Theria	ANCESTRAL SPECIES	2	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00540000073882	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00540000073882	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Primates	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000167249	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00430000033088 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.eb.a.b #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b.s #14	ENSGT00390000003156.a.b.k.a.b #15	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00430000033088 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00390000001332.k.b #33	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Mas night monkey	MODERN SPECIES	844	CEP83 (ENSANAG00000037925) #7	PLXNC1 (ENSANAG00000037102) #8	ENSANAG00000036838 #9	CRADD (ENSANAG00000036187) #10	SOCS2 (ENSANAG00000035479) #11	ENSANAG00000036935 #12	ENSANAG00000036950 #13	ENSANAG00000036120 #14	ENSANAG00000020476 #15	EEA1 (ENSANAG00000006674) #16	ENSANAG00000036596 #17	PLEKHG7 (ENSANAG00000037547) #18	ENSANAG00000036770 #19	ENSANAG00000020232 #20	ENSANAG00000036734 #21	BTG1 (ENSANAG00000037621) #22	ENSANAG00000037565 #23	DCN (ENSANAG00000022968) #24	LUM (ENSANAG00000020478) #25	KERA (ENSANAG00000037464) #26	EPYC (ENSANAG00000037744) #27	ENSANAG00000018323 #28	ATP2B1 (ENSANAG00000027760) #29	POC1B (ENSANAG00000023816) #30	DUSP6 (ENSANAG00000037906) #31	KITLG (ENSANAG00000001756) #32	ENSANAG00000022268 #33	TMTC3 (ENSANAG00000021779) #34	CEP290 (ENSANAG00000021204) #35	C12orf29 (ENSANAG00000023232) #36
Cebidae	ANCESTRAL SPECIES	2	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.eb.a.b #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b.s #14	ENSGT00390000003156.a.b.k.a.b #15	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000033088 #21	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00390000001332.k.b #33	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	21	METTL25 (ENSCJAG00000019400)	TMTC2 (ENSCJAG00000019420)	ENSCJAG00000073753	ENSCJAG00000081141	ENSCJAG00000086215	SLC6A15 (ENSCJAG00000019425)	TSPAN19 (ENSCJAG00000039345)	LRRIQ1 (ENSCJAG00000019445)	ALX1 (ENSCJAG00000080722)	ENSCJAG00000085601	EEA1 (ENSCJAG00000019460) #16	PLEKHG7 (ENSCJAG00000019495) #18	ENSCJAG00000019504 #20	ENSCJAG00000072042	ENSCJAG00000047057	ENSCJAG00000040127 #22	DCN (ENSCJAG00000019513) #24	LUM (ENSCJAG00000039709) #25	KERA (ENSCJAG00000019551) #26	ENSCJAG00000066164	EPYC (ENSCJAG00000019555) #27	ENSCJAG00000060300	ENSCJAG00000084144	ENSCJAG00000087071	ENSCJAG00000059999	ENSCJAG00000055513	ATP2B1 (ENSCJAG00000019568) #29	POC1B (ENSCJAG00000019637) #30	DUSP6 (ENSCJAG00000083917) #31	ENSCJAG00000019658	ENSCJAG00000019661 #32
Marmoset	MODERN SPECIES		DIAPH3 (ENSCJAG00000003729)	ENSCJAG00000056633	ENSCJAG00000073048	ENSCJAG00000071873	ENSCJAG00000085937	ENSCJAG00000071744	PCDH17 (ENSCJAG00000003715)	ENSCJAG00000083356	ENSCJAG00000080780	ENSCJAG00000003713	OLFM4 (ENSCJAG00000003690)	PCDH8 (ENSCJAG00000045669)	CNMD (ENSCJAG00000003648)	ENSCJAG00000003604	ENSCJAG00000083123	ENSCJAG00000047301 #22	ENSCJAG00000071385	NEK3 (ENSCJAG00000073411)	ENSCJAG00000055329	ENSCJAG00000078533	ALG11 (ENSCJAG00000036951)	ENSCJAG00000008414	ENSCJAG00000080418	ENSCJAG00000081654	ENSCJAG00000084063	ENSCJAG00000072532	ENSCJAG00000043055	ATP7B (ENSCJAG00000008347)	ENSCJAG00000084286	ENSCJAG00000077025	TMEM272 (ENSCJAG00000054074)
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.eb.a.b #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b.s #14	ENSGT00390000003156.a.b.k.a.b #15	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000033088 #21	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00390000001332.k.b #33	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Bolivian squirrel monkey	MODERN SPECIES	67									UBE2N (ENSSBOG00000031145) ##13	ENSSBOG00000024188 #14	ENSSBOG00000035018 #15	EEA1 (ENSSBOG00000030840) #16	PLEKHG7 (ENSSBOG00000035263) #18	ENSSBOG00000027119 #21	ENSSBOG00000029330 #20	BTG1 (ENSSBOG00000031360) #22	DCN (ENSSBOG00000032365) #24	LUM (ENSSBOG00000030254) #25	KERA (ENSSBOG00000020371) #26	EPYC (ENSSBOG00000026508) #27	CCER1 (ENSSBOG00000001585)	ENSSBOG00000030149	ATP2B1 (ENSSBOG00000022877) #29	POC1B (ENSSBOG00000023395) #30	DUSP6 (ENSSBOG00000022133) #31	ENSSBOG00000021475	KITLG (ENSSBOG00000026788) #32	ENSSBOG00000025089 #33	TMTC3 (ENSSBOG00000027049) #34	CEP290 (ENSSBOG00000024214) #35	C12orf29 (ENSSBOG00000033321) #36
Capuchin	MODERN SPECIES	212					PLXNC1 (ENSCCAG00000022143) #8	ENSCCAG00000033026 #9	CRADD (ENSCCAG00000022667) #10	SOCS2 (ENSCCAG00000026349) #11	ENSCCAG00000031179 #12	UBE2N (ENSCCAG00000033947) ##13	ENSCCAG00000011514 #14	EEA1 (ENSCCAG00000024149) #16	PLEKHG7 (ENSCCAG00000022793) #18	ENSCCAG00000028983 #21	ENSCCAG00000036807 #20	BTG1 (ENSCCAG00000022844) #22	ENSCCAG00000016024	DCN (ENSCCAG00000029089) #24	LUM (ENSCCAG00000035308) #25	KERA (ENSCCAG00000021792) #26	EPYC (ENSCCAG00000035448) #27
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00430000033088 #21	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.d ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00430000033088 #21	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Hominidae	ANCESTRAL SPECIES	4	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.d ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00430000033088 #21	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.d ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00430000033088 #21	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Pan	ANCESTRAL SPECIES	4	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.d ##13	ENSGT00940000155210.a.b #14	ENSGT00440000033468.d	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00390000016737.b	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Chimpanzee	MODERN SPECIES	3	TMCC3 (ENSPTRG00000005304)	ENSPTRG00000049511	CEP83 (ENSPTRG00000005302) #7	PLXNC1 (ENSPTRG00000005301) #8	ENSPTRG00000047060 #9	CRADD (ENSPTRG00000005300) #10	SOCS2 (ENSPTRG00000005299) #11	MRPL42 (ENSPTRG00000022791) #12	UBE2N (ENSPTRG00000005297) ##13	NUDT4 (ENSPTRG00000005296) #14	ENSPTRG00000048686	EEA1 (ENSPTRG00000005295) #16	PLEKHG7 (ENSPTRG00000005292) #18	C12H12orf74 (ENSPTRG00000033711) #19	ENSPTRG00000029605 #20	BTG1 (ENSPTRG00000050131) #22	DCN (ENSPTRG00000005290) #24	LUM (ENSPTRG00000005289) #25	KERA (ENSPTRG00000005288) #26	EPYC (ENSPTRG00000005287) #27	CCER1 (ENSPTRG00000023775)	ENSPTRG00000046703	ATP2B1 (ENSPTRG00000005286) #29	ENSPTRG00000046518	POC1B (ENSPTRG00000005284) #30	DUSP6 (ENSPTRG00000005282) #31	KITLG (ENSPTRG00000005281) #32	TMTC3 (ENSPTRG00000005280) #34	CEP290 (ENSPTRG00000005278) #35	C12H12orf29 (ENSPTRG00000005277) #36	C12H12orf50 (ENSPTRG00000005276)
Bonobo	MODERN SPECIES	3	ENSPPAG00000028908	ENSPPAG00000033767	CEP83 (ENSPPAG00000038283) #7	PLXNC1 (ENSPPAG00000041664) #8	ENSPPAG00000033933 #9	ENSPPAG00000031890	ENSPPAG00000030048 #10	SOCS2 (ENSPPAG00000040884) #11	MRPL42 (ENSPPAG00000038254) #12	ENSPPAG00000028330 ##13	ENSPPAG00000035362 #14	ENSPPAG00000043536	EEA1 (ENSPPAG00000041822) #16	ENSPPAG00000044085 #18	ENSPPAG00000043982 #19	BTG1 (ENSPPAG00000043618) #22	DCN (ENSPPAG00000039448) #24	LUM (ENSPPAG00000027479) #25	KERA (ENSPPAG00000042356) #26	EPYC (ENSPPAG00000029056) #27	CCER1 (ENSPPAG00000003461)	ENSPPAG00000017362	ATP2B1 (ENSPPAG00000044122) #29	ENSPPAG00000014801	POC1B (ENSPPAG00000030897) #30	DUSP6 (ENSPPAG00000028930) #31	KITLG (ENSPPAG00000031443) #32	TMTC3 (ENSPPAG00000040761) #34	CEP290 (ENSPPAG00000027339) #35	C12orf29 (ENSPPAG00000042620) #36	C12orf50 (ENSPPAG00000035198)
Human	MODERN SPECIES	3	METAP2 (ENSG00000111142)	VEZT (ENSG00000028203)	FGD6 (ENSG00000180263)	NR2C1 (ENSG00000120798)	NDUFA12 (ENSG00000184752)	TMCC3 (ENSG00000057704)	CEP83 (ENSG00000173588) #7	PLXNC1 (ENSG00000136040) #8	CRADD (ENSG00000169372) #10	SOCS2 (ENSG00000120833) #11	MRPL42 (ENSG00000198015) #12	UBE2N (ENSG00000177889) ##13	NUDT4 (ENSG00000173598) #14	EEA1 (ENSG00000102189) #16	PLEKHG7 (ENSG00000187510) #18	BTG1 (ENSG00000133639) #22	DCN (ENSG00000011465) #24	LUM (ENSG00000139329) #25	KERA (ENSG00000139330) #26	EPYC (ENSG00000083782) #27	CCER1 (ENSG00000197651)	ATP2B1 (ENSG00000070961) #29	GALNT4 (ENSG00000257594)	POC1B-GALNT4 (ENSG00000259075)	POC1B (ENSG00000139323) #30	DUSP6 (ENSG00000139318) #31	KITLG (ENSG00000049130) #32	TMTC3 (ENSG00000139324) #34	CEP290 (ENSG00000198707) #35	C12orf29 (ENSG00000133641) #36	C12orf50 (ENSG00000165805)
Gorilla	MODERN SPECIES	3	ENSGGOG00000028504	ENSGGOG00000036546	ENSGGOG00000028247	CEP83 (ENSGGOG00000026256) #7	PLXNC1 (ENSGGOG00000002553) #8	CRADD (ENSGGOG00000025856) #10	SOCS2 (ENSGGOG00000010194) #11	MRPL42 (ENSGGOG00000022760) #12	ENSGGOG00000024332 ##13	ENSGGOG00000014324 #14	EEA1 (ENSGGOG00000005235) #16	ENSGGOG00000014096 #18	ENSGGOG00000014092 #19	ENSGGOG00000011891 #21	ENSGGOG00000011882 #20	ENSGGOG00000025615 #22	DCN (ENSGGOG00000003795) #24	LUM (ENSGGOG00000028361) #25	KERA (ENSGGOG00000009652) #26	EPYC (ENSGGOG00000012816) #27	CCER1 (ENSGGOG00000010742)	ATP2B1 (ENSGGOG00000014187) #29	ENSGGOG00000024502	POC1B (ENSGGOG00000008572) #30	DUSP6 (ENSGGOG00000027241) #31	KITLG (ENSGGOG00000021939) #32	ENSGGOG00000024578	TMTC3 (ENSGGOG00000012696) #34	CEP290 (ENSGGOG00000025227) #35	C12orf29 (ENSGGOG00000005986) #36	C12orf50 (ENSGGOG00000000185)
Orangutan	MODERN SPECIES	3	FGD6 (ENSPPYG00000004841)	NR2C1 (ENSPPYG00000004840)	NDUFA12 (ENSPPYG00000004839)	TMCC3 (ENSPPYG00000004838)	CEP83 (ENSPPYG00000004837) #7	PLXNC1 (ENSPPYG00000004836) #8	CRADD (ENSPPYG00000004835) #10	SOCS2 (ENSPPYG00000004834) #11	MRPL42 (ENSPPYG00000035988) #12	UBE2N (ENSPPYG00000035816) ##13	NUDT4 (ENSPPYG00000004831) #14	EEA1 (ENSPPYG00000004830) #16	PLEKHG7 (ENSPPYG00000004829) #18	ENSPPYG00000038840 #21	ENSPPYG00000041254 #20	BTG1 (ENSPPYG00000031127) #22	DCN (ENSPPYG00000004826) #24	LUM (ENSPPYG00000004825) #25	KERA (ENSPPYG00000004824) #26	EPYC (ENSPPYG00000004823) #27	CCER1 (ENSPPYG00000004822)	ATP2B1 (ENSPPYG00000004820) #29	POC1B (ENSPPYG00000004819)	DUSP6 (ENSPPYG00000004817) #31	ENSPPYG00000031818	KITLG (ENSPPYG00000036228) #32	TMTC3 (ENSPPYG00000004815) #34	CEP290 (ENSPPYG00000004814) #35	C12H12orf29 (ENSPPYG00000004813) #36	C12orf50 (ENSPPYG00000004812)	MGAT4C (ENSPPYG00000004811)
Gibbon	MODERN SPECIES		CEP83 (ENSNLEG00000005742) #7	PLXNC1 (ENSNLEG00000005722) #8	ENSNLEG00000034769	ENSNLEG00000030035 #9	CRADD (ENSNLEG00000005714) #10	SOCS2 (ENSNLEG00000005710) #11	MRPL42 (ENSNLEG00000005699) #12	ENSNLEG00000005695 ##13	ENSNLEG00000005674 #14	EEA1 (ENSNLEG00000005649) #16	ENSNLEG00000029636	ENSNLEG00000005642 #18	ENSNLEG00000005638 #19	ENSNLEG00000005634 #20	ENSNLEG00000005637 #21	BTG1 (ENSNLEG00000029316) #22	DCN (ENSNLEG00000005597) #24	LUM (ENSNLEG00000005594) #25	KERA (ENSNLEG00000005587) #26	EPYC (ENSNLEG00000005578) #27	ENSNLEG00000028183	ENSNLEG00000028489	ATP2B1 (ENSNLEG00000005548) #29	POC1B (ENSNLEG00000034847) #30	ENSNLEG00000032235	DUSP6 (ENSNLEG00000028083) #31	KITLG (ENSNLEG00000005483) #32	TMTC3 (ENSNLEG00000005456) #34	CEP290 (ENSNLEG00000005417) #35	C12orf29 (ENSNLEG00000005396) #36	C12orf50 (ENSNLEG00000005395)
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00950000182952.C.pc #22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00950000182952.C.pc #22
Cercopithecinae_a	DUPLICATION
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00530000063353.a.b.a	ENSGT00940000160831	ENSGT00940000157334	ENSGT00940000156535	ENSGT00390000003223.u	ENSGT00390000015655.b	ENSGT01030000237275	ENSGT00910000147104	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00530000063669.b	ENSGT00940000158188	ENSGT00940000153528.a.b.a.b	ENSGT00950000182952.C.pc.a #22	ENSGT01090000260070.A	ENSGT00910000147797	ENSGT00950000182878.b.a.c.a.a.a.b.a	ENSGT00910000147133	ENSGT00940000153288.a.b.a.b.m.b	ENSGT00940000155906.s	ENSGT01030000234623.a.a.a.a.b	ENSGT00530000064264	ENSGT00940000156713	ENSGT00950000183182.a.b	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000160565	ENSGT00730000111285	ENSGT00940000159202
Macaca	ANCESTRAL SPECIES	9	ENSGT01050000244879.b.a.b.b	ENSGT00530000063353.a.b.a	ENSGT00940000160831	ENSGT00940000157334	ENSGT00940000156535	ENSGT00390000003223.u	ENSGT00390000015655.b	ENSGT00910000147104	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00530000063669.b	ENSGT00940000158188	ENSGT00940000153528.a.b.a.b	ENSGT00950000182952.C.pc.a #22	ENSGT01090000260070.A	ENSGT00910000147797	ENSGT00950000182878.b.a.c.a.a.a.b.a	ENSGT00910000147133	ENSGT00940000153288.a.b.a.b.m.b	ENSGT00940000155906.s	ENSGT01030000234623.a.a.a.a.b	ENSGT00530000064264	ENSGT00940000156713	ENSGT00950000183182.a.b	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000154639.o.a	ENSGT00940000160565	ENSGT00730000111285
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00640000091497.b	ENSGT00940000158416	ENSGT01050000244879.b.a.b.b	ENSGT00530000063353.a.b.a	ENSGT00940000160831	ENSGT00940000157334	ENSGT00940000156535	ENSGT00390000003223.u	ENSGT00390000015655.b	ENSGT00620000087993.a.a	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00530000063669.b	ENSGT00940000158188	ENSGT00940000153528.a.b.a.b	ENSGT00950000182952.C.pc.a #22	ENSGT01090000260070.A	ENSGT00910000147797	ENSGT00980000202068.a.b.a.a.b.a.a.a	ENSGT00940000155906.s	ENSGT01030000234623.a.a.a.a.b	ENSGT00530000064264	ENSGT00940000156713	ENSGT00950000183182.a.b	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000154639.o.a	ENSGT00940000160565	ENSGT00730000111285	ENSGT00940000159202	ENSGT00390000009937
