Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000153876.B	ENSGT00390000003682	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000155078.a.b.a.b	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00390000003682.gb.b	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Cetacea	ANCESTRAL SPECIES	16	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B.i #37	ENSGT00530000063410.a	ENSGT00390000016551
Blue whale	MODERN SPECIES	4	GFPT1 (ENSBMSG00010013920) #7	ANTXR1 (ENSBMSG00010014106) #8	GKN1 (ENSBMSG00010014173) #9	GKN2 (ENSBMSG00010014230) #10	ENSBMSG00010014270 #11	BMP10 (ENSBMSG00010014307) #12	ARHGAP25 (ENSBMSG00010014354) #13	PROKR1 (ENSBMSG00010014509) #14	APLF (ENSBMSG00010014533) #15	FBXO48 (ENSBMSG00010014557) #16	PLEK (ENSBMSG00010014580) #17	CNRIP1 (ENSBMSG00010014640) #18	PPP3R1 (ENSBMSG00010014702) #19	PNO1 (ENSBMSG00010014773) #20	DNAAF10 (ENSBMSG00010014807) #21	C1D (ENSBMSG00010014843) #22	ETAA1 (ENSBMSG00010014898) #23	MEIS1 (ENSBMSG00010014951) #24	SPRED2 (ENSBMSG00010015313) #25	ENSBMSG00010015420 #26	ACTR2 (ENSBMSG00010015452) #27	RAB1A (ENSBMSG00010015536) #28	CEP68 (ENSBMSG00010015630) #29	ENSBMSG00010015739 #30	SERTAD2 (ENSBMSG00010015761) #31	AFTPH (ENSBMSG00010015789) #32	ENSBMSG00010015828 #33	LGALSL (ENSBMSG00010015854) #34	PELI1 (ENSBMSG00010015886) #35	VPS54 (ENSBMSG00010015929) #36	ENSBMSG00010016142 #37
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00390000003682.gb.a.a.b	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B.i #37	ENSGT00390000002738.a.e.a
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00390000003682.gb.a.a.b	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B.i #37	ENSGT00390000002738.a.e.a
Dolphin	MODERN SPECIES	6733													PPP3R1 (ENSTTRG00000021395) #19	PNO1 (ENSTTRG00000014002) #20	DNAAF10 (ENSTTRG00000013991) #21	C1D (ENSTTRG00000013982) #22
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00390000003682.gb.a.a.b.b	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B.i #37	ENSGT00390000002738.a.e.a
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00390000003682.gb.a.a.b.b	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B.i #37	ENSGT00390000002738.a.e.a
