG00000000601)	apaf1 (ENSAOCG00000009836)	ENSAOCG00000009912
Orange clownfish	MODERN SPECIES	13	tspan11 (ENSAPEG00000006557)	sema3aa (ENSAPEG00000006668)	ENSAPEG00000006747	cacna2d1a (ENSAPEG00000006854)	ENSAPEG00000006918	hgfa (ENSAPEG00000006934)	pax4 (ENSAPEG00000007008)	snd1 (ENSAPEG00000007067)	LRRC4 (ENSAPEG00000007177)	ENSAPEG00000007244	si:dkey-5i3.5 (ENSAPEG00000007262)	ENSAPEG00000007277	impdh1b (ENSAPEG00000007301)	ENSAPEG00000007354	fam3c (ENSAPEG00000007370)	btg1 (ENSAPEG00000007416) #22	ENSAPEG00000007430	dcn (ENSAPEG00000007455) #25	lum (ENSAPEG00000007485) #26	kera (ENSAPEG00000007496) #27	epyc (ENSAPEG00000007508) #28	si:dkeyp-38g8.5 (ENSAPEG00000007561)	si:ch211-244b2.4 (ENSAPEG00000007620)	ENSAPEG00000007632	scyl2 (ENSAPEG00000007681)	ENSAPEG00000007791	tcp11l2 (ENSAPEG00000007824)	apaf1 (ENSAPEG00000007835)	anks1b (ENSAPEG00000007920)	uhrf1bp1l (ENSAPEG00000008081)	ENSAPEG00000008352
Spiny chromis	MODERN SPECIES	78					cacna2d1a (ENSAPOG00000000467)	hgfa (ENSAPOG00000017488)	pax4 (ENSAPOG00000017552)	LRRC4 (ENSAPOG00000017571)	snd1 (ENSAPOG00000017599)	ENSAPOG00000017648	si:dkey-5i3.5 (ENSAPOG00000017658)	ENSAPOG00000017668	impdh1b (ENSAPOG00000017764)	ENSAPOG00000017820	fam3c (ENSAPOG00000017879)	btg1 (ENSAPOG00000017895) #22	ENSAPOG00000017908	dcn (ENSAPOG00000017942) #25	lum (ENSAPOG00000017948) #26	kera (ENSAPOG00000017975) #27	epyc (ENSAPOG00000018016) #28	si:dkeyp-38g8.5 (ENSAPOG00000018023)	si:ch211-244b2.4 (ENSAPOG00000018028)	ENSAPOG00000018036	scyl2 (ENSAPOG00000018066)	ENSAPOG00000018117	tcp11l2 (ENSAPOG00000018129)	apaf1 (ENSAPOG00000018493)	ENSAPOG00000018515	ENSAPOG00000018537	ENSAPOG00000018558
Bicolor damselfish	MODERN SPECIES	372										ENSSPAG00000011784	si:dkey-5i3.5 (ENSSPAG00000011791)	ENSSPAG00000011795	impdh1b (ENSSPAG00000011815)	ENSSPAG00000011910	fam3c (ENSSPAG00000011924)	btg1 (ENSSPAG00000011935) #22	ENSSPAG00000011945	dcn (ENSSPAG00000011955) #25	lum (ENSSPAG00000011980) #26	kera (ENSSPAG00000011988) #27	epyc (ENSSPAG00000011995) #28	si:dkeyp-38g8.5 (ENSSPAG00000012016)	si:ch211-244b2.4 (ENSSPAG00000012034)	ENSSPAG00000012067	scyl2 (ENSSPAG00000012110)	ENSSPAG00000012194	tcp11l2 (ENSSPAG00000012228)	apaf1 (ENSSPAG00000012262)
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00390000015805.a	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00940000155867.a.b	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000156759.b	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00390000015968	ENSGT00500000045001
Fugu	MODERN SPECIES	9	tspan11 (ENSTRUG00000015081)	ENSTRUG00000029430	sema3aa (ENSTRUG00000014935)	ENSTRUG00000014864	cacna2d1a (ENSTRUG00000014542)	hgfa (ENSTRUG00000014427)	ENSTRUG00000014412	ENSTRUG00000020292	LRRC4 (ENSTRUG00000014390)	snd1 (ENSTRUG00000014067)	si:dkey-5i3.5 (ENSTRUG00000024951)	ENSTRUG00000024191	ENSTRUG00000026379	impdh1b (ENSTRUG00000014021)	fam3c (ENSTRUG00000013911)	btg1 (ENSTRUG00000032692) #22	ENSTRUG00000013884	dcn (ENSTRUG00000013771) #25	lum (ENSTRUG00000025547) #26	kera (ENSTRUG00000013697) #27	epyc (ENSTRUG00000013658) #28	ENSTRUG00000022466	scyl2 (ENSTRUG00000013597)	ENSTRUG00000013501	tcp11l2 (ENSTRUG00000013371)	apaf1 (ENSTRUG00000013192)	anks1b (ENSTRUG00000013069)	uhrf1bp1l (ENSTRUG00000012937)	ENSTRUG00000012913	ENSTRUG00000023311	arfgap3 (ENSTRUG00000012812)
Tetraodon	MODERN SPECIES	11	ENSTNIG00000001448	ENSTNIG00000011026	tspan11 (ENSTNIG00000011025)	sema3aa (ENSTNIG00000011024)	ENSTNIG00000011023	cacna2d1a (ENSTNIG00000011022)	hgfa (ENSTNIG00000011021)	ENSTNIG00000000660	ENSTNIG00000011020	LRRC4 (ENSTNIG00000011018)	snd1 (ENSTNIG00000011019)	si:dkey-5i3.5 (ENSTNIG00000011017)	impdh1b (ENSTNIG00000011016)	ENSTNIG00000011015	fam3c (ENSTNIG00000011014)	btg1 (ENSTNIG00000011013) #22	dcn (ENSTNIG00000011012) #25	lum (ENSTNIG00000001124) #26	kera (ENSTNIG00000011011) #27	epyc (ENSTNIG00000011010) #28	ENSTNIG00000011009	tcp11l2 (ENSTNIG00000011008)	apaf1 (ENSTNIG00000011007)	anks1b (ENSTNIG00000018849)	uhrf1bp1l (ENSTNIG00000011426)	ENSTNIG00000011425	ENSTNIG00000000798	arfgap3 (ENSTNIG00000011424)	pacsin2 (ENSTNIG00000011423)	ttll1 (ENSTNIG00000011422)	mcat (ENSTNIG00000011421)
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT01040000240400.c.b.a.a.b.c	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Ballan wrasse	MODERN SPECIES	288	tnnt2c (ENSLBEG00000021670)	ENSLBEG00000021657	IKBIP (ENSLBEG00000021638)	arfgap3 (ENSLBEG00000021563)	pacsin2 (ENSLBEG00000021510)	ttll1 (ENSLBEG00000021464)	ENSLBEG00000021449	mcat (ENSLBEG00000021435)	ENSLBEG00000021405	ENSLBEG00000021382	ENSLBEG00000021362	washc3 (ENSLBEG00000021335)	dram1 (ENSLBEG00000021279)	ENSLBEG00000021230	fam3c (ENSLBEG00000021194)	btg1 (ENSLBEG00000021173) #22
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT01040000240400.c.b.a.a.b.c	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT01040000240400.c.b.a.a.b.c	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Gilthead seabream	MODERN SPECIES	5	ENSSAUG00010027444	tspan11 (ENSSAUG00010027445)	sema3aa (ENSSAUG00010027449)	ENSSAUG00010027511	cacna2d1a (ENSSAUG00010027525)	hgfa (ENSSAUG00010027570)	pax4 (ENSSAUG00010027572)	snd1 (ENSSAUG00010027589)	LRRC4 (ENSSAUG00010027596)	ENSSAUG00010027598	si:dkey-5i3.5 (ENSSAUG00010011949)	ENSSAUG00010011954	impdh1b (ENSSAUG00010011966)	ENSSAUG00010012091	fam3c (ENSSAUG00010012092)	btg1 (ENSSAUG00010012097) #22	ENSSAUG00010012099	dcn (ENSSAUG00010012101) #25	lum (ENSSAUG00010012103) #26	kera (ENSSAUG00010012104) #27	epyc (ENSSAUG00010012106) #28	si:dkeyp-38g8.5 (ENSSAUG00010012108)	si:ch211-244b2.4 (ENSSAUG00010012111)	ENSSAUG00010012115	scyl2 (ENSSAUG00010012122)	ENSSAUG00010012145	FUT9 (ENSSAUG00010012147)	ENSSAUG00010012149	FUT9 (ENSSAUG00010012150)	FUT9 (ENSSAUG00010012151)	FUT9 (ENSSAUG00010012153)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT01040000240400.c.b.a.a.b.c	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000164581.A.a.a	ENSGT00940000164581.B	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00950000183116.a.a
Large yellow croaker	MODERN SPECIES	491										ENSLCRG00005006167	si:dkey-5i3.5 (ENSLCRG00005006168)	ENSLCRG00005006169	impdh1b (ENSLCRG00005006179)	ENSLCRG00005006296	fam3c (ENSLCRG00005006303)	btg1 (ENSLCRG00005006306) #22	ENSLCRG00005006307	dcn (ENSLCRG00005006311) #25	lum (ENSLCRG00005006313) #26	kera (ENSLCRG00005006315) #27	epyc (ENSLCRG00005006316) #28	si:ch211-244b2.4 (ENSLCRG00005006321)	si:ch211-244b2.3 (ENSLCRG00005006324)	scyl2 (ENSLCRG00005006328)	ENSLCRG00005006355	ENSLCRG00005006364	tcp11l2 (ENSLCRG00005006367)	apaf1 (ENSLCRG00005006390)	anks1b (ENSLCRG00005006505)	uhrf1bp1l (ENSLCRG00005006536)	ENSLCRG00005007711
European seabass	MODERN SPECIES	23	ENSDLAG00005033332	tspan11 (ENSDLAG00005024081)	sema3aa (ENSDLAG00005024182)	ENSDLAG00005024958	cacna2d1a (ENSDLAG00005025074)	hgfa (ENSDLAG00005025628)	pax4 (ENSDLAG00005025639)	snd1 (ENSDLAG00005025651)	ENSDLAG00005025707	ENSDLAG00005031035	ENSDLAG00005025710	ENSDLAG00005025711	ENSDLAG00005025712	ENSDLAG00005025730	ENSDLAG00005025810	btg1 (ENSDLAG00005029234) #22	ENSDLAG00005025821	ENSDLAG00005025823	dcn (ENSDLAG00005025824) #25	lum (ENSDLAG00005025826) #26	kera (ENSDLAG00005025828) #27	epyc (ENSDLAG00005025831) #28	si:ch211-244b2.4 (ENSDLAG00005025840)	ENSDLAG00005025844	scyl2 (ENSDLAG00005032025)	ENSDLAG00005025862	apaf1 (ENSDLAG00005025867)	ENSDLAG00005025898	uhrf1bp1l (ENSDLAG00005025914)	ENSDLAG00005025948	ENSDLAG00005025949