Crab-eating macaque	MODERN SPECIES	14	RFX6 (ENSMFAG00000000913)	ENSMFAG00000039023	ROS1 (ENSMFAG00000001072)	DCBLD1 (ENSMFAG00000033065)	GOPC (ENSMFAG00000032714)	ENSMFAG00000063596	NUS1 (ENSMFAG00000051605)	SLC35F1 (ENSMFAG00000043289)	CEP85L (ENSMFAG00000000904)	MCM9 (ENSMFAG00000002788)	ASF1A (ENSMFAG00000035748)	FAM184A (ENSMFAG00000033715)	MAN1A1 (ENSMFAG00000039714)	ENSMFAG00000064198	TBC1D32 (ENSMFAG00000038607)	ENSMFAG00000030219 #22	GJA1 (ENSMFAG00000038903)	ENSMFAG00000063903	ENSMFAG00000062815	ENSMFAG00000056798	ENSMFAG00000008966	ENSMFAG00000030715	HSF2 (ENSMFAG00000032811)	SERINC1 (ENSMFAG00000043662)	PKIB (ENSMFAG00000033587)	FABP7 (ENSMFAG00000045709)	SMPDL3A (ENSMFAG00000043472)	CLVS2 (ENSMFAG00000003285)	ENSMFAG00000064738	TRDN (ENSMFAG00000000095)	NKAIN2 (ENSMFAG00000034602)
Rhesus	MODERN SPECIES	14	RFX6 (ENSMMUG00000017189)	VGLL2 (ENSMMUG00000023737)	ROS1 (ENSMMUG00000023738)	DCBLD1 (ENSMMUG00000017558)	NUS1 (ENSMMUG00000059327)	ENSMMUG00000053187	SLC35F1 (ENSMMUG00000022354)	CEP85L (ENSMMUG00000022184)	ENSMMUG00000055852	MCM9 (ENSMMUG00000008525)	ASF1A (ENSMMUG00000008526)	FAM184A (ENSMMUG00000013302)	MAN1A1 (ENSMMUG00000013304)	ENSMMUG00000051634	TBC1D32 (ENSMMUG00000017715)	ENSMMUG00000006198 #22	GJA1 (ENSMMUG00000005225)	ENSMMUG00000063706	ENSMMUG00000015269	HSF2 (ENSMMUG00000007910)	SERINC1 (ENSMMUG00000007911)	PKIB (ENSMMUG00000040423)	FABP7 (ENSMMUG00000064586)	SMPDL3A (ENSMMUG00000054098)	CLVS2 (ENSMMUG00000018176)	TRDN (ENSMMUG00000009725)	ENSMMUG00000065276	NKAIN2 (ENSMMUG00000013322)	ENSMMUG00000052345	ENSMMUG00000062783	ENSMMUG00000060047
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00940000158416	ENSGT01050000244879.b.a.b.b	ENSGT00530000063353.a.b.a	ENSGT00940000160831	ENSGT00940000157334	ENSGT00940000156535	ENSGT00390000003223.u	ENSGT00390000015655.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00530000063669.b	ENSGT00940000158188	ENSGT00940000153528.a.b.a.b	ENSGT00950000182952.C.pc.a #22	ENSGT01090000260070.A	ENSGT00950000182878.b.a.c.a.a.a.b.a	ENSGT00910000147133	ENSGT00940000153288.a.b.a.b.m.b	ENSGT00940000155906.s	ENSGT01030000234623.a.a.a.a.b	ENSGT00530000064264	ENSGT00940000156713	ENSGT00950000183182.a.b	ENSGT00940000157632	ENSGT00510000049207	ENSGT00940000160565	ENSGT00730000111285	ENSGT00940000159202	ENSGT00390000009937
Cercopithecinae_d	ANCESTRAL SPECIES	70	ENSGT00940000158416	ENSGT01050000244879.b.a.b.b	ENSGT00530000063353.a.b.a	ENSGT00940000160831	ENSGT00940000157334	ENSGT00940000156535	ENSGT00390000003223.u	ENSGT00390000015655.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000004692.d.b	ENSGT01090000260080.b.a	ENSGT00530000063669.b	ENSGT00940000158188	ENSGT00940000153528.a.b.a.b	ENSGT00950000182952.C.pc.a #22	ENSGT00950000182878.b.a.c.a.a.a.b.a	ENSGT00910000147133	ENSGT00940000153288.a.b.a.b.m.b	ENSGT00940000155906.s	ENSGT01030000234623.a.a.a.a.b
Sooty mangabey	MODERN SPECIES	590	RFX6 (ENSCATG00000034545)	VGLL2 (ENSCATG00000038510)	ROS1 (ENSCATG00000021312)	ENSCATG00000022159	DCBLD1 (ENSCATG00000033783)	GOPC (ENSCATG00000037476)	NUS1 (ENSCATG00000039106)	SLC35F1 (ENSCATG00000039775)	CEP85L (ENSCATG00000040491)	PLN (ENSCATG00000011577)	MCM9 (ENSCATG00000039701)	ASF1A (ENSCATG00000037391)	FAM184A (ENSCATG00000025253)	MAN1A1 (ENSCATG00000029459)	TBC1D32 (ENSCATG00000033200)	ENSCATG00000022339 #22	ENSCATG00000038664	ENSCATG00000007377	HSF2 (ENSCATG00000034181)	SERINC1 (ENSCATG00000039871)
Olive baboon	MODERN SPECIES	16	SLC35F1 (ENSPANG00000018515)	ENSPANG00000050580	PLN (ENSPANG00000003332)	CEP85L (ENSPANG00000007396)	ASF1A (ENSPANG00000009918)	MCM9 (ENSPANG00000012446)	FAM184A (ENSPANG00000022689)	MAN1A1 (ENSPANG00000019275)	ENSPANG00000050637	ENSPANG00000038876	ENSPANG00000045668	ENSPANG00000043223	TBC1D32 (ENSPANG00000025128)	ENSPANG00000047770	ENSPANG00000045220	ENSPANG00000006118 #22	GJA1 (ENSPANG00000003060)	ENSPANG00000041583	ENSPANG00000048941	HSF2 (ENSPANG00000022516)	SERINC1 (ENSPANG00000021642)	PKIB (ENSPANG00000023568)	SMPDL3A (ENSPANG00000000315)	CLVS2 (ENSPANG00000003404)	TRDN (ENSPANG00000033731)	NKAIN2 (ENSPANG00000020087)	RNF217 (ENSPANG00000018473)	TPD52L1 (ENSPANG00000022517)	HDDC2 (ENSPANG00000016874)	ENSPANG00000043498	HEY2 (ENSPANG00000030951)
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00950000182952.C.pc.b #22
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00430000033088 #21	ENSGT00410000029301 #20	ENSGT00950000182952.C.pc.b #22	ENSGT00390000018086.o.b.b	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Cercopithecinae_d	ANCESTRAL SPECIES	5	ENSGT00910000147837	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.a.a.n #13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00430000033088 #21	ENSGT00410000029301 #20	ENSGT00950000182952.C.pc.b #22	ENSGT00390000018086.o.b.b	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Sooty mangabey	MODERN SPECIES	388													ENSCATG00000029456 #19	ENSCATG00000010783 #21	ENSCATG00000035311 #20	ENSCATG00000030442 #22	ENSCATG00000043183	DCN (ENSCATG00000032641) #24	LUM (ENSCATG00000028327) #25
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00430000033088 #21	ENSGT00410000029301 #20	ENSGT00950000182952.C.qc #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Rhinopithecus	ANCESTRAL SPECIES	88	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00390000008196.g.b.b	ENSGT00940000156910 #16	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00430000033088 #21	ENSGT00410000029301 #20	ENSGT00950000182952.C.qc #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31
Golden snub-nosed monkey	MODERN SPECIES	2463	CEP83 (ENSRROG00000040194) #7	PLXNC1 (ENSRROG00000002550) #8	ENSRROG00000000058 #9	CRADD (ENSRROG00000042918) #10	SOCS2 (ENSRROG00000044983) #11	MRPL42 (ENSRROG00000033949) #12	UBE2N (ENSRROG00000038745) ##13	ENSRROG00000039703 #14	ENSRROG00000044247	EEA1 (ENSRROG00000033502) #16	ENSRROG00000015746	PLEKHG7 (ENSRROG00000043886) #18	ENSRROG00000043494 #19	ENSRROG00000034318 #20	ENSRROG00000034343 #21	BTG1 (ENSRROG00000034918) #22	DCN (ENSRROG00000033436) #24	LUM (ENSRROG00000044512) #25	KERA (ENSRROG00000038824) #26	EPYC (ENSRROG00000020682) #27	CCER1 (ENSRROG00000038633)
Black snub-nosed monkey	MODERN SPECIES	247	ENSRBIG00000031183	CEP83 (ENSRBIG00000028010) #7	PLXNC1 (ENSRBIG00000002209) #8	ENSRBIG00000029563 #9	CRADD (ENSRBIG00000008849) #10	SOCS2 (ENSRBIG00000028666) #11	ENSRBIG00000029739	ENSRBIG00000044361 #12	ENSRBIG00000041083 #14	ENSRBIG00000042548	EEA1 (ENSRBIG00000033284) #16	PLEKHG7 (ENSRBIG00000042939) #18	ENSRBIG00000025951 #19	ENSRBIG00000044583 #21	ENSRBIG00000041392 #20	BTG1 (ENSRBIG00000031713) #22	DCN (ENSRBIG00000019558) #24	LUM (ENSRBIG00000021434) #25	KERA (ENSRBIG00000029673) #26	EPYC (ENSRBIG00000044397) #27	CCER1 (ENSRBIG00000028059)	ENSRBIG00000026791	ENSRBIG00000036719	ATP2B1 (ENSRBIG00000032700) #29	CNTNAP5 (ENSRBIG00000043033)	SLC9A3 (ENSRBIG00000034086)	EXOC3 (ENSRBIG00000027923)	AHRR (ENSRBIG00000034863)
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00430000033088 #21	ENSGT00410000029301 #20	ENSGT00950000182952.C.qc #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Vervet Monkey	MODERN SPECIES	2	NR2C1 (ENSCSAG00000003648)	NDUFA12 (ENSCSAG00000003652)	TMCC3 (ENSCSAG00000003657)	CEP83 (ENSCSAG00000003663) #7	PLXNC1 (ENSCSAG00000003684) #8	ENSCSAG00000003695 #10	CRADD (ENSCSAG00000003700) #10	SOCS2 (ENSCSAG00000003703) #11	MRPL42 (ENSCSAG00000003706) #12	UBE2N (ENSCSAG00000003709) ##13	ENSCSAG00000003713 #14	EEA1 (ENSCSAG00000003719) #16	ENSCSAG00000003722	PLEKHG7 (ENSCSAG00000003727) #18	ENSCSAG00000018931	BTG1 (ENSCSAG00000003730) #22	DCN (ENSCSAG00000003736) #24	LUM (ENSCSAG00000003741) #25	KERA (ENSCSAG00000003747) #26	EPYC (ENSCSAG00000003752) #27	CCER1 (ENSCSAG00000003756)	ENSCSAG00000003759	ATP2B1 (ENSCSAG00000003766) #29	POC1B (ENSCSAG00000003775) #30	DUSP6 (ENSCSAG00000003778) #31	ENSCSAG00000018928	KITLG (ENSCSAG00000003781) #32	TMTC3 (ENSCSAG00000003785) #34	CEP290 (ENSCSAG00000003796) #35	C12orf29 (ENSCSAG00000003808) #36	C12orf50 (ENSCSAG00000003820)
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00430000033088 #21	ENSGT00950000182952.C.qc #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448.h #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000183185.c.a.a.t	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00430000033088 #21	ENSGT00950000182952.C.qc #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448.h #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.a.b.a	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00950000182952.C.qc #22	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.b.a.b	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00950000183107.a.b.a.tb.b	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Crab-eating macaque	MODERN SPECIES	2	ENSMFAG00000065285	ENSMFAG00000039287 #8	ENSMFAG00000049795	ENSMFAG00000049279	CRADD (ENSMFAG00000043923) #10	SOCS2 (ENSMFAG00000031234) #11	MRPL42 (ENSMFAG00000032330) #12	ENSMFAG00000047633	ENSMFAG00000000379 #13	ENSMFAG00000059302 #14	ENSMFAG00000047787	ENSMFAG00000056451	EEA1 (ENSMFAG00000000038) #16	PLEKHG7 (ENSMFAG00000034199) #18	ENSMFAG00000003136 #20	BTG1 (ENSMFAG00000055039) #22	ENSMFAG00000058222	DCN (ENSMFAG00000037651) #24	LUM (ENSMFAG00000036088) #25	KERA (ENSMFAG00000041597) #26	EPYC (ENSMFAG00000033919) #27	ENSMFAG00000053136	ATP2B1 (ENSMFAG00000045257) #29	POC1B (ENSMFAG00000043490) #30	DUSP6 (ENSMFAG00000038546) #31	KITLG (ENSMFAG00000054618) #32	TMTC3 (ENSMFAG00000046285) #34	CEP290 (ENSMFAG00000038682) #35	C12orf29 (ENSMFAG00000032876) #36	C12orf50 (ENSMFAG00000039647)	ENSMFAG00000061681
Rhesus	MODERN SPECIES	2	ENSMMUG00000056553	TMCC3 (ENSMMUG00000018242)	CEP83 (ENSMMUG00000018239) #7	PLXNC1 (ENSMMUG00000018237) #8	CRADD (ENSMMUG00000012670) #10	ENSMMUG00000056517 #10	SOCS2 (ENSMMUG00000054674) #11	MRPL42 (ENSMMUG00000016805) #12	UBE2N (ENSMMUG00000020634) ##13	NUDT4 (ENSMMUG00000064953) #14	ENSMMUG00000050504	EEA1 (ENSMMUG00000002244) #16	PLEKHG7 (ENSMMUG00000002243) #18	ENSMMUG00000062773 #19	ENSMMUG00000049117 #20	BTG1 (ENSMMUG00000050631) #22	ENSMMUG00000059975	ENSMMUG00000058404	ENSMMUG00000063287	DCN (ENSMMUG00000016997) #24	LUM (ENSMMUG00000016995) #25	KERA (ENSMMUG00000051017) #26	EPYC (ENSMMUG00000011300) #27	CCER1 (ENSMMUG00000010912)	ENSMMUG00000000147	ATP2B1 (ENSMMUG00000023378) #29	POC1B (ENSMMUG00000003574) #30	DUSP6 (ENSMMUG00000054968) #31	KITLG (ENSMMUG00000051340) #32	TMTC3 (ENSMMUG00000015864) #34	CEP290 (ENSMMUG00000015862) #35
Pig-tailed macaque	MODERN SPECIES	588	ENSMNEG00000005556	CEP83 (ENSMNEG00000029174) #7	PLXNC1 (ENSMNEG00000029540) #8	ENSMNEG00000035127 #9	CRADD (ENSMNEG00000030892) #10	SOCS2 (ENSMNEG00000028971) #11	MRPL42 (ENSMNEG00000028853) #12	UBE2N (ENSMNEG00000040126) ##13	ENSMNEG00000039076 #14	EEA1 (ENSMNEG00000002425) #16	ENSMNEG00000035731	PLEKHG7 (ENSMNEG00000030654) #18	ENSMNEG00000034688 #19	ENSMNEG00000031694 #20	ENSMNEG00000043272 #21	BTG1 (ENSMNEG00000039231) #22	DCN (ENSMNEG00000041455) #24	LUM (ENSMNEG00000029372) #25	KERA (ENSMNEG00000033316) #26	EPYC (ENSMNEG00000038088) #27	ENSMNEG00000029890	ENSMNEG00000029379	ATP2B1 (ENSMNEG00000042320) #29	POC1B (ENSMNEG00000040128) #30	DUSP6 (ENSMNEG00000042616) #31	KITLG (ENSMNEG00000041931) #32	TMTC3 (ENSMNEG00000000847) #34	CEP290 (ENSMNEG00000041840) #35	C12orf29 (ENSMNEG00000042920) #36	C12orf50 (ENSMNEG00000030237)	ENSMNEG00000044276
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00950000182952.C.qc #22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00950000182952.C.qc #22
Drill	MODERN SPECIES	694																BTG1 (ENSMLEG00000021357) #22
Olive baboon	MODERN SPECIES	19	ENSPANG00000022780	TMCC3 (ENSPANG00000006620)	CEP83 (ENSPANG00000020390) #7	PLXNC1 (ENSPANG00000019455) #8	ENSPANG00000042478	CRADD (ENSPANG00000000483) #10	SOCS2 (ENSPANG00000000482) #11	MRPL42 (ENSPANG00000030179) #12	UBE2N (ENSPANG00000036061) ##13	ENSPANG00000001006 #14	ENSPANG00000048776	ENSPANG00000046377	EEA1 (ENSPANG00000012190) #16	PLEKHG7 (ENSPANG00000010989) #18	ENSPANG00000001912 #20	BTG1 (ENSPANG00000047180) #22	ENSPANG00000040226	ENSPANG00000043992	DCN (ENSPANG00000011237) #24	LUM (ENSPANG00000016364) #25	KERA (ENSPANG00000007908) #26	EPYC (ENSPANG00000012063) #27	CCER1 (ENSPANG00000050482)	ENSPANG00000050618	ATP2B1 (ENSPANG00000012255) #29	POC1B (ENSPANG00000015875) #30	DUSP6 (ENSPANG00000044321) #31	ENSPANG00000039666	KITLG (ENSPANG00000017126) #32	TMTC3 (ENSPANG00000022133) #34	CEP290 (ENSPANG00000004601) #35
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.d ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.s	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.cb.a #12	ENSGT00540000070023.d ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Mouse lemur	MODERN SPECIES	29	VEZT (ENSMICG00000031583)	FGD6 (ENSMICG00000005866)	NR2C1 (ENSMICG00000005857)	ENSMICG00000014848	ENSMICG00000032833	TMCC3 (ENSMICG00000038267)	CEP83 (ENSMICG00000016681) #7	PLXNC1 (ENSMICG00000016660) #8	CRADD (ENSMICG00000010191) #10	ENSMICG00000047969 #11	ENSMICG00000032596 #12	ENSMICG00000036780 ##13	ENSMICG00000031655 #14	EEA1 (ENSMICG00000015611) #16	PLEKHG7 (ENSMICG00000032406) #18	BTG1 (ENSMICG00000009227) #22	DCN (ENSMICG00000028201) #24	LUM (ENSMICG00000000377) #25	KERA (ENSMICG00000000375) #26	EPYC (ENSMICG00000017312) #27	CCER1 (ENSMICG00000046045)	ATP2B1 (ENSMICG00000005120) #29	POC1B (ENSMICG00000033443) #30	DUSP6 (ENSMICG00000005109) #31	KITLG (ENSMICG00000027108) #32	TMTC3 (ENSMICG00000032189) #34	ENSMICG00000028980	CEP290 (ENSMICG00000008089) #35	ENSMICG00000008083 #36	C12orf50 (ENSMICG00000008075)	ENSMICG00000035359