Beluga whale	MODERN SPECIES	42	ANTXR1 (ENSDLEG00000005620) #8	GKN1 (ENSDLEG00000005657) #9	GKN2 (ENSDLEG00000005673) #10	ENSDLEG00000005689 #11	BMP10 (ENSDLEG00000005697) #12	ENSDLEG00000005710 #13	ARHGAP25 (ENSDLEG00000005744) #13	PROKR1 (ENSDLEG00000005769) #14	APLF (ENSDLEG00000005776) #15	FBXO48 (ENSDLEG00000005798) #16	PLEK (ENSDLEG00000005814) #17	CNRIP1 (ENSDLEG00000005826) #18	PPP3R1 (ENSDLEG00000005831) #19	PNO1 (ENSDLEG00000005835) #20	WDR92 (ENSDLEG00000005842) #21	C1D (ENSDLEG00000013334) #22	ETAA1 (ENSDLEG00000013344) #23	MEIS1 (ENSDLEG00000013356) #24	SPRED2 (ENSDLEG00000013406) #25	ACTR2 (ENSDLEG00000013424) #27	RAB1A (ENSDLEG00000013451) #28	CEP68 (ENSDLEG00000013462) #29	SLC1A4 (ENSDLEG00000013482) #30	SERTAD2 (ENSDLEG00000013497) #31	AFTPH (ENSDLEG00000013504) #32	LGALSL (ENSDLEG00000013531) #34	PELI1 (ENSDLEG00000013564) #35	VPS54 (ENSDLEG00000013588) #36	ENSDLEG00000013630	UGP2 (ENSDLEG00000013637) #37	ENSDLEG00000013659
Narwhal	MODERN SPECIES	305	GFPT1 (ENSMMNG00015014974) #7	ANTXR1 (ENSMMNG00015015005) #8	GKN1 (ENSMMNG00015015029) #9	GKN2 (ENSMMNG00015015048) #10	ENSMMNG00015015070 #11	BMP10 (ENSMMNG00015015084) #12	ARHGAP25 (ENSMMNG00015015108) #13	PROKR1 (ENSMMNG00015015283) #14	APLF (ENSMMNG00015015298) #15	FBXO48 (ENSMMNG00015015325) #16	PLEK (ENSMMNG00015015351) #17	CNRIP1 (ENSMMNG00015015380) #18	PPP3R1 (ENSMMNG00015015405) #19	PNO1 (ENSMMNG00015015433) #20	DNAAF10 (ENSMMNG00015015443) #21	C1D (ENSMMNG00015015470) #22	ETAA1 (ENSMMNG00015015495) #23	MEIS1 (ENSMMNG00015015523) #24	ENSMMNG00015015655	SPRED2 (ENSMMNG00015015689) #25	ACTR2 (ENSMMNG00015015753) #27	RAB1A (ENSMMNG00015015848) #28	CEP68 (ENSMMNG00015015909) #29	SLC1A4 (ENSMMNG00015015960) #30	SERTAD2 (ENSMMNG00015016005) #31	AFTPH (ENSMMNG00015016029) #32	LGALSL (ENSMMNG00015016100) #34	PELI1 (ENSMMNG00015016144) #35	VPS54 (ENSMMNG00015016195) #36	ENSMMNG00015009005 #37	PHPT1 (ENSMMNG00015009040)
Vaquita	MODERN SPECIES	4	GFPT1 (ENSPSNG00000019034) #7	ANTXR1 (ENSPSNG00000018795) #8	GKN1 (ENSPSNG00000018548) #9	GKN2 (ENSPSNG00000018430) #10	ENSPSNG00000018367 #11	BMP10 (ENSPSNG00000018330) #12	ARHGAP25 (ENSPSNG00000018111) #13	PROKR1 (ENSPSNG00000018062) #14	APLF (ENSPSNG00000018014) #15	FBXO48 (ENSPSNG00000017972) #16	PLEK (ENSPSNG00000017885) #17	CNRIP1 (ENSPSNG00000017800) #18	PPP3R1 (ENSPSNG00000017608) #19	PNO1 (ENSPSNG00000017552) #20	DNAAF10 (ENSPSNG00000017470) #21	C1D (ENSPSNG00000017424) #22	ETAA1 (ENSPSNG00000017386) #23	MEIS1 (ENSPSNG00000017177) #24	ENSPSNG00000017076	SPRED2 (ENSPSNG00000016931) #25	ACTR2 (ENSPSNG00000016825) #27	RAB1A (ENSPSNG00000016689) #28	CEP68 (ENSPSNG00000016545) #29	SLC1A4 (ENSPSNG00000016415) #30	SERTAD2 (ENSPSNG00000016327) #31	AFTPH (ENSPSNG00000016250) #32	LGALSL (ENSPSNG00000016184) #34	PELI1 (ENSPSNG00000016122) #35	VPS54 (ENSPSNG00000015574) #36	ENSPSNG00000015479	MDH1 (ENSPSNG00000015270)