Perciformes	ANCESTRAL SPECIES	18	ENSGT01040000240400.c.b.a.a.b.c	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000156759.b	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00940000155867.a.b	ENSGT01040000240400.c.b.a.a.b.c	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000156759.b	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Channel bull blenny	MODERN SPECIES	15	tspan11 (ENSCGOG00000013698)	sema3aa (ENSCGOG00000011836)	ENSCGOG00000022327	cacna2d1a (ENSCGOG00000022290)	hgfa (ENSCGOG00000022277)	ENSCGOG00000022275	ENSCGOG00000022274	LRRC4 (ENSCGOG00000022273)	snd1 (ENSCGOG00000021564)	ENSCGOG00000021531	si:dkey-5i3.5 (ENSCGOG00000021529)	ENSCGOG00000021528	impdh1b (ENSCGOG00000019758)	ENSCGOG00000019702	fam3c (ENSCGOG00000019696)	btg1 (ENSCGOG00000019694) #22	ENSCGOG00000019675	dcn (ENSCGOG00000019639) #25	lum (ENSCGOG00000019634) #26	kera (ENSCGOG00000019628) #27	epyc (ENSCGOG00000019622) #28	si:dkeyp-38g8.5 (ENSCGOG00000019621)	ENSCGOG00000019619	washc3 (ENSCGOG00000019618)	ENSCGOG00000019606	ENSCGOG00000019585	ENSCGOG00000019583	mcat (ENSCGOG00000019581)	ttll1 (ENSCGOG00000019575)	pacsin2 (ENSCGOG00000019377)	arfgap3 (ENSCGOG00000019165)
Pike perch	MODERN SPECIES	28	prmt8b (ENSSLUG00000001990)	ENSSLUG00000002065	tspan11 (ENSSLUG00000002072)	sema3aa (ENSSLUG00000002250)	ENSSLUG00000004427	cacna2d1a (ENSSLUG00000004742)	hgfa (ENSSLUG00000009514)	ENSSLUG00000009539	snd1 (ENSSLUG00000009620)	LRRC4 (ENSSLUG00000011583)	si:dkey-5i3.5 (ENSSLUG00000011591)	PRRT4 (ENSSLUG00000011597)	impdh1b (ENSSLUG00000011693)	ENSSLUG00000013391	fam3c (ENSSLUG00000013431)	btg1 (ENSSLUG00000013451) #22	ENSSLUG00000013470	dcn (ENSSLUG00000013521) #25	lum (ENSSLUG00000013524) #26	kera (ENSSLUG00000013525) #27	epyc (ENSSLUG00000013536) #28	si:dkeyp-38g8.5 (ENSSLUG00000013540)	si:ch211-244b2.4 (ENSSLUG00000013543)	ENSSLUG00000013547	scyl2 (ENSSLUG00000013558)	DEPDC4 (ENSSLUG00000013571)	FUT9 (ENSSLUG00000013575)	tcp11l2 (ENSSLUG00000013639)	apaf1 (ENSSLUG00000013724)	anks1b (ENSSLUG00000014070)	uhrf1bp1l (ENSSLUG00000014381)
Cottioidei	ANCESTRAL SPECIES	19	ENSGT01040000240400.c.b.a.a.b.c	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000156759.b	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00940000171480	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h
Stickleback	MODERN SPECIES	3	ENSGACG00000019776	tspan11 (ENSGACG00000019777)	sema3aa (ENSGACG00000019783)	ENSGACG00000019785	cacna2d1a (ENSGACG00000019787)	ENSGACG00000019789	hgfa (ENSGACG00000019791)	ENSGACG00000019792	snd1 (ENSGACG00000019793)	LRRC4 (ENSGACG00000019795)	si:dkey-5i3.5 (ENSGACG00000019796)	impdh1b (ENSGACG00000019797)	ENSGACG00000019800	ENSGACG00000019801	fam3c (ENSGACG00000019804)	btg1 (ENSGACG00000019805) #22	dcn (ENSGACG00000019806) #25	lum (ENSGACG00000019814) #26	kera (ENSGACG00000019816) #27	epyc (ENSGACG00000019817) #28	si:ch211-244b2.4 (ENSGACG00000019820)	ENSGACG00000019823	scyl2 (ENSGACG00000019825)	ENSGACG00000019827	FUT9 (ENSGACG00000019829)	FUT9 (ENSGACG00000019830)	FUT9 (ENSGACG00000019831)	ENSGACG00000019832	FUT9 (ENSGACG00000019833)	FUT9 (ENSGACG00000019835)	FUT9 (ENSGACG00000019836)
Lumpfish	MODERN SPECIES	15	ASCL4 (ENSCLMG00005016191)	ENSCLMG00005016190	sema3aa (ENSCLMG00005015353)	ENSCLMG00005015345	cacna2d1a (ENSCLMG00005015343)	ENSCLMG00005015342	pax4 (ENSCLMG00005015261)	LRRC4 (ENSCLMG00005015257)	snd1 (ENSCLMG00005012045)	ENSCLMG00005012035	ENSCLMG00005012034	ENSCLMG00005012033	impdh1b (ENSCLMG00005010639)	ENSCLMG00005010623	fam3c (ENSCLMG00005010620)	btg1 (ENSCLMG00005010618) #22	ENSCLMG00005010615	dcn (ENSCLMG00005010613) #25	lum (ENSCLMG00005010610) #26	kera (ENSCLMG00005010608) #27	epyc (ENSCLMG00005010607) #28	si:dkeyp-38g8.5 (ENSCLMG00005010605)	ENSCLMG00005010604	ENSCLMG00005010600	ENSCLMG00005010584	ENSCLMG00005022740	FUT9 (ENSCLMG00005022735)	tcp11l2 (ENSCLMG00005022733)	ppp1r12a (ENSCLMG00005022725)	pawr (ENSCLMG00005022721)	ENSCLMG00005022719
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT00990000205707	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00390000015805.a	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00940000167336	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000156759.b	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT00990000205707	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00950000183116.a.a	ENSGT00390000015968
Zig-zag eel	MODERN SPECIES	15	tspan11 (ENSMAMG00000027467)	sema3aa (ENSMAMG00000011440)	ENSMAMG00000024590	ENSMAMG00000011477	cacna2d1a (ENSMAMG00000011694)	hgfa (ENSMAMG00000011726)	ENSMAMG00000024898	snd1 (ENSMAMG00000011739)	ENSMAMG00000011765	ENSMAMG00000011786	ENSMAMG00000011806	ENSMAMG00000011818	ENSMAMG00000011828	ENSMAMG00000011982	ENSMAMG00000012008	btg1 (ENSMAMG00000012039) #22	ENSMAMG00000012054	dcn (ENSMAMG00000012078) #25	lum (ENSMAMG00000012085) #26	kera (ENSMAMG00000012100) #27	epyc (ENSMAMG00000012105) #28	si:ch211-244b2.4 (ENSMAMG00000012121)	ENSMAMG00000026388	ENSMAMG00000012148	ENSMAMG00000012235	ENSMAMG00000012270	apaf1 (ENSMAMG00000012291)	ENSMAMG00000012379	ENSMAMG00000012493	uhrf1bp1l (ENSMAMG00000012506)	ENSMAMG00000012548
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000156759.b	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT00990000205707	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b	ENSGT00950000183116.a.a	ENSGT00390000015968
Climbing perch	MODERN SPECIES	14	ENSATEG00000018086	tspan11 (ENSATEG00000027100)	ENSATEG00000028344	ENSATEG00000025588	cacna2d1a (ENSATEG00000018264)	hgfa (ENSATEG00000018339)	ENSATEG00000018371	snd1 (ENSATEG00000018475)	ENSATEG00000018557	ENSATEG00000018588	ENSATEG00000029683	ENSATEG00000018613	ENSATEG00000018624	ENSATEG00000018692	ENSATEG00000018715	btg1 (ENSATEG00000027464) #22	ENSATEG00000018736	dcn (ENSATEG00000018748) #25	lum (ENSATEG00000018779) #26	kera (ENSATEG00000018788) #27	epyc (ENSATEG00000018806) #28	si:ch211-244b2.4 (ENSATEG00000018837)	si:ch211-244b2.3 (ENSATEG00000018871)	scyl2 (ENSATEG00000018903)	ENSATEG00000018962	ENSATEG00000018990	apaf1 (ENSATEG00000019013)	ENSATEG00000019046	ENSATEG00000019162	uhrf1bp1l (ENSATEG00000019174)	ENSATEG00000019201
Siamese fighting fish	MODERN SPECIES	20	prmt8b (ENSBSLG00000026516)	ENSBSLG00000026529	tspan11 (ENSBSLG00000026530)	sema3aa (ENSBSLG00000026538)	cacna2d1a (ENSBSLG00000026569)	hgfa (ENSBSLG00000026581)	ENSBSLG00000026582	snd1 (ENSBSLG00000008385)	LRRC4 (ENSBSLG00000009577)	si:dkey-5i3.5 (ENSBSLG00000009589)	PRRT4 (ENSBSLG00000009687)	impdh1b (ENSBSLG00000009792)	ENSBSLG00000010306	ENSBSLG00000010315	fam3c (ENSBSLG00000010343)	btg1 (ENSBSLG00000010351) #22	ENSBSLG00000010590	dcn (ENSBSLG00000010636) #25	lum (ENSBSLG00000010713) #26	kera (ENSBSLG00000010731) #27	epyc (ENSBSLG00000010748) #28	si:ch211-244b2.4 (ENSBSLG00000010787)	ENSBSLG00000010862	scyl2 (ENSBSLG00000010899)	ENSBSLG00000010973	tcp11l2 (ENSBSLG00000010985)	apaf1 (ENSBSLG00000011042)	anks1b (ENSBSLG00000011808)	uhrf1bp1l (ENSBSLG00000012485)	ENSBSLG00000012696	ENSBSLG00000012701
