Tetrapoda	DUPLICATION
Tetrapoda	ANCESTRAL SPECIES	21	ENSGT00950000182812.A	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c #18	ENSGT00950000182969.B.c.a.a.c #22	ENSGT00940000155258 #19	ENSGT00940000154403	ENSGT00950000183311 #24	ENSGT00940000161311 #25	ENSGT00940000161077 #26	ENSGT00950000182969.B.d #27	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000165938	ENSGT00940000158212.A
Anura	ANCESTRAL SPECIES	15	ENSGT00950000182812.A	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT00390000014792.a #16	ENSGT00390000015789.c #18	ENSGT00940000155258 #19	ENSGT00950000182969.B.c.a.a.c #22	ENSGT00950000183311.a ##24	ENSGT00940000154403	ENSGT00950000183311.b.a #23	ENSGT00950000183311.b.b #24	ENSGT00940000161311 #25	ENSGT00940000161077 #26	ENSGT00950000182969.B.d #27	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.m.b.b #29	ENSGT00940000159382.m.b.a #31	ENSGT00940000159382.m.a.b #32	ENSGT00940000159382.m.a.a #36	ENSGT00940000159382.n #37	ENSGT00940000159655	ENSGT00390000003628.b
Frog	DUPLICATION
Frog	MODERN SPECIES	1	cnp (ENSXETG00000036371) #7	odad4 (ENSXETG00000002294) #8	acly (ENSXETG00000002292) #9	klhl11 (ENSXETG00000042941) #10	nt5c3b (ENSXETG00000002290) #11	fkbp10 (ENSXETG00000002288) #12	p3h4 (ENSXETG00000002284) #13	jup (ENSXETG00000006970) #14	hap1 (ENSXETG00000012489) #15	gast (ENSXETG00000012490) #16	terf2ip (ENSXETG00000012487) #17	eif1 (ENSXETG00000025051) #18	krt70 (ENSXETG00000012488) #19	krt19 (ENSXETG00000012482) #20	krt9.1 (ENSXETG00000038225) #21	krt9.2 (ENSXETG00000035234) #22	krt15.1 (ENSXETG00000029985) #23	krt15.2 (ENSXETG00000017467) #24	krt34 (ENSXETG00000036344) #25	krt23 (ENSXETG00000040013) #26	ENSXETG00000045090 #27	krt12.1 (ENSXETG00000045813) #28	krt12.2 (ENSXETG00000021341) #29	krt20 (ENSXETG00000030511) #30	krt12.3 (ENSXETG00000025345) #31	krt12.6 (ENSXETG00000037468) #32	krt53 (ENSXETG00000031985) #33	ENSXETG00000041456 #34	ENSXETG00000043984 #35	krt55 (ENSXETG00000025340) #36	krt55 (ENSXETG00000025338) #37
Frog	MODERN SPECIES	1	dnajc7 (ENSXETG00000002295)	cnp (ENSXETG00000036371) #7	odad4 (ENSXETG00000002294) #8	acly (ENSXETG00000002292) #9	klhl11 (ENSXETG00000042941) #10	nt5c3b (ENSXETG00000002290) #11	fkbp10 (ENSXETG00000002288) #12	p3h4 (ENSXETG00000002284) #13	jup (ENSXETG00000006970) #14	hap1 (ENSXETG00000012489) #15	gast (ENSXETG00000012490) #16	terf2ip (ENSXETG00000012487) #17	eif1 (ENSXETG00000025051) #18	krt70 (ENSXETG00000012488) #19	krt19 (ENSXETG00000012482) #20	krt9.1 (ENSXETG00000038225) #21	krt9.2 (ENSXETG00000035234) #22	krt15.1 (ENSXETG00000029985) #23	krt15.2 (ENSXETG00000017467) #24	krt34 (ENSXETG00000036344) #25	krt23 (ENSXETG00000040013) #26	ENSXETG00000045090 #27	krt12.1 (ENSXETG00000045813) #28	krt12.2 (ENSXETG00000021341) #29	krt20 (ENSXETG00000030511) #30	krt12.3 (ENSXETG00000025345) #31	krt12.6 (ENSXETG00000037468) #32	krt53 (ENSXETG00000031985) #33	ENSXETG00000041456 #34	ENSXETG00000043984 #35	krt55 (ENSXETG00000025340) #36
Frog	MODERN SPECIES	1	nkiras2 (ENSXETG00000002296)	dnajc7 (ENSXETG00000002295)	cnp (ENSXETG00000036371) #7	odad4 (ENSXETG00000002294) #8	acly (ENSXETG00000002292) #9	klhl11 (ENSXETG00000042941) #10	nt5c3b (ENSXETG00000002290) #11	fkbp10 (ENSXETG00000002288) #12	p3h4 (ENSXETG00000002284) #13	jup (ENSXETG00000006970) #14	hap1 (ENSXETG00000012489) #15	gast (ENSXETG00000012490) #16	terf2ip (ENSXETG00000012487) #17	eif1 (ENSXETG00000025051) #18	krt70 (ENSXETG00000012488) #19	krt19 (ENSXETG00000012482) #20	krt9.1 (ENSXETG00000038225) #21	krt9.2 (ENSXETG00000035234) #22	krt15.1 (ENSXETG00000029985) #23	krt15.2 (ENSXETG00000017467) #24	krt34 (ENSXETG00000036344) #25	krt23 (ENSXETG00000040013) #26	ENSXETG00000045090 #27	krt12.1 (ENSXETG00000045813) #28	krt12.2 (ENSXETG00000021341) #29	krt20 (ENSXETG00000030511) #30	krt12.3 (ENSXETG00000025345) #31	krt12.6 (ENSXETG00000037468) #32	krt53 (ENSXETG00000031985) #33	ENSXETG00000041456 #34	ENSXETG00000043984 #35
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000025256 #25	ENSLLEG00000025822 #25	ENSLLEG00000026031 #25	ENSLLEG00000026162 #22	ENSLLEG00000026226 #25	ENSLLEG00000026285 #25	ENSLLEG00000026329 #25	ENSLLEG00000026388	ENSLLEG00000026422 #25	ENSLLEG00000026765 #19	ENSLLEG00000026866 #25	ENSLLEG00000026919 #25	ENSLLEG00000027000 #25	ENSLLEG00000027759 #25	ENSLLEG00000027858 #22	ENSLLEG00000027886 #22	KRT23 (ENSLLEG00000027913) #26	ENSLLEG00000027954 #27	ENSLLEG00000028003	ENSLLEG00000028013 #28	ENSLLEG00000028070 #29	ENSLLEG00000028103 #31	ENSLLEG00000028166 #31	ENSLLEG00000028459 #31	ENSLLEG00000028494 #31	ENSLLEG00000028611 #32	ENSLLEG00000028654 #36	ENSLLEG00000028707 #36	ENSLLEG00000028813	ENSLLEG00000028826 #37	ENSLLEG00000028876
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000024922 #25	ENSLLEG00000025256 #25	ENSLLEG00000025822 #25	ENSLLEG00000026031 #25	ENSLLEG00000026162 #22	ENSLLEG00000026226 #25	ENSLLEG00000026285 #25	ENSLLEG00000026329 #25	ENSLLEG00000026388	ENSLLEG00000026422 #25	ENSLLEG00000026765 #19	ENSLLEG00000026866 #25	ENSLLEG00000026919 #25	ENSLLEG00000027000 #25	ENSLLEG00000027759 #25	ENSLLEG00000027858 #22	ENSLLEG00000027886 #22	KRT23 (ENSLLEG00000027913) #26	ENSLLEG00000027954 #27	ENSLLEG00000028003	ENSLLEG00000028013 #28	ENSLLEG00000028070 #29	ENSLLEG00000028103 #31	ENSLLEG00000028166 #31	ENSLLEG00000028459 #31	ENSLLEG00000028494 #31	ENSLLEG00000028611 #32	ENSLLEG00000028654 #36	ENSLLEG00000028707 #36	ENSLLEG00000028813	ENSLLEG00000028826 #37
Leishan spiny toad	MODERN SPECIES	3	EIF1 (ENSLLEG00000023516) #18	ENSLLEG00000023614 #22	ENSLLEG00000023893 ##24	KRT15 (ENSLLEG00000023980)	ENSLLEG00000024134 #23	ENSLLEG00000024209 #24	ENSLLEG00000024257 #25	ENSLLEG00000024316 #25	ENSLLEG00000024414 #25	ENSLLEG00000024708 #19	ENSLLEG00000024790 #25	ENSLLEG00000024922 #25	ENSLLEG00000025256 #25	ENSLLEG00000025822 #25	ENSLLEG00000026031 #25	ENSLLEG00000026162 #22	ENSLLEG00000026226 #25	ENSLLEG00000026285 #25	ENSLLEG00000026329 #25	ENSLLEG00000026388	ENSLLEG00000026422 #25	ENSLLEG00000026765 #19	ENSLLEG00000026866 #25	ENSLLEG00000026919 #25	ENSLLEG00000027000 #25	ENSLLEG00000027759 #25	ENSLLEG00000027858 #22	ENSLLEG00000027886 #22	KRT23 (ENSLLEG00000027913) #26	ENSLLEG00000027954 #27	ENSLLEG00000028003
Leishan spiny toad	MODERN SPECIES	3	PHB1 (ENSLLEG00000020990)	ZNF652 (ENSLLEG00000021148)	TMEM98 (ENSLLEG00000021348)	ZNF281 (ENSLLEG00000021456)	ENSLLEG00000021561	ENSLLEG00000021596 #16	ENSLLEG00000021649 #15	JUP (ENSLLEG00000021971) #14	P3H4 (ENSLLEG00000022959) #13	FKBP10 (ENSLLEG00000023029) #12	NT5C3B (ENSLLEG00000023148) #11	ENSLLEG00000023302	ENSLLEG00000023380	ENSLLEG00000023489	EIF1 (ENSLLEG00000023516) #18	ENSLLEG00000023614 #22	ENSLLEG00000023893 ##24	KRT15 (ENSLLEG00000023980)	ENSLLEG00000024134 #23	ENSLLEG00000024209 #24	ENSLLEG00000024257 #25	ENSLLEG00000024316 #25	ENSLLEG00000024414 #25	ENSLLEG00000024708 #19	ENSLLEG00000024790 #25	ENSLLEG00000024922 #25	ENSLLEG00000025256 #25	ENSLLEG00000025822 #25	ENSLLEG00000026031 #25	ENSLLEG00000026162 #22	ENSLLEG00000026226 #25
Amniota	ANCESTRAL SPECIES	14	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c #18	ENSGT00950000182969.B.c.a.a.c #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000154403.a.a	ENSGT00950000183311 #24	ENSGT00940000161311 #25	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000160849	ENSGT00940000161783	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647
Sauria	DUPLICATION
Sauria	DUPLICATION
Sauria	ANCESTRAL SPECIES	26	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00390000015789.d ##18	ENSGT00940000163247	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000160849.p.a	ENSGT00940000161783.a	ENSGT00940000159655
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00940000157202	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00390000015789.d ##18	ENSGT00940000163247	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000160849.p.a	ENSGT00940000161783.b	ENSGT00940000159655
Archosauria	ANCESTRAL SPECIES	20	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000160849.p.a	ENSGT00940000161783.b	ENSGT00960000190892	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	61	NT5C3B (ENSCPRG00005003578) #11	FKBP10 (ENSCPRG00005003571) #12	P3H4 (ENSCPRG00005003567) #13	JUP (ENSCPRG00005003553) #14	ENSCPRG00005003538 #15	ENSCPRG00005003535	EIF1 (ENSCPRG00005003501) #18	ENSCPRG00005003496	KRT19 (ENSCPRG00005003494) #19	ENSCPRG00005003480	ENSCPRG00005003472	ENSCPRG00005003467	ENSCPRG00005003464	ENSCPRG00005003463	ENSCPRG00005003461	ENSCPRG00005003457 #22	ENSCPRG00005003452 #22	ENSCPRG00005003447	ENSCPRG00005003446	ENSCPRG00005003413 #25	ENSCPRG00005003305 #25	ENSCPRG00005003229 #25	KRT23 (ENSCPRG00005003211) #26	KRT20 (ENSCPRG00005003180) #30	KRT12 (ENSCPRG00005003161) #37	KRT10 (ENSCPRG00005003159)	KRT24 (ENSCPRG00005003146)	ENSCPRG00005003141	SMARCE1 (ENSCPRG00005003138)	CCR7 (ENSCPRG00005003131)	ENSCPRG00005003130
Australian saltwater crocodile	MODERN SPECIES	61	FKBP10 (ENSCPRG00005003571) #12	P3H4 (ENSCPRG00005003567) #13	JUP (ENSCPRG00005003553) #14	ENSCPRG00005003538 #15	ENSCPRG00005003535	EIF1 (ENSCPRG00005003501) #18	ENSCPRG00005003496	KRT19 (ENSCPRG00005003494) #19	ENSCPRG00005003480	ENSCPRG00005003472	ENSCPRG00005003467	ENSCPRG00005003464	ENSCPRG00005003463	ENSCPRG00005003461	ENSCPRG00005003457 #22	ENSCPRG00005003452 #22	ENSCPRG00005003447	ENSCPRG00005003446	ENSCPRG00005003413 #25	ENSCPRG00005003305 #25	ENSCPRG00005003229 #25	KRT23 (ENSCPRG00005003211) #26	KRT20 (ENSCPRG00005003180) #30	KRT12 (ENSCPRG00005003161) #37	KRT10 (ENSCPRG00005003159)	KRT24 (ENSCPRG00005003146)	ENSCPRG00005003141	SMARCE1 (ENSCPRG00005003138)	CCR7 (ENSCPRG00005003131)	ENSCPRG00005003130	TNS4 (ENSCPRG00005003064)