Lemuriformes_a	ANCESTRAL SPECIES	47	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.s	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.cb.a #12	ENSGT00540000070023.d ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Coquerels sifaka	MODERN SPECIES	968	METAP2 (ENSPCOG00000016978)	ENSPCOG00000001316	VEZT (ENSPCOG00000019402)	FGD6 (ENSPCOG00000020148)	NR2C1 (ENSPCOG00000021750)	NDUFA12 (ENSPCOG00000021872)	TMCC3 (ENSPCOG00000015961)	CEP83 (ENSPCOG00000019573) #7	PLXNC1 (ENSPCOG00000027273) #8	CRADD (ENSPCOG00000024617) #10	ENSPCOG00000021688 ##13	ENSPCOG00000024689 #14	EEA1 (ENSPCOG00000025462) #16	PLEKHG7 (ENSPCOG00000021727) #18	ENSPCOG00000013237 #19	BTG1 (ENSPCOG00000009296) #22	DCN (ENSPCOG00000017826) #24	KERA (ENSPCOG00000022027) #26	EPYC (ENSPCOG00000010824) #27	CCER1 (ENSPCOG00000016134)
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	710														EEA1 (ENSPSMG00000012167) #16	PLEKHG7 (ENSPSMG00000012087) #18	ENSPSMG00000012072 #22	DCN (ENSPSMG00000012019) #24	LUM (ENSPSMG00000011955) #25	KERA (ENSPSMG00000011947) #26	EPYC (ENSPSMG00000011941) #27	CCER1 (ENSPSMG00000011926)	ATP2B1 (ENSPSMG00000011587) #29	POC1B (ENSPSMG00000011133) #30
Greater bamboo lemur	MODERN SPECIES	1419																ENSPSMG00000006778 #22
Bushbaby	MODERN SPECIES	122	ENSOGAG00000008469	VEZT (ENSOGAG00000011835)	FGD6 (ENSOGAG00000011825)	NR2C1 (ENSOGAG00000011821)	NDUFA12 (ENSOGAG00000010853)	CEP83 (ENSOGAG00000006072) #7	ENSOGAG00000029202 #8	ENSOGAG00000006063	CRADD (ENSOGAG00000025620) #10	SOCS2 (ENSOGAG00000000104) #11	ENSOGAG00000034461 ##13	ENSOGAG00000000101 #14	EEA1 (ENSOGAG00000001276) #16	ENSOGAG00000001272 #18	ENSOGAG00000024825 #19	BTG1 (ENSOGAG00000026483) #22	DCN (ENSOGAG00000008617) #24	LUM (ENSOGAG00000025875) #25	KERA (ENSOGAG00000008613) #26	EPYC (ENSOGAG00000008610) #27	CCER1 (ENSOGAG00000032642)	ATP2B1 (ENSOGAG00000008271) #29	POC1B (ENSOGAG00000008265) #30	DUSP6 (ENSOGAG00000029015) #31	KITLG (ENSOGAG00000009638) #32	TMTC3 (ENSOGAG00000010801) #34	CEP290 (ENSOGAG00000010791) #35	C12orf29 (ENSOGAG00000010788) #36	C12orf50 (ENSOGAG00000006837)	ENSOGAG00000034474	ENSOGAG00000032440
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	7426																ENSTBEG00000014747 #22
Tree shrew	MODERN SPECIES	9222																ENSTBEG00000008631 #22
Glires	ANCESTRAL SPECIES	4	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Rodentia	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	42	Ccdc38 (ENSJJAG00000013539)	ENSJJAG00000011272	Ntn4 (ENSJJAG00000009845)	ENSJJAG00000016408	Vezt (ENSJJAG00000023035)	Fgd6 (ENSJJAG00000015874)	Nr2c1 (ENSJJAG00000017174)	Ndufa12 (ENSJJAG00000008129)	ENSJJAG00000001738	Tmcc3 (ENSJJAG00000016753)	Cep83 (ENSJJAG00000018283) #7	ENSJJAG00000011221 #8	Cradd (ENSJJAG00000019223) #10	ENSJJAG00000011721 #13	Eea1 (ENSJJAG00000011838) #16	ENSJJAG00000003396 #22	Dcn (ENSJJAG00000018394) #24	Lum (ENSJJAG00000016615) #25	Kera (ENSJJAG00000010866) #26	Epyc (ENSJJAG00000015074) #27	Atp2b1 (ENSJJAG00000014291) #29	Poc1b (ENSJJAG00000013503) #30	ENSJJAG00000005687 #31	Kitl (ENSJJAG00000021051) #32	Tmtc3 (ENSJJAG00000013597) #34	Cep290 (ENSJJAG00000002440) #35	4930430F08Rik (ENSJJAG00000013569) #36	1700017N19Rik (ENSJJAG00000023823)	Mgat4c (ENSJJAG00000021989)	Nts (ENSJJAG00000014653)	Rassf9 (ENSJJAG00000013251)
Lesser Egyptian jerboa	MODERN SPECIES	42	Ribc2 (ENSJJAG00000021212)	Fbln1 (ENSJJAG00000022397)	Atxn10 (ENSJJAG00000021073)	Wnt7b (ENSJJAG00000019892)	Ppara (ENSJJAG00000020917)	Cdpf1 (ENSJJAG00000020066)	Pkdrej (ENSJJAG00000021330)	Ttc38 (ENSJJAG00000021274)	Gtse1 (ENSJJAG00000020084)	Trmu (ENSJJAG00000000667)	Celsr1 (ENSJJAG00000023159)	Gramd4 (ENSJJAG00000022516)	Cerk (ENSJJAG00000022131)	Tbc1d22a (ENSJJAG00000022725)	Tafa5 (ENSJJAG00000022146)	ENSJJAG00000022456 #22	ENSJJAG00000020987	Brd1 (ENSJJAG00000021894)	Alg12 (ENSJJAG00000021461)	Creld2 (ENSJJAG00000011752)	Pim3 (ENSJJAG00000023071)	Ttll8 (ENSJJAG00000011488)	Mlc1 (ENSJJAG00000017316)	Mov10l1 (ENSJJAG00000007026)	Panx2 (ENSJJAG00000022586)	Trabd (ENSJJAG00000002026)	Selenoo (ENSJJAG00000011247)	Tubgcp6 (ENSJJAG00000001268)	ENSJJAG00000010762	Mapk12 (ENSJJAG00000023055)	Mapk11 (ENSJJAG00000022908)
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Upper Galilee mountains blind mole rat	MODERN SPECIES	512							ENSNGAG00000024338 #10	Socs2 (ENSNGAG00000013240) #11	Mrpl42 (ENSNGAG00000000717) #12	Ube2n (ENSNGAG00000013689) ##13	Nudt4 (ENSNGAG00000023320) #14	ENSNGAG00000012929	ENSNGAG00000006958	Eea1 (ENSNGAG00000024349) #16	ENSNGAG00000009583	Btg1 (ENSNGAG00000024134) #22	Dcn (ENSNGAG00000001057) #24	Lum (ENSNGAG00000010684) #25	Kera (ENSNGAG00000012487) #26	Epyc (ENSNGAG00000002171) #27	Ccer1 (ENSNGAG00000005210)	Atp2b1 (ENSNGAG00000013753) #29	Poc1b (ENSNGAG00000019321) #30	Dusp6 (ENSNGAG00000023285) #31	ENSNGAG00000004971	Kitl (ENSNGAG00000006563) #32	Tmtc3 (ENSNGAG00000015646) #34	Cep290 (ENSNGAG00000018519) #35	4930430F08Rik (ENSNGAG00000022800) #36	1700017N19Rik (ENSNGAG00000022882)
Muroidea_A	DUPLICATION
Muroidea_A	DUPLICATION
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.d.s ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Cricetidae_B	ANCESTRAL SPECIES	29	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.d.s ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Prairie vole	MODERN SPECIES	10	Usp44 (ENSMOCG00000020189)	ENSMOCG00000013555	ENSMOCG00000020971	Vezt (ENSMOCG00000000685)	Fgd6 (ENSMOCG00000017458)	Nr2c1 (ENSMOCG00000006925)	Ndufa12 (ENSMOCG00000013678)	Tmcc3 (ENSMOCG00000012369)	Cep83 (ENSMOCG00000010672) #7	Plxnc1 (ENSMOCG00000014781) #8	Cradd (ENSMOCG00000000329) #10	ENSMOCG00000019732 #11	ENSMOCG00000013541 #12	Nudt4 (ENSMOCG00000003024) #14	Eea1 (ENSMOCG00000008700) #16	Btg1 (ENSMOCG00000012463) #22	Dcn (ENSMOCG00000011845) #24	Lum (ENSMOCG00000001159) #25	Kera (ENSMOCG00000020045) #26	Epyc (ENSMOCG00000008447) #27	Ccer1 (ENSMOCG00000009249)	Atp2b1 (ENSMOCG00000012513) #29	Poc1b (ENSMOCG00000015822) #30	Dusp6 (ENSMOCG00000011753) #31	ENSMOCG00000003349	Kitl (ENSMOCG00000018911) #32	Tmtc3 (ENSMOCG00000007538) #34	Cep290 (ENSMOCG00000010037) #35	4930430F08Rik (ENSMOCG00000021234) #36	1700017N19Rik (ENSMOCG00000017688)	Mgat4c (ENSMOCG00000012409)
Northern American deer mouse	MODERN SPECIES	9	ENSPEMG00000027065	Fgd6 (ENSPEMG00000000975)	Nr2c1 (ENSPEMG00000011087)	Ndufa12 (ENSPEMG00000023653)	Tmcc3 (ENSPEMG00000022879)	Cep83 (ENSPEMG00000019426) #7	Plxnc1 (ENSPEMG00000019499) #8	ENSPEMG00000021950	Cradd (ENSPEMG00000013349) #10	Socs2 (ENSPEMG00000027596) #11	ENSPEMG00000020562 #12	ENSPEMG00000029432 ##13	Nudt4 (ENSPEMG00000021026) #14	Eea1 (ENSPEMG00000010629) #16	ENSPEMG00000003344	Btg1 (ENSPEMG00000030029) #22	Dcn (ENSPEMG00000019308) #24	Lum (ENSPEMG00000019303) #25	Kera (ENSPEMG00000013253) #26	Epyc (ENSPEMG00000019173) #27	Ccer1 (ENSPEMG00000019732)	ENSPEMG00000019550 #29	Poc1b (ENSPEMG00000020051) #30	Dusp6 (ENSPEMG00000026221) #31	Kitl (ENSPEMG00000019688) #32	Tmtc3 (ENSPEMG00000000749) #34	Cep290 (ENSPEMG00000008348) #35	4930430F08Rik (ENSPEMG00000016254) #36	1700017N19Rik (ENSPEMG00000010447)	Slc6a15 (ENSPEMG00000010154)	Lrriq1 (ENSPEMG00000012353)
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.a.a #13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Chinese hamster chok1gshd	MODERN SPECIES	83	Vezt (ENSCGRG00001016545)	Fgd6 (ENSCGRG00001022120)	Nr2c1 (ENSCGRG00001021503)	Ndufa12 (ENSCGRG00001023632)	Tmcc3 (ENSCGRG00001011362)	Cep83 (ENSCGRG00001017799) #7	Plxnc1 (ENSCGRG00001021705) #8	Cradd (ENSCGRG00001005469) #10	Socs2 (ENSCGRG00001007954) #11	ENSCGRG00001012694 #12	ENSCGRG00001014867 ##13	Nudt4 (ENSCGRG00001016406) #14	Gm17728 (ENSCGRG00001019515)	ENSCGRG00001022131	Eea1 (ENSCGRG00001007706) #16	Btg1 (ENSCGRG00001017332) #22	Dcn (ENSCGRG00001019795) #24	Lum (ENSCGRG00001024041) #25	Kera (ENSCGRG00001024292) #26	Epyc (ENSCGRG00001000236) #27	Ccer1 (ENSCGRG00001007933)	Atp2b1 (ENSCGRG00001018626) #29	Poc1b (ENSCGRG00001015662) #30	ENSCGRG00001009510	Dusp6 (ENSCGRG00001011335) #31	Kitl (ENSCGRG00001016450) #32	Tmtc3 (ENSCGRG00001019153) #34	Cep290 (ENSCGRG00001020423) #35	4930430F08Rik (ENSCGRG00001019742) #36	1700017N19Rik (ENSCGRG00001014381)	Mgat4c (ENSCGRG00001006307)
Golden Hamster	MODERN SPECIES	628	Ntn4 (ENSMAUG00000004210)	Usp44 (ENSMAUG00000000679)	ENSMAUG00000014524	Vezt (ENSMAUG00000011049)	Nr2c1 (ENSMAUG00000005656)	ENSMAUG00000009984	Tmcc3 (ENSMAUG00000001274)	Cep83 (ENSMAUG00000018689) #7	Plxnc1 (ENSMAUG00000021960) #8	Cradd (ENSMAUG00000022216) #10	Socs2 (ENSMAUG00000011777) #11	ENSMAUG00000018130 #12	ENSMAUG00000003983 #13	ENSMAUG00000008245 #14	Eea1 (ENSMAUG00000008757) #16	Btg1 (ENSMAUG00000020545) #22	Dcn (ENSMAUG00000021986) #24	Lum (ENSMAUG00000014903) #25	Kera (ENSMAUG00000022158) #26	Epyc (ENSMAUG00000017349) #27	Ccer1 (ENSMAUG00000009078)	Atp2b1 (ENSMAUG00000009310) #29	Poc1b (ENSMAUG00000021507) #30	Kitl (ENSMAUG00000016386) #32	Tmtc3 (ENSMAUG00000020385) #34	Cep290 (ENSMAUG00000022146) #35	4930430F08Rik (ENSMAUG00000013438) #36	ENSMAUG00000008756	ENSMAUG00000004735	Nts (ENSMAUG00000013146)	Rassf9 (ENSMAUG00000012420)
Murinae	ANCESTRAL SPECIES	22	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Mus	ANCESTRAL SPECIES	23	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00860000135975	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00900000143579	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00940000155526.b	ENSGT00390000006813.t	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35
Mus_A	ANCESTRAL SPECIES	11	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00860000135975	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.m #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00390000009724.l.i.b.a	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00900000143783	ENSGT00730000111529	ENSGT00900000143579	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00940000155526.b	ENSGT00390000006813.t	ENSGT00390000018272 #32	ENSGT00940000157538 #34
Mus_B	ANCESTRAL SPECIES	10	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00860000135975	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.m.b #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00390000009724.l.i.b.a.a.a	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00900000143783	ENSGT00730000111529	ENSGT00900000143579	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00940000155526.b	ENSGT00390000006813.t	ENSGT00390000018272 #32	ENSGT00940000157538 #34
Mouse	MODERN SPECIES	1	Vezt (ENSMUSG00000036099)	Fgd6 (ENSMUSG00000020021)	Nr2c1 (ENSMUSG00000005897)	Ndufa12 (ENSMUSG00000020022)	Tmcc3 (ENSMUSG00000020023)	Cep83 (ENSMUSG00000020024) #7	Plxnc1 (ENSMUSG00000074785) #8	Cradd (ENSMUSG00000045867) #10	Socs2 (ENSMUSG00000020027) #11	Mrpl42 (ENSMUSG00000062981) #12	Ube2n (ENSMUSG00000074781) ##13	Nudt4 (ENSMUSG00000020029) #14	Anapc15-ps (ENSMUSG00000074780)	Eea1 (ENSMUSG00000036499) #16	Gm5426 (ENSMUSG00000096486)	Btg1 (ENSMUSG00000036478) #22	Dcn (ENSMUSG00000019929) #24	Lum (ENSMUSG00000036446) #25	Kera (ENSMUSG00000019932) #26	Epyc (ENSMUSG00000019936) #27	Ccer1 (ENSMUSG00000047025)	Atp2b1 (ENSMUSG00000019943) #29	Poc1b (ENSMUSG00000019952) #30	Galnt4 (ENSMUSG00000090035)	Dusp6 (ENSMUSG00000019960) #31	Csl (ENSMUSG00000046934)	Kitl (ENSMUSG00000019966) #32	Gm4301 (ENSMUSG00000094314)	Gm4302 (ENSMUSG00000091101)	Gm4303 (ENSMUSG00000112931)	Gm4305 (ENSMUSG00000112856)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00860000135975	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.m.b #12	ENSGT00540000070023.c.a.a #13	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00390000009724.l.i.b.a.b	ENSGT00950000182952.C.xc.a #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00900000143783	ENSGT00730000111529	ENSGT00900000143579	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00940000155526.b	ENSGT00390000006813.t	ENSGT00390000018272 #32	ENSGT00940000157538 #34
Steppe mouse	MODERN SPECIES	3422	Tmcc3 (ENSMSIG00000016287)	Cep83 (ENSMSIG00000016257) #7	Plxnc1 (ENSMSIG00000016141) #8	Cradd (ENSMSIG00000016116) #10	ENSMSIG00000016093	ENSMSIG00000016056 #11	ENSMSIG00000016042	Mrpl42 (ENSMSIG00000015996) #12	ENSMSIG00000015978 #13	ENSMSIG00000015960 #14	ENSMSIG00000015942	ENSMSIG00000015896	Eea1 (ENSMSIG00000015697) #16	Gm5426 (ENSMSIG00000015678)	ENSMSIG00000015647	Btg1 (ENSMSIG00000015631) #22	ENSMSIG00000015628	Dcn (ENSMSIG00000015595) #24	Lum (ENSMSIG00000015574) #25	Kera (ENSMSIG00000015562) #26	Epyc (ENSMSIG00000015524) #27	Ccer1 (ENSMSIG00000015509)	ENSMSIG00000015503	Atp2b1 (ENSMSIG00000015351) #29	Poc1b (ENSMSIG00000015203) #30	Dusp6 (ENSMSIG00000015196) #31	ENSMSIG00000015181	ENSMSIG00000015162	ENSMSIG00000015150	Csl (ENSMSIG00000015137)	Kitl (ENSMSIG00000015054) #32
Ryukyu mouse	MODERN SPECIES	1	Fgd6 (MGP_CAROLIEiJ_G0015740)	Nr2c1 (MGP_CAROLIEiJ_G0015741)	Ndufa12 (MGP_CAROLIEiJ_G0015742)	MGP_CAROLIEiJ_G0015743	Tmcc3 (MGP_CAROLIEiJ_G0015744)	Cep83 (MGP_CAROLIEiJ_G0015745) #7	Plxnc1 (MGP_CAROLIEiJ_G0015746) #8	Cradd (MGP_CAROLIEiJ_G0015747) #10	Socs2 (MGP_CAROLIEiJ_G0015748) #11	MGP_CAROLIEiJ_G0015749	Mrpl42 (MGP_CAROLIEiJ_G0015750) #12	Ube2n (MGP_CAROLIEiJ_G0015751) ##13	Nudt4 (MGP_CAROLIEiJ_G0015752) #14	Eea1 (MGP_CAROLIEiJ_G0015753) #16	MGP_CAROLIEiJ_G0015754	Btg1 (MGP_CAROLIEiJ_G0015755) #22	Dcn (MGP_CAROLIEiJ_G0015756) #24	Lum (MGP_CAROLIEiJ_G0015757) #25	Kera (MGP_CAROLIEiJ_G0015758) #26	Epyc (MGP_CAROLIEiJ_G0015759) #27	MGP_CAROLIEiJ_G0015760	Ccer1 (MGP_CAROLIEiJ_G0015761)	Atp2b1 (MGP_CAROLIEiJ_G0015762) #29	Poc1b (MGP_CAROLIEiJ_G0015763) #30	Galnt4 (MGP_CAROLIEiJ_G0015764)	Dusp6 (MGP_CAROLIEiJ_G0015765) #31	MGP_CAROLIEiJ_G0015766	Csl (MGP_CAROLIEiJ_G0015767)	Kitl (MGP_CAROLIEiJ_G0015768) #32	Tmtc3 (MGP_CAROLIEiJ_G0015769) #34	Cep290 (MGP_CAROLIEiJ_G0015770) #35