Carangaria	ANCESTRAL SPECIES	22	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT00990000205707	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00390000015805.a	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00940000159260.h	ENSGT00510000047270	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00950000183116.a.a
Barramundi perch	MODERN SPECIES	320											ENSLCAG00010015427	impdh1b (ENSLCAG00010015454)	ENSLCAG00010015589	ENSLCAG00010015592	fam3c (ENSLCAG00010015595)	btg1 (ENSLCAG00010015599) #22	ENSLCAG00010015602	dcn (ENSLCAG00010015605) #25	lum (ENSLCAG00010015609) #26	kera (ENSLCAG00010015612) #27	epyc (ENSLCAG00010015616) #28	si:ch211-244b2.4 (ENSLCAG00010015621)	ENSLCAG00010015627	scyl2 (ENSLCAG00010015638)	ENSLCAG00010015660	ft1 (ENSLCAG00010015665)	tcp11l2 (ENSLCAG00010015670)	apaf1 (ENSLCAG00010015728)
Seriola	ANCESTRAL SPECIES	9	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000177670	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000156759.b	ENSGT00940000165785	ENSGT00940000159260.h	ENSGT00510000047270	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.h	ENSGT00600000084428.b
Greater amberjack	MODERN SPECIES	60	tspan11 (ENSSDUG00000003042)	sema3aa (ENSSDUG00000002963)	ENSSDUG00000002932	ENSSDUG00000002909	cacna2d1a (ENSSDUG00000002864)	hgfa (ENSSDUG00000002813)	ENSSDUG00000002799	LRRC4 (ENSSDUG00000002786)	snd1 (ENSSDUG00000002699)	ENSSDUG00000002653	si:dkey-5i3.5 (ENSSDUG00000002645)	ENSSDUG00000002636	impdh1b (ENSSDUG00000002584)	ENSSDUG00000002506	fam3c (ENSSDUG00000002419)	btg1 (ENSSDUG00000002395) #22	dcn (ENSSDUG00000002362) #25	ENSSDUG00000002068	lum (ENSSDUG00000002031) #26	kera (ENSSDUG00000002021) #27	epyc (ENSSDUG00000002000) #28	si:dkeyp-38g8.5 (ENSSDUG00000001977)	si:ch211-244b2.4 (ENSSDUG00000001958)	si:ch211-244b2.3 (ENSSDUG00000001944)	scyl2 (ENSSDUG00000001846)	ENSSDUG00000001819	FUT9 (ENSSDUG00000001785)	FUT9 (ENSSDUG00000001739)	tcp11l2 (ENSSDUG00000001701)	apaf1 (ENSSDUG00000001603)	anks1b (ENSSDUG00000001484)
Yellowtail amberjack	MODERN SPECIES	2783										ENSSLDG00000020226	si:dkey-5i3.5 (ENSSLDG00000020234)	ENSSLDG00000020241	impdh1b (ENSSLDG00000020252)	ENSSLDG00000020323	fam3c (ENSSLDG00000020374)	btg1 (ENSSLDG00000020401) #22	ENSSLDG00000020414	dcn (ENSSLDG00000020428) #25	lum (ENSSLDG00000020452) #26	kera (ENSSLDG00000020461) #27	epyc (ENSSLDG00000020475) #28	si:dkeyp-38g8.5 (ENSSLDG00000020484)	si:ch211-244b2.4 (ENSSLDG00000020508)	ENSSLDG00000020544	scyl2 (ENSSLDG00000020602)	DEPDC4 (ENSSLDG00000020699)	FUT9 (ENSSLDG00000020719)	FUT9 (ENSSLDG00000020741)	tcp11l2 (ENSSLDG00000020756)	apaf1 (ENSSLDG00000020771)	anks1b (ENSSLDG00000020801)
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00940000167336	ENSGT01030000235313	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT01030000234865	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT00990000205707	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT00940000164581.B	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b.m	ENSGT00940000157835	ENSGT00940000157710	ENSGT00940000154572.g.b
Tongue sole	MODERN SPECIES	18	LRCH3 (ENSCSEG00000006184)	rpl35a (ENSCSEG00000006207)	rnpepl1 (ENSCSEG00000006216)	ENSCSEG00000006219	mmp23bb (ENSCSEG00000006231)	SERP1 (ENSCSEG00000006236)	eif2a (ENSCSEG00000006247)	tsen34 (ENSCSEG00000006278)	clrn1 (ENSCSEG00000006287)	ENSCSEG00000006289	si:dkey-5i3.5 (ENSCSEG00000006293)	ENSCSEG00000006297	impdh1b (ENSCSEG00000006303)	ENSCSEG00000006326	fam3c (ENSCSEG00000006349)	btg1 (ENSCSEG00000006365) #22	ENSCSEG00000006371	dcn (ENSCSEG00000006390) #25	lum (ENSCSEG00000006414) #26	kera (ENSCSEG00000006422) #27	ENSCSEG00000006424	epyc (ENSCSEG00000006428) #28	si:dkeyp-38g8.5 (ENSCSEG00000006433)	ENSCSEG00000006438	scyl2 (ENSCSEG00000006450)	FUT9 (ENSCSEG00000006483)	FUT9 (ENSCSEG00000006487)	FUT9 (ENSCSEG00000006489)	tcp11l2 (ENSCSEG00000006496)	apaf1 (ENSCSEG00000006505)	ENSCSEG00000006543
Turbot	MODERN SPECIES	11	sema3aa (ENSSMAG00000001436)	ENSSMAG00000001530	cacna2d1a (ENSSMAG00000001768)	hgfa (ENSSMAG00000001813)	ENSSMAG00000001900	snd1 (ENSSMAG00000001932)	ENSSMAG00000002020	ENSSMAG00000028564	ENSSMAG00000002041	ENSSMAG00000024437	ENSSMAG00000002059	ENSSMAG00000025577	ENSSMAG00000002204	ENSSMAG00000002216	ENSSMAG00000002244	btg1 (ENSSMAG00000034290) #22	ENSSMAG00000002295	dcn (ENSSMAG00000002300) #25	lum (ENSSMAG00000002317) #26	kera (ENSSMAG00000002343) #27	epyc (ENSSMAG00000002361) #28	si:dkeyp-38g8.5 (ENSSMAG00000002384)	si:ch211-244b2.4 (ENSSMAG00000002425)	si:ch211-244b2.3 (ENSSMAG00000002442)	scyl2 (ENSSMAG00000002554)	ENSSMAG00000002674	ENSSMAG00000002702	ENSSMAG00000002712	apaf1 (ENSSMAG00000002753)	ENSSMAG00000002919	uhrf1bp1l (ENSSMAG00000003107)
Cod	MODERN SPECIES	10	tspan11 (ENSGMOG00000018762)	sema3aa (ENSGMOG00000018773)	ENSGMOG00000022391	cacna2d1a (ENSGMOG00000018874)	hgfa (ENSGMOG00000018906)	pax4 (ENSGMOG00000018922)	snd1 (ENSGMOG00000018932)	ENSGMOG00000029925	ENSGMOG00000023616	ENSGMOG00000028590	ENSGMOG00000024197	ENSGMOG00000000331	ENSGMOG00000025444	ENSGMOG00000000346	ENSGMOG00000000352	btg1 (ENSGMOG00000037023) #22	ENSGMOG00000030692	dcn (ENSGMOG00000012684) #25	kera (ENSGMOG00000012686) #27	epyc (ENSGMOG00000012689) #28	si:dkeyp-38g8.5 (ENSGMOG00000034180)	FGD6 (ENSGMOG00000002085)	VEZT (ENSGMOG00000002049)	METAP2 (ENSGMOG00000002039)	USP44 (ENSGMOG00000031024)	ENSGMOG00000012925	ENSGMOG00000012934	ENSGMOG00000012943	ENSGMOG00000012951	ENSGMOG00000025875	CACNA2D4 (ENSGMOG00000012957)
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00940000161249	ENSGT00940000167336	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000155209.mb	ENSGT00940000156019.c.b	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h	ENSGT00990000206730	ENSGT00530000064743.b	ENSGT00730000111591.b	ENSGT00940000154156.c.b	ENSGT00990000205707	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a	ENSGT01000000214676	ENSGT00880000138031	ENSGT00950000182976.a.a	ENSGT00940000155095.i.b.b	ENSGT00940000157835	ENSGT00390000018647	ENSGT00940000157710	ENSGT00940000154572.g.a
Salmoninae	ANCESTRAL SPECIES	94	ENSGT00620000087961.a.b.a.b.a.i	ENSGT00940000155209.mb.h	ENSGT00530000064743.b.e	ENSGT00940000155209.mb.g.b.a	ENSGT00940000156019.c.b.c	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000159260.h.c.a	ENSGT00990000206730	ENSGT00530000064743.b.f	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a.c.b	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455.i	ENSGT00940000158382.o.a #25	ENSGT00940000167455.j
Huchen	DUPLICATION
Huchen	MODERN SPECIES	3391														ENSHHUG00000000244	fam3c (ENSHHUG00000000251)	btg1 (ENSHHUG00000000270) #22	ENSHHUG00000000311
Huchen	MODERN SPECIES	2798																btg1 (ENSHHUG00000008465) #22	glo1 (ENSHHUG00000008480)