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	3	ANTXR1 (ENSPCTG00005009423) #8	GKN1 (ENSPCTG00005009330) #9	GKN2 (ENSPCTG00005009224) #10	BMP10 (ENSPCTG00005009185) #12	ARHGAP25 (ENSPCTG00005009007) #13	PROKR1 (ENSPCTG00005008946) #14	ENSPCTG00005008914	APLF (ENSPCTG00005008883) #15	FBXO48 (ENSPCTG00005008864) #16	PLEK (ENSPCTG00005008806) #17	CNRIP1 (ENSPCTG00005008746) #18	PPP3R1 (ENSPCTG00005008639) #19	PNO1 (ENSPCTG00005008568) #20	WDR92 (ENSPCTG00005008494) #21	ENSPCTG00005008480	C1D (ENSPCTG00005008403) #22	ETAA1 (ENSPCTG00005008337) #23	MEIS1 (ENSPCTG00005008167) #24	ENSPCTG00005008130	ENSPCTG00005008120 #26	SPRED2 (ENSPCTG00005008031) #25	ACTR2 (ENSPCTG00005007920) #27	RAB1A (ENSPCTG00005007858) #28	CEP68 (ENSPCTG00005007824) #29	ENSPCTG00005007798 #30	SERTAD2 (ENSPCTG00005007784) #31	AFTPH (ENSPCTG00005007713) #32	LGALSL (ENSPCTG00005007670) #34	ENSPCTG00005007660	PELI1 (ENSPCTG00005007650) #35	VPS54 (ENSPCTG00005007443) #36
Sperm whale	MODERN SPECIES	7														TESMIN (ENSPCTG00005015085)	GAL (ENSPCTG00005014998)	ENSPCTG00005014980 #22	PPP6R3 (ENSPCTG00005014547)	LRP5 (ENSPCTG00005012293)	C16H11orf24 (ENSPCTG00005012094)	KMT5B (ENSPCTG00005012015)	CHKA (ENSPCTG00005011739)	TCIRG1 (ENSPCTG00005011681)	NDUFS8 (ENSPCTG00005011545)	ALDH3B1 (ENSPCTG00005011416)	UNC93B1 (ENSPCTG00005011356)	ENSPCTG00005011272	ENSPCTG00005011240	ENSPCTG00005011185	ENSPCTG00005011165	CLCF1 (ENSPCTG00005011093)	POLD4 (ENSPCTG00005011022)
Pecora	ANCESTRAL SPECIES	5	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Yarkand deer	MODERN SPECIES	2	NFU1 (ENSCHYG00000011141)	GFPT1 (ENSCHYG00000010734) #7	ANTXR1 (ENSCHYG00000010456) #8	GKN1 (ENSCHYG00000010366) #9	GKN2 (ENSCHYG00000010314) #10	ENSCHYG00000010229 #11	BMP10 (ENSCHYG00000010198) #12	ARHGAP25 (ENSCHYG00000009972) #13	PROKR1 (ENSCHYG00000009894) #14	ENSCHYG00000009477 #15	FBXO48 (ENSCHYG00000009420) #16	PLEK (ENSCHYG00000009350) #17	CNRIP1 (ENSCHYG00000009217) #18	PNO1 (ENSCHYG00000009166) #20	ENSCHYG00000008783 #21	C1D (ENSCHYG00000008709) #22	ETAA1 (ENSCHYG00000008673) #23	MEIS1 (ENSCHYG00000008476) #24	ENSCHYG00000008453	SPRED2 (ENSCHYG00000008346) #25	ACTR2 (ENSCHYG00000008112) #27	RAB1A (ENSCHYG00000007988) #28	CEP68 (ENSCHYG00000007916) #29	SLC1A4 (ENSCHYG00000007819) #30	ENSCHYG00000007790	SERTAD2 (ENSCHYG00000007769) #31	ENSCHYG00000007734	AFTPH (ENSCHYG00000007630) #32	LGALSL (ENSCHYG00000007576) #34	ENSCHYG00000007544	PELI1 (ENSCHYG00000007493) #35