Aves	ANCESTRAL SPECIES	26	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A
African ostrich	MODERN SPECIES	1063	ENSSCUG00000013804	NKIRAS2 (ENSSCUG00000013806)	DNAJC7 (ENSSCUG00000013811)	CNP (ENSSCUG00000013817) #7	ODAD4 (ENSSCUG00000013820) #8	ACLY (ENSSCUG00000013827) #9	KLHL11 (ENSSCUG00000013838) #10	KLHL10 (ENSSCUG00000013839)	NT5C3B (ENSSCUG00000013841) #11	JUP (ENSSCUG00000013848) #14	KRT15 (ENSSCUG00000013863)	ENSSCUG00000013869	ENSSCUG00000013874 #22	ENSSCUG00000013880	ENSSCUG00000013882	ENSSCUG00000013888 #22	KRT23 (ENSSCUG00000013894) #26	KRT20 (ENSSCUG00000013897) #30	KRT12 (ENSSCUG00000013904) #37	KRT222 (ENSSCUG00000013911)	SMARCE1 (ENSSCUG00000013919)	CCR7 (ENSSCUG00000013931)	TNS4 (ENSSCUG00000013935)
Neognathae	ANCESTRAL SPECIES	23	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A
Galloanserae	DUPLICATION
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000183311 #24	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.c #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A
Anatidae	ANCESTRAL SPECIES	217															ENSGT00390000015789.c #18	ENSGT00950000182969.B.c.a.a.c.f.a.c #22
Pink-footed goose	DUPLICATION
Pink-footed goose	MODERN SPECIES	200	ODAD4 (ENSABRG00000009465) #8	ACLY (ENSABRG00000009396) #9	KLHL11 (ENSABRG00000009354) #10	KLHL10 (ENSABRG00000009322)	NT5C3B (ENSABRG00000009275) #11	FKBP10 (ENSABRG00000009239) #12	P3H4 (ENSABRG00000009188) #13	JUP (ENSABRG00000009164) #14	ENSABRG00000008659 #15	ENSABRG00000008630	ENSABRG00000008514	ENSABRG00000008472 #22	ENSABRG00000008452	ENSABRG00000008429	EIF1 (ENSABRG00000008424) #18	ENSABRG00000008408 #22
Pink-footed goose	MODERN SPECIES	435																ENSABRG00000016243 #22	ENSABRG00000016231	KRT15 (ENSABRG00000016225)	KRT23 (ENSABRG00000016223) #26	KRT20 (ENSABRG00000016220) #30	KRT12 (ENSABRG00000016217) #37	KRT222 (ENSABRG00000016210)	SMARCE1 (ENSABRG00000016203)	CCR7 (ENSABRG00000016200)	TNS4 (ENSABRG00000016196)	IGFBP4 (ENSABRG00000016191)	ENSABRG00000016182	TOP2A (ENSABRG00000016177)	GJD3 (ENSABRG00000016175)	RARA (ENSABRG00000016172)
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.c #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.d #22	ENSGT00950000182969.B.c.a.a.c.f.a.c #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Chicken	DUPLICATION
Chicken	MODERN SPECIES	19	KLHL10 (ENSGALG00010022800)	NT5C3B (ENSGALG00010022747) #11	FKBP10 (ENSGALG00010022656) #12	P3H4 (ENSGALG00010022608) #13	JUP (ENSGALG00010021261) #14	ENSGALG00010021221 #15	ENSGALG00010021209	EIF1 (ENSGALG00010022682) #18	KRT17 (ENSGALG00010022946)	KRT14 (ENSGALG00010026690)	ENSGALG00010023183	ENSGALG00010026731 #22	ENSGALG00010023089	ENSGALG00010026755	ENSGALG00010026719 #22	ENSGALG00010022953 #22	KRT24 (ENSGALG00010026706) #19	KRT13 (ENSGALG00010022872)	KRT23 (ENSGALG00010022817) #26	KRT40 (ENSGALG00010022786) #30	KRT12 (ENSGALG00010022765) #37	KRT222 (ENSGALG00010022725)	SMARCE1 (ENSGALG00010022547)	CCR7 (ENSGALG00010022529)	TNS4 (ENSGALG00010022522)	IGFBP4 (ENSGALG00010022511)	ENSGALG00010022502	TOP2A (ENSGALG00010022483)	RARA (ENSGALG00010024581)	CDC6 (ENSGALG00010024548)	WIPF2 (ENSGALG00010024541)
Chicken	MODERN SPECIES	19	KLHL11 (ENSGALG00010022866) #10	KLHL10 (ENSGALG00010022800)	NT5C3B (ENSGALG00010022747) #11	FKBP10 (ENSGALG00010022656) #12	P3H4 (ENSGALG00010022608) #13	JUP (ENSGALG00010021261) #14	ENSGALG00010021221 #15	ENSGALG00010021209	EIF1 (ENSGALG00010022682) #18	KRT17 (ENSGALG00010022946)	KRT14 (ENSGALG00010026690)	ENSGALG00010023183	ENSGALG00010026731 #22	ENSGALG00010023089	ENSGALG00010026755	ENSGALG00010026719 #22	ENSGALG00010022953 #22	KRT24 (ENSGALG00010026706) #19	KRT13 (ENSGALG00010022872)	KRT23 (ENSGALG00010022817) #26	KRT40 (ENSGALG00010022786) #30	KRT12 (ENSGALG00010022765) #37	KRT222 (ENSGALG00010022725)	SMARCE1 (ENSGALG00010022547)	CCR7 (ENSGALG00010022529)	TNS4 (ENSGALG00010022522)	IGFBP4 (ENSGALG00010022511)	ENSGALG00010022502	TOP2A (ENSGALG00010022483)	RARA (ENSGALG00010024581)	CDC6 (ENSGALG00010024548)
Turkey	MODERN SPECIES	21										ENSMGAG00000019618	ENSMGAG00000009314	ENSMGAG00000002851	TNS4 (ENSMGAG00000021108)	ENSMGAG00000002887	ENSMGAG00000002880	ENSMGAG00000022408 #22	KRT19 (ENSMGAG00000003084) #19	KRT23 (ENSMGAG00000003057) #26	KRT20 (ENSMGAG00000016371) #30	KRT12 (ENSMGAG00000017405) #37	KRT222 (ENSMGAG00000002908)	ENSMGAG00000002913	ENSMGAG00000020999	ENSMGAG00000016744 #22	ENSMGAG00000003113	ENSMGAG00000016911	ENSMGAG00000017065	ENSMGAG00000016949 #22	ENSMGAG00000016477 #18	ENSMGAG00000016610 #15	ENSMGAG00000016750
Galloanserae	ANCESTRAL SPECIES																	ENSGT00950000182969.B.c.a.a.c.f.a.d #22
Anatidae	ANCESTRAL SPECIES																	ENSGT00950000182969.B.c.a.a.c.f.a.d #22
Duck	MODERN SPECIES	537																ENSAPLG00000017536 #22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00950000182969.B.c.a.a.c.f.a.d #22
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.d #22	ENSGT00950000182969.B.c.a.a.c.f.a.c #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT00940000159997	ENSGT00530000063498.A
Turkey	MODERN SPECIES	21	TNS4 (ENSMGAG00000021108)	ENSMGAG00000002887	ENSMGAG00000002880	ENSMGAG00000022408 #22	KRT19 (ENSMGAG00000003084) #19	KRT23 (ENSMGAG00000003057) #26	KRT20 (ENSMGAG00000016371) #30	KRT12 (ENSMGAG00000017405) #37	KRT222 (ENSMGAG00000002908)	ENSMGAG00000002913	ENSMGAG00000020999	ENSMGAG00000016744 #22	ENSMGAG00000003113	ENSMGAG00000016911	ENSMGAG00000017065	ENSMGAG00000016949 #22	ENSMGAG00000016477 #18	ENSMGAG00000016610 #15	ENSMGAG00000016750	ENSMGAG00000010064 #14	ENSMGAG00000022609 #13	ENSMGAG00000006992 #12	NT5C3B (ENSMGAG00000007006) #11	ENSMGAG00000003146 #10	ENSMGAG00000003122	ACLY (ENSMGAG00000003163) #9	ODAD4 (ENSMGAG00000003248) #8	ENSMGAG00000003293	CNP (ENSMGAG00000003273) #7	ENSMGAG00000017173	NKIRAS2 (ENSMGAG00000003260)
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A
Passeriformes	ANCESTRAL SPECIES	29	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A
Great tit	MODERN SPECIES	20	ODAD4 (ENSPMJG00000001062) #8	ACLY (ENSPMJG00000001014) #9	KLHL11 (ENSPMJG00000001012) #10	KLHL10 (ENSPMJG00000001010)	NT5C3B (ENSPMJG00000001008) #11	FKBP10 (ENSPMJG00000001007) #12	P3H4 (ENSPMJG00000001004) #13	JUP (ENSPMJG00000000991) #14	ENSPMJG00000000941	EIF1 (ENSPMJG00000000936) ##18	ENSPMJG00000000917	KRT13 (ENSPMJG00000000913) #24	ENSPMJG00000000768 #22	ENSPMJG00000000388	ENSPMJG00000000358	ENSPMJG00000000335 #22	KRT19 (ENSPMJG00000000323) #19	KRT15 (ENSPMJG00000000316)	KRT23 (ENSPMJG00000000306) #26	KRT20 (ENSPMJG00000000284) #30	KRT12 (ENSPMJG00000000279) #37	KRT222 (ENSPMJG00000000276)	SMARCE1 (ENSPMJG00000000262)	CCR7 (ENSPMJG00000000255)	TNS4 (ENSPMJG00000000210)	IGFBP4 (ENSPMJG00000000187)	ENSPMJG00000000173	TOP2A (ENSPMJG00000000127)	GJD3 (ENSPMJG00000000120)	RARA (ENSPMJG00000000114)	CDC6 (ENSPMJG00000000063)
Passeriformes_d	DUPLICATION
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00950000182969.B.c.a.a.c.f.a.e #22
Flycatcher	MODERN SPECIES	19	ENSFALG00000023489	NKIRAS2 (ENSFALG00000023807)	DNAJC7 (ENSFALG00000000639)	CNP (ENSFALG00000000635) #7	ODAD4 (ENSFALG00000000633) #8	ACLY (ENSFALG00000000631) #9	KLHL11 (ENSFALG00000000630) #10	KLHL10 (ENSFALG00000000629)	NT5C3B (ENSFALG00000000628) #11	FKBP10 (ENSFALG00000000626) #12	P3H4 (ENSFALG00000000622) #13	JUP (ENSFALG00000000297) #14	ENSFALG00000000310 #15	ENSFALG00000000312	EIF1 (ENSFALG00000000314) #18	ENSFALG00000026044 #22	ENSFALG00000000318	ENSFALG00000023326	ENSFALG00000027809 #24	ENSFALG00000000327 #22	ENSFALG00000000331 #22	ENSFALG00000000335 #22	KRT19 (ENSFALG00000000341) #19	KRT15 (ENSFALG00000000346)	KRT23 (ENSFALG00000000349) #26	KRT20 (ENSFALG00000000350) #30	KRT12 (ENSFALG00000000351) #37	KRT222 (ENSFALG00000000359)	SMARCE1 (ENSFALG00000000362)	CCR7 (ENSFALG00000000373)	TNS4 (ENSFALG00000000379)
Passeriformes_d	ANCESTRAL SPECIES	25	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A
Passeriformes_g	ANCESTRAL SPECIES	26	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A
Passeroidea	ANCESTRAL SPECIES	32	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A
Common canary	DUPLICATION
Common canary	MODERN SPECIES	42	KLHL10 (ENSSCAG00000007488)	NT5C3B (ENSSCAG00000007493) #11	FKBP10 (ENSSCAG00000007514) #12	P3H4 (ENSSCAG00000007526) #13	JUP (ENSSCAG00000007549) #14	ENSSCAG00000007584 #15	ENSSCAG00000007653	EIF1 (ENSSCAG00000007656) #18	ENSSCAG00000007660	ENSSCAG00000007664	ENSSCAG00000007670 #22	ENSSCAG00000007673 #22	ENSSCAG00000007681	ENSSCAG00000007686	ENSSCAG00000007692 #22	ENSSCAG00000007701 #22	KRT19 (ENSSCAG00000007706) #19	KRT15 (ENSSCAG00000007710)	KRT23 (ENSSCAG00000007713) #26	KRT20 (ENSSCAG00000007719) #30	KRT12 (ENSSCAG00000007734) #37	KRT222 (ENSSCAG00000007752)	SMARCE1 (ENSSCAG00000007757)	CCR7 (ENSSCAG00000007768)	TNS4 (ENSSCAG00000007773)	IGFBP4 (ENSSCAG00000007784)	ENSSCAG00000007790	TOP2A (ENSSCAG00000007794)	RARA (ENSSCAG00000007824)	GJD3 (ENSSCAG00000007939)	CDC6 (ENSSCAG00000007941)