Shrew mouse	MODERN SPECIES	22	Metap2 (MGP_PahariEiJ_G0031347)	Vezt (MGP_PahariEiJ_G0031346)	Fgd6 (MGP_PahariEiJ_G0031345)	Nr2c1 (MGP_PahariEiJ_G0031344)	Ndufa12 (MGP_PahariEiJ_G0031343)	MGP_PahariEiJ_G0031342	Tmcc3 (MGP_PahariEiJ_G0031341)	Cep83 (MGP_PahariEiJ_G0031340) #7	Plxnc1 (MGP_PahariEiJ_G0031339) #8	Cradd (MGP_PahariEiJ_G0031338) #10	MGP_PahariEiJ_G0031337 #11	MGP_PahariEiJ_G0031336 #11	Mrpl42 (MGP_PahariEiJ_G0031335) #12	Ube2n (MGP_PahariEiJ_G0031334) ##13	Eea1 (MGP_PahariEiJ_G0031333) #16	Btg1 (MGP_PahariEiJ_G0031332) #22	Dcn (MGP_PahariEiJ_G0031331) #24	Lum (MGP_PahariEiJ_G0031330) #25	Kera (MGP_PahariEiJ_G0031329) #26	Epyc (MGP_PahariEiJ_G0031328) #27	Ccer1 (MGP_PahariEiJ_G0031327)	MGP_PahariEiJ_G0031326	Atp2b1 (MGP_PahariEiJ_G0031325) #29	Galnt4 (MGP_PahariEiJ_G0031324)	Poc1b (MGP_PahariEiJ_G0031323) #30	Dusp6 (MGP_PahariEiJ_G0031322) #31	MGP_PahariEiJ_G0031321	Csl (MGP_PahariEiJ_G0031320)	Kitl (MGP_PahariEiJ_G0031319) #32	Tmtc3 (MGP_PahariEiJ_G0031318) #34	Cep290 (MGP_PahariEiJ_G0031317) #35
Rat	MODERN SPECIES	17	Fgd6 (ENSRNOG00000054515)	Nr2c1 (ENSRNOG00000006983)	Ndufa12 (ENSRNOG00000007407)	Tmcc3 (ENSRNOG00000007713)	LOC100363642 (ENSRNOG00000007859) #7	Plxnc1 (ENSRNOG00000007970) #8	Cradd (ENSRNOG00000008507) #10	LOC103690821 (ENSRNOG00000050393)	Socs2 (ENSRNOG00000008965) #11	Mrpl42 (ENSRNOG00000042740) #12	Ube2n (ENSRNOG00000058053) ##13	Nudt4 (ENSRNOG00000009094) #14	AABR07056686.1 (ENSRNOG00000021688)	ENSRNOG00000063295	Eea1 (ENSRNOG00000021681) #16	Btg1 (ENSRNOG00000004284) #22	ENSRNOG00000068905	Dcn (ENSRNOG00000004554) #24	Lum (ENSRNOG00000004610) #25	Kera (ENSRNOG00000004635) #26	Epyc (ENSRNOG00000004717) #27	Ccer1 (ENSRNOG00000004875)	Atp2b1 (ENSRNOG00000004026) #29	Poc1b (ENSRNOG00000024450) #30	ENSRNOG00000069237	Dusp6 (ENSRNOG00000023896) #31	ENSRNOG00000067092	Kitlg (ENSRNOG00000005386) #32	Tmtc3 (ENSRNOG00000006749) #34	Cep290 (ENSRNOG00000056458) #35	RGD1307947 (ENSRNOG00000006973) #36
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT00940000161768.B	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00940000163385	ENSGT00920000149445	ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT01050000245028.C	ENSGT01050000245028.A	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.b.s	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000154400.b.d.b
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT00940000161768.B	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00920000149445.a	ENSGT00940000166354.a	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT01050000245028.C	ENSGT01050000245028.A	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.a.a.b	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000154400.b.d.b
Cricetinae	ANCESTRAL SPECIES	29	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT00940000161768.B	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00920000149445.a	ENSGT00940000166354.a	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT01050000245028.C	ENSGT01050000245028.A	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.a.a.b	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000154400.b.d.b	ENSGT00940000160686
Chinese hamster chok1gshd	MODERN SPECIES	16	ENSCGRG00001008147	Gria3 (ENSCGRG00001010277)	ENSCGRG00001000441	6030498E09Rik (ENSCGRG00001016358)	C1galt1c1 (ENSCGRG00001004167)	Mcts1 (ENSCGRG00001022838)	ENSCGRG00001000813	Lamp2 (ENSCGRG00001023305)	Tex13c3 (ENSCGRG00001016863)	Atp1b4 (ENSCGRG00001004737)	Tmem255a (ENSCGRG00001007359)	Zbtb33 (ENSCGRG00001007690)	Rhox12 (ENSCGRG00001000074)	ENSCGRG00001007488	ENSCGRG00001014368	ENSCGRG00001017971 #22	ENSCGRG00001000411	ENSCGRG00001019766	ENSCGRG00001009719	ENSCGRG00001016724	ENSCGRG00001015897	ENSCGRG00001012665	Rnf113a1 (ENSCGRG00001002251)	NDUFA1 (ENSCGRG00001004710)	Nkap (ENSCGRG00001013137)	ENSCGRG00001006858	ENSCGRG00001021449	Sowahd (ENSCGRG00001011517)	Septin6 (ENSCGRG00001014207)	Nkrf (ENSCGRG00001001105)	Ube2a (ENSCGRG00001007581)
Golden Hamster	MODERN SPECIES	761					C1galt1c1 (ENSMAUG00000015715)	Mcts1 (ENSMAUG00000000385)	Cul4b (ENSMAUG00000002566)	Lamp2 (ENSMAUG00000016372)	Tex13c3 (ENSMAUG00000001959)	Atp1b4 (ENSMAUG00000016959)	Tmem255a (ENSMAUG00000007801)	Zbtb33 (ENSMAUG00000008177)	Rhox12 (ENSMAUG00000012331)	ENSMAUG00000009678	Rhox10 (ENSMAUG00000017260)	ENSMAUG00000002213 #22	ENSMAUG00000004552	ENSMAUG00000016012	Ndufa1 (ENSMAUG00000000368)	Akap14 (ENSMAUG00000014839)	Nkap (ENSMAUG00000020220)	Upf3b (ENSMAUG00000008705)	ENSMAUG00000010952	Septin6 (ENSMAUG00000018038)	Nkrf (ENSMAUG00000021303)	Ube2a (ENSMAUG00000009245)	Steep1 (ENSMAUG00000019253)	Slc25a43 (ENSMAUG00000021574)	Akap17b (ENSMAUG00000001593)	Pgrmc1 (ENSMAUG00000009511)	ENSMAUG00000019877
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT00940000161768.B	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00920000149445.a	ENSGT00940000154287.a.g.b	ENSGT00940000166354.b	ENSGT00950000182952.C.xc.b #22
Northern American deer mouse	MODERN SPECIES	475	Thoc2 (ENSPEMG00000007626)	Gria3 (ENSPEMG00000020768)	ENSPEMG00000025713	ENSPEMG00000026463	C1galt1c1 (ENSPEMG00000003943)	Mcts1 (ENSPEMG00000014914)	Cul4b (ENSPEMG00000008902)	ENSPEMG00000030809	Tex13c3 (ENSPEMG00000006117)	Atp1b4 (ENSPEMG00000026754)	Tmem255a (ENSPEMG00000020511)	Zbtb33 (ENSPEMG00000023331)	ENSPEMG00000017846	ENSPEMG00000013786	ENSPEMG00000026490	ENSPEMG00000002101 #22	ENSPEMG00000025608	ENSPEMG00000017550	ENSPEMG00000029359	ENSPEMG00000027345	Pls3 (ENSPEMG00000000739)	ENSPEMG00000025081	Lrch2 (ENSPEMG00000023427)	ENSPEMG00000029813	ENSPEMG00000027327	ENSPEMG00000029369	Amot (ENSPEMG00000009135)	Lhfpl1 (ENSPEMG00000031060)	ENSPEMG00000026868	ENSPEMG00000026774	Rtl4 (ENSPEMG00000014794)
Murinae	ANCESTRAL SPECIES	72														ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22
Mus	ANCESTRAL SPECIES	9	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT00940000161768.B	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00940000163385	ENSGT00920000149445	ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT00730000112198.a.a	ENSGT00700000106005	ENSGT01050000245028.A	ENSGT01050000245028.C	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.b.s	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	23	Gria3 (MGP_PahariEiJ_G0031568)	6030498E09Rik (MGP_PahariEiJ_G0031567)	C1galt1c1 (MGP_PahariEiJ_G0031566)	Mcts1 (MGP_PahariEiJ_G0031565)	MGP_PahariEiJ_G0031564	Lamp2 (MGP_PahariEiJ_G0031563)	MGP_PahariEiJ_G0031562	Atp1b4 (MGP_PahariEiJ_G0031561)	Tmem255a (MGP_PahariEiJ_G0031560)	Zbtb33 (MGP_PahariEiJ_G0031559)	MGP_PahariEiJ_G0031558	Rhox12 (MGP_PahariEiJ_G0031557)	Rhox11 (MGP_PahariEiJ_G0031556)	Rhox10 (MGP_PahariEiJ_G0031555)	MGP_PahariEiJ_G0031554 #22	MGP_PahariEiJ_G0031553 #22	MGP_PahariEiJ_G0031552	MGP_PahariEiJ_G0031551	MGP_PahariEiJ_G0031550	MGP_PahariEiJ_G0031549	MGP_PahariEiJ_G0031548	Rnf113a1 (MGP_PahariEiJ_G0031547)	Ndufa1 (MGP_PahariEiJ_G0031546)	MGP_PahariEiJ_G0031545	Nkap (MGP_PahariEiJ_G0031544)	Upf3b (MGP_PahariEiJ_G0031543)	Rpl39 (MGP_PahariEiJ_G0031542)	Sowahd (MGP_PahariEiJ_G0031541)	MGP_PahariEiJ_G0031540	Nkrf (MGP_PahariEiJ_G0031539)	MGP_PahariEiJ_G0031538
Shrew mouse	MODERN SPECIES	23	Thoc2 (MGP_PahariEiJ_G0031569)	Gria3 (MGP_PahariEiJ_G0031568)	6030498E09Rik (MGP_PahariEiJ_G0031567)	C1galt1c1 (MGP_PahariEiJ_G0031566)	Mcts1 (MGP_PahariEiJ_G0031565)	MGP_PahariEiJ_G0031564	Lamp2 (MGP_PahariEiJ_G0031563)	MGP_PahariEiJ_G0031562	Atp1b4 (MGP_PahariEiJ_G0031561)	Tmem255a (MGP_PahariEiJ_G0031560)	Zbtb33 (MGP_PahariEiJ_G0031559)	MGP_PahariEiJ_G0031558	Rhox12 (MGP_PahariEiJ_G0031557)	Rhox11 (MGP_PahariEiJ_G0031556)	Rhox10 (MGP_PahariEiJ_G0031555)	MGP_PahariEiJ_G0031554 #22	MGP_PahariEiJ_G0031553 #22	MGP_PahariEiJ_G0031552	MGP_PahariEiJ_G0031551	MGP_PahariEiJ_G0031550	MGP_PahariEiJ_G0031549	MGP_PahariEiJ_G0031548	Rnf113a1 (MGP_PahariEiJ_G0031547)	Ndufa1 (MGP_PahariEiJ_G0031546)	MGP_PahariEiJ_G0031545	Nkap (MGP_PahariEiJ_G0031544)	Upf3b (MGP_PahariEiJ_G0031543)	Rpl39 (MGP_PahariEiJ_G0031542)	Sowahd (MGP_PahariEiJ_G0031541)	MGP_PahariEiJ_G0031540	Nkrf (MGP_PahariEiJ_G0031539)
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00940000163385	ENSGT00920000149445	ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT01050000245028.A.a.b	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.b.s	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000154400.b.d.a.a	ENSGT00940000160686
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00940000163385	ENSGT00920000149445	ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT01050000245028.A.a.b	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.b.s	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000154400.b.d.a.a	ENSGT00940000160686
Mus_C	ANCESTRAL SPECIES	27	ENSGT00940000158743	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360	ENSGT00940000155145.e	ENSGT00550000074964.i.a	ENSGT00940000155339	ENSGT00950000182899.B.b	ENSGT01030000234579.B.a	ENSGT00940000160471	ENSGT00940000157481	ENSGT00940000163385	ENSGT00920000149445	ENSGT00940000166354	ENSGT00940000154287.a.h	ENSGT00950000182952.C.xc.b #22	ENSGT00700000106005	ENSGT01050000245028.A.a.b	ENSGT00520000058743	ENSGT00390000016292.g.a.a	ENSGT00390000007560	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.b.s	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000160686
Steppe mouse	MODERN SPECIES	1512																ENSMSIG00000021326 #22
spretus	MODERN SPECIES	19	Xiap (MGP_SPRETEiJ_G0034182)	Thoc2 (MGP_SPRETEiJ_G0034181)	Gria3 (MGP_SPRETEiJ_G0034180)	6030498E09Rik (MGP_SPRETEiJ_G0034179)	C1galt1c1 (MGP_SPRETEiJ_G0034178)	Mcts1 (MGP_SPRETEiJ_G0034177)	Cul4b (MGP_SPRETEiJ_G0034176)	Lamp2 (MGP_SPRETEiJ_G0034175)	Atp1b4 (MGP_SPRETEiJ_G0034174)	Tmem255a (MGP_SPRETEiJ_G0034173)	Zbtb33 (MGP_SPRETEiJ_G0034172)	Rhox13 (MGP_SPRETEiJ_G0034171)	Rhox12 (MGP_SPRETEiJ_G0034170)	Rhox11 (MGP_SPRETEiJ_G0034169)	MGP_SPRETEiJ_G0034168	MGP_SPRETEiJ_G0034166 #22	MGP_SPRETEiJ_G0034165	MGP_SPRETEiJ_G0034164	MGP_SPRETEiJ_G0034163	MGP_SPRETEiJ_G0034162	MGP_SPRETEiJ_G0034161	MGP_SPRETEiJ_G0034160	MGP_SPRETEiJ_G0034159	Rhox1 (MGP_SPRETEiJ_G0034158)	Gm9 (MGP_SPRETEiJ_G0034157)	Rnf113a1 (MGP_SPRETEiJ_G0034156)	Ndufa1 (MGP_SPRETEiJ_G0034155)	Akap14 (MGP_SPRETEiJ_G0034154)	Nkap (MGP_SPRETEiJ_G0034153)	Upf3b (MGP_SPRETEiJ_G0034152)	Rpl39 (MGP_SPRETEiJ_G0034151)
Ryukyu mouse	MODERN SPECIES	19	Thoc2 (MGP_CAROLIEiJ_G0033023)	Gria3 (MGP_CAROLIEiJ_G0033022)	6030498E09Rik (MGP_CAROLIEiJ_G0033021)	C1galt1c1 (MGP_CAROLIEiJ_G0033020)	Mcts1 (MGP_CAROLIEiJ_G0033019)	Cul4b (MGP_CAROLIEiJ_G0033018)	Lamp2 (MGP_CAROLIEiJ_G0033017)	MGP_CAROLIEiJ_G0033016	MGP_CAROLIEiJ_G0033015	Tmem255a (MGP_CAROLIEiJ_G0033014)	Zbtb33 (MGP_CAROLIEiJ_G0033013)	Rhox13 (MGP_CAROLIEiJ_G0033012)	Rhox12 (MGP_CAROLIEiJ_G0033011)	Rhox11 (MGP_CAROLIEiJ_G0033010)	Rhox10 (MGP_CAROLIEiJ_G0033009)	MGP_CAROLIEiJ_G0033007 #22	Rhox6 (MGP_CAROLIEiJ_G0033005)	MGP_CAROLIEiJ_G0033004	MGP_CAROLIEiJ_G0033003	Gm9 (MGP_CAROLIEiJ_G0033002)	MGP_CAROLIEiJ_G0033001	Nkap (MGP_CAROLIEiJ_G0033000)	Upf3b (MGP_CAROLIEiJ_G0032999)	MGP_CAROLIEiJ_G0032998	Sowahd (MGP_CAROLIEiJ_G0032997)	Septin6 (MGP_CAROLIEiJ_G0032996)	Nkrf (MGP_CAROLIEiJ_G0032995)	MGP_CAROLIEiJ_G0032994	Steep1 (MGP_CAROLIEiJ_G0032993)	Slc25a5 (MGP_CAROLIEiJ_G0032992)	Slc25a43 (MGP_CAROLIEiJ_G0032991)
Rat	DUPLICATION
Rat	MODERN SPECIES	46	AABR07038676.1 (ENSRNOG00000028202)	RGD1560124 (ENSRNOG00000063278)	LOC691215 (ENSRNOG00000028189)	C1galt1c1 (ENSRNOG00000069353)	Mcts1 (ENSRNOG00000002563)	Cul4b (ENSRNOG00000002585)	LOC100360128 (ENSRNOG00000068620)	Lamp2 (ENSRNOG00000000164)	Atp1b4 (ENSRNOG00000007059)	Tmem255a (ENSRNOG00000028085)	Zbtb33 (ENSRNOG00000028899)	Rhox13 (ENSRNOG00000028050)	Rhox12 (ENSRNOG00000040033)	Rhox11 (ENSRNOG00000028044)	Rhox10 (ENSRNOG00000040026)	Btg1b (ENSRNOG00000047100) #22	RGD1566035 (ENSRNOG00000030645)	Btg1c (ENSRNOG00000032390) #22	ENSRNOG00000065266	LOC691272 (ENSRNOG00000043229)	ENSRNOG00000070384	Rhox9 (ENSRNOG00000050457)	Rhox7 (ENSRNOG00000063283)	Rhox8 (ENSRNOG00000031534)	ENSRNOG00000070486	LOC100364002 (ENSRNOG00000052383)	Rhox5 (ENSRNOG00000046548)	Rhoxf2b (ENSRNOG00000040013)	Rhox3 (ENSRNOG00000053351)	Rhox4g (ENSRNOG00000058333)	RGD1560927 (ENSRNOG00000040008)
Rat	MODERN SPECIES	46	LOC691215 (ENSRNOG00000028189)	C1galt1c1 (ENSRNOG00000069353)	Mcts1 (ENSRNOG00000002563)	Cul4b (ENSRNOG00000002585)	LOC100360128 (ENSRNOG00000068620)	Lamp2 (ENSRNOG00000000164)	Atp1b4 (ENSRNOG00000007059)	Tmem255a (ENSRNOG00000028085)	Zbtb33 (ENSRNOG00000028899)	Rhox13 (ENSRNOG00000028050)	Rhox12 (ENSRNOG00000040033)	Rhox11 (ENSRNOG00000028044)	Rhox10 (ENSRNOG00000040026)	Btg1b (ENSRNOG00000047100) #22	RGD1566035 (ENSRNOG00000030645)	Btg1c (ENSRNOG00000032390) #22	ENSRNOG00000065266	LOC691272 (ENSRNOG00000043229)	ENSRNOG00000070384	Rhox9 (ENSRNOG00000050457)	Rhox7 (ENSRNOG00000063283)	Rhox8 (ENSRNOG00000031534)	ENSRNOG00000070486	LOC100364002 (ENSRNOG00000052383)	Rhox5 (ENSRNOG00000046548)	Rhoxf2b (ENSRNOG00000040013)	Rhox3 (ENSRNOG00000053351)	Rhox4g (ENSRNOG00000058333)	RGD1560927 (ENSRNOG00000040008)	Rnf113a1 (ENSRNOG00000066548)	Ndufa1 (ENSRNOG00000071176)
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Murinae	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Mus	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Mus_A	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00950000182952.C.yc #22