Percora_a	ANCESTRAL SPECIES	13	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Siberian musk deer	MODERN SPECIES	240	ANTXR1 (ENSMMSG00000010913) #8	GKN1 (ENSMMSG00000010979) #9	GKN2 (ENSMMSG00000011009) #10	ENSMMSG00000011056 #11	BMP10 (ENSMMSG00000011075) #12	ARHGAP25 (ENSMMSG00000011100) #13	PROKR1 (ENSMMSG00000011183) #14	APLF (ENSMMSG00000011197) #15	FBXO48 (ENSMMSG00000011229) #16	PLEK (ENSMMSG00000011254) #17	CNRIP1 (ENSMMSG00000011305) #18	ENSMMSG00000011356 #19	ENSMMSG00000011434	PNO1 (ENSMMSG00000011455) #20	DNAAF10 (ENSMMSG00000011471) #21	C1D (ENSMMSG00000011514) #22	ENSMMSG00000006279	ENSMMSG00000006311	ETAA1 (ENSMMSG00000006322) #23	MEIS1 (ENSMMSG00000006369) #24	SPRED2 (ENSMMSG00000006652) #25	ACTR2 (ENSMMSG00000006727) #27	ENSMMSG00000006773	RAB1A (ENSMMSG00000006809) #28	CEP68 (ENSMMSG00000006928) #29	SLC1A4 (ENSMMSG00000007010) #30	ENSMMSG00000007124	SERTAD2 (ENSMMSG00000007146) #31	AFTPH (ENSMMSG00000007162) #32	LGALSL (ENSMMSG00000007219) #34	PELI1 (ENSMMSG00000007255) #35
Bovidae	ANCESTRAL SPECIES	5	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Bovinae	ANCESTRAL SPECIES	4	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Bos	ANCESTRAL SPECIES	5	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556.ib #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000011179.o.a
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556.ib #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000011179.o.a
Wild yak	MODERN SPECIES	577															DNAAF10 (ENSBMUG00000020199) #21	C1D (ENSBMUG00000020190) #22	ETAA1 (ENSBMUG00000020179) #23	MEIS1 (ENSBMUG00000020154) #24	SPRED2 (ENSBMUG00000020108) #25	ENSBMUG00000020074 #27	RAB1A (ENSBMUG00000020049) #28	CEP68 (ENSBMUG00000020034) #29	SLC1A4 (ENSBMUG00000019988) #30
Domestic yak	MODERN SPECIES	28	NFU1 (ENSBGRG00000004641)	GFPT1 (ENSBGRG00000004514) #7	ANTXR1 (ENSBGRG00000004323) #8	GKN1 (ENSBGRG00000004227) #9	GKN2 (ENSBGRG00000004175) #10	ENSBGRG00000004101 #11	BMP10 (ENSBGRG00000004060) #12	ARHGAP25 (ENSBGRG00000003917) #13	PROKR1 (ENSBGRG00000003888) #14	APLF (ENSBGRG00000003735) #15	FBXO48 (ENSBGRG00000003679) #16	PLEK (ENSBGRG00000003648) #17	CNRIP1 (ENSBGRG00000003591) #18	PNO1 (ENSBGRG00000003558) #20	DNAAF10 (ENSBGRG00000013337) #21	C1D (ENSBGRG00000013288) #22	ENSBGRG00000013266	ETAA1 (ENSBGRG00000013146) #23	ENSBGRG00000013128	MEIS1 (ENSBGRG00000012913) #24	SPRED2 (ENSBGRG00000012585) #25	ACTR2 (ENSBGRG00000012280) #27	RAB1A (ENSBGRG00000012081) #28	CEP68 (ENSBGRG00000011823) #29	SLC1A4 (ENSBGRG00000011713) #30	SERTAD2 (ENSBGRG00000011678) #31	AFTPH (ENSBGRG00000011500) #32	ENSBGRG00000011374 #34	PELI1 (ENSBGRG00000011236) #35	VPS54 (ENSBGRG00000010687) #36	UGP2 (ENSBGRG00000010367) #37