Common canary	MODERN SPECIES	42	KLHL11 (ENSSCAG00000007483) #10	KLHL10 (ENSSCAG00000007488)	NT5C3B (ENSSCAG00000007493) #11	FKBP10 (ENSSCAG00000007514) #12	P3H4 (ENSSCAG00000007526) #13	JUP (ENSSCAG00000007549) #14	ENSSCAG00000007584 #15	ENSSCAG00000007653	EIF1 (ENSSCAG00000007656) #18	ENSSCAG00000007660	ENSSCAG00000007664	ENSSCAG00000007670 #22	ENSSCAG00000007673 #22	ENSSCAG00000007681	ENSSCAG00000007686	ENSSCAG00000007692 #22	ENSSCAG00000007701 #22	KRT19 (ENSSCAG00000007706) #19	KRT15 (ENSSCAG00000007710)	KRT23 (ENSSCAG00000007713) #26	KRT20 (ENSSCAG00000007719) #30	KRT12 (ENSSCAG00000007734) #37	KRT222 (ENSSCAG00000007752)	SMARCE1 (ENSSCAG00000007757)	CCR7 (ENSSCAG00000007768)	TNS4 (ENSSCAG00000007773)	IGFBP4 (ENSSCAG00000007784)	ENSSCAG00000007790	TOP2A (ENSSCAG00000007794)	RARA (ENSSCAG00000007824)	GJD3 (ENSSCAG00000007939)
Zebra finch	MODERN SPECIES	20	ACLY (ENSTGUG00000002447) #9	KLHL11 (ENSTGUG00000027938) #10	KLHL10 (ENSTGUG00000013823)	NT5C3B (ENSTGUG00000013789) #11	FKBP10 (ENSTGUG00000002431) #12	P3H4 (ENSTGUG00000002427) #13	JUP (ENSTGUG00000002410) #14	ENSTGUG00000027542 #15	ENSTGUG00000027189	EIF1 (ENSTGUG00000026666) #18	ENSTGUG00000024454	KRT13 (ENSTGUG00000016947) #24	ENSTGUG00000002392 #22	ENSTGUG00000002388 #22	ENSTGUG00000019538	ENSTGUG00000016530 #22	KRT19 (ENSTGUG00000002393) #19	KRT23 (ENSTGUG00000018328) #26	KRT20 (ENSTGUG00000026084) #30	KRT12 (ENSTGUG00000002372) #37	KRT222 (ENSTGUG00000002371)	SMARCE1 (ENSTGUG00000002357)	CCR7 (ENSTGUG00000002356)	TNS4 (ENSTGUG00000021496)	IGFBP4 (ENSTGUG00000002346)	TOP2A (ENSTGUG00000002312)	ENSTGUG00000021616	GJD3 (ENSTGUG00000002311)	RARA (ENSTGUG00000022927)	CDC6 (ENSTGUG00000002293)	ENSTGUG00000020027
Medium ground finch	MODERN SPECIES	356								ENSGFOG00000006880	ENSGFOG00000006883	ENSGFOG00000006890	ENSGFOG00000006896 #22	ENSGFOG00000006908	ENSGFOG00000006918	ENSGFOG00000006927	ENSGFOG00000006944	ENSGFOG00000006956 #22	KRT19 (ENSGFOG00000007054) #19	KRT15 (ENSGFOG00000007061)	KRT23 (ENSGFOG00000007070) #26	KRT20 (ENSGFOG00000007085) #30	KRT12 (ENSGFOG00000007092) #37	ENSGFOG00000007105	KRT222 (ENSGFOG00000007111)	SMARCE1 (ENSGFOG00000007119)	CCR7 (ENSGFOG00000007134)	TNS4 (ENSGFOG00000007151)	IGFBP4 (ENSGFOG00000007229)	TOP2A (ENSGFOG00000007236)	RARA (ENSGFOG00000007269)
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES	19	KLHL11 (ENSFALG00000000630) #10	KLHL10 (ENSFALG00000000629)	NT5C3B (ENSFALG00000000628) #11	FKBP10 (ENSFALG00000000626) #12	P3H4 (ENSFALG00000000622) #13	JUP (ENSFALG00000000297) #14	ENSFALG00000000310 #15	ENSFALG00000000312	EIF1 (ENSFALG00000000314) #18	ENSFALG00000026044 #22	ENSFALG00000000318	ENSFALG00000023326	ENSFALG00000027809 #24	ENSFALG00000000327 #22	ENSFALG00000000331 #22	ENSFALG00000000335 #22	KRT19 (ENSFALG00000000341) #19	KRT15 (ENSFALG00000000346)	KRT23 (ENSFALG00000000349) #26	KRT20 (ENSFALG00000000350) #30	KRT12 (ENSFALG00000000351) #37	KRT222 (ENSFALG00000000359)	SMARCE1 (ENSFALG00000000362)	CCR7 (ENSFALG00000000373)	TNS4 (ENSFALG00000000379)	IGFBP4 (ENSFALG00000023499)	ENSFALG00000026880	TOP2A (ENSFALG00000000389)	RARA (ENSFALG00000000392)	CDC6 (ENSFALG00000000393)	ENSFALG00000023333
Flycatcher	MODERN SPECIES	19	ACLY (ENSFALG00000000631) #9	KLHL11 (ENSFALG00000000630) #10	KLHL10 (ENSFALG00000000629)	NT5C3B (ENSFALG00000000628) #11	FKBP10 (ENSFALG00000000626) #12	P3H4 (ENSFALG00000000622) #13	JUP (ENSFALG00000000297) #14	ENSFALG00000000310 #15	ENSFALG00000000312	EIF1 (ENSFALG00000000314) #18	ENSFALG00000026044 #22	ENSFALG00000000318	ENSFALG00000023326	ENSFALG00000027809 #24	ENSFALG00000000327 #22	ENSFALG00000000331 #22	ENSFALG00000000335 #22	KRT19 (ENSFALG00000000341) #19	KRT15 (ENSFALG00000000346)	KRT23 (ENSFALG00000000349) #26	KRT20 (ENSFALG00000000350) #30	KRT12 (ENSFALG00000000351) #37	KRT222 (ENSFALG00000000359)	SMARCE1 (ENSFALG00000000362)	CCR7 (ENSFALG00000000373)	TNS4 (ENSFALG00000000379)	IGFBP4 (ENSFALG00000023499)	ENSFALG00000026880	TOP2A (ENSFALG00000000389)	RARA (ENSFALG00000000392)	CDC6 (ENSFALG00000000393)
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000163247.t	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	12	ENSSHBG00005017600	ENSSHBG00005017602	ITGA3 (ENSSHBG00005017621)	PDK2 (ENSSHBG00005017666)	ENSSHBG00005017676	EIF1 (ENSSHBG00005017683) #18	ENSSHBG00005017694	ENSSHBG00005017704	ENSSHBG00005017711	ENSSHBG00005017719 #24	ENSSHBG00005017728 #22	ENSSHBG00005017736	ENSSHBG00005017741	ENSSHBG00005017742	ENSSHBG00005017746 #22	ENSSHBG00005017756 #22	KRT15 (ENSSHBG00005017768)	KRT23 (ENSSHBG00005017777) #26	KRT20 (ENSSHBG00005017782) #30	KRT12 (ENSSHBG00005017796) #37	KRT222 (ENSSHBG00005017817)	SMARCE1 (ENSSHBG00005017823)	CCR7 (ENSSHBG00005017832)	ENSSHBG00005017836	TNS4 (ENSSHBG00005017847)	IGFBP4 (ENSSHBG00005017853)	TOP2A (ENSSHBG00005018009)	RARA (ENSSHBG00005020013)	CDC6 (ENSSHBG00005000732)	WIPF2 (ENSSHBG00005000739)	CASC3 (ENSSHBG00005000761)
Kakapo	MODERN SPECIES	12	ENSSHBG00005017592	ENSSHBG00005017600	ENSSHBG00005017602	ITGA3 (ENSSHBG00005017621)	PDK2 (ENSSHBG00005017666)	ENSSHBG00005017676	EIF1 (ENSSHBG00005017683) #18	ENSSHBG00005017694	ENSSHBG00005017704	ENSSHBG00005017711	ENSSHBG00005017719 #24	ENSSHBG00005017728 #22	ENSSHBG00005017736	ENSSHBG00005017741	ENSSHBG00005017742	ENSSHBG00005017746 #22	ENSSHBG00005017756 #22	KRT15 (ENSSHBG00005017768)	KRT23 (ENSSHBG00005017777) #26	KRT20 (ENSSHBG00005017782) #30	KRT12 (ENSSHBG00005017796) #37	KRT222 (ENSSHBG00005017817)	SMARCE1 (ENSSHBG00005017823)	CCR7 (ENSSHBG00005017832)	ENSSHBG00005017836	TNS4 (ENSSHBG00005017847)	IGFBP4 (ENSSHBG00005017853)	TOP2A (ENSSHBG00005018009)	RARA (ENSSHBG00005020013)	CDC6 (ENSSHBG00005000732)	WIPF2 (ENSSHBG00005000739)
Golden eagle	DUPLICATION
Golden eagle	MODERN SPECIES	24	NT5C3B (ENSACCG00020002366) #11	FKBP10 (ENSACCG00020002383) #12	P3H4 (ENSACCG00020002413) #13	JUP (ENSACCG00020002451) #14	ENSACCG00020002472 #15	ENSACCG00020002490	ENSACCG00020002498	EIF1 (ENSACCG00020002514) #18	ENSACCG00020002559	ENSACCG00020002592	ENSACCG00020002614	ENSACCG00020002631 #22	ENSACCG00020002646 #25	ENSACCG00020002661	ENSACCG00020002680	ENSACCG00020002765 #22	ENSACCG00020002840 #22	KRT19 (ENSACCG00020002860) #19	KRT15 (ENSACCG00020002881)	KRT23 (ENSACCG00020002903) #26	KRT20 (ENSACCG00020002922) #30	KRT12 (ENSACCG00020002943) #37	KRT222 (ENSACCG00020002958)	SMARCE1 (ENSACCG00020003022)	CCR7 (ENSACCG00020003054)	TNS4 (ENSACCG00020003073)	IGFBP4 (ENSACCG00020003106)	ENSACCG00020003118	TOP2A (ENSACCG00020003154)	RARA (ENSACCG00020003210)	CDC6 (ENSACCG00020003236)
Golden eagle	MODERN SPECIES	24	FKBP10 (ENSACCG00020002383) #12	P3H4 (ENSACCG00020002413) #13	JUP (ENSACCG00020002451) #14	ENSACCG00020002472 #15	ENSACCG00020002490	ENSACCG00020002498	EIF1 (ENSACCG00020002514) #18	ENSACCG00020002559	ENSACCG00020002592	ENSACCG00020002614	ENSACCG00020002631 #22	ENSACCG00020002646 #25	ENSACCG00020002661	ENSACCG00020002680	ENSACCG00020002765 #22	ENSACCG00020002840 #22	KRT19 (ENSACCG00020002860) #19	KRT15 (ENSACCG00020002881)	KRT23 (ENSACCG00020002903) #26	KRT20 (ENSACCG00020002922) #30	KRT12 (ENSACCG00020002943) #37	KRT222 (ENSACCG00020002958)	SMARCE1 (ENSACCG00020003022)	CCR7 (ENSACCG00020003054)	TNS4 (ENSACCG00020003073)	IGFBP4 (ENSACCG00020003106)	ENSACCG00020003118	TOP2A (ENSACCG00020003154)	RARA (ENSACCG00020003210)	CDC6 (ENSACCG00020003236)	ENSACCG00020003260
Sauria	ANCESTRAL SPECIES	26	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00390000015789.d ##18	ENSGT00940000163247	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000160849.p.a	ENSGT00940000161783.a	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000165938
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00390000015789.d ##18	ENSGT00940000163247	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000160849.p.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000165938
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247.w	ENSGT00940000163247.v	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.d #37	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.w	ENSGT00940000163247.v	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.d #37	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	15	ODAD4 (ENSGEVG00005010597) #8	ACLY (ENSGEVG00005010903) #9	KLHL11 (ENSGEVG00005010959) #10	KLHL10 (ENSGEVG00005011024)	NT5C3B (ENSGEVG00005011091) #11	FKBP10 (ENSGEVG00005011165) #12	P3H4 (ENSGEVG00005011368) #13	JUP (ENSGEVG00005011560) #14	ENSGEVG00005011615 #15	ENSGEVG00005011873	EIF1 (ENSGEVG00005011907) #18	ENSGEVG00005011929 #37	ENSGEVG00005012012	ENSGEVG00005012106	ENSGEVG00005012196 #22	ENSGEVG00005012379 #22	ENSGEVG00005012618	ENSGEVG00005012756	KRT15 (ENSGEVG00005012829)	KRT23 (ENSGEVG00005012916) #26	ENSGEVG00005013074 #28	KRT12 (ENSGEVG00005013775) #37	SMARCE1 (ENSGEVG00005014242)	CCR7 (ENSGEVG00005014270)	TNS4 (ENSGEVG00005014290)	IGFBP4 (ENSGEVG00005014377)	ENSGEVG00005014498	TOP2A (ENSGEVG00005015250)	GJD3 (ENSGEVG00005018837)	RARA (ENSGEVG00005018860)	CDC6 (ENSGEVG00005018895)