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	187																ENSGT00950000182952.C.h.e #22	ENSGT00940000167455.i	ENSGT00940000158382.o.a #25	ENSGT00940000158177.b #26	ENSGT00940000158968.e #27	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000164581.A.a.a.h	ENSGT01000000214676.c	ENSGT00880000138031	ENSGT00950000182976.a.a.d	ENSGT00940000155095.i.b.b.c.a.a
Salmo	ANCESTRAL SPECIES	25	ENSGT00940000161249.a.b	ENSGT00940000167336.e	ENSGT00620000087961.a.b.a.b.a.i	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.b.a.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.b.a.a	ENSGT00940000155209.mb.g.a.a	ENSGT00940000156019.c.b.d.b.b	ENSGT00990000206730.d	ENSGT00530000064743.b.f	ENSGT00530000064743.b.e.b	ENSGT00730000111591.b.d	ENSGT00940000154156.c.b.n.b	ENSGT01030000234563.a.a.c.a.d	ENSGT01030000234563.a.a.c.a.c.b	ENSGT00950000183004.a.b.a.a.x	ENSGT00950000182952.C.h.e #22	ENSGT00940000167455.i	ENSGT00940000158382.o.a.a #25	ENSGT00940000158177.b.f #26	ENSGT00940000158968.f #27	ENSGT00940000157574.w.a #28	ENSGT00640000091774.b.g	ENSGT00940000164581.A.a.a.g	ENSGT01000000214676.d	ENSGT00880000138031.s	ENSGT00950000182976.a.a.c	ENSGT00940000155095.i.b.b.c.a.b	ENSGT00940000157835.g.a	ENSGT00390000018647	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.b.a	ENSGT00940000157710.n
River trout	MODERN SPECIES	38	ENSSTUG00000027542	ENSSTUG00000027536	cacna2d1a (ENSSTUG00000024038)	hgfa (ENSSTUG00000023769)	ENSSTUG00000023744	ENSSTUG00000023732	LRRC4 (ENSSTUG00000023724)	snd1 (ENSSTUG00000020987)	ENSSTUG00000020864	si:dkey-5i3.5 (ENSSTUG00000020855)	ENSSTUG00000020842	ENSSTUG00000020824	impdh1b (ENSSTUG00000020282)	ENSSTUG00000020245	fam3c (ENSSTUG00000020216)	btg1 (ENSSTUG00000020204) #22	ENSSTUG00000020198	dcn (ENSSTUG00000020180) #25	lum (ENSSTUG00000020158) #26	kera (ENSSTUG00000020154) #27	epyc (ENSSTUG00000020139) #28	si:dkeyp-38g8.5 (ENSSTUG00000020129)	si:ch211-244b2.4 (ENSSTUG00000020114)	ENSSTUG00000020094	scyl2 (ENSSTUG00000019896)	ENSSTUG00000019868	FUT9 (ENSSTUG00000019862)	FUT9 (ENSSTUG00000019855)	FUT9 (ENSSTUG00000019845)	tcp11l2 (ENSSTUG00000019829)	ENSSTUG00000019808
Atlantic salmon	MODERN SPECIES	26	tspan11 (ENSSSAG00000004120)	sema3aa (ENSSSAG00000100291)	ENSSSAG00000086957	cacna2d1a (ENSSSAG00000092621)	hgfa (ENSSSAG00000083023)	pax4 (ENSSSAG00000043621)	ENSSSAG00000109065	snd1 (ENSSSAG00000026891)	lepb2 (ENSSSAG00000002231)	ENSSSAG00000002250	ENSSSAG00000118736	ENSSSAG00000033335	impdh1b (ENSSSAG00000034895)	ENSSSAG00000002619	ENSSSAG00000101565	btg1 (ENSSSAG00000054085) #22	ENSSSAG00000108947	ENSSSAG00000095748	dcn (ENSSSAG00000121802) #25	lum (ENSSSAG00000020269) #26	kera (ENSSSAG00000110385) #27	epyc (ENSSSAG00000054919) #28	si:dkeyp-38g8.5 (ENSSSAG00000083861)	ENSSSAG00000054938	scyl2 (ENSSSAG00000115955)	ENSSSAG00000114174	ENSSSAG00000098002	ENSSSAG00000002665	ENSSSAG00000054071	ENSSSAG00000084023	apaf1 (ENSSSAG00000044247)
Oncorhynchus	ANCESTRAL SPECIES	91	ENSGT00940000156019.c.b.c.a	ENSGT00940000165785	ENSGT00510000047270.i.a	ENSGT00940000159260.h.c.b	ENSGT00510000047270.j	ENSGT00940000159260.h.c.a.a	ENSGT00990000206730.f	ENSGT00530000064743.b.e.a	ENSGT00730000111591.b.f	ENSGT00990000205707	ENSGT00530000064743.b.f	ENSGT00730000111591.b.e	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a.c.b	ENSGT00950000183004.a.b.a.a.y.a	ENSGT00950000182952.C.h.e #22	ENSGT01030000234563.a.a.c.a.c.a	ENSGT00950000183004.a.b.a.a.y.b	ENSGT00950000182952.C.h.f #22	ENSGT00940000167455.i	ENSGT00940000158382.o.a #25	ENSGT00940000158177.b.h #26	ENSGT00940000158968.e.b #27	ENSGT00940000167455.j	ENSGT00940000158382.o.b #25	ENSGT00940000157574.u.a #28	ENSGT00640000091774.b.j	ENSGT00940000164581.A.a.a.h	ENSGT01000000214676.d	ENSGT00880000138031.r.a	ENSGT00950000182976.a.a.d
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000070133	ENSOMYG00000059451	ENSOMYG00000049526	ENSOMYG00000062922	snd1 (ENSOMYG00000035597)	ENSOMYG00000073817	ENSOMYG00000071236	ENSOMYG00000035462	ENSOMYG00000068470	ENSOMYG00000035448	ENSOMYG00000035432	ENSOMYG00000035412	impdh1b (ENSOMYG00000035078)	ENSOMYG00000020508	ENSOMYG00000035003	btg1 (ENSOMYG00000034979) #22	ENSOMYG00000062686	ENSOMYG00000047881	ENSOMYG00000072178	ENSOMYG00000034970	dcn (ENSOMYG00000034961) #25	lum (ENSOMYG00000034937) #26	kera (ENSOMYG00000034932) #27	epyc (ENSOMYG00000034911) #28	si:dkeyp-38g8.5 (ENSOMYG00000034901)	si:ch211-244b2.4 (ENSOMYG00000034884)	ENSOMYG00000077608	ENSOMYG00000034804	ENSOMYG00000034780	ENSOMYG00000034776	ENSOMYG00000034771
Salmoninae_a	ANCESTRAL SPECIES	107	ENSGT00940000155209.mb.g.a	ENSGT00940000156019.c.b.d.b.b	ENSGT00940000155209.mb.g.b.a	ENSGT00940000156019.c.b.c	ENSGT00940000165785	ENSGT00510000047270.j	ENSGT00940000159260.h.c.a	ENSGT00990000206730	ENSGT00530000064743.b.f	ENSGT00530000064743.b.e.a	ENSGT00730000111591.b	ENSGT00990000205707	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a.c.b	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h.f #22	ENSGT00940000167455.j	ENSGT00940000158382.o.b #25
Salmo	ANCESTRAL SPECIES	92	ENSGT00940000161249.b	ENSGT00940000167336.f	ENSGT00620000087961.a.b.a.b.a.j	ENSGT00940000155209.mb.g.a.b	ENSGT00940000156019.c.b.d.b.a	ENSGT00940000165785	ENSGT00940000159260.h.c.a	ENSGT00510000047270.i.a	ENSGT00940000159260.h.d	ENSGT00990000206730.c.a	ENSGT00530000064743.b.e.a	ENSGT00730000111591.b.c	ENSGT00940000154156.c.b.n.a	ENSGT01030000234563.a.a.c.a.c.a	ENSGT00950000183004.a.b.a.a.w	ENSGT00950000182952.C.h.f #22	ENSGT00940000167455.j	ENSGT00940000158382.o.b #25	ENSGT00940000158177.b.e #26	ENSGT00940000158968.e #27	ENSGT00940000157574.w.b #28	ENSGT00640000091774.b.h	ENSGT00940000164581.A.a.a.h	ENSGT01000000214676.c	ENSGT00880000138031.t	ENSGT00950000182976.a.a.d	ENSGT00940000155095.i.b.b.c.a.a	ENSGT00940000155095.i.b.b.c.b	ENSGT00940000157835.g.b	ENSGT00940000157835.h	ENSGT00940000157710.m
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000100925	ENSSSAG00000006525	cacna2d1a (ENSSSAG00000006531)	hgfa (ENSSSAG00000025368)	pax4 (ENSSSAG00000047932)	ENSSSAG00000105511	ENSSSAG00000032651	snd1 (ENSSSAG00000082155)	lepb1 (ENSSSAG00000033095)	ENSSSAG00000107514	ENSSSAG00000101057	ENSSSAG00000084661	imdh1 (ENSSSAG00000103871)	ENSSSAG00000084632	ENSSSAG00000107588	BTG1 (ENSSSAG00000115043) #22	ENSSSAG00000117866	pgs2 (ENSSSAG00000020386) #25	lum (ENSSSAG00000020979) #26	kera (ENSSSAG00000106037) #27	ENSSSAG00000115936	epyc (ENSSSAG00000020178) #28	si:dkeyp-38g8.5 (ENSSSAG00000100850)	ENSSSAG00000020083	ENSSSAG00000054949	ENSSSAG00000055007	ENSSSAG00000019477	ENSSSAG00000109817	ENSSSAG00000019400	ENSSSAG00000120410	ENSSSAG00000019094
River trout	MODERN SPECIES	34	ENSSTUG00000030864	prmt8b (ENSSTUG00000030889)	tspan11 (ENSSTUG00000030895)	sema3aa (ENSSTUG00000030948)	ENSSTUG00000032798	cacna2d1a (ENSSTUG00000033393)	ENSSTUG00000036491	hgfa (ENSSTUG00000036503)	pax4 (ENSSTUG00000036524)	snd1 (ENSSTUG00000036606)	LRRC4 (ENSSTUG00000037929)	ENSSTUG00000037939	IMPDH1 (ENSSTUG00000037947)	ENSSTUG00000037967	fam3c (ENSSTUG00000038086)	btg1 (ENSSTUG00000038102) #22	ENSSTUG00000038107	ENSSTUG00000038113	dcn (ENSSTUG00000038117) #25	lum (ENSSTUG00000038135) #26	kera (ENSSTUG00000038142) #27	epyc (ENSSTUG00000038152) #28	si:dkeyp-38g8.5 (ENSSTUG00000038179)	si:ch211-244b2.4 (ENSSTUG00000038185)	si:ch211-244b2.3 (ENSSTUG00000038205)	scyl2 (ENSSTUG00000038285)	ENSSTUG00000038470	FUT9 (ENSSTUG00000038490)	FUT9 (ENSSTUG00000038493)	tcp11l2 (ENSSTUG00000038503)	apaf1 (ENSSTUG00000038551)