Bos_b	ANCESTRAL SPECIES	16	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556.ib #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000011179.o.a
Hybrid Bos Indicus	MODERN SPECIES	2	GKN1 (ENSBIXG00005008210) #9	GKN2 (ENSBIXG00005008219) #10	ENSBIXG00005008228 #11	BMP10 (ENSBIXG00005008241) #12	ENSBIXG00005008244	ARHGAP25 (ENSBIXG00005008280) #13	PROKR1 (ENSBIXG00005008293) #14	ENSBIXG00005008303	APLF (ENSBIXG00005008315) #15	FBXO48 (ENSBIXG00005008327) #16	PLEK (ENSBIXG00005008346) #17	ENSBIXG00005008358	ENSBIXG00005000174 #18	PNO1 (ENSBIXG00005000175) #20	DNAAF10 (ENSBIXG00005008434) #21	C1D (ENSBIXG00005000197) #22	ETAA1 (ENSBIXG00005008485) #23	MEIS1 (ENSBIXG00005000216) #24	SPRED2 (ENSBIXG00005000234) #25	ACTR2 (ENSBIXG00005008678) #27	CEP68 (ENSBIXG00005006085) #29	SLC1A4 (ENSBIXG00005008778) #30	ENSBIXG00005008797	RAB1A (ENSBIXG00005000282) #28	SERTAD2 (ENSBIXG00005008870) #31	AFTPH (ENSBIXG00005008912) #32	ENSBIXG00005008944 #34	PELI1 (ENSBIXG00005008978) #35	VPS54 (ENSBIXG00005009062) #36	UGP2 (ENSBIXG00005009159) #37	MDH1 (ENSBIXG00005009206)
Cow	MODERN SPECIES	2	GFPT1 (ENSBTAG00000017626) #7	ANTXR1 (ENSBTAG00000007808) #8	GKN1 (ENSBTAG00000012949) #9	GKN2 (ENSBTAG00000017199) #10	ENSBTAG00000038835 #11	BMP10 (ENSBTAG00000000992) #12	ARHGAP25 (ENSBTAG00000023976) #13	PROKR1 (ENSBTAG00000050333) #14	APLF (ENSBTAG00000018401) #15	FBXO48 (ENSBTAG00000047772) #16	PLEK (ENSBTAG00000009658) #17	CNRIP1 (ENSBTAG00000001408) #18	PPP3R1 (ENSBTAG00000010619) #19	PNO1 (ENSBTAG00000010604) #20	DNAAF10 (ENSBTAG00000010595) #21	C1D (ENSBTAG00000049002) #22	ETAA1 (ENSBTAG00000011727) #23	MEIS1 (ENSBTAG00000008448) #24	SPRED2 (ENSBTAG00000019456) #25	ACTR2 (ENSBTAG00000009761) #27	RAB1A (ENSBTAG00000016720) #28	CEP68 (ENSBTAG00000016717) #29	SLC1A4 (ENSBTAG00000007763) #30	ENSBTAG00000050435	SERTAD2 (ENSBTAG00000049341) #31	AFTPH (ENSBTAG00000009299) #32	LGALSL (ENSBTAG00000055296) #34	ENSBTAG00000053585	PELI1 (ENSBTAG00000020865) #35	VPS54 (ENSBTAG00000000115) #36	UGP2 (ENSBTAG00000000111) #37