Goode s thornscrub tortoise	MODERN SPECIES	15	CNP (ENSGEVG00005010526) #7	ODAD4 (ENSGEVG00005010597) #8	ACLY (ENSGEVG00005010903) #9	KLHL11 (ENSGEVG00005010959) #10	KLHL10 (ENSGEVG00005011024)	NT5C3B (ENSGEVG00005011091) #11	FKBP10 (ENSGEVG00005011165) #12	P3H4 (ENSGEVG00005011368) #13	JUP (ENSGEVG00005011560) #14	ENSGEVG00005011615 #15	ENSGEVG00005011873	EIF1 (ENSGEVG00005011907) #18	ENSGEVG00005011929 #37	ENSGEVG00005012012	ENSGEVG00005012106	ENSGEVG00005012196 #22	ENSGEVG00005012379 #22	ENSGEVG00005012618	ENSGEVG00005012756	KRT15 (ENSGEVG00005012829)	KRT23 (ENSGEVG00005012916) #26	ENSGEVG00005013074 #28	KRT12 (ENSGEVG00005013775) #37	SMARCE1 (ENSGEVG00005014242)	CCR7 (ENSGEVG00005014270)	TNS4 (ENSGEVG00005014290)	IGFBP4 (ENSGEVG00005014377)	ENSGEVG00005014498	TOP2A (ENSGEVG00005015250)	GJD3 (ENSGEVG00005018837)	RARA (ENSGEVG00005018860)
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	1384	ODAD4 (ENSCABG00000013530) #8	ACLY (ENSCABG00000011752) #9	KLHL11 (ENSCABG00000011694) #10	KLHL10 (ENSCABG00000011693)	NT5C3B (ENSCABG00000011692) #11	FKBP10 (ENSCABG00000011687) #12	P3H4 (ENSCABG00000011671) #13	JUP (ENSCABG00000011670) #14	ENSCABG00000011669 #15	ENSCABG00000011667	ENSCABG00000011664	ENSCABG00000011663	ENSCABG00000011659	ENSCABG00000011657	ENSCABG00000011651 #22	ENSCABG00000011642 #22	ENSCABG00000011634	ENSCABG00000011629	ENSCABG00000011624	KRT23 (ENSCABG00000011620) #26	ENSCABG00000011586 #28	KRT12 (ENSCABG00000011355) #37	KRT24 (ENSCABG00000011350)	KRT222 (ENSCABG00000011348)	SMARCE1 (ENSCABG00000011346)	CCR7 (ENSCABG00000011344)	ENSCABG00000011342	TNS4 (ENSCABG00000011249)	IGFBP4 (ENSCABG00000011238)	ENSCABG00000011235	TOP2A (ENSCABG00000011214)
Abingdon island giant tortoise	MODERN SPECIES	1384	CNP (ENSCABG00000013533) #7	ODAD4 (ENSCABG00000013530) #8	ACLY (ENSCABG00000011752) #9	KLHL11 (ENSCABG00000011694) #10	KLHL10 (ENSCABG00000011693)	NT5C3B (ENSCABG00000011692) #11	FKBP10 (ENSCABG00000011687) #12	P3H4 (ENSCABG00000011671) #13	JUP (ENSCABG00000011670) #14	ENSCABG00000011669 #15	ENSCABG00000011667	ENSCABG00000011664	ENSCABG00000011663	ENSCABG00000011659	ENSCABG00000011657	ENSCABG00000011651 #22	ENSCABG00000011642 #22	ENSCABG00000011634	ENSCABG00000011629	ENSCABG00000011624	KRT23 (ENSCABG00000011620) #26	ENSCABG00000011586 #28	KRT12 (ENSCABG00000011355) #37	KRT24 (ENSCABG00000011350)	KRT222 (ENSCABG00000011348)	SMARCE1 (ENSCABG00000011346)	CCR7 (ENSCABG00000011344)	ENSCABG00000011342	TNS4 (ENSCABG00000011249)	IGFBP4 (ENSCABG00000011238)	ENSCABG00000011235
Emydidae	ANCESTRAL SPECIES	26	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247.w	ENSGT00940000163247.v	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.d #37	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997
painted turtle	MODERN SPECIES	2394	DNAJC7 (ENSCPBG00000006760)	CNP (ENSCPBG00000006750) #7	ODAD4 (ENSCPBG00000006714) #8	ACLY (ENSCPBG00000006669) #9	KLHL11 (ENSCPBG00000006632) #10	KLHL10 (ENSCPBG00000006629)	NT5C3B (ENSCPBG00000006621) #11	FKBP10 (ENSCPBG00000006612) #12	P3H4 (ENSCPBG00000006605) #13	ENSCPBG00000006602	JUP (ENSCPBG00000006592) #14	ENSCPBG00000006587 #15	ENSCPBG00000006570	ENSCPBG00000006566	ENSCPBG00000006557	ENSCPBG00000006527 #22	ENSCPBG00000006507	ENSCPBG00000006500	KRT15 (ENSCPBG00000006494)	KRT23 (ENSCPBG00000006488) #26	ENSCPBG00000005869 #28	KRT12 (ENSCPBG00000005794) #37	KRT24 (ENSCPBG00000005755)	KRT222 (ENSCPBG00000005743)	SMARCE1 (ENSCPBG00000005734)	CCR7 (ENSCPBG00000005728)	TNS4 (ENSCPBG00000005006)	IGFBP4 (ENSCPBG00000004980)	TOP2A (ENSCPBG00000004966)	GJD3 (ENSCPBG00000004957)	ENSCPBG00000004951
Chinese turtle	MODERN SPECIES	401								ENSPSIG00000002752 #11	FKBP10 (ENSPSIG00000002740) #12	P3H4 (ENSPSIG00000002702) #13	JUP (ENSPSIG00000002691) #14	ENSPSIG00000002686	EIF1 (ENSPSIG00000002672) #18	ENSPSIG00000002669 #27	ENSPSIG00000002668	ENSPSIG00000002643 #22	ENSPSIG00000002638	KRT15 (ENSPSIG00000002628)	KRT23 (ENSPSIG00000002604) #26	ENSPSIG00000002600 #30	KRT19 (ENSPSIG00000002599) #19	ENSPSIG00000002598 #37	ENSPSIG00000002065	ENSPSIG00000002596 #37	ENSPSIG00000002595	KRT222 (ENSPSIG00000002590)	SMARCE1 (ENSPSIG00000002527)	CCR7 (ENSPSIG00000002515)	TNS4 (ENSPSIG00000002504)	IGFBP4 (ENSPSIG00000002490)	ENSPSIG00000002457
Archosauria	ANCESTRAL SPECIES	20	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000160849.p.a	ENSGT00940000161783.b	ENSGT00960000190892	ENSGT00940000159655	ENSGT00390000003628.b
Aves	ANCESTRAL SPECIES	140															ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000161311.c #25
Neognathae	ANCESTRAL SPECIES	23	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000163247.t	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Kakapo	MODERN SPECIES	12	DAD1 (ENSSHBG00005017543)	ENSSHBG00005017555	ENSSHBG00005017573	SDR39U1 (ENSSHBG00005017585)	ENSSHBG00005017592	ENSSHBG00005017600	ENSSHBG00005017602	ITGA3 (ENSSHBG00005017621)	PDK2 (ENSSHBG00005017666)	ENSSHBG00005017676	EIF1 (ENSSHBG00005017683) #18	ENSSHBG00005017694	ENSSHBG00005017704	ENSSHBG00005017711	ENSSHBG00005017719 #24	ENSSHBG00005017728 #22	ENSSHBG00005017736	ENSSHBG00005017741	ENSSHBG00005017742	ENSSHBG00005017746 #22	ENSSHBG00005017756 #22	KRT15 (ENSSHBG00005017768)	KRT23 (ENSSHBG00005017777) #26	KRT20 (ENSSHBG00005017782) #30	KRT12 (ENSSHBG00005017796) #37	KRT222 (ENSSHBG00005017817)	SMARCE1 (ENSSHBG00005017823)	CCR7 (ENSSHBG00005017832)	ENSSHBG00005017836	TNS4 (ENSSHBG00005017847)	IGFBP4 (ENSSHBG00005017853)
Golden eagle	MODERN SPECIES	24	ODAD4 (ENSACCG00020002212) #8	ACLY (ENSACCG00020002290) #9	KLHL11 (ENSACCG00020002337) #10	KLHL10 (ENSACCG00020002349)	NT5C3B (ENSACCG00020002366) #11	FKBP10 (ENSACCG00020002383) #12	P3H4 (ENSACCG00020002413) #13	JUP (ENSACCG00020002451) #14	ENSACCG00020002472 #15	ENSACCG00020002490	ENSACCG00020002498	EIF1 (ENSACCG00020002514) #18	ENSACCG00020002559	ENSACCG00020002592	ENSACCG00020002614	ENSACCG00020002631 #22	ENSACCG00020002646 #25	ENSACCG00020002661	ENSACCG00020002680	ENSACCG00020002765 #22	ENSACCG00020002840 #22	KRT19 (ENSACCG00020002860) #19	KRT15 (ENSACCG00020002881)	KRT23 (ENSACCG00020002903) #26	KRT20 (ENSACCG00020002922) #30	KRT12 (ENSACCG00020002943) #37	KRT222 (ENSACCG00020002958)	SMARCE1 (ENSACCG00020003022)	CCR7 (ENSACCG00020003054)	TNS4 (ENSACCG00020003073)	IGFBP4 (ENSACCG00020003106)
Passeriformes	ANCESTRAL SPECIES	29	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Great tit	MODERN SPECIES	20	NKIRAS2 (ENSPMJG00000001076)	DNAJC7 (ENSPMJG00000001071)	CNP (ENSPMJG00000001067) #7	ODAD4 (ENSPMJG00000001062) #8	ACLY (ENSPMJG00000001014) #9	KLHL11 (ENSPMJG00000001012) #10	KLHL10 (ENSPMJG00000001010)	NT5C3B (ENSPMJG00000001008) #11	FKBP10 (ENSPMJG00000001007) #12	P3H4 (ENSPMJG00000001004) #13	JUP (ENSPMJG00000000991) #14	ENSPMJG00000000941	EIF1 (ENSPMJG00000000936) ##18	ENSPMJG00000000917	KRT13 (ENSPMJG00000000913) #24	ENSPMJG00000000768 #22	ENSPMJG00000000388	ENSPMJG00000000358	ENSPMJG00000000335 #22	KRT19 (ENSPMJG00000000323) #19	KRT15 (ENSPMJG00000000316)	KRT23 (ENSPMJG00000000306) #26	KRT20 (ENSPMJG00000000284) #30	KRT12 (ENSPMJG00000000279) #37	KRT222 (ENSPMJG00000000276)	SMARCE1 (ENSPMJG00000000262)	CCR7 (ENSPMJG00000000255)	TNS4 (ENSPMJG00000000210)	IGFBP4 (ENSPMJG00000000187)	ENSPMJG00000000173	TOP2A (ENSPMJG00000000127)
Passeriformes_d	ANCESTRAL SPECIES	25	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Flycatcher	MODERN SPECIES	19	ODAD4 (ENSFALG00000000633) #8	ACLY (ENSFALG00000000631) #9	KLHL11 (ENSFALG00000000630) #10	KLHL10 (ENSFALG00000000629)	NT5C3B (ENSFALG00000000628) #11	FKBP10 (ENSFALG00000000626) #12	P3H4 (ENSFALG00000000622) #13	JUP (ENSFALG00000000297) #14	ENSFALG00000000310 #15	ENSFALG00000000312	EIF1 (ENSFALG00000000314) #18	ENSFALG00000026044 #22	ENSFALG00000000318	ENSFALG00000023326	ENSFALG00000027809 #24	ENSFALG00000000327 #22	ENSFALG00000000331 #22	ENSFALG00000000335 #22	KRT19 (ENSFALG00000000341) #19	KRT15 (ENSFALG00000000346)	KRT23 (ENSFALG00000000349) #26	KRT20 (ENSFALG00000000350) #30	KRT12 (ENSFALG00000000351) #37	KRT222 (ENSFALG00000000359)	SMARCE1 (ENSFALG00000000362)	CCR7 (ENSFALG00000000373)	TNS4 (ENSFALG00000000379)	IGFBP4 (ENSFALG00000023499)	ENSFALG00000026880	TOP2A (ENSFALG00000000389)	RARA (ENSFALG00000000392)
Passeriformes_g	ANCESTRAL SPECIES	26	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000160849.o	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Medium ground finch	MODERN SPECIES	356													ENSGFOG00000006880	ENSGFOG00000006883	ENSGFOG00000006890	ENSGFOG00000006896 #22	ENSGFOG00000006908	ENSGFOG00000006918	ENSGFOG00000006927	ENSGFOG00000006944	ENSGFOG00000006956 #22	KRT19 (ENSGFOG00000007054) #19	KRT15 (ENSGFOG00000007061)	KRT23 (ENSGFOG00000007070) #26	KRT20 (ENSGFOG00000007085) #30	KRT12 (ENSGFOG00000007092) #37	ENSGFOG00000007105	KRT222 (ENSGFOG00000007111)	SMARCE1 (ENSGFOG00000007119)	CCR7 (ENSGFOG00000007134)	TNS4 (ENSGFOG00000007151)
Passeroidea	ANCESTRAL SPECIES	32	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.f #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	20	DNAJC7 (ENSTGUG00000002483)	CNP (ENSTGUG00000002478) #7	ODAD4 (ENSTGUG00000002476) #8	ACLY (ENSTGUG00000002447) #9	KLHL11 (ENSTGUG00000027938) #10	KLHL10 (ENSTGUG00000013823)	NT5C3B (ENSTGUG00000013789) #11	FKBP10 (ENSTGUG00000002431) #12	P3H4 (ENSTGUG00000002427) #13	JUP (ENSTGUG00000002410) #14	ENSTGUG00000027542 #15	ENSTGUG00000027189	EIF1 (ENSTGUG00000026666) #18	ENSTGUG00000024454	KRT13 (ENSTGUG00000016947) #24	ENSTGUG00000002392 #22	ENSTGUG00000002388 #22	ENSTGUG00000019538	ENSTGUG00000016530 #22	KRT19 (ENSTGUG00000002393) #19	KRT23 (ENSTGUG00000018328) #26	KRT20 (ENSTGUG00000026084) #30	KRT12 (ENSTGUG00000002372) #37	KRT222 (ENSTGUG00000002371)	SMARCE1 (ENSTGUG00000002357)	CCR7 (ENSTGUG00000002356)	TNS4 (ENSTGUG00000021496)	IGFBP4 (ENSTGUG00000002346)	TOP2A (ENSTGUG00000002312)	ENSTGUG00000021616	GJD3 (ENSTGUG00000002311)