Steppe mouse	MODERN SPECIES	1289																ENSMSIG00000008736 #22
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	408	Nsdhl (ENSDORG00000000136)	Cetn2 (ENSDORG00000000131)	Gabrq (ENSDORG00000001417)	Gabra3 (ENSDORG00000003322)	ENSDORG00000005056	Cnga2 (ENSDORG00000002366)	Fate1 (ENSDORG00000002365)	Prrg3 (ENSDORG00000002364)	Vma21 (ENSDORG00000026433)	Gpr50 (ENSDORG00000000063)	Hmgb3 (ENSDORG00000010826)	Cd99l2 (ENSDORG00000010822)	Mtmr1 (ENSDORG00000010821)	Mtm1 (ENSDORG00000010820)	Mamld1 (ENSDORG00000027915)	ENSDORG00000010633 #22	Tmem185a (ENSDORG00000015027)	Ids (ENSDORG00000026027)	Aff2 (ENSDORG00000015215)	Fmr1 (ENSDORG00000012501)	Slitrk2 (ENSDORG00000000545)	ENSDORG00000005920	Slitrk4 (ENSDORG00000001489)	ENSDORG00000026987	Ldoc1 (ENSDORG00000011028)	Sox3 (ENSDORG00000027035)	ENSDORG00000027706	ENSDORG00000027206	ENSDORG00000026314	Atp11c (ENSDORG00000003661)	Mcf2 (ENSDORG00000006306)
Kangaroo rat	MODERN SPECIES	322	Vezt (ENSDORG00000006065)	Fgd6 (ENSDORG00000006064)	Nr2c1 (ENSDORG00000004257)	Ndufa12 (ENSDORG00000001500)	Tmcc3 (ENSDORG00000008687)	Cep83 (ENSDORG00000012104) #7	ENSDORG00000025370 ##8	ENSDORG00000025182	Cradd (ENSDORG00000011678) #10	Socs2 (ENSDORG00000026257) #11	Mrpl42 (ENSDORG00000015571) #12	Ube2n (ENSDORG00000000650) ##13	Nudt4 (ENSDORG00000025760) #14	ENSDORG00000024294	Eea1 (ENSDORG00000008811) #16	ENSDORG00000013710 #22	Dcn (ENSDORG00000009079) #24	Lum (ENSDORG00000005986) #25	Kera (ENSDORG00000005985) #26	Epyc (ENSDORG00000005984) #27	Ccer1 (ENSDORG00000028218)	Atp2b1 (ENSDORG00000000718) #29	Poc1b (ENSDORG00000013903) #30	Dusp6 (ENSDORG00000025322) #31	Kitl (ENSDORG00000011078) #32	Tmtc3 (ENSDORG00000016561) #34	ENSDORG00000027173	Cep290 (ENSDORG00000015894) #35	4930430F08Rik (ENSDORG00000015893) #36	1700017N19Rik (ENSDORG00000015892)	Mgat4c (ENSDORG00000025545)
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983.e.a #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b.f ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983.e.a #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b.f ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Guinea pig	MODERN SPECIES	9	VEZT (ENSCPOG00000009336)	FGD6 (ENSCPOG00000012303)	NR2C1 (ENSCPOG00000007507)	NDUFA12 (ENSCPOG00000010154)	ENSCPOG00000019272	TMCC3 (ENSCPOG00000034352)	CEP83 (ENSCPOG00000008997) #7	PLXNC1 (ENSCPOG00000008984) #8	CRADD (ENSCPOG00000039871) #10	SOCS2 (ENSCPOG00000008235) #11	ENSCPOG00000030015 #12	ENSCPOG00000008581 ##13	ENSCPOG00000008578 #14	EEA1 (ENSCPOG00000014506) #16	PLEKHG7 (ENSCPOG00000014503) #18	BTG1 (ENSCPOG00000040699) #22	DCN (ENSCPOG00000034660) #24	LUM (ENSCPOG00000036998) #25	KERA (ENSCPOG00000000675) #26	EPYC (ENSCPOG00000006137) #27	CCER1 (ENSCPOG00000023502)	ENSCPOG00000040691	ATP2B1 (ENSCPOG00000015527) #29	POC1B (ENSCPOG00000015525) #30	DUSP6 (ENSCPOG00000030214) #31	KITLG (ENSCPOG00000031249) #32	TMTC3 (ENSCPOG00000012492) #34	CEP290 (ENSCPOG00000033255) #35	C12orf29 (ENSCPOG00000039127) #36	C12orf50 (ENSCPOG00000012468)	MGAT4C (ENSCPOG00000013992)
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983.e.a #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b.f ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Long-tailed chinchilla	MODERN SPECIES	112	VEZT (ENSCLAG00000011358)	FGD6 (ENSCLAG00000010121)	NR2C1 (ENSCLAG00000007935)	NDUFA12 (ENSCLAG00000004709)	TMCC3 (ENSCLAG00000007987)	CEP83 (ENSCLAG00000007562) #7	PLXNC1 (ENSCLAG00000015691) #8	CRADD (ENSCLAG00000015937) #10	SOCS2 (ENSCLAG00000007099) #11	MRPL42 (ENSCLAG00000005421) #12	UBE2N (ENSCLAG00000005227) ##13	ENSCLAG00000012848 #14	ENSCLAG00000011699	EEA1 (ENSCLAG00000006113) #16	ENSCLAG00000005133 #18	BTG1 (ENSCLAG00000004687) #22	DCN (ENSCLAG00000011478) #24	LUM (ENSCLAG00000009704) #25	KERA (ENSCLAG00000008374) #26	EPYC (ENSCLAG00000008177) #27	CCER1 (ENSCLAG00000014412)	ATP2B1 (ENSCLAG00000009579) #29	POC1B (ENSCLAG00000006831) #30	DUSP6 (ENSCLAG00000005856) #31	KITLG (ENSCLAG00000006139) #32	TMTC3 (ENSCLAG00000005406) #34	CEP290 (ENSCLAG00000006047) #35	C12orf29 (ENSCLAG00000004653) #36	C12orf50 (ENSCLAG00000006991)	MGAT4C (ENSCLAG00000008726)	NTS (ENSCLAG00000007844)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000045053	CEP83 (ENSHGLG00000005240) #7	ENSHGLG00000014443	ENSHGLG00000042288	PLXNC1 (ENSHGLG00000005788) #8	CRADD (ENSHGLG00000040480) #10	ENSHGLG00000006324 #11	ENSHGLG00000042799	MRPL42 (ENSHGLG00000007399) #12	ENSHGLG00000008071 ##13	ENSHGLG00000045354 #14	ENSHGLG00000001665	EEA1 (ENSHGLG00000004855) #16	PLEKHG7 (ENSHGLG00000037576) #18	ENSHGLG00000042071	ENSHGLG00000007207 #22	DCN (ENSHGLG00000008166) #24	LUM (ENSHGLG00000009566) #25	KERA (ENSHGLG00000010458) #26	ENSHGLG00000004737 #27	ENSHGLG00000046116	ENSHGLG00000004778	ENSHGLG00000042775	ENSHGLG00000005908	ENSHGLG00000007341 #29	ENSHGLG00000040482	ENSHGLG00000014556 #30	GALNT4 (ENSHGLG00000040214)	ENSHGLG00000047274	ENSHGLG00000045262	ENSHGLG00000042430
Naked mole-rat female	MODERN SPECIES	30	PGGHG (ENSHGLG00000015446)	ENSHGLG00000017176	PSMD13 (ENSHGLG00000017609)	SIRT3 (ENSHGLG00000017649)	RIC8A (ENSHGLG00000018718)	BET1L (ENSHGLG00000049253)	ODF3 (ENSHGLG00000017967)	ENSHGLG00000017977	ENSHGLG00000008863	ENSHGLG00000000614	ENSHGLG00000042162	ENSHGLG00000000399	ENSHGLG00000009321	ENSHGLG00000009379	ENSHGLG00000048422	ENSHGLG00000004775 #22	ENSHGLG00000036302	ENSHGLG00000036746	ENSHGLG00000013205	VGLL2 (ENSHGLG00000048393)	RFX6 (ENSHGLG00000019573)	GPRC6A (ENSHGLG00000036750)	ENSHGLG00000008946	KPNA5 (ENSHGLG00000007645)	ENSHGLG00000009896	ENSHGLG00000002525	ENSHGLG00000049438	ENSHGLG00000035661	ENSHGLG00000050402	ENSHGLG00000005874	ENSHGLG00000016052
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.e #12	ENSGT00540000070023.d ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Eurasian red squirrel	MODERN SPECIES	14	TMCC3 (ENSSVLG00005004280)	CEP83 (ENSSVLG00005004243) #7	PLXNC1 (ENSSVLG00005004224) #8	CRADD (ENSSVLG00005004194) #10	SOCS2 (ENSSVLG00005004170) #11	ENSSVLG00005004158	ENSSVLG00005004136 #12	ENSSVLG00005004122	UBE2N (ENSSVLG00005004108) ##13	ENSSVLG00005004086 #14	ENSSVLG00005004071	ENSSVLG00005004057	EEA1 (ENSSVLG00005004013) #16	ENSSVLG00005003978 #18	ENSSVLG00005003961 #19	BTG1 (ENSSVLG00005003939) #22	DCN (ENSSVLG00005003889) #24	LUM (ENSSVLG00005003829) #25	KERA (ENSSVLG00005003814) #26	EPYC (ENSSVLG00005003799) #27	CCER1 (ENSSVLG00005003787)	ENSSVLG00005003775	ATP2B1 (ENSSVLG00005003665) #29	POC1B (ENSSVLG00005003557) #30	DUSP6 (ENSSVLG00005003537) #31	ENSSVLG00005003526	KITLG (ENSSVLG00005003404) #32	TMTC3 (ENSSVLG00005003348) #34	CEP290 (ENSSVLG00005003075) #35	ENSSVLG00005002975 #36	C12orf50 (ENSSVLG00005002902)
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.e.a #12	ENSGT00540000070023.d ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00390000009130.a.a.b.h	ENSGT00940000155352
Alpin marmot	MODERN SPECIES	11	FGD6 (ENSMMMG00000020186)	NR2C1 (ENSMMMG00000020203)	NDUFA12 (ENSMMMG00000020249)	TMCC3 (ENSMMMG00000020256)	ENSMMMG00000020271	CEP83 (ENSMMMG00000020275) #7	PLXNC1 (ENSMMMG00000020295) #8	CRADD (ENSMMMG00000020454) #10	SOCS2 (ENSMMMG00000020455) #11	ENSMMMG00000020461 #12	ENSMMMG00000020474 #13	ENSMMMG00000020505 #14	EEA1 (ENSMMMG00000020523) #16	ENSMMMG00000020545 #18	ENSMMMG00000020551 #19	BTG1 (ENSMMMG00000020559) #22	DCN (ENSMMMG00000020572) #24	LUM (ENSMMMG00000020574) #25	KERA (ENSMMMG00000020583) #26	EPYC (ENSMMMG00000020588) #27	CCER1 (ENSMMMG00000020597)	ATP2B1 (ENSMMMG00000020615) #29	POC1B (ENSMMMG00000020630) #30	DUSP6 (ENSMMMG00000020660) #31	KITLG (ENSMMMG00000000026) #32	ENSMMMG00000000046	TMTC3 (ENSMMMG00000000074) #34	CEP290 (ENSMMMG00000000165) #35	C12orf29 (ENSMMMG00000000596) #36	C12orf50 (ENSMMMG00000000632)	ENSMMMG00000000830
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.e.a #12	ENSGT00540000070023.d ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00390000009130.a.a.b.h	ENSGT00940000155352
Arctic ground squirrel	MODERN SPECIES	6	VEZT (ENSUPAG00010006572)	FGD6 (ENSUPAG00010006610)	NR2C1 (ENSUPAG00010006765)	NDUFA12 (ENSUPAG00010006899)	TMCC3 (ENSUPAG00010006912)	CEP83 (ENSUPAG00010006959) #7	PLXNC1 (ENSUPAG00010006977) #8	CRADD (ENSUPAG00010007012) #10	SOCS2 (ENSUPAG00010007030) #11	ENSUPAG00010007046 #12	ENSUPAG00010007081 ##13	ENSUPAG00010007093 #14	EEA1 (ENSUPAG00010007100) #16	ENSUPAG00010007127 #18	ENSUPAG00010007147 #19	BTG1 (ENSUPAG00010007152) #22	DCN (ENSUPAG00010007176) #24	LUM (ENSUPAG00010007216) #25	KERA (ENSUPAG00010007225) #26	EPYC (ENSUPAG00010007237) #27	CCER1 (ENSUPAG00010007261)	ATP2B1 (ENSUPAG00010007267) #29	POC1B (ENSUPAG00010007342) #30	DUSP6 (ENSUPAG00010007403) #31	KITLG (ENSUPAG00010007417) #32	TMTC3 (ENSUPAG00010007444) #34	CEP290 (ENSUPAG00010007458) #35	C12orf29 (ENSUPAG00010007666) #36	C12orf50 (ENSUPAG00010007681)	ENSUPAG00010007903
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	591																ENSSTOG00000019635 #22
Squirrel	MODERN SPECIES	107	USP44 (ENSSTOG00000023944)	METAP2 (ENSSTOG00000006960)	VEZT (ENSSTOG00000016388)	FGD6 (ENSSTOG00000016385)	NR2C1 (ENSSTOG00000027488)	TMCC3 (ENSSTOG00000015074)	CEP83 (ENSSTOG00000000737) #7	PLXNC1 (ENSSTOG00000000728) #8	ENSSTOG00000021839	CRADD (ENSSTOG00000012496) #10	SOCS2 (ENSSTOG00000012493) #11	MRPL42 (ENSSTOG00000026544) #12	ENSSTOG00000002166 ##13	ENSSTOG00000020306 #14	EEA1 (ENSSTOG00000001792) #16	ENSSTOG00000010616 #22	DCN (ENSSTOG00000008917) #24	LUM (ENSSTOG00000008915) #25	KERA (ENSSTOG00000011961) #26	EPYC (ENSSTOG00000023957) #27	CCER1 (ENSSTOG00000031809)	ATP2B1 (ENSSTOG00000016072) #29	POC1B (ENSSTOG00000006306) #30	DUSP6 (ENSSTOG00000006279) #31	KITLG (ENSSTOG00000031402) #32	ENSSTOG00000031881	TMTC3 (ENSSTOG00000004530) #34	CEP290 (ENSSTOG00000004444) #35	C12orf29 (ENSSTOG00000021949) #36	C12orf50 (ENSSTOG00000004396)	ENSSTOG00000032276
Lagomorpha	ANCESTRAL SPECIES	22	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000154527.a.a.b	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Rabbit	MODERN SPECIES	15	VEZT (ENSOCUG00000008792)	ENSOCUG00000022191	FGD6 (ENSOCUG00000004665)	NR2C1 (ENSOCUG00000004657)	NDUFA12 (ENSOCUG00000033569)	TMCC3 (ENSOCUG00000008619)	CEP83 (ENSOCUG00000016919) #7	ENSOCUG00000016904 #8	ENSOCUG00000039373	SOCS2 (ENSOCUG00000010937) #11	ENSOCUG00000010928 #12	UBE2N (ENSOCUG00000011287) ##13	ENSOCUG00000011283 #14	EEA1 (ENSOCUG00000009295) #16	PLEKHG7 (ENSOCUG00000009290) #18	BTG1 (ENSOCUG00000008223) #22	DCN (ENSOCUG00000006969) #24	LUM (ENSOCUG00000005592) #25	KERA (ENSOCUG00000013394) #26	EPYC (ENSOCUG00000013389) #27	CCER1 (ENSOCUG00000013386)	ENSOCUG00000030126	ATP2B1 (ENSOCUG00000016507) #29	ENSOCUG00000012940	POC1B (ENSOCUG00000008219) #30	DUSP6 (ENSOCUG00000002902) #31	KITLG (ENSOCUG00000017687) #32	TMTC3 (ENSOCUG00000004320) #34	CEP290 (ENSOCUG00000004290) #35	C12orf29 (ENSOCUG00000004284) #36	C12orf50 (ENSOCUG00000004280)
Pika	MODERN SPECIES	8434																BTG1 (ENSOPRG00000005730) #22
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00540000073882	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182952.C #22
Common shrew	MODERN SPECIES	2253																BTG1 (ENSSARG00000004768) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00540000073882	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00540000073882	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00950000185173	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Felidae	ANCESTRAL SPECIES	2	ENSGT00940000158165	ENSGT00390000005848.n	ENSGT00940000157275	ENSGT00950000185173	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00950000183087.A.b.a.b.b.a.a	ENSGT00390000010491.lb.b.a #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Panthera	ANCESTRAL SPECIES		ENSGT00940000158165	ENSGT00390000005848.n	ENSGT00940000157275	ENSGT00950000185173	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00950000183087.A.b.a.b.b.a.a	ENSGT00390000010491.lb.b.a.b #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00940000158165	ENSGT00390000005848.n	ENSGT00940000157275	ENSGT00950000185173	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00900000143786 #9	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00950000183087.A.b.a.b.b.a.a	ENSGT00390000010491.lb.b.a.b #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
lion	MODERN SPECIES	7	METAP2 (ENSPLOG00000011232)	VEZT (ENSPLOG00000011105)	FGD6 (ENSPLOG00000010832)	NR2C1 (ENSPLOG00000010742)	NDUFA12 (ENSPLOG00000005399)	TMCC3 (ENSPLOG00000005312)	CEP83 (ENSPLOG00000005293) #7	PLXNC1 (ENSPLOG00000005206) #8	CRADD (ENSPLOG00000005166) #10	SOCS2 (ENSPLOG00000005147) #11	ENSPLOG00000005119	ENSPLOG00000005096 #12	UBE2N (ENSPLOG00000005059) ##13	ENSPLOG00000005018 #14	EEA1 (ENSPLOG00000004979) #16	BTG1 (ENSPLOG00000004929) #22	DCN (ENSPLOG00000004902) #24	LUM (ENSPLOG00000004883) #25	KERA (ENSPLOG00000004874) #26	EPYC (ENSPLOG00000004861) #27	CCER1 (ENSPLOG00000004853)	ATP2B1 (ENSPLOG00000004810) #29	POC1B (ENSPLOG00000004776) #30	DUSP6 (ENSPLOG00000004748) #31	KITLG (ENSPLOG00000004722) #32	TMTC3 (ENSPLOG00000004704) #34	CEP290 (ENSPLOG00000004652) #35	C12orf29 (ENSPLOG00000004634) #36	C12orf50 (ENSPLOG00000004616)	ENSPLOG00000004594	MGAT4C (ENSPLOG00000004588)