Oncorhynchus	ANCESTRAL SPECIES	91	ENSGT00940000159260.h.c.b	ENSGT00510000047270.j	ENSGT00940000159260.h.c.a.a	ENSGT00990000206730.f	ENSGT00530000064743.b.e.a	ENSGT00730000111591.b.f	ENSGT00990000205707	ENSGT00530000064743.b.f	ENSGT00730000111591.b.e	ENSGT00940000154156.c.b	ENSGT01030000234563.a.a.c.a.c.b	ENSGT00950000183004.a.b.a.a.y.a	ENSGT00950000182952.C.h.e #22	ENSGT01030000234563.a.a.c.a.c.a	ENSGT00950000183004.a.b.a.a.y.b	ENSGT00950000182952.C.h.f #22	ENSGT00940000167455.i	ENSGT00940000158382.o.a #25	ENSGT00940000158177.b.h #26	ENSGT00940000158968.e.b #27	ENSGT00940000167455.j	ENSGT00940000158382.o.b #25	ENSGT00940000157574.u.a #28	ENSGT00640000091774.b.j	ENSGT00940000164581.A.a.a.h	ENSGT01000000214676.d	ENSGT00880000138031.r.a	ENSGT00950000182976.a.a.d	ENSGT00940000155095.i.b.b.c.a.a
Oncorhynchus_a	DUPLICATION
Oncorhynchus_a	ANCESTRAL SPECIES	198																ENSGT00950000182952.C.h.f.a #22	ENSGT00940000167455.j	ENSGT00940000158382.o.b #25	ENSGT00940000158177.b.g.b #26	ENSGT00940000158968.e.b #27	ENSGT00940000157574.u.a #28	ENSGT00640000091774.b.j	ENSGT00940000164581.A.a.a.h	ENSGT01000000214676.d	ENSGT00880000138031.r.a	ENSGT00950000182976.a.a.d	ENSGT00940000155095.i.b.b.c.a.a
Coho salmon	MODERN SPECIES	10				ENSOKIG00005050988	ENSOKIG00005005851	snd1 (ENSOKIG00005005921)	LRRC4 (ENSOKIG00005006529)	ENSOKIG00005006547	ENSOKIG00005006555	ENSOKIG00005006567	ENSOKIG00005006612	ENSOKIG00005006879	ENSOKIG00005006891	fam3c (ENSOKIG00005006911)	ENSOKIG00005006943	btg1 (ENSOKIG00005006949) #22	ENSOKIG00005006958	ENSOKIG00005006965	dcn (ENSOKIG00005006972) #25	ENSOKIG00005006986	lum (ENSOKIG00005006995) #26	kera (ENSOKIG00005007007) #27	epyc (ENSOKIG00005007016) #28	si:dkeyp-38g8.5 (ENSOKIG00005007040)	si:ch211-244b2.4 (ENSOKIG00005007055)	ENSOKIG00005007068	scyl2 (ENSOKIG00005007097)	ENSOKIG00005007178	FUT9 (ENSOKIG00005007194)	TCP11L2 (ENSOKIG00005007199)	ENSOKIG00005007206
Chinook salmon	MODERN SPECIES	2978												ENSOTSG00005046126	oprk1 (ENSOTSG00005046127)	atp6v1h (ENSOTSG00005046130)	ENSOTSG00005046131	btg1 (ENSOTSG00005046132) #22
Oncorhynchus_a	ANCESTRAL SPECIES	459														ENSGT01030000234563.a.a.c.a.c.a	ENSGT00950000183004.a.b.a.a.y.b	ENSGT00950000182952.C.h.f.b #22
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	57					ENSOTSG00005024862	ENSOTSG00005024863	si:dkey-5i3.5 (ENSOTSG00005024865)	fam3c (ENSOTSG00005024866)	impdh1b (ENSOTSG00005024879)	ENSOTSG00005027020	ENSOTSG00005027021	impdh1b (ENSOTSG00005027023)	ENSOTSG00005027024	ENSOTSG00005027025	fam3c (ENSOTSG00005027026)	btg1 (ENSOTSG00005027027) #22	ENSOTSG00005027028	STXBP3 (ENSOTSG00005027030)	gpsm2l (ENSOTSG00005027060)	MCOLN3 (ENSOTSG00005027154)	DNAI3 (ENSOTSG00005027171)	SYDE2 (ENSOTSG00005027207)	zgc:65873 (ENSOTSG00005027209)	DDAH1 (ENSOTSG00005027211)	ENSOTSG00005027213	ccn1 (ENSOTSG00005027214)	ZNHIT6 (ENSOTSG00005027216)	ENSOTSG00005027218	ENSOTSG00005027222	CLCA1 (ENSOTSG00005027227)	lurap1 (ENSOTSG00005027468)
Chinook salmon	MODERN SPECIES	2924												ENSOTSG00005026823	impdh1b (ENSOTSG00005026822)	ENSOTSG00005026821	fam3c (ENSOTSG00005026820)	btg1 (ENSOTSG00005026819) #22	STXBP3 (ENSOTSG00005026808)	ENSOTSG00005026792	MCOLN3 (ENSOTSG00005026755)	DNAI3 (ENSOTSG00005026747)	SYDE2 (ENSOTSG00005026742)	zgc:65873 (ENSOTSG00005026737)	DDAH1 (ENSOTSG00005026734)	ENSOTSG00005026733	ccn1 (ENSOTSG00005026732)	ZNHIT6 (ENSOTSG00005026731)	ENSOTSG00005030989	ENSOTSG00005030984	CLCA1 (ENSOTSG00005030540)	lurap1 (ENSOTSG00005030536)	TTC22 (ENSOTSG00005030256)
Coho salmon	MODERN SPECIES	29	ENSOKIG00005025931	ENSOKIG00005028950	cacna2d1a (ENSOKIG00005029137)	ENSOKIG00005032822	ENSOKIG00005032834	hgfa (ENSOKIG00005032853)	pax4 (ENSOKIG00005033046)	snd1 (ENSOKIG00005033151)	LRRC4 (ENSOKIG00005035146)	ENSOKIG00005035157	ENSOKIG00005035184	ENSOKIG00005035208	impdh1b (ENSOKIG00005035400)	ENSOKIG00005037584	ENSOKIG00005037620	btg1 (ENSOKIG00005037694) #22	ENSOKIG00005037721	ENSOKIG00005037736	dcn (ENSOKIG00005037745) #25	lum (ENSOKIG00005037761) #26	kera (ENSOKIG00005037781) #27	epyc (ENSOKIG00005037790) #28	si:dkeyp-38g8.5 (ENSOKIG00005037807)	ENSOKIG00005037833	SCYL2 (ENSOKIG00005037889)	ENSOKIG00005038053	FUT9 (ENSOKIG00005038095)	tcp11l2 (ENSOKIG00005038105)	ENSOKIG00005038162	apaf1 (ENSOKIG00005038271)	ENSOKIG00005039129
Rainbow trout	MODERN SPECIES	13	cacna2d1a (ENSOMYG00000073753)	ENSOMYG00000020150	ENSOMYG00000063040	hgfa (ENSOMYG00000050980)	pax4 (ENSOMYG00000020172)	snd1 (ENSOMYG00000020231)	ENSOMYG00000020485	ENSOMYG00000020702	ENSOMYG00000020694	ENSOMYG00000020681	ENSOMYG00000075808	ENSOMYG00000020540	ENSOMYG00000020669	ENSOMYG00000075921	ENSOMYG00000054903	btg1 (ENSOMYG00000020493) #22	ENSOMYG00000020799	dcn (ENSOMYG00000020811) #25	lum (ENSOMYG00000020839) #26	kera (ENSOMYG00000020847) #27	epyc (ENSOMYG00000020857) #28	si:dkeyp-38g8.5 (ENSOMYG00000020868)	ENSOMYG00000020878	ENSOMYG00000020885	ENSOMYG00000020932	fut9 (ENSOMYG00000021009)	ENSOMYG00000021015	ENSOMYG00000005587	apaf1 (ENSOMYG00000006669)	ENSOMYG00000007187	ENSOMYG00000074038
Northern pike	MODERN SPECIES	22	tspan11 (ENSELUG00000001783)	sema3aa (ENSELUG00000001784)	ENSELUG00000001786	cacna2d1a (ENSELUG00000001792)	hgfa (ENSELUG00000001794)	pax4 (ENSELUG00000001797)	snd1 (ENSELUG00000001805)	LRRC4 (ENSELUG00000032942)	ENSELUG00000001808	ENSELUG00000029671	si:dkey-5i3.5 (ENSELUG00000001809)	ENSELUG00000001810	impdh1b (ENSELUG00000001819)	ENSELUG00000001825	fam3c (ENSELUG00000001830)	btg1 (ENSELUG00000032189) #22	ENSELUG00000000049	dcn (ENSELUG00000001835) #25	lum (ENSELUG00000001843) #26	kera (ENSELUG00000001846) #27	epyc (ENSELUG00000001849) #28	si:dkeyp-38g8.5 (ENSELUG00000029910)	si:ch211-244b2.4 (ENSELUG00000001852)	si:ch211-244b2.3 (ENSELUG00000001856)	scyl2 (ENSELUG00000001857)	ENSELUG00000001860	tcp11l2 (ENSELUG00000001862)	ENSELUG00000001863	apaf1 (ENSELUG00000001867)	anks1b (ENSELUG00000001877)	uhrf1bp1l (ENSELUG00000001881)
Otomorpha	ANCESTRAL SPECIES	72	ENSGT00940000157638	ENSGT00950000182835.d.b	ENSGT00790000123099	ENSGT00390000000121	ENSGT01010000222336.b.a.b.a	ENSGT00940000156003.l.b	ENSGT01070000253775.a.d.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00510000047522	ENSGT00950000183004.a.b.b	ENSGT00640000091774.a.c	ENSGT00940000154527.a.a.b.b	ENSGT00940000174622	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068
Otophysi	ANCESTRAL SPECIES	187												ENSGT00940000158677	ENSGT00940000153678.a.a	ENSGT00390000006485.c.sc	ENSGT00940000153438.b	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000154527.a.a.b.a	ENSGT00510000047602	ENSGT00390000016313.a.a	ENSGT00940000160568	ENSGT00990000205397	ENSGT00940000162238.a.b	ENSGT00980000199766	ENSGT00940000155126.t