Zebra finch	MODERN SPECIES	20	CNP (ENSTGUG00000002478) #7	ODAD4 (ENSTGUG00000002476) #8	ACLY (ENSTGUG00000002447) #9	KLHL11 (ENSTGUG00000027938) #10	KLHL10 (ENSTGUG00000013823)	NT5C3B (ENSTGUG00000013789) #11	FKBP10 (ENSTGUG00000002431) #12	P3H4 (ENSTGUG00000002427) #13	JUP (ENSTGUG00000002410) #14	ENSTGUG00000027542 #15	ENSTGUG00000027189	EIF1 (ENSTGUG00000026666) #18	ENSTGUG00000024454	KRT13 (ENSTGUG00000016947) #24	ENSTGUG00000002392 #22	ENSTGUG00000002388 #22	ENSTGUG00000019538	ENSTGUG00000016530 #22	KRT19 (ENSTGUG00000002393) #19	KRT23 (ENSTGUG00000018328) #26	KRT20 (ENSTGUG00000026084) #30	KRT12 (ENSTGUG00000002372) #37	KRT222 (ENSTGUG00000002371)	SMARCE1 (ENSTGUG00000002357)	CCR7 (ENSTGUG00000002356)	TNS4 (ENSTGUG00000021496)	IGFBP4 (ENSTGUG00000002346)	TOP2A (ENSTGUG00000002312)	ENSTGUG00000021616	GJD3 (ENSTGUG00000002311)	RARA (ENSTGUG00000022927)
Common canary	DUPLICATION
Common canary	MODERN SPECIES	42	DNAJC7 (ENSSCAG00000007248)	CNP (ENSSCAG00000007417) #7	ODAD4 (ENSSCAG00000007436) #8	ACLY (ENSSCAG00000007470) #9	KLHL11 (ENSSCAG00000007483) #10	KLHL10 (ENSSCAG00000007488)	NT5C3B (ENSSCAG00000007493) #11	FKBP10 (ENSSCAG00000007514) #12	P3H4 (ENSSCAG00000007526) #13	JUP (ENSSCAG00000007549) #14	ENSSCAG00000007584 #15	ENSSCAG00000007653	EIF1 (ENSSCAG00000007656) #18	ENSSCAG00000007660	ENSSCAG00000007664	ENSSCAG00000007670 #22	ENSSCAG00000007673 #22	ENSSCAG00000007681	ENSSCAG00000007686	ENSSCAG00000007692 #22	ENSSCAG00000007701 #22	KRT19 (ENSSCAG00000007706) #19	KRT15 (ENSSCAG00000007710)	KRT23 (ENSSCAG00000007713) #26	KRT20 (ENSSCAG00000007719) #30	KRT12 (ENSSCAG00000007734) #37	KRT222 (ENSSCAG00000007752)	SMARCE1 (ENSSCAG00000007757)	CCR7 (ENSSCAG00000007768)	TNS4 (ENSSCAG00000007773)	IGFBP4 (ENSSCAG00000007784)
Common canary	MODERN SPECIES	42	CNP (ENSSCAG00000007417) #7	ODAD4 (ENSSCAG00000007436) #8	ACLY (ENSSCAG00000007470) #9	KLHL11 (ENSSCAG00000007483) #10	KLHL10 (ENSSCAG00000007488)	NT5C3B (ENSSCAG00000007493) #11	FKBP10 (ENSSCAG00000007514) #12	P3H4 (ENSSCAG00000007526) #13	JUP (ENSSCAG00000007549) #14	ENSSCAG00000007584 #15	ENSSCAG00000007653	EIF1 (ENSSCAG00000007656) #18	ENSSCAG00000007660	ENSSCAG00000007664	ENSSCAG00000007670 #22	ENSSCAG00000007673 #22	ENSSCAG00000007681	ENSSCAG00000007686	ENSSCAG00000007692 #22	ENSSCAG00000007701 #22	KRT19 (ENSSCAG00000007706) #19	KRT15 (ENSSCAG00000007710)	KRT23 (ENSSCAG00000007713) #26	KRT20 (ENSSCAG00000007719) #30	KRT12 (ENSSCAG00000007734) #37	KRT222 (ENSSCAG00000007752)	SMARCE1 (ENSSCAG00000007757)	CCR7 (ENSSCAG00000007768)	TNS4 (ENSSCAG00000007773)	IGFBP4 (ENSSCAG00000007784)	ENSSCAG00000007790
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000183311 #24	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.c #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00940000174634	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.c #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539
Japanese quail	MODERN SPECIES	19	DNAJC7 (ENSCJPG00005004798)	CNP (ENSCJPG00005004793) #7	ENSCJPG00005004787	ACLY (ENSCJPG00005004772) #9	KLHL11 (ENSCJPG00005004771) #10	KLHL10 (ENSCJPG00005004770)	NT5C3B (ENSCJPG00005004769) #11	FKBP10 (ENSCJPG00005004766) #12	P3H4 (ENSCJPG00005004763) #13	JUP (ENSCJPG00005004757) #14	ENSCJPG00005004756	ENSCJPG00005004601 #15	EIF1 (ENSCJPG00005004600) #18	ENSCJPG00005004598	KRT13 (ENSCJPG00005004597) #24	ENSCJPG00005004596 #22	ENSCJPG00005004595	ENSCJPG00005004594	KRT19 (ENSCJPG00005004587) #19	KRT15 (ENSCJPG00005004586)	KRT23 (ENSCJPG00005004577) #26	KRT20 (ENSCJPG00005004576) #30	KRT12 (ENSCJPG00005004575) #37	KRT222 (ENSCJPG00005004574)	SMARCE1 (ENSCJPG00005004573)	CCR7 (ENSCJPG00005004572)	TNS4 (ENSCJPG00005004571)	IGFBP4 (ENSCJPG00005004570)	ENSCJPG00005004568	TOP2A (ENSCJPG00005002732)	RARA (ENSCJPG00005002716)
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00940000174634	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.u	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00950000182969.B.c.a.a.c.f.a.d #22	ENSGT00950000182969.B.c.a.a.c.f.a.c #22	ENSGT00940000155258.t #19	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Turkey	MODERN SPECIES	21		ENSMGAG00000019618	ENSMGAG00000009314	ENSMGAG00000002851	TNS4 (ENSMGAG00000021108)	ENSMGAG00000002887	ENSMGAG00000002880	ENSMGAG00000022408 #22	KRT19 (ENSMGAG00000003084) #19	KRT23 (ENSMGAG00000003057) #26	KRT20 (ENSMGAG00000016371) #30	KRT12 (ENSMGAG00000017405) #37	KRT222 (ENSMGAG00000002908)	ENSMGAG00000002913	ENSMGAG00000020999	ENSMGAG00000016744 #22	ENSMGAG00000003113	ENSMGAG00000016911	ENSMGAG00000017065	ENSMGAG00000016949 #22	ENSMGAG00000016477 #18	ENSMGAG00000016610 #15	ENSMGAG00000016750	ENSMGAG00000010064 #14	ENSMGAG00000022609 #13	ENSMGAG00000006992 #12	NT5C3B (ENSMGAG00000007006) #11	ENSMGAG00000003146 #10	ENSMGAG00000003122	ACLY (ENSMGAG00000003163) #9	ODAD4 (ENSMGAG00000003248) #8
Chicken	MODERN SPECIES	19	CNP (ENSGALG00010023043) #7	ENSGALG00010022985	ACLY (ENSGALG00010022919) #9	KLHL11 (ENSGALG00010022866) #10	KLHL10 (ENSGALG00010022800)	NT5C3B (ENSGALG00010022747) #11	FKBP10 (ENSGALG00010022656) #12	P3H4 (ENSGALG00010022608) #13	JUP (ENSGALG00010021261) #14	ENSGALG00010021221 #15	ENSGALG00010021209	EIF1 (ENSGALG00010022682) #18	KRT17 (ENSGALG00010022946)	KRT14 (ENSGALG00010026690)	ENSGALG00010023183	ENSGALG00010026731 #22	ENSGALG00010023089	ENSGALG00010026755	ENSGALG00010026719 #22	ENSGALG00010022953 #22	KRT24 (ENSGALG00010026706) #19	KRT13 (ENSGALG00010022872)	KRT23 (ENSGALG00010022817) #26	KRT40 (ENSGALG00010022786) #30	KRT12 (ENSGALG00010022765) #37	KRT222 (ENSGALG00010022725)	SMARCE1 (ENSGALG00010022547)	CCR7 (ENSGALG00010022529)	TNS4 (ENSGALG00010022522)	IGFBP4 (ENSGALG00010022511)	ENSGALG00010022502
Anatidae	ANCESTRAL SPECIES	43	ENSGT00940000157943.b	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00940000163247.t	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A.c.b	ENSGT00940000165820.A.c.a	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997
Duck	MODERN SPECIES	19	ENSAPLG00000028081	KCNH4 (ENSAPLG00000009380)	RAB5C (ENSAPLG00000027551)	KAT2A (ENSAPLG00000013309)	DHX58 (ENSAPLG00000013187)	ENSAPLG00000003063	ZNF385C (ENSAPLG00000002883)	NKIRAS2 (ENSAPLG00000002856)	DNAJC7 (ENSAPLG00000002392)	CNP (ENSAPLG00000002170) #7	ENSAPLG00000016067 #9	KLHL11 (ENSAPLG00000030316) #10	KLHL10 (ENSAPLG00000015963)	ENSAPLG00000008725	ENSAPLG00000022579	ENSAPLG00000028586 #22	ENSAPLG00000010116	ENSAPLG00000029963	ENSAPLG00000008997	KRT15 (ENSAPLG00000008949)	KRT23 (ENSAPLG00000008879) #26	KRT20 (ENSAPLG00000008808) #30	KRT12 (ENSAPLG00000008362) #37	ENSAPLG00000025779	KRT222 (ENSAPLG00000008286)	SMARCE1 (ENSAPLG00000008102)	CCR7 (ENSAPLG00000008028)	TOP2A (ENSAPLG00000006390)	ENSAPLG00000000844	ENSAPLG00000000849	ENSAPLG00000000855
Pink-footed goose	MODERN SPECIES	200	ZNF385C (ENSABRG00000009526)	NKIRAS2 (ENSABRG00000009507)	DNAJC7 (ENSABRG00000009496)	CNP (ENSABRG00000009480) #7	ODAD4 (ENSABRG00000009465) #8	ACLY (ENSABRG00000009396) #9	KLHL11 (ENSABRG00000009354) #10	KLHL10 (ENSABRG00000009322)	NT5C3B (ENSABRG00000009275) #11	FKBP10 (ENSABRG00000009239) #12	P3H4 (ENSABRG00000009188) #13	JUP (ENSABRG00000009164) #14	ENSABRG00000008659 #15	ENSABRG00000008630	ENSABRG00000008514	ENSABRG00000008472 #22	ENSABRG00000008452	ENSABRG00000008429	EIF1 (ENSABRG00000008424) #18	ENSABRG00000008408 #22
African ostrich	MODERN SPECIES	1063	ENSSCUG00000013751	KAT2A (ENSSCUG00000013767)	DHX58 (ENSSCUG00000013803)	ENSSCUG00000013804	NKIRAS2 (ENSSCUG00000013806)	DNAJC7 (ENSSCUG00000013811)	CNP (ENSSCUG00000013817) #7	ODAD4 (ENSSCUG00000013820) #8	ACLY (ENSSCUG00000013827) #9	KLHL11 (ENSSCUG00000013838) #10	KLHL10 (ENSSCUG00000013839)	NT5C3B (ENSSCUG00000013841) #11	JUP (ENSSCUG00000013848) #14	KRT15 (ENSSCUG00000013863)	ENSSCUG00000013869	ENSSCUG00000013874 #22	ENSSCUG00000013880	ENSSCUG00000013882	ENSSCUG00000013888 #22	KRT23 (ENSSCUG00000013894) #26	KRT20 (ENSSCUG00000013897) #30	KRT12 (ENSSCUG00000013904) #37	KRT222 (ENSSCUG00000013911)	SMARCE1 (ENSSCUG00000013919)	CCR7 (ENSSCUG00000013931)	TNS4 (ENSSCUG00000013935)
Lepidosauria	DUPLICATION
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000183311 #24	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142
Episquamata	ANCESTRAL SPECIES	5	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000183311 #24	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i #22	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b
Laterata	ANCESTRAL SPECIES	11	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i #22	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000016276	PSMC5 (ENSPMRG00000016280)	SMARCD2 (ENSPMRG00000016290)	ENSPMRG00000016296	CRHR1 (ENSPMRG00000016303)	ENSPMRG00000016318	ENSPMRG00000016329 #15	JUP (ENSPMRG00000016348) #14	P3H4 (ENSPMRG00000016362) #13	ENSPMRG00000016378	ENSPMRG00000016387 #19	EIF1 (ENSPMRG00000016400) #18	ENSPMRG00000016412	ENSPMRG00000016440 #22	ENSPMRG00000016447	ENSPMRG00000016458 #22	ENSPMRG00000016468	ENSPMRG00000016471	ENSPMRG00000016479	KRT15 (ENSPMRG00000016495)	ENSPMRG00000016555 #25	ENSPMRG00000016684 #25	KRT23 (ENSPMRG00000016687) #26	ENSPMRG00000016695 #28	KRT12 (ENSPMRG00000016698) #37	ENSPMRG00000016700	ENSPMRG00000016710	ENSPMRG00000016716	ENSPMRG00000016724	KRT222 (ENSPMRG00000016731)	SMARCE1 (ENSPMRG00000016736)