leopard	MODERN SPECIES	13	NR2C1 (ENSPPRG00000000725)	ENSPPRG00000001562	TMCC3 (ENSPPRG00000002306)	ENSPPRG00000002956	CEP83 (ENSPPRG00000005368) #7	PLXNC1 (ENSPPRG00000008196) #8	ENSPPRG00000009352 #9	CRADD (ENSPPRG00000009591) #10	SOCS2 (ENSPPRG00000010190) #11	ENSPPRG00000012745	ENSPPRG00000013218 #12	ENSPPRG00000015222 ##13	ENSPPRG00000016358 #14	EEA1 (ENSPPRG00000017365) #16	ENSPPRG00000021645 #18	BTG1 (ENSPPRG00000023181) #22	DCN (ENSPPRG00000001125) #24	LUM (ENSPPRG00000001526) #25	KERA (ENSPPRG00000001587) #26	EPYC (ENSPPRG00000001902) #27	CCER1 (ENSPPRG00000018868)	ATP2B1 (ENSPPRG00000005222) #29	POC1B (ENSPPRG00000006168) #30	DUSP6 (ENSPPRG00000006553) #31	KITLG (ENSPPRG00000007405) #32	TMTC3 (ENSPPRG00000008299) #34	CEP290 (ENSPPRG00000018162) #35	C12orf29 (ENSPPRG00000020648) #36	C12orf50 (ENSPPRG00000022434)
Tiger	MODERN SPECIES	229	VEZT (ENSPTIG00000019201)	FGD6 (ENSPTIG00000017264)	NR2C1 (ENSPTIG00000014243)	ENSPTIG00000013446	TMCC3 (ENSPTIG00000012501)	CEP83 (ENSPTIG00000008825) #7	ENSPTIG00000005416 #8	CRADD (ENSPTIG00000000280) #10	SOCS2 (ENSPTIG00000020683) #11	ENSPTIG00000020342	ENSPTIG00000019099 #12	ENSPTIG00000018236 ##13	ENSPTIG00000016745 #14	EEA1 (ENSPTIG00000013727) #16	ENSPTIG00000012108 #18	BTG1 (ENSPTIG00000003723) #22	DCN (ENSPTIG00000010183) #24	LUM (ENSPTIG00000009273) #25	KERA (ENSPTIG00000009124) #26	EPYC (ENSPTIG00000008648) #27	ATP2B1 (ENSPTIG00000005250) #29	POC1B (ENSPTIG00000019536) #30	DUSP6 (ENSPTIG00000017946) #31	ENSPTIG00000014354	TMTC3 (ENSPTIG00000013419) #34	CEP290 (ENSPTIG00000022025) #35	C12orf29 (ENSPTIG00000021960) #36	C12orf50 (ENSPTIG00000021703)	MGAT4C (ENSPTIG00000021224)	NTS (ENSPTIG00000020009)	RASSF9 (ENSPTIG00000019594)
Cat	MODERN SPECIES	238	ENSFCAG00000045925	VEZT (ENSFCAG00000008353)	FGD6 (ENSFCAG00000008351)	NR2C1 (ENSFCAG00000026108)	ENSFCAG00000023050	TMCC3 (ENSFCAG00000009894)	CEP83 (ENSFCAG00000027845) #7	PLXNC1 (ENSFCAG00000036479) #8	ENSFCAG00000051463 #9	SOCS2 (ENSFCAG00000029868) #11	ENSFCAG00000022343	ENSFCAG00000037907 #12	UBE2N (ENSFCAG00000004260) ##13	ENSFCAG00000025933 #14	EEA1 (ENSFCAG00000022916) #16	BTG1 (ENSFCAG00000043871) #22	DCN (ENSFCAG00000022438) #24	LUM (ENSFCAG00000003764) #25	KERA (ENSFCAG00000041006) #26	EPYC (ENSFCAG00000027187) #27	CCER1 (ENSFCAG00000026894)	ATP2B1 (ENSFCAG00000007626) #29	POC1B (ENSFCAG00000007623) #30	DUSP6 (ENSFCAG00000029747) #31	KITLG (ENSFCAG00000028734) #32	ENSFCAG00000050203	TMTC3 (ENSFCAG00000025680) #34	CEP290 (ENSFCAG00000028019) #35	CB4H12orf29 (ENSFCAG00000000699) #36	CB4H12orf50 (ENSFCAG00000022045)	ENSFCAG00000051429
Caniformia	ANCESTRAL SPECIES	20	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00950000185173	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00950000185930	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Canidae	ANCESTRAL SPECIES	12	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00950000185930	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155052.e.b.b.c.a	ENSGT00940000155352
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00950000185930	ENSGT00390000014448 #10	ENSGT00940000157983.c #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000164524	ENSGT00940000155052.e.a
Dog	MODERN SPECIES	6	METAP2 (ENSCAFG00845023414)	VEZT (ENSCAFG00845023106)	FGD6 (ENSCAFG00845022871)	NR2C1 (ENSCAFG00845022744)	NDUFA12 (ENSCAFG00845022634)	TMCC3 (ENSCAFG00845022396)	CEP83 (ENSCAFG00845022275) #7	PLXNC1 (ENSCAFG00845021595) #8	ENSCAFG00845021424	CRADD (ENSCAFG00845021328) #10	ENSCAFG00845021192 #11	MRPL42 (ENSCAFG00845021094) #12	UBE2N (ENSCAFG00845021013) ##13	NUDT4 (ENSCAFG00845020960) #14	EEA1 (ENSCAFG00845020208) #16	BTG1 (ENSCAFG00845020084) #22	ENSCAFG00845020040	DCN (ENSCAFG00845019761) #24	LUM (ENSCAFG00845019701) #25	KERA (ENSCAFG00845019646) #26	EPYC (ENSCAFG00845019572) #27	CCER1 (ENSCAFG00845019552)	ATP2B1 (ENSCAFG00845019043) #29	POC1B (ENSCAFG00845018770) #30	DUSP6 (ENSCAFG00845018644) #31	KITLG (ENSCAFG00845018506) #32	TMTC3 (ENSCAFG00845018327) #34	CEP290 (ENSCAFG00845017266) #35	C15H12orf29 (ENSCAFG00845016711) #36	C15H12orf50 (ENSCAFG00845016524)	ENSCAFG00845016472
Dingo	MODERN SPECIES	277	ENSCAFG00020023187	FGD6 (ENSCAFG00020023183)	NR2C1 (ENSCAFG00020023077)	NDUFA12 (ENSCAFG00020023057)	TMCC3 (ENSCAFG00020023056)	CEP83 (ENSCAFG00020023051) #7	PLXNC1 (ENSCAFG00020023009) #8	ENSCAFG00020022981	ENSCAFG00020022976 #10	SOCS2 (ENSCAFG00020022971) #11	MRPL42 (ENSCAFG00020022967) #12	ENSCAFG00020022966 ##13	ENSCAFG00020022964 #14	ENSCAFG00020022963	EEA1 (ENSCAFG00020022666) #16	BTG1 (ENSCAFG00020022634) #22	DCN (ENSCAFG00020022624) #24	LUM (ENSCAFG00020022621) #25	KERA (ENSCAFG00020022620) #26	EPYC (ENSCAFG00020022615) #27	CCER1 (ENSCAFG00020022614)	ATP2B1 (ENSCAFG00020016571) #29	POC1B (ENSCAFG00020016403) #30	DUSP6 (ENSCAFG00020016400) #31	ENSCAFG00020016396 #32	ENSCAFG00020016394 #32	TMTC3 (ENSCAFG00020016371) #34	CEP290 (ENSCAFG00020016258) #35	C12orf29 (ENSCAFG00020016248) #36	C12orf50 (ENSCAFG00020016242)	ENSCAFG00020016235
Red fox	MODERN SPECIES	9					TMCC3 (ENSVVUG00000012324)	CEP83 (ENSVVUG00000012315) #7	PLXNC1 (ENSVVUG00000011903) #8	ENSVVUG00000011872	CRADD (ENSVVUG00000011866) #10	ENSVVUG00000011846 #11	MRPL42 (ENSVVUG00000011842) #12	ENSVVUG00000011840 ##13	NUDT4 (ENSVVUG00000011834) #14	EEA1 (ENSVVUG00000011772) #16	ENSVVUG00000011745	BTG1 (ENSVVUG00000011741) #22	DCN (ENSVVUG00000011722) #24	LUM (ENSVVUG00000011715) #25	KERA (ENSVVUG00000011712) #26	EPYC (ENSVVUG00000011701) #27	CCER1 (ENSVVUG00000011693)	ATP2B1 (ENSVVUG00000011650) #29	ENSVVUG00000011636 #30	ENSVVUG00000011627 #30	DUSP6 (ENSVVUG00000011620) #31	KITLG (ENSVVUG00000011565) #32	TMTC3 (ENSVVUG00000011546) #34	CEP290 (ENSVVUG00000011505) #35	C12orf29 (ENSVVUG00000011487) #36	C12orf50 (ENSVVUG00000011456)	ENSVVUG00000011423
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00950000185173	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00950000185930	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C #22	ENSGT00940000158382.d #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00950000185930	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.d.m.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C #22	ENSGT00940000158382.d #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Ferret	MODERN SPECIES	185	VEZT (ENSMPUG00000007304)	FGD6 (ENSMPUG00000007314)	NR2C1 (ENSMPUG00000007335)	NDUFA12 (ENSMPUG00000007354)	TMCC3 (ENSMPUG00000007383)	CEP83 (ENSMPUG00000007387) #7	ENSMPUG00000007401 #8	ENSMPUG00000007413 #8	ENSMPUG00000007427	CRADD (ENSMPUG00000007433) #10	ENSMPUG00000018718	SOCS2 (ENSMPUG00000007443) #11	ENSMPUG00000007452 ##13	ENSMPUG00000007490 #14	EEA1 (ENSMPUG00000007498) #16	BTG1 (ENSMPUG00000007519) #22	DCN (ENSMPUG00000007528) #24	LUM (ENSMPUG00000007539) #25	KERA (ENSMPUG00000007541) #26	EPYC (ENSMPUG00000007552) #27	CCER1 (ENSMPUG00000018720)	ATP2B1 (ENSMPUG00000007566) #29	POC1B (ENSMPUG00000007581) #30	ENSMPUG00000007590	DUSP6 (ENSMPUG00000007599) #31	KITLG (ENSMPUG00000007604) #32	TMTC3 (ENSMPUG00000007613) #34	CEP290 (ENSMPUG00000007620) #35	C12orf29 (ENSMPUG00000007654) #36	C12orf50 (ENSMPUG00000007661)	ENSMPUG00000007691
American mink	MODERN SPECIES	22										SOCS2 (ENSNVIG00000023891) #11	ENSNVIG00000023894 #12	ENSNVIG00000023897	ENSNVIG00000023900 ##13	ENSNVIG00000023902 #14	EEA1 (ENSNVIG00000023904) #16	BTG1 (ENSNVIG00000023913) #22	DCN (ENSNVIG00000023917) #24	LUM (ENSNVIG00000023923) #25	KERA (ENSNVIG00000023924) #26	EPYC (ENSNVIG00000023926) #27	CCER1 (ENSNVIG00000023927)	ENSNVIG00000023933	ATP2B1 (ENSNVIG00000000007) #29	POC1B (ENSNVIG00000000231) #30	DUSP6 (ENSNVIG00000000281) #31	ENSNVIG00000000305 #32	TMTC3 (ENSNVIG00000000330) #34	CEP290 (ENSNVIG00000000345) #35	C12orf29 (ENSNVIG00000000481) #36	C12orf50 (ENSNVIG00000000495)	ENSNVIG00000000519
Ursidae	ANCESTRAL SPECIES	13	ENSGT00390000003290	ENSGT00940000173218	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00950000185173	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b.db #14	ENSGT00940000156910 #16	ENSGT00950000182952.C #22	ENSGT00940000158382.d #24	ENSGT00940000158177.b.n #25	ENSGT00940000158968.b #26	ENSGT00940000157574 #27	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Ursus	ANCESTRAL SPECIES	120	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00950000185173	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b.db #14	ENSGT00940000156910 #16	ENSGT00950000182952.C #22	ENSGT00940000158382.d #24	ENSGT00940000158177.b.n #25	ENSGT00940000158968.b #26	ENSGT00940000157574 #27	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Polar bear	MODERN SPECIES	144	VEZT (ENSUMAG00000003464)	FGD6 (ENSUMAG00000003327)	NR2C1 (ENSUMAG00000003306)	NDUFA12 (ENSUMAG00000003277)	ENSUMAG00000003265	TMCC3 (ENSUMAG00000003259)	ENSUMAG00000003254	CEP83 (ENSUMAG00000003241) #7	PLXNC1 (ENSUMAG00000003163) #8	CRADD (ENSUMAG00000003126) #10	SOCS2 (ENSUMAG00000003118) #11	MRPL42 (ENSUMAG00000003107) #12	ENSUMAG00000003099 ##13	ENSUMAG00000003093 #14	EEA1 (ENSUMAG00000002622) #16	BTG1 (ENSUMAG00000002516) #22	DCN (ENSUMAG00000002501) #24	LUM (ENSUMAG00000002496) #25	KERA (ENSUMAG00000002489) #26	EPYC (ENSUMAG00000002470) #27	ATP2B1 (ENSUMAG00000002449) #29	POC1B (ENSUMAG00000002434) #30	DUSP6 (ENSUMAG00000002421) #31	KITLG (ENSUMAG00000002410) #32	TMTC3 (ENSUMAG00000002232) #34	CEP290 (ENSUMAG00000001925) #35	C12orf29 (ENSUMAG00000001897) #36	C12orf50 (ENSUMAG00000001827)	ENSUMAG00000001817	MGAT4C (ENSUMAG00000001797)	NTS (ENSUMAG00000001768)
American black bear	MODERN SPECIES	7575																BTG1 (ENSUAMG00000011500) #22
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	6	METAP2 (ENSAMEG00000002192)	ENSAMEG00000028699	VEZT (ENSAMEG00000002219)	FGD6 (ENSAMEG00000002237)	NR2C1 (ENSAMEG00000002266)	NDUFA12 (ENSAMEG00000026868)	TMCC3 (ENSAMEG00000002299)	CEP83 (ENSAMEG00000009750) #7	PLXNC1 (ENSAMEG00000009772) #8	ENSAMEG00000009818 #11	MRPL42 (ENSAMEG00000009832) #12	UBE2N (ENSAMEG00000009833) ##13	ENSAMEG00000009844 #14	EEA1 (ENSAMEG00000006621) #16	ENSAMEG00000024259 #19	BTG1 (ENSAMEG00000018895) #22	DCN (ENSAMEG00000004377) #24	LUM (ENSAMEG00000014674) #25	KERA (ENSAMEG00000014670) #26	EPYC (ENSAMEG00000014653) #27	ATP2B1 (ENSAMEG00000016182) #29	POC1B (ENSAMEG00000001812) #30	DUSP6 (ENSAMEG00000001852) #31	KITLG (ENSAMEG00000002326) #32	TMTC3 (ENSAMEG00000002347) #34	CEP290 (ENSAMEG00000002356) #35	C12orf29 (ENSAMEG00000002394) #36	C12orf50 (ENSAMEG00000002419)	MGAT4C (ENSAMEG00000006123)	NTS (ENSAMEG00000006112)	RASSF9 (ENSAMEG00000006110)
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	703																ENSAMEG00000029781 #22
Giant Panda	MODERN SPECIES	671																ENSAMEG00000030857 #22
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00540000070023.d.m.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00540000073882	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Chiroptera	ANCESTRAL SPECIES	4							ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Megabat	MODERN SPECIES	7201																BTG1 (ENSPVAG00000005437) #22
Microchiroptera	ANCESTRAL SPECIES	2						ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.a.a #13	ENSGT00540000070023.d.m.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Microbat	MODERN SPECIES	946					ENSMLUG00000000436	ENSMLUG00000016455	SOCS2 (ENSMLUG00000015422) #11	ENSMLUG00000027351	ENSMLUG00000009982 ##13	ENSMLUG00000002767 #14	ENSMLUG00000022858	EEA1 (ENSMLUG00000003482) #16	ENSMLUG00000001417 #18	ENSMLUG00000023018 #19	ENSMLUG00000026108	BTG1 (ENSMLUG00000017492) #22	ENSMLUG00000028663	ENSMLUG00000027841	DCN (ENSMLUG00000000100) #24	LUM (ENSMLUG00000007704) #25	KERA (ENSMLUG00000007698) #26	EPYC (ENSMLUG00000007680) #27	ATP2B1 (ENSMLUG00000017233) #29	ENSMLUG00000009601	POC1B (ENSMLUG00000002893) #30	DUSP6 (ENSMLUG00000002881) #31	ENSMLUG00000029765	KITLG (ENSMLUG00000001777) #32	ENSMLUG00000003683	TMTC3 (ENSMLUG00000014827) #34	CEP290 (ENSMLUG00000011675) #35
Greater horseshoe bat	MODERN SPECIES	1	RAD51AP1 (ENSRFEG00010019230)	DYRK4 (ENSRFEG00010019022)	AKAP3 (ENSRFEG00010018980)	NDUFA9 (ENSRFEG00010018944)	GALNT8 (ENSRFEG00010018902)	TMCC3 (ENSRFEG00010018851)	CEP83 (ENSRFEG00010018746) #7	PLXNC1 (ENSRFEG00010018545) #8	ENSRFEG00010018443 #11	ENSRFEG00010018385 #12	ENSRFEG00010018325 #13	ENSRFEG00010018237 #14	ENSRFEG00010018024	EEA1 (ENSRFEG00010017989) #16	PLEKHG7 (ENSRFEG00010017717) #18	BTG1 (ENSRFEG00010017678) #22	DCN (ENSRFEG00010017493) #24	LUM (ENSRFEG00010017456) #25	KERA (ENSRFEG00010017413) #26	EPYC (ENSRFEG00010017332) #27	CCER1 (ENSRFEG00010017318)	ATP2B1 (ENSRFEG00010017003) #29	POC1B (ENSRFEG00010016669) #30	KITLG (ENSRFEG00010016551) #32	TMTC3 (ENSRFEG00010016505) #34	CEP290 (ENSRFEG00010016392) #35	C12orf29 (ENSRFEG00010016353) #36	C12orf50 (ENSRFEG00010016011)	MGAT4C (ENSRFEG00010015934)	NTS (ENSRFEG00010015856)	RASSF9 (ENSRFEG00010015800)
Equus	ANCESTRAL SPECIES	21	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275.c	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.a.a #13	ENSGT00540000070023.d.m.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00540000073882	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Donkey	MODERN SPECIES	11	ENSEASG00005019402	ENSEASG00005028645	FGD6 (ENSEASG00005019390)	NR2C1 (ENSEASG00005019381)	NDUFA12 (ENSEASG00005019380)	ENSEASG00005006922	ENSEASG00005019376 #7	PLXNC1 (ENSEASG00005019375) #8	SOCS2 (ENSEASG00005019365) #11	MRPL42 (ENSEASG00005019361) #12	ENSEASG00005019358 #13	ENSEASG00005033697 #14	ENSEASG00005019352	EEA1 (ENSEASG00005019347) #16	PLEKHG7 (ENSEASG00005019344) #18	BTG1 (ENSEASG00005038206) #22	DCN (ENSEASG00005019334) #24	LUM (ENSEASG00005019333) #25	KERA (ENSEASG00005019332) #26	EPYC (ENSEASG00005019329) #27	CCER1 (ENSEASG00005019328)	ATP2B1 (ENSEASG00005019323) #29	GALNT4 (ENSEASG00005032213)	POC1B (ENSEASG00005019319) #30	ENSEASG00005029510	DUSP6 (ENSEASG00005019316) #31	ENSEASG00005027464	ENSEASG00005026650 ##13	KITLG (ENSEASG00005019312) #32	TMTC3 (ENSEASG00005019307) #34	CEP290 (ENSEASG00005019245) #35