American bison	MODERN SPECIES	3132	GFPT1 (ENSBBBG00000016730) #7	ANTXR1 (ENSBBBG00000007995) #8	GKN1 (ENSBBBG00000004096) #9	GKN2 (ENSBBBG00000016594) #10	ENSBBBG00000000743 #11	BMP10 (ENSBBBG00000000758) #12	ARHGAP25 (ENSBBBG00000016580) #13	PROKR1 (ENSBBBG00000008335) #14	APLF (ENSBBBG00000016534) #15	FBXO48 (ENSBBBG00000016515) #16	PLEK (ENSBBBG00000016507) #17	CNRIP1 (ENSBBBG00000016489) #18	PPP3R1 (ENSBBBG00000004071) #19	PNO1 (ENSBBBG00000016461) #20	DNAAF10 (ENSBBBG00000016449) #21	C1D (ENSBBBG00000004066) #22	ENSBBBG00000016408 #23	SIDT1 (ENSBBBG00000004058)	USF3 (ENSBBBG00000016318)	NAA50 (ENSBBBG00000016293)	ATP6V1A (ENSBBBG00000016246)	GRAMD1C (ENSBBBG00000016223)	ZDHHC23 (ENSBBBG00000007081)	CCDC191 (ENSBBBG00000004018)	QTRT2 (ENSBBBG00000004001)	DRD3 (ENSBBBG00000016079)	TIGIT (ENSBBBG00000008552)	ZBTB20 (ENSBBBG00000016026)	GAP43 (ENSBBBG00000003984)	ENSBBBG00000016008	LSAMP (ENSBBBG00000015995)
Caprinae	ANCESTRAL SPECIES	9	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00940000154186.a #32	ENSGT00940000155337.h #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a.i	ENSGT00390000016551
Goat	MODERN SPECIES	2	GFPT1 (ENSCHIG00000021854) #7	ANTXR1 (ENSCHIG00000023428) #8	GKN1 (ENSCHIG00000021005) #9	GKN2 (ENSCHIG00000018418) #10	ENSCHIG00000002541 #11	BMP10 (ENSCHIG00000026064) #12	ARHGAP25 (ENSCHIG00000025694) #13	PROKR1 (ENSCHIG00000015056) #14	APLF (ENSCHIG00000015145) #15	FBXO48 (ENSCHIG00000018110) #16	PLEK (ENSCHIG00000017674) #17	CNRIP1 (ENSCHIG00000017116) #18	PPP3R1 (ENSCHIG00000004688) #19	PNO1 (ENSCHIG00000012839) #20	DNAAF10 (ENSCHIG00000022762) #21	C1D (ENSCHIG00000025729) #22	ETAA1 (ENSCHIG00000027011) #23	MEIS1 (ENSCHIG00000027207) #24	SPRED2 (ENSCHIG00000013086) #25	ENSCHIG00000027162	ACTR2 (ENSCHIG00000014272) #27	RAB1A (ENSCHIG00000014060) #28	CEP68 (ENSCHIG00000025433) #29	SLC1A4 (ENSCHIG00000025336) #30	ENSCHIG00000007620	AFTPH (ENSCHIG00000009404) #32	LGALSL (ENSCHIG00000026638) #34	PELI1 (ENSCHIG00000022027) #35	ENSCHIG00000003100	VPS54 (ENSCHIG00000010990) #36	UGP2 (ENSCHIG00000021810) #37
Rambouillet Sheep	MODERN SPECIES	19	GFPT1 (ENSOARG00020006596) #7	ANTXR1 (ENSOARG00020006876) #8	GKN1 (ENSOARG00020006983) #9	GKN2 (ENSOARG00020007101) #10	ENSOARG00020007185 #11	BMP10 (ENSOARG00020007232) #12	ARHGAP25 (ENSOARG00020007287) #13	APLF (ENSOARG00020007769) #15	PROKR1 (ENSOARG00020007957) #14	FBXO48 (ENSOARG00020007981) #16	PLEK (ENSOARG00020000213) #17	CNRIP1 (ENSOARG00020000300) #18	PPP3R1 (ENSOARG00020000338) #19	PNO1 (ENSOARG00020000405) #20	DNAAF10 (ENSOARG00020000424) #21	C1D (ENSOARG00020000448) #22	ETAA1 (ENSOARG00020000471) #23	MEIS1 (ENSOARG00020000528) #24	ENSOARG00020000610	SPRED2 (ENSOARG00020000634) #25	ACTR2 (ENSOARG00020000701) #27	ENSOARG00020000747	RAB1A (ENSOARG00020000781) #28	SLC1A4 (ENSOARG00020000870) #30	ENSOARG00020000886	SERTAD2 (ENSOARG00020000894) #31	LGALSL (ENSOARG00020000922) #34	PELI1 (ENSOARG00020000937) #35	ENSOARG00020000952	VPS54 (ENSOARG00020000984) #36	UGP2 (ENSOARG00020001100) #37