Argentine black and white tegu	MODERN SPECIES	32	SMARCD2 (ENSSMRG00000002625)	ENSSMRG00000002629	CRHR1 (ENSSMRG00000002663)	ENSSMRG00000002673	ENSSMRG00000002674	ENSSMRG00000002676 #15	JUP (ENSSMRG00000002811) #14	P3H4 (ENSSMRG00000002814) #13	ENSSMRG00000002816	EIF1 (ENSSMRG00000002817) #18	ENSSMRG00000002819 #27	ENSSMRG00000002850 #22	ENSSMRG00000002871	KRT17 (ENSSMRG00000003112)	ENSSMRG00000003114 #22	ENSSMRG00000003116 #22	ENSSMRG00000003125	ENSSMRG00000003133	ENSSMRG00000003224	KRT15 (ENSSMRG00000003225)	ENSSMRG00000003231 #25	ENSSMRG00000004380 #25	KRT23 (ENSSMRG00000004509) #26	KRT12 (ENSSMRG00000004542) #37	ENSSMRG00000004555	ENSSMRG00000004566	ENSSMRG00000004576	ENSSMRG00000004729	KRT222 (ENSSMRG00000005317)	SMARCE1 (ENSSMRG00000005320)	CCR7 (ENSSMRG00000005327)
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000183311 #24	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i #22	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539
Lizard	DUPLICATION
Lizard	MODERN SPECIES	5	ENSACAG00000044378	ENSACAG00000017907	ENSACAG00000017908	ENSACAG00000017899 #15	ENSACAG00000037441	ENSACAG00000041527	ENSACAG00000017889 #14	P3H4 (ENSACAG00000017887) #13	ENSACAG00000035521	EIF1 (ENSACAG00000036849) #18	KRT19 (ENSACAG00000028562) #19	ENSACAG00000037211	ENSACAG00000026769 #22	ENSACAG00000035898 #22	ENSACAG00000035166	ENSACAG00000017876 #22	ENSACAG00000017874 #22	ENSACAG00000027366	ENSACAG00000029628	ENSACAG00000017868	KRT36 (ENSACAG00000015803) #25	KRT15 (ENSACAG00000028720)	KRT23 (ENSACAG00000029308) #26	ENSACAG00000036063 #28	KRT12 (ENSACAG00000017866) #37	ENSACAG00000043829 #37	krt36 (ENSACAG00000017860)	ENSACAG00000028648	ENSACAG00000043058	ENSACAG00000038974	SMARCE1 (ENSACAG00000016067)
Lizard	MODERN SPECIES	5	ENSACAG00000017907	ENSACAG00000017908	ENSACAG00000017899 #15	ENSACAG00000037441	ENSACAG00000041527	ENSACAG00000017889 #14	P3H4 (ENSACAG00000017887) #13	ENSACAG00000035521	EIF1 (ENSACAG00000036849) #18	KRT19 (ENSACAG00000028562) #19	ENSACAG00000037211	ENSACAG00000026769 #22	ENSACAG00000035898 #22	ENSACAG00000035166	ENSACAG00000017876 #22	ENSACAG00000017874 #22	ENSACAG00000027366	ENSACAG00000029628	ENSACAG00000017868	KRT36 (ENSACAG00000015803) #25	KRT15 (ENSACAG00000028720)	KRT23 (ENSACAG00000029308) #26	ENSACAG00000036063 #28	KRT12 (ENSACAG00000017866) #37	ENSACAG00000043829 #37	krt36 (ENSACAG00000017860)	ENSACAG00000028648	ENSACAG00000043058	ENSACAG00000038974	SMARCE1 (ENSACAG00000016067)	CCR7 (ENSACAG00000042682)
Elapidae	ANCESTRAL SPECIES																	ENSGT00950000182969.B.c.a.a.c.f.b.i #22
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b.a #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.q	ENSGT00950000182969.B.c.a.a.c.g #22	ENSGT00940000163247.p	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000182969.B.c.a.a.c.f.b.i #22
Blue-lipped sea krait	MODERN SPECIES	7529																ENSLLTG00000004713 #22
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00390000018397	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b.a #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.q	ENSGT00950000182969.B.c.a.a.c.g #22	ENSGT00940000163247.p	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000182969.B.c.a.a.c.f.b.i #22
Eastern brown snake	MODERN SPECIES	139	ENSPTXG00000011707	FTSJ3 (ENSPTXG00000018321)	PSMC5 (ENSPTXG00000018319)	SMARCD2 (ENSPTXG00000018318)	ENSPTXG00000018317	CRHR1 (ENSPTXG00000018316)	ENSPTXG00000018314	RDM1 (ENSPTXG00000018313)	ENSPTXG00000018311 #15	JUP (ENSPTXG00000018308) #14	P3H4 (ENSPTXG00000018306) #13	EIF1 (ENSPTXG00000018305) #18	ENSPTXG00000018240 #22	ENSPTXG00000018030	ENSPTXG00000018029 #22	ENSPTXG00000018027 #22
tuatara	MODERN SPECIES	1950	DNAJC7 (ENSSPUG00000013180)	CNP (ENSSPUG00000013203) #7	ODAD4 (ENSSPUG00000013219) #8	ACLY (ENSSPUG00000013260) #9	KLHL11 (ENSSPUG00000013389) #10	KLHL10 (ENSSPUG00000013393)	NT5C3B (ENSSPUG00000013406) #11	FKBP10 (ENSSPUG00000013421) #12	P3H4 (ENSSPUG00000013436) #13	JUP (ENSSPUG00000013455) #14	ENSSPUG00000013483	EIF1 (ENSSPUG00000013490) #18	ENSSPUG00000013500 #19	ENSSPUG00000013511	ENSSPUG00000013534	ENSSPUG00000013544 #22	ENSSPUG00000013576	KRT15 (ENSSPUG00000013597)	ENSSPUG00000013612 #25	ENSSPUG00000013664 #25	KRT23 (ENSSPUG00000013704) #26	KRT20 (ENSSPUG00000013731) #30	KRT12 (ENSSPUG00000013794) #37	KRT10 (ENSSPUG00000013830)	ENSSPUG00000013886	ENSSPUG00000013896	KRT222 (ENSSPUG00000013908)	SMARCE1 (ENSSPUG00000013927)
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00940000155338	ENSGT00510000048410 #7	ENSGT00390000007911 #8	ENSGT00940000154881 #9	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000183311 #24	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00940000159382 #37	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000154991.b	ENSGT00390000008726.h.b.f.b	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000183311 #24	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i #22	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a	ENSGT00940000161783.b
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000154991.b	ENSGT00390000008726.h.b.f.b	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i #22	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655
Common wall lizard	MODERN SPECIES	4	ASIC2 (ENSPMRG00000016236)	ENSPMRG00000016266	ENSPMRG00000016276	PSMC5 (ENSPMRG00000016280)	SMARCD2 (ENSPMRG00000016290)	ENSPMRG00000016296	CRHR1 (ENSPMRG00000016303)	ENSPMRG00000016318	ENSPMRG00000016329 #15	JUP (ENSPMRG00000016348) #14	P3H4 (ENSPMRG00000016362) #13	ENSPMRG00000016378	ENSPMRG00000016387 #19	EIF1 (ENSPMRG00000016400) #18	ENSPMRG00000016412	ENSPMRG00000016440 #22	ENSPMRG00000016447	ENSPMRG00000016458 #22	ENSPMRG00000016468	ENSPMRG00000016471	ENSPMRG00000016479	KRT15 (ENSPMRG00000016495)	ENSPMRG00000016555 #25	ENSPMRG00000016684 #25	KRT23 (ENSPMRG00000016687) #26	ENSPMRG00000016695 #28	KRT12 (ENSPMRG00000016698) #37	ENSPMRG00000016700	ENSPMRG00000016710	ENSPMRG00000016716	ENSPMRG00000016724
Argentine black and white tegu	MODERN SPECIES	32	PSMC5 (ENSSMRG00000002618)	SMARCD2 (ENSSMRG00000002625)	ENSSMRG00000002629	CRHR1 (ENSSMRG00000002663)	ENSSMRG00000002673	ENSSMRG00000002674	ENSSMRG00000002676 #15	JUP (ENSSMRG00000002811) #14	P3H4 (ENSSMRG00000002814) #13	ENSSMRG00000002816	EIF1 (ENSSMRG00000002817) #18	ENSSMRG00000002819 #27	ENSSMRG00000002850 #22	ENSSMRG00000002871	KRT17 (ENSSMRG00000003112)	ENSSMRG00000003114 #22	ENSSMRG00000003116 #22	ENSSMRG00000003125	ENSSMRG00000003133	ENSSMRG00000003224	KRT15 (ENSSMRG00000003225)	ENSSMRG00000003231 #25	ENSSMRG00000004380 #25	KRT23 (ENSSMRG00000004509) #26	KRT12 (ENSSMRG00000004542) #37	ENSSMRG00000004555	ENSSMRG00000004566	ENSSMRG00000004576	ENSSMRG00000004729	KRT222 (ENSSMRG00000005317)	SMARCE1 (ENSSMRG00000005320)
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000154991.a.b	ENSGT00940000154991.b	ENSGT00390000008726.h.b.f.b	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000183311 #24	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i #22	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142
Elapidae	ANCESTRAL SPECIES	5	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.q	ENSGT00950000182969.B.c.a.a.c.g #22	ENSGT00940000163247.p	ENSGT00940000154403.a.b	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000183311 #24	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.f #37	ENSGT00940000160849.p.b	ENSGT00940000159382.e #37	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Indian cobra	MODERN SPECIES	337	ENSNNAG00000005714	ASIC2 (ENSNNAG00000005523)	ENSNNAG00000005455	FTSJ3 (ENSNNAG00000005406)	PSMC5 (ENSNNAG00000005372)	SMARCD2 (ENSNNAG00000005345)	ENSNNAG00000005306	CRHR1 (ENSNNAG00000005231)	ENSNNAG00000004950 #15	JUP (ENSNNAG00000004885) #14	P3H4 (ENSNNAG00000004861) #13	ENSNNAG00000004857	EIF1 (ENSNNAG00000004838) #18	ENSNNAG00000004052 #22	ENSNNAG00000003954	ENSNNAG00000003935 #22	KRT13 (ENSNNAG00000003849) #24	ENSNNAG00000003812	KRT15 (ENSNNAG00000003755)	KRT23 (ENSNNAG00000003719) #26	ENSNNAG00000003608 #28	KRT10 (ENSNNAG00000003431)	KRT12 (ENSNNAG00000003388) #37	ENSNNAG00000003221	ENSNNAG00000015547	KRT222 (ENSNNAG00000015493)	SMARCE1 (ENSNNAG00000015477)	CCR7 (ENSNNAG00000015470)	TNS4 (ENSNNAG00000015322)	IGFBP4 (ENSNNAG00000015293)	ENSNNAG00000015270
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT00390000008726.h.b.f.b	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b.a #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.q	ENSGT00950000182969.B.c.a.a.c.g #22	ENSGT00940000163247.p	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000182969.B.c.a.a.c.f.b.i #22
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00390000018397	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b.a #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.q	ENSGT00950000182969.B.c.a.a.c.g #22	ENSGT00940000163247.p	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000182969.B.c.a.a.c.f.b.i #22
Eastern brown snake	MODERN SPECIES	139	ASIC2 (ENSPTXG00000011708)	ENSPTXG00000011707	FTSJ3 (ENSPTXG00000018321)	PSMC5 (ENSPTXG00000018319)	SMARCD2 (ENSPTXG00000018318)	ENSPTXG00000018317	CRHR1 (ENSPTXG00000018316)	ENSPTXG00000018314	RDM1 (ENSPTXG00000018313)	ENSPTXG00000018311 #15	JUP (ENSPTXG00000018308) #14	P3H4 (ENSPTXG00000018306) #13	EIF1 (ENSPTXG00000018305) #18	ENSPTXG00000018240 #22	ENSPTXG00000018030	ENSPTXG00000018029 #22	ENSPTXG00000018027 #22