Horse	MODERN SPECIES	20	VEZT (ENSECAG00000002783)	FGD6 (ENSECAG00000021075)	NR2C1 (ENSECAG00000000645)	NDUFA12 (ENSECAG00000015836)	TMCC3 (ENSECAG00000011697)	CEP83 (ENSECAG00000008428) #7	PLXNC1 (ENSECAG00000022971) #8	SOCS2 (ENSECAG00000006833) #11	ENSECAG00000053683	MRPL42 (ENSECAG00000026888) #12	ENSECAG00000019597 ##13	NUDT4 (ENSECAG00000019319) #14	PLEKHG7 (ENSECAG00000000374) #18	ENSECAG00000056644 #19	EEA1 (ENSECAG00000007262) #16	BTG1 (ENSECAG00000031980) #22	DCN (ENSECAG00000020413) #24	LUM (ENSECAG00000018248) #25	KERA (ENSECAG00000017668) #26	EPYC (ENSECAG00000015607) #27	CCER1 (ENSECAG00000015541)	ENSECAG00000058662	ENSECAG00000045962	ENSECAG00000049161	ATP2B1 (ENSECAG00000008450) #29	POC1B (ENSECAG00000013326)	ENSECAG00000046638	DUSP6 (ENSECAG00000037937) #31	UBE2N (ENSECAG00000009937) #13	KITLG (ENSECAG00000000152) #32	TMTC3 (ENSECAG00000020616) #34
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Camelidae	ANCESTRAL SPECIES	39	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb.s #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00410000029301 #20	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Alpaca	MODERN SPECIES	2657													EEA1 (ENSVPAG00000011188) #16	ENSVPAG00000011187 #18	ENSVPAG00000011186 #20	BTG1 (ENSVPAG00000011185) #22	DCN (ENSVPAG00000011184) #24	LUM (ENSVPAG00000011183) #25	KERA (ENSVPAG00000011182) #26	EPYC (ENSVPAG00000011181) #27	CCER1 (ENSVPAG00000011180)
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	3	ENSCDRG00005020169	FGD6 (ENSCDRG00005020179)	NR2C1 (ENSCDRG00005020214)	ENSCDRG00005020236	TMCC3 (ENSCDRG00005020264)	CEP83 (ENSCDRG00005020280) #7	ENSCDRG00005020305	PLXNC1 (ENSCDRG00005020326) #8	CRADD (ENSCDRG00005020435) #10	SOCS2 (ENSCDRG00005020456) #11	ENSCDRG00005020466 #12	UBE2N (ENSCDRG00005020486) ##13	ENSCDRG00005020498 #14	ENSCDRG00005020504	EEA1 (ENSCDRG00005020578) #16	ENSCDRG00005021459 #22	DCN (ENSCDRG00005021468) #24	LUM (ENSCDRG00005021485) #25	KERA (ENSCDRG00005021487) #26	EPYC (ENSCDRG00005021491) #27	CCER1 (ENSCDRG00005021493)	ATP2B1 (ENSCDRG00005021499) #29	POC1B (ENSCDRG00005021510) #30	DUSP6 (ENSCDRG00005021513) #31	KITLG (ENSCDRG00005021518) #32	TMTC3 (ENSCDRG00005021523) #34	CEP290 (ENSCDRG00005021536) #35	C12orf29 (ENSCDRG00005021555) #36	C12orf50 (ENSCDRG00005021566)	MGAT4C (ENSCDRG00005005093)	NTS (ENSCDRG00005005109)
Arabian camel	MODERN SPECIES	11	PPP3CA (ENSCDRG00005017194)	ENSCDRG00005017624	EMCN (ENSCDRG00005017637)	DDIT4L (ENSCDRG00005017713)	ENSCDRG00005017732	ENSCDRG00005017764	DNAJB14 (ENSCDRG00005017876)	LAMTOR3 (ENSCDRG00005017934)	DAPP1 (ENSCDRG00005017979)	C4orf54 (ENSCDRG00005018047)	MTTP (ENSCDRG00005018066)	TRMT10A (ENSCDRG00005018130)	C4orf17 (ENSCDRG00005018162)	ENSCDRG00005018187	ENSCDRG00005018280	ENSCDRG00005018374 #22	ADH6 (ENSCDRG00005006293)	ADH4 (ENSCDRG00005006348)	ADH5 (ENSCDRG00005006442)	METAP1 (ENSCDRG00005006507)	ENSCDRG00005006550	TSPAN5 (ENSCDRG00005006719)	RAP1GDS1 (ENSCDRG00005006817)	STPG2 (ENSCDRG00005008261)	ENSCDRG00005008544	PDHA2 (ENSCDRG00005008550)	UNC5C (ENSCDRG00005008588)	ENSCDRG00005008779	BMPR1B (ENSCDRG00005008805)	PDLIM5 (ENSCDRG00005008970)	HPGDS (ENSCDRG00005009472)
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000155016.w.a	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Yarkand deer	MODERN SPECIES	22	VEZT (ENSCHYG00000001339)	FGD6 (ENSCHYG00000001259)	NR2C1 (ENSCHYG00000001219)	NDUFA12 (ENSCHYG00000001181)	TMCC3 (ENSCHYG00000001134)	CEP83 (ENSCHYG00000001094) #7	PLXNC1 (ENSCHYG00000000862) #8	CRADD (ENSCHYG00000000817) #10	ENSCHYG00000000799 #11	ENSCHYG00000000783	ENSCHYG00000000768 #12	UBE2N (ENSCHYG00000000745) ##13	ENSCHYG00000000720 #14	EEA1 (ENSCHYG00000000516) #16	PLEKHG7 (ENSCHYG00000000447) #18	BTG1 (ENSCHYG00000000427) #22	DCN (ENSCHYG00000000364) #24	LUM (ENSCHYG00000000293) #25	KERA (ENSCHYG00000000274) #26	EPYC (ENSCHYG00000000260) #27	CCER1 (ENSCHYG00000000252)	ATP2B1 (ENSCHYG00000000182) #29	POC1B (ENSCHYG00000000134) #30	DUSP6 (ENSCHYG00000000104) #31	ENSCHYG00000000077	KITLG (ENSCHYG00000000054) #32	TMTC3 (ENSCHYG00000023107) #34	CEP290 (ENSCHYG00000022974) #35	C12orf29 (ENSCHYG00000022924) #36	C12orf50 (ENSCHYG00000022875)	MGAT4C (ENSCHYG00000022826)
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000155016.w.a	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000155016.w.a	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00950000182878.b.b.k.b	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Caprinae	ANCESTRAL SPECIES		ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00940000153305.c.e.a	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00950000182878.b.b.k.b	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Rambouillet Sheep	MODERN SPECIES	19	VEZT (ENSOARG00020014442)	FGD6 (ENSOARG00020014249)	NR2C1 (ENSOARG00020014046)	NDUFA12 (ENSOARG00020013894)	TMCC3 (ENSOARG00020013827)	CEP83 (ENSOARG00020013661) #7	PLXNC1 (ENSOARG00020012556) #8	ENSOARG00020012474	CRADD (ENSOARG00020012437) #10	SOCS2 (ENSOARG00020012403) #11	MRPL42 (ENSOARG00020012331) #12	UBE2N (ENSOARG00020012230) ##13	ENSOARG00020012168 #14	EEA1 (ENSOARG00020010609) #16	PLEKHG7 (ENSOARG00020010208) #18	BTG1 (ENSOARG00020010138) #22	ENSOARG00020010084	DCN (ENSOARG00020009720) #24	LUM (ENSOARG00020009658) #25	KERA (ENSOARG00020009608) #26	EPYC (ENSOARG00020009542) #27	CCER1 (ENSOARG00020009520)	ENSOARG00020009475	ATP2B1 (ENSOARG00020008845) #29	POC1B (ENSOARG00020008549) #30	DUSP6 (ENSOARG00020008467) #31	ENSOARG00020008432	KITLG (ENSOARG00020008140) #32	TMTC3 (ENSOARG00020008061) #34	ENSOARG00020008023 #35	C3H12orf29 (ENSOARG00020007796) #36
Goat	MODERN SPECIES	24	FGD6 (ENSCHIG00000020399)	NR2C1 (ENSCHIG00000014160)	NDUFA12 (ENSCHIG00000018443)	TMCC3 (ENSCHIG00000020232)	CEP83 (ENSCHIG00000013917) #7	PLXNC1 (ENSCHIG00000011272) #8	ENSCHIG00000001717	CRADD (ENSCHIG00000023376) #10	SOCS2 (ENSCHIG00000027066) #11	MRPL42 (ENSCHIG00000014921) #12	ENSCHIG00000021426	ENSCHIG00000025703 ##13	ENSCHIG00000022798 #14	EEA1 (ENSCHIG00000021418) #16	PLEKHG7 (ENSCHIG00000026476) #18	BTG1 (ENSCHIG00000012095) #22	DCN (ENSCHIG00000018030) #24	LUM (ENSCHIG00000023831) #25	KERA (ENSCHIG00000003728) #26	EPYC (ENSCHIG00000000730) #27	CCER1 (ENSCHIG00000003024)	ATP2B1 (ENSCHIG00000024254) #29	POC1B (ENSCHIG00000026402) #30	DUSP6 (ENSCHIG00000011320) #31	KITLG (ENSCHIG00000025211) #32	TMTC3 (ENSCHIG00000007192) #34	CEP290 (ENSCHIG00000010170) #35	C12orf29 (ENSCHIG00000011970) #36	C12orf50 (ENSCHIG00000016372)	MGAT4C (ENSCHIG00000026547)	NTS (ENSCHIG00000015085)
Bovinae	ANCESTRAL SPECIES	17	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.h	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.b.b.a.a	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00950000182878.b.b.k.b	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Bos	ANCESTRAL SPECIES	2	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.h.b	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000153305.d.ab.b.a.a	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b.z.a #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.b.b.a.a.a	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00950000182878.b.b.k.b	ENSGT00390000018272.c #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000158165	ENSGT00390000005848.h.a.a	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000153305.d.ab.b.a.a	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00540000070023.d ##13	ENSGT00940000155210.a.b.z.a #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.b.b.a.a.a	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272.c #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Hybrid Bos Indicus	MODERN SPECIES	24	CRADD (ENSBIXG00005011535) #10	ENSBIXG00005011494	SOCS2 (ENSBIXG00005011463) #11	MRPL42 (ENSBIXG00005001077) #12	UBE2N (ENSBIXG00005001062) ##13	ENSBIXG00005011234	ENSBIXG00005001049 #14	ENSBIXG00005011214	ENSBIXG00005011210	ENSBIXG00005011205	ENSBIXG00005011197	ENSBIXG00005011181	EEA1 (ENSBIXG00005001022) #16	PLEKHG7 (ENSBIXG00005000562) #18	ENSBIXG00005010925	ENSBIXG00005000962 #22	DCN (ENSBIXG00005010822) #24	LUM (ENSBIXG00005000930) #25	KERA (ENSBIXG00005010696) #26	EPYC (ENSBIXG00005000920) #27	CCER1 (ENSBIXG00005010660)	ATP2B1 (ENSBIXG00005000696) #29	POC1B (ENSBIXG00005010375) #30	DUSP6 (ENSBIXG00005010324) #31	ENSBIXG00005010310	KITLG (ENSBIXG00005010279) #32	TMTC3 (ENSBIXG00005000813) #34	CEP290 (ENSBIXG00005010227) #35	C12orf29 (ENSBIXG00005010182) #36	C12orf50 (ENSBIXG00005006418)	ENSBIXG00005000773
Cow	MODERN SPECIES	24	NR2C1 (ENSBTAG00000017729)	NDUFA12 (ENSBTAG00000014669)	TMCC3 (ENSBTAG00000014375)	CEP83 (ENSBTAG00000004484) #7	ENSBTAG00000052916	PLXNC1 (ENSBTAG00000011245) #8	ENSBTAG00000053589	CRADD (ENSBTAG00000051267) #10	SOCS2 (ENSBTAG00000012007) #11	MRPL42 (ENSBTAG00000002708) #12	UBE2N (ENSBTAG00000021767) ##13	NUDT4 (ENSBTAG00000007447) #14	EEA1 (ENSBTAG00000000421) #16	PLEKHG7 (ENSBTAG00000000818) #18	ENSBTAG00000033600	BTG1 (ENSBTAG00000020330) #22	DCN (ENSBTAG00000003505) #24	LUM (ENSBTAG00000001745) #25	KERA (ENSBTAG00000014340) #26	EPYC (ENSBTAG00000007990) #27	CCER1 (ENSBTAG00000007035)	ATP2B1 (ENSBTAG00000009552) #29	POC1B (ENSBTAG00000000687) #30	DUSP6 (ENSBTAG00000004587) #31	KITLG (ENSBTAG00000017549) #32	TMTC3 (ENSBTAG00000009023) #34	ENSBTAG00000051348 #35	ENSBTAG00000052837	CEP290 (ENSBTAG00000018745) #35	C5H12orf29 (ENSBTAG00000018743) #36	C5H12orf50 (ENSBTAG00000018180)
Bos_a	ANCESTRAL SPECIES	3	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.h.b	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000153305.d.ab.b.a.a	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b.z.a #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00950000182878.b.b.k.b	ENSGT00390000018272.c #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Domestic yak	MODERN SPECIES	24	FGD6 (ENSBGRG00000000973)	NR2C1 (ENSBGRG00000001106)	NDUFA12 (ENSBGRG00000001191)	TMCC3 (ENSBGRG00000001238)	CEP83 (ENSBGRG00000001277) #7	PLXNC1 (ENSBGRG00000001355) #8	ENSBGRG00000001744 #10	SOCS2 (ENSBGRG00000001760) #11	MRPL42 (ENSBGRG00000001775) #12	ENSBGRG00000001804	UBE2N (ENSBGRG00000001816) ##13	ENSBGRG00000001842 #14	ENSBGRG00000001871	EEA1 (ENSBGRG00000001904) #16	PLEKHG7 (ENSBGRG00000002088) #18	ENSBGRG00000002139 #22	ENSBGRG00000002152	DCN (ENSBGRG00000002168) #24	LUM (ENSBGRG00000002309) #25	KERA (ENSBGRG00000002328) #26	EPYC (ENSBGRG00000002339) #27	CCER1 (ENSBGRG00000002370)	ATP2B1 (ENSBGRG00000002414) #29	POC1B (ENSBGRG00000002622) #30	GALNT4 (ENSBGRG00000002682)	DUSP6 (ENSBGRG00000002711) #31	ENSBGRG00000002741	KITLG (ENSBGRG00000002777) #32	TMTC3 (ENSBGRG00000002830) #34	CEP290 (ENSBGRG00000002844) #35	ENSBGRG00000002890
Wild yak	MODERN SPECIES	2801																BTG1 (ENSBMUG00000022564) #22
American bison	MODERN SPECIES	3057						CEP83 (ENSBBBG00000005097) #7	PLXNC1 (ENSBBBG00000020000) #8	ENSBBBG00000019943 #10	SOCS2 (ENSBBBG00000019936) #11	ENSBBBG00000019921 #12	ENSBBBG00000019905 ##13	ENSBBBG00000019880 #14	EEA1 (ENSBBBG00000019856) #16	ENSBBBG00000019819 #18	ENSBBBG00000019784	BTG1 (ENSBBBG00000007234) #22
Siberian musk deer	MODERN SPECIES	149															ENSMMSG00000013084 #19	BTG1 (ENSMMSG00000013074) #22	DCN (ENSMMSG00000012969) #24	LUM (ENSMMSG00000012950) #25	KERA (ENSMMSG00000012932) #26	EPYC (ENSMMSG00000012903) #27	CCER1 (ENSMMSG00000012892)
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.j.a	ENSGT00510000047418.m.b	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.a.a #13	ENSGT00940000155210.a.b.u #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Blue whale	MODERN SPECIES	1	VEZT (ENSBMSG00010009384)	FGD6 (ENSBMSG00010009375)	NR2C1 (ENSBMSG00010009358)	ENSBMSG00010009348	ENSBMSG00010009334	TMCC3 (ENSBMSG00010009320)	CEP83 (ENSBMSG00010009304) #7	PLXNC1 (ENSBMSG00010009279) #8	ENSBMSG00010009257 #10	SOCS2 (ENSBMSG00010009251) #11	MRPL42 (ENSBMSG00010009238) #12	ENSBMSG00010009224 ##13	ENSBMSG00010009214 #14	EEA1 (ENSBMSG00010009204) #16	PLEKHG7 (ENSBMSG00010009181) #18	ENSBMSG00010009169 #22	ENSBMSG00010009163	DCN (ENSBMSG00010009144) #24	LUM (ENSBMSG00010009137) #25	KERA (ENSBMSG00010009128) #26	EPYC (ENSBMSG00010009120) #27	CCER1 (ENSBMSG00010009109)	ATP2B1 (ENSBMSG00010009037) #29	POC1B (ENSBMSG00010009000) #30	DUSP6 (ENSBMSG00010008987) #31	ENSBMSG00010008979	ENSBMSG00010008968	KITLG (ENSBMSG00010008954) #32	TMTC3 (ENSBMSG00010008926) #34	ENSBMSG00010008884 #35	C12orf29 (ENSBMSG00010008863) #36
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.j.a	ENSGT00510000047418.m.b	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.a.a #13	ENSGT00940000155210.a.b.u #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.j.a	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.a.a #13	ENSGT00940000155210.a.b.u #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Dolphin	MODERN SPECIES	6746																BTG1 (ENSTTRG00000014118) #22