Characiphysae	ANCESTRAL SPECIES	63	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b	ENSGT00390000008702	ENSGT00390000014557	ENSGT00940000156608	ENSGT00940000155441	ENSGT00940000155210.a.b #16	ENSGT00940000158677	ENSGT00940000153678.a.a	ENSGT00390000006485.c.sc	ENSGT00940000153438.b	ENSGT00950000182952.C.h #22	ENSGT00390000005378	ENSGT00950000182999.b.a.a	ENSGT00940000160124	ENSGT00940000156000	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000156246.c.b	ENSGT00940000164630	ENSGT01050000244882.b.d	ENSGT00940000157710
Characiphysae_b	ANCESTRAL SPECIES	31	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b	ENSGT00390000008702	ENSGT00390000014557	ENSGT00940000156608	ENSGT00940000155441	ENSGT00940000155210.a.b #16	ENSGT00940000158677	ENSGT00940000153678.a.a	ENSGT00390000006485.c.sc	ENSGT00940000153438.b	ENSGT00950000182952.C.h #22	ENSGT00390000005378	ENSGT00950000182999.b.a.a	ENSGT00940000160124	ENSGT00940000156000	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000156246.c.b	ENSGT00940000164630	ENSGT01050000244882.b.d	ENSGT00940000157710
Characoidei	ANCESTRAL SPECIES	80	ENSGT00940000158917	ENSGT00940000155486	ENSGT00950000183205.b.a.b.a.b	ENSGT00390000016138	ENSGT00940000159389	ENSGT00390000018003.b	ENSGT00390000008702	ENSGT00390000014557	ENSGT00940000156608	ENSGT00940000155441	ENSGT00940000155210.a.b #16	ENSGT00940000158677	ENSGT00940000153678.a.a	ENSGT00390000006485.c.sc	ENSGT00940000153438.b	ENSGT00950000182952.C.h #22	ENSGT00390000005378	ENSGT00950000182999.b.a.a	ENSGT00940000160124	ENSGT00940000156000	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000156246.c.b	ENSGT00940000157710	ENSGT00940000154572	ENSGT00600000084428.b
Red-bellied piranha	MODERN SPECIES	272						fgfr1op2 (ENSPNAG00000017156)	TM7SF3 (ENSPNAG00000017172)	med21 (ENSPNAG00000017182)	pmpcb (ENSPNAG00000017229)	dnajc2 (ENSPNAG00000017305)	nudt4b (ENSPNAG00000017347) #16	pkp2 (ENSPNAG00000017362)	dennd5b (ENSPNAG00000017640)	sinhcaf (ENSPNAG00000017661)	caprin2 (ENSPNAG00000017781)	btg1 (ENSPNAG00000004956) #22	itfg2 (ENSPNAG00000017847)	nrip2 (ENSPNAG00000017860)	klhl42 (ENSPNAG00000017881)	cwf19l1 (ENSPNAG00000017936)	washc3 (ENSPNAG00000017945)	dram1 (ENSPNAG00000017955)	gnptab (ENSPNAG00000018089)	chpt1 (ENSPNAG00000018121)	mybpc1 (ENSPNAG00000018204)	ENSPNAG00000018216	spic (ENSPNAG00000018232)	dnajb9b (ENSPNAG00000018247)	apaf1 (ENSPNAG00000018274)	anks1b (ENSPNAG00000018412)	uhrf1bp1l (ENSPNAG00000018473)
Mexicana tetra	MODERN SPECIES	22	ENSAMXG00000043926	ENSAMXG00000039591	waslb (ENSAMXG00000041475)	gpr37b (ENSAMXG00000003640)	gas2l3 (ENSAMXG00000030075)	fgfr1op2 (ENSAMXG00000039243)	TM7SF3 (ENSAMXG00000042075)	med21 (ENSAMXG00000037449)	pmpcb (ENSAMXG00000007214)	dnajc2 (ENSAMXG00000007216)	nudt4b (ENSAMXG00000040513) #16	pkp2 (ENSAMXG00000007234)	dennd5b (ENSAMXG00000007247)	sinhcaf (ENSAMXG00000041503)	caprin2 (ENSAMXG00000007266)	btg1 (ENSAMXG00000042550) #22	itfg2 (ENSAMXG00000042592)	nrip2 (ENSAMXG00000035836)	klhl42 (ENSAMXG00000040776)	cwf19l1 (ENSAMXG00000007302)	washc3 (ENSAMXG00000007318)	dram1 (ENSAMXG00000031247)	gnptab (ENSAMXG00000007331)	chpt1 (ENSAMXG00000030966)	mybpc1 (ENSAMXG00000037531)	spic (ENSAMXG00000015800)	ENSAMXG00000033995	dnajb9b (ENSAMXG00000041402)	apaf1 (ENSAMXG00000015838)	ENSAMXG00000036523	anks1b (ENSAMXG00000015871)
Electric eel	MODERN SPECIES	610														sinhcaf (ENSEEEG00000018541)	ENSEEEG00000018539	btg1 (ENSEEEG00000018537) #22	ENSEEEG00000018534	itfg2 (ENSEEEG00000018530)	nrip2 (ENSEEEG00000018529)	klhl42 (ENSEEEG00000018526)	cwf19l1 (ENSEEEG00000018510)	washc3 (ENSEEEG00000018505)	dram1 (ENSEEEG00000018502)	gnptab (ENSEEEG00000018468)	chpt1 (ENSEEEG00000018395)	mybpc1 (ENSEEEG00000017760)	ENSEEEG00000017735	spic (ENSEEEG00000017733)	dnajb9b (ENSEEEG00000017729)	ENSEEEG00000017731	avpr2l (ENSEEEG00000017728)
Channel catfish	MODERN SPECIES	5	slc38a4 (ENSIPUG00000015906)	slc38a2 (ENSIPUG00000015924)	scaf11 (ENSIPUG00000015943)	ARID2 (ENSIPUG00000015959)	GAS2L3 (ENSIPUG00000016008)	fgfr1op2 (ENSIPUG00000016036)	tm7sf3 (ENSIPUG00000016064)	med21 (ENSIPUG00000016119)	pmpcb (ENSIPUG00000016136)	dnajc2 (ENSIPUG00000016177)	nudt4b (ENSIPUG00000016210) #16	pkp2 (ENSIPUG00000016227)	dennd5b (ENSIPUG00000016271)	FAM60A (ENSIPUG00000016490)	caprin2 (ENSIPUG00000016517)	btg1 (ENSIPUG00000016587) #22	ENSIPUG00000016632	cat (ENSIPUG00000016679)	itfg2 (ENSIPUG00000016788)	nrip2 (ENSIPUG00000016853)	klhl42 (ENSIPUG00000016864)	cwf19l1 (ENSIPUG00000016884)	washc3 (ENSIPUG00000016914)	dram1 (ENSIPUG00000016933)	gnptab (ENSIPUG00000016963)	chpt1 (ENSIPUG00000017031)	mybpc1 (ENSIPUG00000017099)	ENSIPUG00000017572	SPIC (ENSIPUG00000017583)	dnajb9b (ENSIPUG00000017594)	apaf1 (ENSIPUG00000017605)
Cyprinoidei	ANCESTRAL SPECIES	28	ENSGT00950000182939.b.a.b	ENSGT00940000155197	ENSGT00940000154098.a.f	ENSGT00390000008708.h.b	ENSGT00940000153525.j	ENSGT00540000073481	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00390000014507.a.b	ENSGT00550000076278.a	ENSGT00940000157835	ENSGT00940000158677	ENSGT00940000153678.a.a	ENSGT00390000006485.c.sc	ENSGT00940000153438.b	ENSGT00950000182952.C.h #22	ENSGT00940000167455	ENSGT00940000158382 #25	ENSGT00940000158177.b #26	ENSGT00940000158968 #27	ENSGT01100000264068	ENSGT00940000157574 #28	ENSGT00640000091774.b	ENSGT00940000154527.a.a.b.a	ENSGT00510000047602	ENSGT00390000016313.a.a	ENSGT00940000160568	ENSGT01030000234814	ENSGT00940000153769.E	ENSGT00940000157992	ENSGT00390000001439
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	2	ENSGT00950000182939.b.a.b.d	ENSGT00940000155197.d	ENSGT00940000154098.a.f.b	ENSGT00390000008708.h.b.a	ENSGT00940000153525.j.b	ENSGT00540000073481.a	ENSGT00390000018612.a.b.b	ENSGT00390000012501.b	ENSGT00390000014507.a.b.c	ENSGT00550000076278.a.a	ENSGT00940000157835.e	ENSGT00940000158677.d	ENSGT00940000153678.a.a.a	ENSGT00390000006485.c.sc.a	ENSGT00940000153438.b.n	ENSGT00950000182952.C.h.g #22	ENSGT00940000167455.a	ENSGT00940000158382.j #25	ENSGT00940000158177.b.a #26	ENSGT00940000158968.c #27	ENSGT00940000157574.e.b #28	ENSGT00640000091774.b.a	ENSGT00940000154527.a.a.b.a.o	ENSGT00510000047602.f	ENSGT00390000016313.a.a.h	ENSGT00940000160568.d	ENSGT01030000234814	ENSGT00940000153769.E	ENSGT00940000162238.a.b	ENSGT00940000157992	ENSGT00390000001439.gb
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	33	ETNK1 (ENSCARG00000019146)	strap (ENSCARG00000019165)	tmpoa (ENSCARG00000019200)	slc25a3a (ENSCARG00000019229)	ldhba (ENSCARG00000019270)	kiss2 (ENSCARG00000019297)	gys2 (ENSCARG00000019354)	spx (ENSCARG00000020580)	golt1ba (ENSCARG00000020599)	ENSCARG00000020645	tcp11l2 (ENSCARG00000020652)	pkp2 (ENSCARG00000020688)	dennd5b (ENSCARG00000020810)	sinhcaf (ENSCARG00000022971)	caprin2 (ENSCARG00000022986)	btg1 (ENSCARG00000023016) #22	ENSCARG00000023022	ENSCARG00000023024	dcn (ENSCARG00000023030) #25	lum (ENSCARG00000023044) #26	kera (ENSCARG00000023053) #27	epyc (ENSCARG00000023081) #28	si:dkeyp-38g8.5 (ENSCARG00000018661)	atp2b1a (ENSCARG00000018737) #31	mest (ENSCARG00000019503)	copg2 (ENSCARG00000019913)	ucn3l (ENSCARG00000019970)	ENSCARG00000019971	ENSCARG00000019979	LRGUK (ENSCARG00000020002)	exoc4 (ENSCARG00000020015)