Blue-lipped sea krait	MODERN SPECIES	7888																ENSLLTG00000005337 #22
Lizard	MODERN SPECIES	5	ENSACAG00000017919	ENSACAG00000017912	ENSACAG00000044378	ENSACAG00000017907	ENSACAG00000017908	ENSACAG00000017899 #15	ENSACAG00000037441	ENSACAG00000041527	ENSACAG00000017889 #14	P3H4 (ENSACAG00000017887) #13	ENSACAG00000035521	EIF1 (ENSACAG00000036849) #18	KRT19 (ENSACAG00000028562) #19	ENSACAG00000037211	ENSACAG00000026769 #22	ENSACAG00000035898 #22	ENSACAG00000035166	ENSACAG00000017876 #22	ENSACAG00000017874 #22	ENSACAG00000027366	ENSACAG00000029628	ENSACAG00000017868	KRT36 (ENSACAG00000015803) #25	KRT15 (ENSACAG00000028720)	KRT23 (ENSACAG00000029308) #26	ENSACAG00000036063 #28	KRT12 (ENSACAG00000017866) #37	ENSACAG00000043829 #37	krt36 (ENSACAG00000017860)	ENSACAG00000028648	ENSACAG00000043058
Sauria	ANCESTRAL SPECIES	271															ENSGT00950000182969.B.d #27	ENSGT00950000182969.B.c.a.a.c.g #22
Lepidosauria	ANCESTRAL SPECIES	328															ENSGT00950000182969.B.d #27	ENSGT00950000182969.B.c.a.a.c.g #22
Episquamata	ANCESTRAL SPECIES	178															ENSGT00950000182969.B.d #27	ENSGT00950000182969.B.c.a.a.c.g #22
Toxicofera	ANCESTRAL SPECIES																	ENSGT00950000182969.B.c.a.a.c.g #22
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000154991.a.b	ENSGT00940000154991.b	ENSGT00390000008726.h.b.f.b	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.q	ENSGT00950000182969.B.c.a.a.c.g #22	ENSGT00940000163247.p	ENSGT00940000154403.a.b	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000183311 #24	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.f #37	ENSGT00940000160849.p.b	ENSGT00940000159382.e #37	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT00940000154991.a.b	ENSGT00940000154991.b	ENSGT00390000008726.h.b.f.b	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b.a #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.q	ENSGT00950000182969.B.c.a.a.c.g #22	ENSGT00940000163247.p	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000182969.B.c.a.a.c.f.b.i #22
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT00940000154991.b	ENSGT00390000008726.h.b.f.b	ENSGT00550000075004	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT01100000263505.b.b.b.b	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00390000018397	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b.a #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.q	ENSGT00950000182969.B.c.a.a.c.g #22	ENSGT00940000163247.p	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000182969.B.c.a.a.c.f.b.i #22
Eastern brown snake	MODERN SPECIES	139			ASIC2 (ENSPTXG00000011708)	ENSPTXG00000011707	FTSJ3 (ENSPTXG00000018321)	PSMC5 (ENSPTXG00000018319)	SMARCD2 (ENSPTXG00000018318)	ENSPTXG00000018317	CRHR1 (ENSPTXG00000018316)	ENSPTXG00000018314	RDM1 (ENSPTXG00000018313)	ENSPTXG00000018311 #15	JUP (ENSPTXG00000018308) #14	P3H4 (ENSPTXG00000018306) #13	EIF1 (ENSPTXG00000018305) #18	ENSPTXG00000018240 #22	ENSPTXG00000018030	ENSPTXG00000018029 #22	ENSPTXG00000018027 #22
Indian cobra	MODERN SPECIES	337	CAVIN1 (ENSNNAG00000006373)	ATP6V0A1 (ENSNNAG00000005793)	ENSNNAG00000005714	ASIC2 (ENSNNAG00000005523)	ENSNNAG00000005455	FTSJ3 (ENSNNAG00000005406)	PSMC5 (ENSNNAG00000005372)	SMARCD2 (ENSNNAG00000005345)	ENSNNAG00000005306	CRHR1 (ENSNNAG00000005231)	ENSNNAG00000004950 #15	JUP (ENSNNAG00000004885) #14	P3H4 (ENSNNAG00000004861) #13	ENSNNAG00000004857	EIF1 (ENSNNAG00000004838) #18	ENSNNAG00000004052 #22	ENSNNAG00000003954	ENSNNAG00000003935 #22	KRT13 (ENSNNAG00000003849) #24	ENSNNAG00000003812	KRT15 (ENSNNAG00000003755)	KRT23 (ENSNNAG00000003719) #26	ENSNNAG00000003608 #28	KRT10 (ENSNNAG00000003431)	KRT12 (ENSNNAG00000003388) #37	ENSNNAG00000003221	ENSNNAG00000015547	KRT222 (ENSNNAG00000015493)	SMARCE1 (ENSNNAG00000015477)	CCR7 (ENSNNAG00000015470)	TNS4 (ENSNNAG00000015322)
Lizard	MODERN SPECIES	5	SMARCD2 (ENSACAG00000017920)	ENSACAG00000017919	ENSACAG00000017912	ENSACAG00000044378	ENSACAG00000017907	ENSACAG00000017908	ENSACAG00000017899 #15	ENSACAG00000037441	ENSACAG00000041527	ENSACAG00000017889 #14	P3H4 (ENSACAG00000017887) #13	ENSACAG00000035521	EIF1 (ENSACAG00000036849) #18	KRT19 (ENSACAG00000028562) #19	ENSACAG00000037211	ENSACAG00000026769 #22	ENSACAG00000035898 #22	ENSACAG00000035166	ENSACAG00000017876 #22	ENSACAG00000017874 #22	ENSACAG00000027366	ENSACAG00000029628	ENSACAG00000017868	KRT36 (ENSACAG00000015803) #25	KRT15 (ENSACAG00000028720)	KRT23 (ENSACAG00000029308) #26	ENSACAG00000036063 #28	KRT12 (ENSACAG00000017866) #37	ENSACAG00000043829 #37	krt36 (ENSACAG00000017860)	ENSACAG00000028648
Laterata	ANCESTRAL SPECIES	169															ENSGT00950000182969.B.d #27	ENSGT00950000182969.B.c.a.a.c.g #22
Argentine black and white tegu	MODERN SPECIES	32	ASIC2 (ENSSMRG00000002594)	ENSSMRG00000002598	FTSJ3 (ENSSMRG00000002614)	PSMC5 (ENSSMRG00000002618)	SMARCD2 (ENSSMRG00000002625)	ENSSMRG00000002629	CRHR1 (ENSSMRG00000002663)	ENSSMRG00000002673	ENSSMRG00000002674	ENSSMRG00000002676 #15	JUP (ENSSMRG00000002811) #14	P3H4 (ENSSMRG00000002814) #13	ENSSMRG00000002816	EIF1 (ENSSMRG00000002817) #18	ENSSMRG00000002819 #27	ENSSMRG00000002850 #22	ENSSMRG00000002871	KRT17 (ENSSMRG00000003112)	ENSSMRG00000003114 #22	ENSSMRG00000003116 #22	ENSSMRG00000003125	ENSSMRG00000003133	ENSSMRG00000003224	KRT15 (ENSSMRG00000003225)	ENSSMRG00000003231 #25	ENSSMRG00000004380 #25	KRT23 (ENSSMRG00000004509) #26	KRT12 (ENSSMRG00000004542) #37	ENSSMRG00000004555	ENSSMRG00000004566	ENSSMRG00000004576
Tetrapoda	ANCESTRAL SPECIES	21	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT00390000014792 #16	ENSGT00390000015789.c #18	ENSGT00950000182969.B.c.a.a.c #22	ENSGT00940000155258 #19	ENSGT00940000154403	ENSGT00950000183311 #24	ENSGT00940000161311 #25	ENSGT00940000161077 #26	ENSGT00950000182969.B.d #27	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000165938	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557	ENSGT00940000160144	ENSGT00390000006930
Amniota	ANCESTRAL SPECIES																	ENSGT00950000182969.B.c.a.a.d #28
Sauria	ANCESTRAL SPECIES																	ENSGT00950000182969.B.c.a.a.d #28
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00950000182969.B.c.a.a.d #28
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000183311 #24	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i #22	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000183311 #24	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i #22	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557	ENSGT00940000160144
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000158410	ENSGT00940000162770.p.a.a	ENSGT00940000162183 #15	ENSGT00940000156395 #14	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.q	ENSGT00950000182969.B.c.a.a.c.g #22	ENSGT00940000163247.p	ENSGT00940000154403.a.b	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00950000183311 #24	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.f #37	ENSGT00940000160849.p.b	ENSGT00940000159382.e #37	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539.e	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A
Elapidae_a	ANCESTRAL SPECIES	142														ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.f #37	ENSGT00940000160849.p.b	ENSGT00940000159382.e #37	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Acanthophiinae	ANCESTRAL SPECIES	133														ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.f #37	ENSGT00940000160849.p.b	ENSGT00940000159382.e #37	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A
Mainland tiger snake	MODERN SPECIES	274													ENSNSUG00000008380	ENSNSUG00000008381	KRT23 (ENSNSUG00000008382) #26	ENSNSUG00000008383 #28	ENSNSUG00000008385 #37	ENSNSUG00000008397 #37	ENSNSUG00000008398	ENSNSUG00000008399	KRT222 (ENSNSUG00000008400)	SMARCE1 (ENSNSUG00000008401)	CCR7 (ENSNSUG00000008402)	ENSNSUG00000008403	TNS4 (ENSNSUG00000008404)	ENSNSUG00000008406	IGFBP4 (ENSNSUG00000008408)	ENSNSUG00000008409
Eastern brown snake	MODERN SPECIES	197													ENSPTXG00000015877	KRT15 (ENSPTXG00000015872)	KRT23 (ENSPTXG00000015869) #26	ENSPTXG00000015868 #28	KRT10 (ENSPTXG00000015858)	KRT12 (ENSPTXG00000015850) #37	ENSPTXG00000015786	ENSPTXG00000015780	KRT222 (ENSPTXG00000015777)	SMARCE1 (ENSPTXG00000015776)	CCR7 (ENSPTXG00000015775)	TNS4 (ENSPTXG00000015773)	IGFBP4 (ENSPTXG00000015772)
Indian cobra	MODERN SPECIES	337	SMARCD2 (ENSNNAG00000005345)	ENSNNAG00000005306	CRHR1 (ENSNNAG00000005231)	ENSNNAG00000004950 #15	JUP (ENSNNAG00000004885) #14	P3H4 (ENSNNAG00000004861) #13	ENSNNAG00000004857	EIF1 (ENSNNAG00000004838) #18	ENSNNAG00000004052 #22	ENSNNAG00000003954	ENSNNAG00000003935 #22	KRT13 (ENSNNAG00000003849) #24	ENSNNAG00000003812	KRT15 (ENSNNAG00000003755)	KRT23 (ENSNNAG00000003719) #26	ENSNNAG00000003608 #28	KRT10 (ENSNNAG00000003431)	KRT12 (ENSNNAG00000003388) #37	ENSNNAG00000003221	ENSNNAG00000015547	KRT222 (ENSNNAG00000015493)	SMARCE1 (ENSNNAG00000015477)	CCR7 (ENSNNAG00000015470)	TNS4 (ENSNNAG00000015322)	IGFBP4 (ENSNNAG00000015293)	ENSNNAG00000015270	ENSNNAG00000015220	ENSNNAG00000015184	GJD3 (ENSNNAG00000015167)	RARA (ENSNNAG00000015151)	CDC6 (ENSNNAG00000015116)