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.j.a	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b.u #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Vaquita	MODERN SPECIES	1	VEZT (ENSPSNG00000013799)	FGD6 (ENSPSNG00000014016)	NR2C1 (ENSPSNG00000014173)	ENSPSNG00000014297	ENSPSNG00000014399	TMCC3 (ENSPSNG00000014446)	CEP83 (ENSPSNG00000014569) #7	PLXNC1 (ENSPSNG00000014704) #8	CRADD (ENSPSNG00000015305) #10	SOCS2 (ENSPSNG00000015360) #11	MRPL42 (ENSPSNG00000015405) #12	UBE2N (ENSPSNG00000015507) ##13	ENSPSNG00000015623 #14	EEA1 (ENSPSNG00000015763) #16	ENSPSNG00000015919 #18	BTG1 (ENSPSNG00000004224) #22	DCN (ENSPSNG00000004313) #24	LUM (ENSPSNG00000004371) #25	KERA (ENSPSNG00000004384) #26	EPYC (ENSPSNG00000004398) #27	CCER1 (ENSPSNG00000004420)	ATP2B1 (ENSPSNG00000004461) #29	POC1B (ENSPSNG00000004557) #30	DUSP6 (ENSPSNG00000004604) #31	KITLG (ENSPSNG00000004647) #32	TMTC3 (ENSPSNG00000004690) #34	CEP290 (ENSPSNG00000004767) #35	C12orf29 (ENSPSNG00000004829) #36	C12orf50 (ENSPSNG00000004876)	MGAT4C (ENSPSNG00000004935)	NTS (ENSPSNG00000004962)
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848.j.a	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb.kb.b #12	ENSGT00540000070023.c.a.a #13	ENSGT00940000155210.a.b.u #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000012138.a.b.t.bb.a.a.d	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Beluga whale	MODERN SPECIES	38								ENSDLEG00000004792 #10	SOCS2 (ENSDLEG00000004798) #11	ENSDLEG00000004812 #12	ENSDLEG00000004828 #13	NUDT4 (ENSDLEG00000004835) #14	EEA1 (ENSDLEG00000004852) #16	ENSDLEG00000004902 #18	ENSDLEG00000004917 #19	BTG1 (ENSDLEG00000004924) #22	DCN (ENSDLEG00000004937) #24	LUM (ENSDLEG00000004945) #25	KERA (ENSDLEG00000004953) #26	EPYC (ENSDLEG00000004960) #27	CCER1 (ENSDLEG00000004965)	ATP2B1 (ENSDLEG00000004979) #29	POC1B (ENSDLEG00000005012) #30	DUSP6 (ENSDLEG00000005047) #31	ENSDLEG00000005056	KITLG (ENSDLEG00000005063) #32	TMTC3 (ENSDLEG00000005092) #34	CEP290 (ENSDLEG00000005127) #35	CUNH12orf29 (ENSDLEG00000005151) #36	C12orf50 (ENSDLEG00000005169)	MGAT4C (ENSDLEG00000005205)
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	307	BMPR1B (ENSMMNG00015011501)	PDLIM5 (ENSMMNG00015011438)	ENSMMNG00015011412	HPGDS (ENSMMNG00015011400)	SMARCAD1 (ENSMMNG00015011369)	ATOH1 (ENSMMNG00015011356)	ENSMMNG00015011351	GRID2 (ENSMMNG00015011268)	CCSER1 (ENSMMNG00015011215)	ENSMMNG00015011167	MMRN1 (ENSMMNG00015011136)	SNCA (ENSMMNG00015011091)	ENSMMNG00015011065	GPRIN3 (ENSMMNG00015011061)	TIGD2 (ENSMMNG00015011054)	ENSMMNG00015011038 #22	FAM13A (ENSMMNG00015010904)	NAP1L5 (ENSMMNG00015010819)	HERC3 (ENSMMNG00015010732)	ENSMMNG00015010704	HERC5 (ENSMMNG00015010595)	PPM1K (ENSMMNG00015010529)	ENSMMNG00015010427	PKD2 (ENSMMNG00015010375)	SPP1 (ENSMMNG00015010339)	MEPE (ENSMMNG00015010312)	IBSP (ENSMMNG00015010295)	DMP1 (ENSMMNG00015010277)	ENSMMNG00015010260	SPARCL1 (ENSMMNG00015010232)	NUDT9 (ENSMMNG00015010205)
Narwhal	MODERN SPECIES	313	VEZT (ENSMMNG00015021810)	FGD6 (ENSMMNG00015021789)	NR2C1 (ENSMMNG00015021774)	ENSMMNG00015021766	TMCC3 (ENSMMNG00015021750)	ENSMMNG00015021743	CEP83 (ENSMMNG00015021737) #7	PLXNC1 (ENSMMNG00015021714) #8	CRADD (ENSMMNG00015021699) #10	SOCS2 (ENSMMNG00015021693) #11	ENSMMNG00015021684 #12	ENSMMNG00015021674 #13	ENSMMNG00015021656 #14	EEA1 (ENSMMNG00015021607) #16	ENSMMNG00015021573 #18	ENSMMNG00015021548 #22	ENSMMNG00015021543	DCN (ENSMMNG00015021512) #24	LUM (ENSMMNG00015021485) #25	KERA (ENSMMNG00015021476) #26	EPYC (ENSMMNG00015021465) #27	CCER1 (ENSMMNG00015021459)	ATP2B1 (ENSMMNG00015021401) #29	POC1B (ENSMMNG00015021321) #30	DUSP6 (ENSMMNG00015021301) #31	ENSMMNG00015021288	KITLG (ENSMMNG00015021271) #32	TMTC3 (ENSMMNG00015021249) #34	CEP290 (ENSMMNG00015021183) #35	C12orf29 (ENSMMNG00015021146) #36	C12orf50 (ENSMMNG00015021109)
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	18	BMPR1B (ENSPCTG00005003397)	PDLIM5 (ENSPCTG00005003263)	HPGDS (ENSPCTG00005003222)	SMARCAD1 (ENSPCTG00005003209)	ATOH1 (ENSPCTG00005003202)	GRID2 (ENSPCTG00005003159)	ENSPCTG00005003125	ENSPCTG00005003117	CCSER1 (ENSPCTG00005003085)	ENSPCTG00005003070	MMRN1 (ENSPCTG00005003048)	SNCA (ENSPCTG00005002998)	ENSPCTG00005002973	GPRIN3 (ENSPCTG00005002964)	TIGD2 (ENSPCTG00005002958)	ENSPCTG00005002946 #22	FAM13A (ENSPCTG00005002764)	NAP1L5 (ENSPCTG00005002699)	HERC3 (ENSPCTG00005002665)	PYURF (ENSPCTG00005002646)	PIGY (ENSPCTG00005002636)	HERC5 (ENSPCTG00005002573)	PPM1K (ENSPCTG00005002532)	ABCG2 (ENSPCTG00005002498)	ENSPCTG00005002475	PKD2 (ENSPCTG00005002432)	SPP1 (ENSPCTG00005002383)	MEPE (ENSPCTG00005002360)	IBSP (ENSPCTG00005002349)	DMP1 (ENSPCTG00005002286)	ENSPCTG00005002264
Sperm whale	MODERN SPECIES	17	FGD6 (ENSPCTG00005005127)	NR2C1 (ENSPCTG00005005039)	NDUFA12 (ENSPCTG00005005007)	ENSPCTG00005004984	TMCC3 (ENSPCTG00005004963)	CEP83 (ENSPCTG00005022031) #7	PLXNC1 (ENSPCTG00005022010) #8	MRPL42 (ENSPCTG00005021997) #12	SOCS2 (ENSPCTG00005021994) #11	CRADD (ENSPCTG00005021988) #10	ENSPCTG00005021985	ENSPCTG00005021981 ##13	NUDT4 (ENSPCTG00005021978) #14	EEA1 (ENSPCTG00005021847) #16	ENSPCTG00005021770 #18	BTG1 (ENSPCTG00005021739) #22	ENSPCTG00005021713	DCN (ENSPCTG00005021653) #24	LUM (ENSPCTG00005021643) #25	KERA (ENSPCTG00005021629) #26	EPYC (ENSPCTG00005021606) #27	ATP2B1 (ENSPCTG00005021464) #29	POC1B (ENSPCTG00005021406) #30	DUSP6 (ENSPCTG00005021369) #31	ENSPCTG00005021346	KITLG (ENSPCTG00005021308) #32	TMTC3 (ENSPCTG00005021241) #34	CEP290 (ENSPCTG00005020898) #35	C6H12orf29 (ENSPCTG00005020851) #36	C12orf50 (ENSPCTG00005020740)	MGAT4C (ENSPCTG00005020711)
Suina	ANCESTRAL SPECIES	4	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491.lb #12	ENSGT00540000070023.c.b.b ##13	ENSGT00540000070023.c.a.a #13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000163607	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Chacoan peccary	MODERN SPECIES	873	METAP2 (ENSCWAG00000016713)	ENSCWAG00000016653	VEZT (ENSCWAG00000016620)	FGD6 (ENSCWAG00000016343)	NR2C1 (ENSCWAG00000016281)	ENSCWAG00000016201	TMCC3 (ENSCWAG00000016118)	CEP83 (ENSCWAG00000016082) #7	PLXNC1 (ENSCWAG00000015821) #8	CRADD (ENSCWAG00000015724) #10	SOCS2 (ENSCWAG00000015795) #11	ENSCWAG00000015684 #12	UBE2N (ENSCWAG00000015634) ##13	ENSCWAG00000015563 #14	EEA1 (ENSCWAG00000015529) #16	BTG1 (ENSCWAG00000015489) #22	DCN (ENSCWAG00000015305) #24	LUM (ENSCWAG00000015263) #25	KERA (ENSCWAG00000015238) #26	EPYC (ENSCWAG00000015189) #27	CCER1 (ENSCWAG00000015173)	ATP2B1 (ENSCWAG00000015008) #29	POC1B (ENSCWAG00000014907) #30	DUSP6 (ENSCWAG00000014861) #31	KITLG (ENSCWAG00000014774) #32	TMTC3 (ENSCWAG00000014704) #34	CEP290 (ENSCWAG00000014556) #35	C12orf29 (ENSCWAG00000014480) #36	C12orf50 (ENSCWAG00000014275)
Pig	MODERN SPECIES	13	FGD6 (ENSSSCG00000000901)	NR2C1 (ENSSSCG00000000902)	ENSSSCG00000000905	TMCC3 (ENSSSCG00000000906)	CEP83 (ENSSSCG00000024563) #7	PLXNC1 (ENSSSCG00000000907) #8	ENSSSCG00000048542	CRADD (ENSSSCG00000000910) #10	SOCS2 (ENSSSCG00000053891) #11	ENSSSCG00000030478 #12	ENSSSCG00000059484	ENSSSCG00000000908 #13	ENSSSCG00000040056 #14	EEA1 (ENSSSCG00000044340) #16	ENSSSCG00000050856	BTG1 (ENSSSCG00000035790) #22	ENSSSCG00000051747	ENSSSCG00000055305	ENSSSCG00000061113	DCN (ENSSSCG00000000915) #24	LUM (ENSSSCG00000000916) #25	KERA (ENSSSCG00000000917) #26	EPYC (ENSSSCG00000000918) #27	CCER1 (ENSSSCG00000039400)	ENSSSCG00000049831	ENSSSCG00000062710	ATP2B1 (ENSSSCG00000027898) #29	ENSSSCG00000042626	POC1B (ENSSSCG00000000920) #30	GALNT4 (ENSSSCG00000043102)	DUSP6 (ENSSSCG00000037910) #31
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.a.a #13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Xenarthra	ANCESTRAL SPECIES	227														ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b
Armadillo	MODERN SPECIES	1674													ENSDNOG00000041750	EEA1 (ENSDNOG00000001760) #16	PLEKHG7 (ENSDNOG00000036407) #18	BTG1 (ENSDNOG00000002220) #22	DCN (ENSDNOG00000038481) #24	LUM (ENSDNOG00000044154) #25	KERA (ENSDNOG00000014143) #26	EPYC (ENSDNOG00000007775) #27	CCER1 (ENSDNOG00000045768)	ENSDNOG00000042809	ENSDNOG00000032221	ATP2B1 (ENSDNOG00000014419) #29	POC1B (ENSDNOG00000011916) #30	DUSP6 (ENSDNOG00000011901) #31	KITLG (ENSDNOG00000036474) #32	TMTC3 (ENSDNOG00000041271) #34	ENSDNOG00000047073 #35	ENSDNOG00000030785 #35	C12orf29 (ENSDNOG00000004346) #36
Sloth	MODERN SPECIES	11077																BTG1 (ENSCHOG00000004246) #22
Afrotheria	ANCESTRAL SPECIES	8	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.a.a #13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Afrotheria_a	ANCESTRAL SPECIES	8	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.a.a #13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00430000032851 #19	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574
Elephant	MODERN SPECIES	196	VEZT (ENSLAFG00000005868)	FGD6 (ENSLAFG00000005863)	NR2C1 (ENSLAFG00000005858)	NDUFA12 (ENSLAFG00000030887)	TMCC3 (ENSLAFG00000011565)	CEP83 (ENSLAFG00000017800) #7	PLXNC1 (ENSLAFG00000017782) #8	CRADD (ENSLAFG00000017380) #10	SOCS2 (ENSLAFG00000009745) #11	MRPL42 (ENSLAFG00000013779) #12	ENSLAFG00000028985 #13	ENSLAFG00000013776 #14	EEA1 (ENSLAFG00000001211) #16	ENSLAFG00000001209 #18	ENSLAFG00000020811 #19	BTG1 (ENSLAFG00000006031) #22	ENSLAFG00000030088	DCN (ENSLAFG00000006742) #24	LUM (ENSLAFG00000006738) #25	KERA (ENSLAFG00000031966) #26	EPYC (ENSLAFG00000018235) #27	CCER1 (ENSLAFG00000010521)	ATP2B1 (ENSLAFG00000015217) #29	POC1B (ENSLAFG00000017550) #30	DUSP6 (ENSLAFG00000018327) #31	KITLG (ENSLAFG00000006294) #32	TMTC3 (ENSLAFG00000015104) #34	CEP290 (ENSLAFG00000013292) #35	C12orf29 (ENSLAFG00000013286) #36	C12orf50 (ENSLAFG00000005231)	MGAT4C (ENSLAFG00000007280)
Hyrax	MODERN SPECIES	10424																BTG1 (ENSPCAG00000010429) #22
Tenrec	MODERN SPECIES	17401																BTG1 (ENSETEG00000003130) #22
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448 #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Opossum	MODERN SPECIES	7	VEZT (ENSMODG00000008194)	FGD6 (ENSMODG00000008231)	ENSMODG00000025050	NR2C1 (ENSMODG00000008267)	TMCC3 (ENSMODG00000008293)	CEP83 (ENSMODG00000009361) #7	PLXNC1 (ENSMODG00000009408) #8	ENSMODG00000046679	ENSMODG00000027316	SOCS2 (ENSMODG00000009444) #11	ENSMODG00000046598 #12	UBE2N (ENSMODG00000009451) ##13	ENSMODG00000009468 #14	EEA1 (ENSMODG00000009488) #16	PLEKHG7 (ENSMODG00000009492) #18	BTG1 (ENSMODG00000009503) #22	ENSMODG00000009509	DCN (ENSMODG00000009654) #24	LUM (ENSMODG00000009667) #25	KERA (ENSMODG00000009669) #26	EPYC (ENSMODG00000009682) #27	ENSMODG00000041109	ENSMODG00000025060	ENSMODG00000028879	ATP2B1 (ENSMODG00000009874) #29	POC1B (ENSMODG00000009882) #30	ENSMODG00000009687	DDX17 (ENSMODG00000009681)	DMC1 (ENSMODG00000009655)	ENSMODG00000009641	CBY1 (ENSMODG00000009638)
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448.c #10	ENSGT00940000170788	ENSGT00390000014448.d #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382.b #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000022810	ENSSHAG00000028268	ENSSHAG00000013440	TMCC3 (ENSSHAG00000011196)	CEP83 (ENSSHAG00000010076) #7	PLXNC1 (ENSSHAG00000009385) #8	ENSSHAG00000031974	ENSSHAG00000006278 #10	SOCS2 (ENSSHAG00000021457) #11	MRPL42 (ENSSHAG00000021616) #12	UBE2N (ENSSHAG00000021381) ##13	ENSSHAG00000029390 #14	ENSSHAG00000027144	EEA1 (ENSSHAG00000015853) #16	PLEKHG7 (ENSSHAG00000015586) #18	ENSSHAG00000024039 #22	ENSSHAG00000021233 #24	ENSSHAG00000006180 #24	LUM (ENSSHAG00000005444) #25	KERA (ENSSHAG00000004631) #26	EPYC (ENSSHAG00000002667) #27	ENSSHAG00000026485	ENSSHAG00000022396	ATP2B1 (ENSSHAG00000008050) #29	POC1B (ENSSHAG00000022843) #30	ENSSHAG00000004137 #31	ENSSHAG00000031842 #32	ENSSHAG00000002521	ENSSHAG00000006054	ENSSHAG00000027542	ENSSHAG00000001856
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448.c #10	ENSGT00940000170788	ENSGT00390000014448.d #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382.b #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A #7	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #8	ENSGT00390000014448.c #10	ENSGT00940000170788	ENSGT00390000014448.d #10	ENSGT00940000157983 #11	ENSGT00390000010491 #12	ENSGT00540000070023.c.b.b ##13	ENSGT00940000155210.a.b #14	ENSGT00940000156910 #16	ENSGT00510000046843.b #18	ENSGT00950000182952.C #22	ENSGT00940000158382.b #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529	ENSGT00940000158686 #29	ENSGT00940000163607	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #34	ENSGT00730000111039.C #35	ENSGT00500000044938 #36	ENSGT00920000149095.b	ENSGT00940000155352
koala	MODERN SPECIES	115	VEZT (ENSPCIG00000036475)	ENSPCIG00000011367	NDUFA12 (ENSPCIG00000011363)	TMCC3 (ENSPCIG00000030977)	CEP83 (ENSPCIG00000005919) #7	PLXNC1 (ENSPCIG00000005924) #8	ENSPCIG00000035562 #10	ENSPCIG00000001373 #10	SOCS2 (ENSPCIG00000001405) #11	ENSPCIG00000001472 #12	UBE2N (ENSPCIG00000001489) ##13	ENSPCIG00000001505 #14	ENSPCIG00000034890	ENSPCIG00000034635 #16	PLEKHG7 (ENSPCIG00000001619) #18	BTG1 (ENSPCIG00000031006) #22	DCN (ENSPCIG00000026071) #24	LUM (ENSPCIG00000026073) #25	KERA (ENSPCIG00000026566) #26	EPYC (ENSPCIG00000008580) #27
Common wonbat	MODERN SPECIES	1095								ENSVURG00010015256	ENSVURG00010015261 #10	SOCS2 (ENSVURG00010015269) #11	MRPL42 (ENSVURG00010015281) #12	UBE2N (ENSVURG00010015291) ##13	ENSVURG00010015301 #14	EEA1 (ENSVURG00010015326) #16	ENSVURG00010015374 #18	BTG1 (ENSVURG00010015385) #22	DCN (ENSVURG00010015394) #24	LUM (ENSVURG00010015406) #25	KERA (ENSVURG00010015412) #26	EPYC (ENSVURG00010015421) #27	ENSVURG00010015430	ENSVURG00010015437	ATP2B1 (ENSVURG00010015461) #29	POC1B (ENSVURG00010015496) #30	GALNT4 (ENSVURG00010015516)	DUSP6 (ENSVURG00010015543) #31	KITLG (ENSVURG00010015559) #32	TMTC3 (ENSVURG00010015606) #34	CEP290 (ENSVURG00010015792) #35	C12orf29 (ENSVURG00010015845) #36	C12orf50 (ENSVURG00010015858)
Wallaby	MODERN SPECIES	10645																BTG1 (ENSMEUG00000001126) #22