Goldfish	MODERN SPECIES	33	ENSCARG00000008135	42sp43 (ENSCARG00000008094)	ENSCARG00000008085	STAC2 (ENSCARG00000008073)	cratb (ENSCARG00000007303)	ppt2b (ENSCARG00000007203)	ENSCARG00000007183	ENSCARG00000007153	ENSCARG00000007097	tnnt2c (ENSCARG00000007090)	si:dkey-222f8.3 (ENSCARG00000007062)	braf (ENSCARG00000004724)	mrps33 (ENSCARG00000004571)	sinhcaf (ENSCARG00000004531)	caprin2 (ENSCARG00000004506)	btg1 (ENSCARG00000004492) #22	ENSCARG00000004485	dcn (ENSCARG00000004461) #25	lum (ENSCARG00000004448) #26	kera (ENSCARG00000004434) #27	ENSCARG00000004421	epyc (ENSCARG00000004404) #28	si:dkeyp-38g8.5 (ENSCARG00000004388)	atp2b1a (ENSCARG00000002553) #31	mest (ENSCARG00000002255)	copg2 (ENSCARG00000002139)	ucn3l (ENSCARG00000002113)	si:dkey-117n7.5 (ENSCARG00000002095)	ENSCARG00000002056	LRGUK (ENSCARG00000002033)	exoc4 (ENSCARG00000001692)
Cyprininae_a	ANCESTRAL SPECIES	272	ENSGT00940000156122.l	ENSGT00950000182939.b.a.b.d	ENSGT00940000155197.d	ENSGT00940000154098.a.f.b	ENSGT00390000008708.h.b.a	ENSGT00540000073481.a	ENSGT00390000018612.a.b.b	ENSGT00390000012501.b	ENSGT00390000014507.a.b.c	ENSGT00550000076278.a.b	ENSGT00940000157835.e	ENSGT00940000158677.d	ENSGT00940000153678.a.a.a	ENSGT00390000006485.c.sc.a	ENSGT00940000153438.b.n	ENSGT00950000182952.C.h.g #22	ENSGT00940000167455.a	ENSGT00940000158382.j #25	ENSGT00940000158177.b.a #26	ENSGT00940000158968.c #27	ENSGT00940000157574.e.b #28	ENSGT00640000091774.b.a	ENSGT00940000154527.a.a.b.a.o	ENSGT00510000047602.f	ENSGT00390000016313.a.a.h	ENSGT00940000160568.d	ENSGT00990000205397	ENSGT00940000155126.t
Common carp reference	MODERN SPECIES	8	sox5 (ENSCCRG00000051929)	ENSCCRG00000051919	strap (ENSCCRG00000041679)	tmpoa (ENSCCRG00000041684)	slc25a3a (ENSCCRG00000055713)	kiss2 (ENSCCRG00000065809)	ENSCCRG00000039329	GYS2 (ENSCCRG00000000240)	spx (ENSCCRG00000063651)	golt1ba (ENSCCRG00000000396)	stmp1 (ENSCCRG00000068377)	tcp11l2 (ENSCCRG00000000423)	pkp2 (ENSCCRG00000000819)	sinhcaf (ENSCCRG00000053436)	caprin2 (ENSCCRG00000000982)	btg1 (ENSCCRG00000000903) #22	ENSCCRG00000060143	dcn (ENSCCRG00000020097) #25	lum (ENSCCRG00000001040) #26	kera (ENSCCRG00000001017) #27	epyc (ENSCCRG00000070973) #28	si:dkeyp-38g8.5 (ENSCCRG00000001055)	ENSCCRG00000055030	mest (ENSCCRG00000010362)	copg2 (ENSCCRG00000010260)	ucn3l (ENSCCRG00000057152)	ENSCCRG00000009323	LRGUK (ENSCCRG00000040370)	exoc4 (ENSCCRG00000037577)	chchd3a (ENSCCRG00000048064)	plxna4 (ENSCCRG00000026336)
Golden-line barbel	MODERN SPECIES	1011														sinhcaf (ENSSGRG00000007530)	caprin2 (ENSSGRG00000007528)	btg1 (ENSSGRG00000007523) #22	ENSSGRG00000007522	dcn (ENSSGRG00000007521) #25	lum (ENSSGRG00000007518) #26	epyc (ENSSGRG00000007515) #28	si:dkeyp-38g8.5 (ENSSGRG00000007514)	ENSSGRG00000000673	mest (ENSSGRG00000000539)
Cyprininae	ANCESTRAL SPECIES	44	ENSGT00950000182939.b.a.b.c	ENSGT00940000155197.c	ENSGT00940000154098.a.f.a	ENSGT00390000008708.h.b.b	ENSGT00940000153525.j.a	ENSGT00540000073481.b	ENSGT00390000018612.a.b.a	ENSGT00390000012501.a	ENSGT00390000014507.a.b.d	ENSGT00550000076278.a.b	ENSGT00940000157835.f	ENSGT00940000158677.c	ENSGT00940000153678.a.a.b	ENSGT00390000006485.c.sc.b	ENSGT00940000153438.b.m	ENSGT00950000182952.C.h.h #22	ENSGT00940000167455.b	ENSGT00940000158382.i #25	ENSGT00940000158177.b.b #26	ENSGT00940000158968.d #27	ENSGT00940000157574.e.a #28	ENSGT00640000091774.b.b	ENSGT00940000154527.a.a.b.a.p	ENSGT00510000047602.e	ENSGT00390000016313.a.a.g	ENSGT00940000160568.c	ENSGT00990000205397	ENSGT00940000155126.t	ENSGT00940000173262	ENSGT00390000001439.fb	ENSGT00390000000903.a.i.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	21	ETNK1 (ENSCARG00000004230)	strap (ENSCARG00000004172)	tmpoa (ENSCARG00000004118)	slc25a3a (ENSCARG00000004095)	ldhba (ENSCARG00000050805)	kiss2 (ENSCARG00000050789)	gys2 (ENSCARG00000050460)	spx (ENSCARG00000050404)	golt1ba (ENSCARG00000050379)	stmp1 (ENSCARG00000050363)	tcp11l2 (ENSCARG00000050317)	pkp2 (ENSCARG00000050212)	dennd5b (ENSCARG00000049058)	sinhcaf (ENSCARG00000048888)	caprin2 (ENSCARG00000048732)	btg1 (ENSCARG00000048709) #22	ENSCARG00000047724	nrcama (ENSCARG00000036973)	pdzrn4 (ENSCARG00000036532)	yaf2 (ENSCARG00000036520)	pah (ENSCARG00000036518)	ascl1a (ENSCARG00000036515)	recql (ENSCARG00000035666)	itfg2 (ENSCARG00000035504)	nrip2 (ENSCARG00000035479)	cwf19l1 (ENSCARG00000035086)	washc3 (ENSCARG00000035026)	dram1 (ENSCARG00000035003)	chpt1 (ENSCARG00000034926)	gnptab (ENSCARG00000034674)	mybpc1 (ENSCARG00000030596)
Goldfish	MODERN SPECIES	21	si:ch211-244b2.4 (ENSCARG00000030476)	ENSCARG00000030509	ENSCARG00000030576	DEPDC4 (ENSCARG00000030686)	usp44 (ENSCARG00000030699)	vezt (ENSCARG00000030711)	fgd6 (ENSCARG00000030752)	nr2c1 (ENSCARG00000030979)	tmcc3 (ENSCARG00000031588) #8	zbed4 (ENSCARG00000031597)	TAFA5 (ENSCARG00000031602)	ENSCARG00000031612	ENSCARG00000031616	sinhcaf (ENSCARG00000031620)	caprin2 (ENSCARG00000031645)	btg1 (ENSCARG00000031712) #22	wnt5b (ENSCARG00000031722)	fbxl14b (ENSCARG00000031741)	ENSCARG00000031753	adipor2 (ENSCARG00000031770)	ttll12 (ENSCARG00000031820)	pnpla3 (ENSCARG00000031966)	sult4a1 (ENSCARG00000031979)	MPPED1 (ENSCARG00000032003)	scube1 (ENSCARG00000006731)	samm50l (ENSCARG00000007838)	ALDH1L2 (ENSCARG00000007907)	nopchap1 (ENSCARG00000008635)	SLC41A2 (ENSCARG00000008715)	chst11 (ENSCARG00000010200)	nfyba (ENSCARG00000010206)
Cyprininae_a	ANCESTRAL SPECIES	196	ENSGT00950000182939.b.a.b.c	ENSGT00940000155197.c	ENSGT00940000154098.a.f.a	ENSGT00390000008708.h.b.b	ENSGT00940000153525.j.a	ENSGT00540000073481.b	ENSGT00390000018612.a.b.a	ENSGT00390000012501.a	ENSGT00390000014507.a.b.d	ENSGT00550000076278.a.a	ENSGT00940000157835.f	ENSGT00940000158677.c	ENSGT00940000153678.a.a.b	ENSGT00390000006485.c.sc.b	ENSGT00940000153438.b.m	ENSGT00950000182952.C.h.h #22	ENSGT00940000167455.b	ENSGT00940000158382.i #25	ENSGT00940000158177.b.b #26	ENSGT00940000158968.d #27	ENSGT00940000157574.e.a #28	ENSGT00640000091774.b.b	ENSGT00940000154527.a.a.b.a.p	ENSGT00510000047602.e	ENSGT00390000016313.a.a.g	ENSGT00940000160568.c	ENSGT00940000153769.E	ENSGT00940000157992	ENSGT00390000001439.gb	ENSGT00390000000903.a.i.b	ENSGT01050000244850.B.bc.a
Common carp reference	MODERN SPECIES	36	sox5 (ENSCCRG00000082080)	ENSCCRG00000000459	strap (ENSCCRG00000024611)	tmpoa (ENSCCRG00000000492)	slc25a3a (ENSCCRG00000062366)	ldhba (ENSCCRG00000077140)	GYS2 (ENSCCRG00000000631)	kiss2 (ENSCCRG00000081830)	spx (ENSCCRG00000054749)	golt1ba (ENSCCRG00000070221)	tcp11l2 (ENSCCRG00000000758)	pkp2 (ENSCCRG00000000976)	dennd5b (ENSCCRG00000000850)	sinhcaf (ENSCCRG00000070179)	caprin2 (ENSCCRG00000000898)	btg1 (ENSCCRG00000060224) #22	ENSCCRG00000055811	ENSCCRG00000000890	dcn (ENSCCRG00000001010) #25	kera (ENSCCRG00000080550) #27	epyc (ENSCCRG00000001049) #28	si:dkeyp-38g8.5 (ENSCCRG00000074972)	ENSCCRG00000008659	mest (ENSCCRG00000008567)	copg2 (ENSCCRG00000001609)	ucn3l (ENSCCRG00000064391)	ENSCCRG00000040397	exoc4 (ENSCCRG00000049746)	chchd3a (ENSCCRG00000037555)	plxna4 (ENSCCRG00000081083)	ENSCCRG00000002556