Camelidae	ANCESTRAL SPECIES	12	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Alpaca	MODERN SPECIES	903													PPP3R1 (ENSVPAG00000015522) #19	PNO1 (ENSVPAG00000012083) #20	DNAAF10 (ENSVPAG00000012082) #21	C1D (ENSVPAG00000012080) #22	ETAA1 (ENSVPAG00000012078) #23
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	6	GFPT1 (ENSCDRG00005008607) #7	ANTXR1 (ENSCDRG00005008451) #8	GKN1 (ENSCDRG00005008384) #9	GKN2 (ENSCDRG00005008314) #10	ENSCDRG00005008263 #11	BMP10 (ENSCDRG00005008228) #12	ARHGAP25 (ENSCDRG00005008103) #13	PROKR1 (ENSCDRG00005008059) #14	APLF (ENSCDRG00005007995) #15	FBXO48 (ENSCDRG00005007956) #16	PLEK (ENSCDRG00005007914) #17	CNRIP1 (ENSCDRG00005007885) #18	PPP3R1 (ENSCDRG00005007714) #19	PNO1 (ENSCDRG00005007641) #20	DNAAF10 (ENSCDRG00005007600) #21	C1D (ENSCDRG00005007559) #22	ETAA1 (ENSCDRG00005007526) #23	ENSCDRG00005007509	MEIS1 (ENSCDRG00005006803) #24	SPRED2 (ENSCDRG00005006696) #25	ACTR2 (ENSCDRG00005006571) #27	RAB1A (ENSCDRG00005006403) #28	CEP68 (ENSCDRG00005006344) #29	SLC1A4 (ENSCDRG00005006273) #30	AFTPH (ENSCDRG00005006174) #32	LGALSL (ENSCDRG00005006106) #34	PELI1 (ENSCDRG00005006069) #35	VPS54 (ENSCDRG00005005842) #36	UGP2 (ENSCDRG00005005735) #37	MDH1 (ENSCDRG00005005489)	WDPCP (ENSCDRG00005005228)
Arabian camel	MODERN SPECIES	11	FGF5 (ENSCDRG00005002376)	CFAP299 (ENSCDRG00005002389)	BMP3 (ENSCDRG00005002412)	PRKG2 (ENSCDRG00005002430)	RASGEF1B (ENSCDRG00005002503)	HNRNPD (ENSCDRG00005002738)	HNRNPDL (ENSCDRG00005002963)	ENOPH1 (ENSCDRG00005003055)	TMEM150C (ENSCDRG00005003088)	SCD5 (ENSCDRG00005003107)	SEC31A (ENSCDRG00005003191)	THAP9 (ENSCDRG00005003500)	LIN54 (ENSCDRG00005003557)	COPS4 (ENSCDRG00005003685)	PLAC8 (ENSCDRG00005003743)	ENSCDRG00005003768 #22	ENSCDRG00005003781	COQ2 (ENSCDRG00005003800)	HPSE (ENSCDRG00005003833)	HELQ (ENSCDRG00005004047)	MRPS18C (ENSCDRG00005004460)	ABRAXAS1 (ENSCDRG00005004488)	GPAT3 (ENSCDRG00005004508)	ENSCDRG00005004525	ENSCDRG00005004541	CDS1 (ENSCDRG00005004562)	WDFY3 (ENSCDRG00005004624)	ENSCDRG00005005241	ARHGAP24 (ENSCDRG00005005261) ##13	MAPK10 (ENSCDRG00005005394)	PTPN13 (ENSCDRG00005005955)