Lizard	MODERN SPECIES	5	ENSACAG00000035521	EIF1 (ENSACAG00000036849) #18	KRT19 (ENSACAG00000028562) #19	ENSACAG00000037211	ENSACAG00000026769 #22	ENSACAG00000035898 #22	ENSACAG00000035166	ENSACAG00000017876 #22	ENSACAG00000017874 #22	ENSACAG00000027366	ENSACAG00000029628	ENSACAG00000017868	KRT36 (ENSACAG00000015803) #25	KRT15 (ENSACAG00000028720)	KRT23 (ENSACAG00000029308) #26	ENSACAG00000036063 #28	KRT12 (ENSACAG00000017866) #37	ENSACAG00000043829 #37	krt36 (ENSACAG00000017860)	ENSACAG00000028648	ENSACAG00000043058	ENSACAG00000038974	SMARCE1 (ENSACAG00000016067)	CCR7 (ENSACAG00000042682)	TNS4 (ENSACAG00000016132)	IGFBP4 (ENSACAG00000035156)	TOP2A (ENSACAG00000001904)	GJD3 (ENSACAG00000002406)	ENSACAG00000040322	ENSACAG00000040379	RARA (ENSACAG00000002413)
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000156395 #14	ENSGT00940000153814.b #13	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b.j #22	ENSGT00940000165820.B	ENSGT00950000182969.B.c.a.a.c.f.b.i #22	ENSGT00940000165820.A.b	ENSGT00940000165820.A.a	ENSGT00940000154403.b	ENSGT00940000161311.d #25	ENSGT00940000161311.c #25	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000160849.p.b	ENSGT00940000160849.p.a	ENSGT00940000161783.a	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557
Common wall lizard	MODERN SPECIES	4	P3H4 (ENSPMRG00000016362) #13	ENSPMRG00000016378	ENSPMRG00000016387 #19	EIF1 (ENSPMRG00000016400) #18	ENSPMRG00000016412	ENSPMRG00000016440 #22	ENSPMRG00000016447	ENSPMRG00000016458 #22	ENSPMRG00000016468	ENSPMRG00000016471	ENSPMRG00000016479	KRT15 (ENSPMRG00000016495)	ENSPMRG00000016555 #25	ENSPMRG00000016684 #25	KRT23 (ENSPMRG00000016687) #26	ENSPMRG00000016695 #28	KRT12 (ENSPMRG00000016698) #37	ENSPMRG00000016700	ENSPMRG00000016710	ENSPMRG00000016716	ENSPMRG00000016724	KRT222 (ENSPMRG00000016731)	SMARCE1 (ENSPMRG00000016736)	CCR7 (ENSPMRG00000016748)	TNS4 (ENSPMRG00000016753)	IGFBP4 (ENSPMRG00000016758)	ENSPMRG00000016767	TOP2A (ENSPMRG00000016771)	GJD3 (ENSPMRG00000016782)	RARA (ENSPMRG00000016786)	CDC6 (ENSPMRG00000016792)
Archelosauria	ANCESTRAL SPECIES																	ENSGT00950000182969.B.c.a.a.d #28
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00940000161855 #30	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382 #37	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557	ENSGT01080000258839	ENSGT00940000160144
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247.w	ENSGT00940000163247.v	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.d #37	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557.vb	ENSGT00940000155557.wb	ENSGT00940000160144
Emydidae	ANCESTRAL SPECIES	26	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000155258.t #19	ENSGT00940000163247.w	ENSGT00940000163247.v	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.d #37	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557.vb	ENSGT00940000155557.wb	ENSGT00940000160144
painted turtle	MODERN SPECIES	2394	KLHL10 (ENSCPBG00000006629)	NT5C3B (ENSCPBG00000006621) #11	FKBP10 (ENSCPBG00000006612) #12	P3H4 (ENSCPBG00000006605) #13	ENSCPBG00000006602	JUP (ENSCPBG00000006592) #14	ENSCPBG00000006587 #15	ENSCPBG00000006570	ENSCPBG00000006566	ENSCPBG00000006557	ENSCPBG00000006527 #22	ENSCPBG00000006507	ENSCPBG00000006500	KRT15 (ENSCPBG00000006494)	KRT23 (ENSCPBG00000006488) #26	ENSCPBG00000005869 #28	KRT12 (ENSCPBG00000005794) #37	KRT24 (ENSCPBG00000005755)	KRT222 (ENSCPBG00000005743)	SMARCE1 (ENSCPBG00000005734)	CCR7 (ENSCPBG00000005728)	TNS4 (ENSCPBG00000005006)	IGFBP4 (ENSCPBG00000004980)	TOP2A (ENSCPBG00000004966)	GJD3 (ENSCPBG00000004957)	ENSCPBG00000004951	CDC6 (ENSCPBG00000004797)	ENSCPBG00000004786	ENSCPBG00000004781	RAPGEFL1 (ENSCPBG00000004773)	CASC3 (ENSCPBG00000004750)
Three-toed box turtle	MODERN SPECIES	91	KLHL10 (ENSTMTG00000007021)	NT5C3B (ENSTMTG00000007037) #11	FKBP10 (ENSTMTG00000007058) #12	P3H4 (ENSTMTG00000007081) #13	JUP (ENSTMTG00000007105) #14	ENSTMTG00000007181 #15	ENSTMTG00000007574	EIF1 (ENSTMTG00000007588) #18	ENSTMTG00000007603 #19	ENSTMTG00000007628	ENSTMTG00000007662	ENSTMTG00000007676	ENSTMTG00000007705	KRT15 (ENSTMTG00000007720)	KRT23 (ENSTMTG00000007749) #26	ENSTMTG00000007803 #28	KRT12 (ENSTMTG00000008143) #37	KRT24 (ENSTMTG00000008250)	KRT222 (ENSTMTG00000008270)	SMARCE1 (ENSTMTG00000008288)	CCR7 (ENSTMTG00000008302)	ENSTMTG00000008307	TNS4 (ENSTMTG00000008315)	IGFBP4 (ENSTMTG00000008352)	ENSTMTG00000008359	ENSTMTG00000008387	ENSTMTG00000008433	RARA (ENSTMTG00000008461)	CDC6 (ENSTMTG00000008490)	ENSTMTG00000008533	ENSTMTG00000008537
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00940000159275 #10	ENSGT00940000154664	ENSGT00390000012959.a #11	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT01030000235196	ENSGT00390000015789.c #18	ENSGT00940000163247.w	ENSGT00940000163247.v	ENSGT00950000182969.B.c.a.a.c.f.b #22	ENSGT00940000165820.A	ENSGT00940000154403.b	ENSGT00940000161077 #26	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.d #37	ENSGT00940000161783.b	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997	ENSGT00530000063498.A	ENSGT00940000155557.vb	ENSGT00940000155557.wb	ENSGT00940000160144
Goode s thornscrub tortoise	MODERN SPECIES	15	FKBP10 (ENSGEVG00005011165) #12	P3H4 (ENSGEVG00005011368) #13	JUP (ENSGEVG00005011560) #14	ENSGEVG00005011615 #15	ENSGEVG00005011873	EIF1 (ENSGEVG00005011907) #18	ENSGEVG00005011929 #37	ENSGEVG00005012012	ENSGEVG00005012106	ENSGEVG00005012196 #22	ENSGEVG00005012379 #22	ENSGEVG00005012618	ENSGEVG00005012756	KRT15 (ENSGEVG00005012829)	KRT23 (ENSGEVG00005012916) #26	ENSGEVG00005013074 #28	KRT12 (ENSGEVG00005013775) #37	SMARCE1 (ENSGEVG00005014242)	CCR7 (ENSGEVG00005014270)	TNS4 (ENSGEVG00005014290)	IGFBP4 (ENSGEVG00005014377)	ENSGEVG00005014498	TOP2A (ENSGEVG00005015250)	GJD3 (ENSGEVG00005018837)	RARA (ENSGEVG00005018860)	CDC6 (ENSGEVG00005018895)	WIPF2 (ENSGEVG00005018923)	ENSGEVG00005018935	RAPGEFL1 (ENSGEVG00005018949)	CASC3 (ENSGEVG00005018998)	MSL1 (ENSGEVG00005004312)
Abingdon island giant tortoise	MODERN SPECIES	1384	FKBP10 (ENSCABG00000011687) #12	P3H4 (ENSCABG00000011671) #13	JUP (ENSCABG00000011670) #14	ENSCABG00000011669 #15	ENSCABG00000011667	ENSCABG00000011664	ENSCABG00000011663	ENSCABG00000011659	ENSCABG00000011657	ENSCABG00000011651 #22	ENSCABG00000011642 #22	ENSCABG00000011634	ENSCABG00000011629	ENSCABG00000011624	KRT23 (ENSCABG00000011620) #26	ENSCABG00000011586 #28	KRT12 (ENSCABG00000011355) #37	KRT24 (ENSCABG00000011350)	KRT222 (ENSCABG00000011348)	SMARCE1 (ENSCABG00000011346)	CCR7 (ENSCABG00000011344)	ENSCABG00000011342	TNS4 (ENSCABG00000011249)	IGFBP4 (ENSCABG00000011238)	ENSCABG00000011235	TOP2A (ENSCABG00000011214)	GJD3 (ENSCABG00000011213)	RARA (ENSCABG00000011212)	CDC6 (ENSCABG00000011211)	ENSCABG00000011209	ENSCABG00000011207
Anura	ANCESTRAL SPECIES	15	ENSGT00940000156331 #12	ENSGT00940000153814.b #13	ENSGT00940000156395 #14	ENSGT00940000162183 #15	ENSGT00390000014792.a #16	ENSGT00390000015789.c #18	ENSGT00940000155258 #19	ENSGT00950000182969.B.c.a.a.c #22	ENSGT00950000183311.a ##24	ENSGT00940000154403	ENSGT00950000183311.b.a #23	ENSGT00950000183311.b.b #24	ENSGT00940000161311 #25	ENSGT00940000161077 #26	ENSGT00950000182969.B.d #27	ENSGT00950000182969.B.c.a.a.d #28	ENSGT00940000159382.m.b.b #29	ENSGT00940000159382.m.b.a #31	ENSGT00940000159382.m.a.b #32	ENSGT00940000159382.m.a.a #36	ENSGT00940000159382.n #37	ENSGT00940000159655	ENSGT00390000003628.b	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159647	ENSGT00940000165938.d	ENSGT00940000158212.A	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000159997
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000026226 #25	ENSLLEG00000026285 #25	ENSLLEG00000026329 #25	ENSLLEG00000026388	ENSLLEG00000026422 #25	ENSLLEG00000026765 #19	ENSLLEG00000026866 #25	ENSLLEG00000026919 #25	ENSLLEG00000027000 #25	ENSLLEG00000027759 #25	ENSLLEG00000027858 #22	ENSLLEG00000027886 #22	KRT23 (ENSLLEG00000027913) #26	ENSLLEG00000027954 #27	ENSLLEG00000028003	ENSLLEG00000028013 #28	ENSLLEG00000028070 #29	ENSLLEG00000028103 #31	ENSLLEG00000028166 #31	ENSLLEG00000028459 #31	ENSLLEG00000028494 #31	ENSLLEG00000028611 #32	ENSLLEG00000028654 #36	ENSLLEG00000028707 #36	ENSLLEG00000028813	ENSLLEG00000028826 #37	ENSLLEG00000028876	ENSLLEG00000029215	SMARCE1 (ENSLLEG00000029236)	ENSLLEG00000029469	CCR7 (ENSLLEG00000029475)
Frog	MODERN SPECIES	1	p3h4 (ENSXETG00000002284) #13	jup (ENSXETG00000006970) #14	hap1 (ENSXETG00000012489) #15	gast (ENSXETG00000012490) #16	terf2ip (ENSXETG00000012487) #17	eif1 (ENSXETG00000025051) #18	krt70 (ENSXETG00000012488) #19	krt19 (ENSXETG00000012482) #20	krt9.1 (ENSXETG00000038225) #21	krt9.2 (ENSXETG00000035234) #22	krt15.1 (ENSXETG00000029985) #23	krt15.2 (ENSXETG00000017467) #24	krt34 (ENSXETG00000036344) #25	krt23 (ENSXETG00000040013) #26	ENSXETG00000045090 #27	krt12.1 (ENSXETG00000045813) #28	krt12.2 (ENSXETG00000021341) #29	krt20 (ENSXETG00000030511) #30	krt12.3 (ENSXETG00000025345) #31	krt12.6 (ENSXETG00000037468) #32	krt53 (ENSXETG00000031985) #33	ENSXETG00000041456 #34	ENSXETG00000043984 #35	krt55 (ENSXETG00000025340) #36	krt55 (ENSXETG00000025338) #37	krt222 (ENSXETG00000036910)	smarce1 (ENSXETG00000021355)	ccr7 (ENSXETG00000042814)	tns4 (ENSXETG00000046357)	igfbp4 (ENSXETG00000042693)	arf11l.2 (ENSXETG00000044010)