Golden-line barbel	MODERN SPECIES		ETNK1 (ENSSGRG00000024131)	strap (ENSSGRG00000023756)	tmpoa (ENSSGRG00000023753)	slc25a3a (ENSSGRG00000023710)	ldhba (ENSSGRG00000023498)	kiss2 (ENSSGRG00000023489)	gys2 (ENSSGRG00000023243)	spx (ENSSGRG00000023236)	golt1ba (ENSSGRG00000023232)	stmp1 (ENSSGRG00000023231)	tcp11l2 (ENSSGRG00000023197)	pkp2 (ENSSGRG00000023193)	dennd5b (ENSSGRG00000023103)	sinhcaf (ENSSGRG00000023098)	caprin2 (ENSSGRG00000023097)	btg1 (ENSSGRG00000023096) #22	ENSSGRG00000023095	dcn (ENSSGRG00000022892) #25	lum (ENSSGRG00000022888) #26	kera (ENSSGRG00000022887) #27	epyc (ENSSGRG00000022886) #28	si:dkeyp-38g8.5 (ENSSGRG00000022885)	ENSSGRG00000015627	mest (ENSSGRG00000015298)	copg2 (ENSSGRG00000014591)	ucn3l (ENSSGRG00000014581)	si:dkey-117n7.5 (ENSSGRG00000014579)	ENSSGRG00000014568	LRGUK (ENSSGRG00000014566)	exoc4 (ENSSGRG00000014492)	chchd3a (ENSSGRG00000014487)
Zebrafish	MODERN SPECIES	19	tmpoa (ENSDARG00000007315)	slc25a3a (ENSDARG00000027424)	ldhba (ENSDARG00000019644)	kiss2 (ENSDARG00000077985)	spx (ENSDARG00000056859)	golt1ba (ENSDARG00000022795)	stmp1 (ENSDARG00000093058)	gys2 (ENSDARG00000004904)	ENSDARG00000093371	ENSDARG00000095159	tcp11l2 (ENSDARG00000027316)	pkp2 (ENSDARG00000023026)	dennd5b (ENSDARG00000003789)	sinhcaf (ENSDARG00000032653)	caprin2 (ENSDARG00000020749)	btg1 (ENSDARG00000027249) #22	ENSDARG00000088002	dcn (ENSDARG00000012066) #25	lum (ENSDARG00000045580) #26	kera (ENSDARG00000056938) #27	ENSDARG00000111690	epyc (ENSDARG00000056950) #28	si:dkeyp-38g8.5 (ENSDARG00000056954)	atp2b1a (ENSDARG00000012684) #31	mest (ENSDARG00000032319)	copg2 (ENSDARG00000034823)	ucn3l (ENSDARG00000087241)	si:dkey-117n7.5 (ENSDARG00000089640)	ENSDARG00000092064	ENSDARG00000092944	ENSDARG00000093135
Clupeiformes	ANCESTRAL SPECIES	87	ENSGT01050000244850.A.a.o.b	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b #10	ENSGT00940000154003.A #9	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720	ENSGT00990000207548	ENSGT00390000013715	ENSGT00950000183017.b.b.a.a	ENSGT01070000253775.a.d.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00510000047522	ENSGT00950000183004.a.b.b	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00950000182952.C.h #22	ENSGT00390000010053	ENSGT00390000011897	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238.a	ENSGT00390000004860	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.e.b	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	7	ENSCHAG00000001589	tmem168a (ENSCHAG00000001632)	gpr85 (ENSCHAG00000001657)	ENSCHAG00000001675	foxp2 (ENSCHAG00000001700)	mdfic (ENSCHAG00000001867)	tfec (ENSCHAG00000001890)	ttll12 (ENSCHAG00000001935)	ENSCHAG00000002119	tdrd9 (ENSCHAG00000002181)	atp23 (ENSCHAG00000004901)	lrig3 (ENSCHAG00000004994)	zgc:165507 (ENSCHAG00000005663)	ENSCHAG00000005680	ETV6 (ENSCHAG00000005684)	btg1 (ENSCHAG00000005758) #22	ENSCHAG00000005779	dcn (ENSCHAG00000005791) #25	lum (ENSCHAG00000005825) #26	kera (ENSCHAG00000005832) #27	epyc (ENSCHAG00000005838) #28	ENSCHAG00000005929	si:dkeyp-38g8.5 (ENSCHAG00000005940)	dclre1c (ENSCHAG00000005989)	hspa14 (ENSCHAG00000006082)	cdnf (ENSCHAG00000006132)	SHANK3 (ENSCHAG00000006147)	TYMP (ENSCHAG00000006199)	lsm8 (ENSCHAG00000006227)	ENSCHAG00000006352	syt10 (ENSCHAG00000006363)
Atlantic herring	MODERN SPECIES	21	HRH1 (ENSCHAG00000017743)	slc6a1b (ENSCHAG00000017782)	SLC6A11 (ENSCHAG00000018702)	atp2b2 (ENSCHAG00000019399)	iars1 (ENSCHAG00000019757)	tnnc1a (ENSCHAG00000019978)	rpl29 (ENSCHAG00000020005)	dusp7 (ENSCHAG00000020030)	POC1A (ENSCHAG00000020096)	alas1 (ENSCHAG00000020253)	POC1A (ENSCHAG00000020449)	ENSCHAG00000020545	alas1 (ENSCHAG00000020568)	ENSCHAG00000020974	atrip (ENSCHAG00000020986)	ENSCHAG00000020995 #22	ippk (ENSCHAG00000021008)	cenpp (ENSCHAG00000021024)	ENSCHAG00000021044	aspn (ENSCHAG00000021056)	ogna (ENSCHAG00000021204)	nol8 (ENSCHAG00000021212)	ENSCHAG00000021222	NISCH (ENSCHAG00000021242)	stab1 (ENSCHAG00000021441)	ccdc71 (ENSCHAG00000021581)	pdhb (ENSCHAG00000021595)	pxk (ENSCHAG00000021859)	HTD2 (ENSCHAG00000021936)	rpp14 (ENSCHAG00000021950)	ABHD6 (ENSCHAG00000021962)
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	6	scyl2 (ENSDCDG00000030867)	ENSDCDG00000030860	si:ch211-244b2.4 (ENSDCDG00000030854)	st8sia1 (ENSDCDG00000030847)	tnni1d (ENSDCDG00000030845)	ENSDCDG00000030840	nr2c1 (ENSDCDG00000030829)	ndufa12 (ENSDCDG00000030824) #7	tmcc3 (ENSDCDG00000030821) #8	ENSDCDG00000030480	slc26a4 (ENSDCDG00000030416)	slc26a3.1 (ENSDCDG00000030168)	cbll1 (ENSDCDG00000030160)	ENSDCDG00000030158	fam3c (ENSDCDG00000030157)	btg1 (ENSDCDG00000030156) #22	ENSDCDG00000030155	dcn (ENSDCDG00000030138) #25	lum (ENSDCDG00000030135) #26	kera (ENSDCDG00000030133) #27	ENSDCDG00000030123	epyc (ENSDCDG00000030120) #28	si:dkeyp-38g8.5 (ENSDCDG00000030115)	dclre1c (ENSDCDG00000028734)	hspa14 (ENSDCDG00000028503)	cdnf (ENSDCDG00000028492)	SHANK3 (ENSDCDG00000028485)	TYMP (ENSDCDG00000028454)	lsm8 (ENSDCDG00000028445)	ENSDCDG00000028442	kitlgb (ENSDCDG00000028439) #35
Denticle herring	MODERN SPECIES	3	tamm41 (ENSDCDG00000035411)	vgll4b (ENSDCDG00000035408)	ATG7 (ENSDCDG00000035327)	HRH1 (ENSDCDG00000035297)	slc6a1b (ENSDCDG00000035164)	SLC6A11 (ENSDCDG00000035032)	atp2b2 (ENSDCDG00000034974)	iars1 (ENSDCDG00000034943)	ENSDCDG00000034913	rpl29 (ENSDCDG00000034906)	dusp7 (ENSDCDG00000034902)	ENSDCDG00000034901	ALAS1 (ENSDCDG00000034894)	shisa10.1 (ENSDCDG00000034893)	atrip (ENSDCDG00000034891)	si:dkey-42i9.4 (ENSDCDG00000034890) #22	ippk (ENSDCDG00000034886)	ECM2 (ENSDCDG00000034882)	aspn (ENSDCDG00000034880)	OMD (ENSDCDG00000034879)	ogna (ENSDCDG00000034876)	cenpp (ENSDCDG00000034872)	nol8 (ENSDCDG00000034869)	ENSDCDG00000034866	NISCH (ENSDCDG00000034838)	ENSDCDG00000034827	ENSDCDG00000034823	ENSDCDG00000034817	ENSDCDG00000034815	ENSDCDG00000034813	ENSDCDG00000034811
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1524	RASSF3 (ENSCMIG00000008878)	SLC41A2 (ENSCMIG00000008933)	chst11 (ENSCMIG00000009140)	ENSCMIG00000009219	ENSCMIG00000009423	nfyba (ENSCMIG00000009441)	ENSCMIG00000009447	glt8d2 (ENSCMIG00000009448)	tdg.1 (ENSCMIG00000009450)	ENSCMIG00000009451	uqcc6 (ENSCMIG00000009452)	hsp90b1 (ENSCMIG00000009493)	NT5DC3 (ENSCMIG00000009656)	stab2 (ENSCMIG00000009727)	ENSCMIG00000009750	btg1 (ENSCMIG00000009754) #22	ENSCMIG00000009758	dcn (ENSCMIG00000009772) #25	lum (ENSCMIG00000009787) #26	kera (ENSCMIG00000009789) #27	EPYC (ENSCMIG00000009795) #28	ENSCMIG00000009800	ENSCMIG00000009869	poc1b (ENSCMIG00000010063)	dusp6 (ENSCMIG00000010105) #33	ENSCMIG00000010109 #35	TMTC3 (ENSCMIG00000010121) #36	cep290 (ENSCMIG00000010186) #37	zgc:103499 (ENSCMIG00000010288)	CAPS2 (ENSCMIG00000010295)	ENSCMIG00000010308
Elephant shark	MODERN SPECIES	1716	ENSCMIG00000008635	PBRM1 (ENSCMIG00000008643)	NT5DC2 (ENSCMIG00000008673)	ENSCMIG00000008791	ENSCMIG00000008797	ENSCMIG00000008803	ENSCMIG00000008807	ENSCMIG00000008813	ENSCMIG00000008815	ENSCMIG00000008818	ENSCMIG00000008821	ENSCMIG00000008826	ENSCMIG00000008839	ENSCMIG00000008852	ENSCMIG00000008854	ENSCMIG00000008855 #22	ippk (ENSCMIG00000008856)	ENSCMIG00000008859	ECM2 (ENSCMIG00000008862)	aspn (ENSCMIG00000008870)	omd (ENSCMIG00000008877)	ogna (ENSCMIG00000008879)	ENSCMIG00000008883	iars1 (ENSCMIG00000008900)	ENSCMIG00000009045	POC1A (ENSCMIG00000009472)	ENSCMIG00000009474 ##33	rpl29 (ENSCMIG00000009477)	ENSCMIG00000009482