Suina	ANCESTRAL SPECIES	13	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Chacoan peccary	MODERN SPECIES	777	GFPT1 (ENSCWAG00000017830) #7	ANTXR1 (ENSCWAG00000017786) #8	GKN1 (ENSCWAG00000017744) #9	GKN2 (ENSCWAG00000017675) #10	ENSCWAG00000017631 #11	BMP10 (ENSCWAG00000017602) #12	ARHGAP25 (ENSCWAG00000017415) #13	PROKR1 (ENSCWAG00000017385) #14	APLF (ENSCWAG00000017353) #15	FBXO48 (ENSCWAG00000017325) #16	PLEK (ENSCWAG00000017263) #17	CNRIP1 (ENSCWAG00000017220) #18	PPP3R1 (ENSCWAG00000017182) #19	PNO1 (ENSCWAG00000017164) #20	DNAAF10 (ENSCWAG00000017128) #21	C1D (ENSCWAG00000017088) #22	ETAA1 (ENSCWAG00000017059) #23	MEIS1 (ENSCWAG00000016382) #24	SPRED2 (ENSCWAG00000016216) #25	ENSCWAG00000016192	ACTR2 (ENSCWAG00000016124) #27	ENSCWAG00000016093	RAB1A (ENSCWAG00000016000) #28	CEP68 (ENSCWAG00000015895) #29	SLC1A4 (ENSCWAG00000015836) #30	SERTAD2 (ENSCWAG00000015818) #31	AFTPH (ENSCWAG00000015787) #32	LGALSL (ENSCWAG00000015689) #34	PELI1 (ENSCWAG00000015638) #35	VPS54 (ENSCWAG00000015086) #36	UGP2 (ENSCWAG00000014887) #37
Pig	DUPLICATION
Pig	MODERN SPECIES	11	GFPT1 (ENSSSCG00000008339) #7	ANTXR1 (ENSSSCG00000008340) #8	GKN1 (ENSSSCG00000035529) #9	GKN2 (ENSSSCG00000038802) #10	GKN3 (ENSSSCG00000037028) #11	BMP10 (ENSSSCG00000032071) #12	ARHGAP25 (ENSSSCG00000008344) #13	PROKR1 (ENSSSCG00000038148) #14	APLF (ENSSSCG00000008346) #15	FBXO48 (ENSSSCG00000008347) #16	PLEK (ENSSSCG00000008348) #17	CNRIP1 (ENSSSCG00000008349) #18	PPP3R1 (ENSSSCG00000036115) #19	PNO1 (ENSSSCG00000008352) #20	DNAAF10 (ENSSSCG00000008353) #21	C1D (ENSSSCG00000039331) #22	ETAA1 (ENSSSCG00000023908) #23	MEIS1 (ENSSSCG00000039161) #24	ENSSSCG00000044348	SPRED2 (ENSSSCG00000008357) #25	ACTR2 (ENSSSCG00000008358) #27	RAB1A (ENSSSCG00000008359) #28	CEP68 (ENSSSCG00000008360) #29	SLC1A4 (ENSSSCG00000028282) #30	SERTAD2 (ENSSSCG00000037002) #31	AFTPH (ENSSSCG00000008363) #32	LGALSL (ENSSSCG00000030005) #34	PELI1 (ENSSSCG00000028947) #35	VPS54 (ENSSSCG00000027509) #36	UGP2 (ENSSSCG00000008368) #37	MDH1 (ENSSSCG00000025751)
Pig	MODERN SPECIES	10	MRPL16 (ENSSSCG00000013118)	CBLIF (ENSSSCG00000013117)	TCN1 (ENSSSCG00000039252)	OOSP3 (ENSSSCG00000048002)	ENSSSCG00000061888	ENSSSCG00000055543	OOSP2 (ENSSSCG00000039560)	MS4A2 (ENSSSCG00000034506)	ENSSSCG00000013100	ENSSSCG00000041746	ENSSSCG00000051873	MS4A7 (ENSSSCG00000013102)	ENSSSCG00000022114	MS4A5 (ENSSSCG00000026796)	MS4A1 (ENSSSCG00000021812)	ENSSSCG00000035701 #22	MS4A12 (ENSSSCG00000027387)	MS4A13 (ENSSSCG00000032893)	ENSSSCG00000057843	ENSSSCG00000031637	MS4A8 (ENSSSCG00000030879)	MS4A15 (ENSSSCG00000034847)	MS4A10 (ENSSSCG00000037987)	CCDC86 (ENSSSCG00000013105)	PTGDR2 (ENSSSCG00000013106)	PRPF19 (ENSSSCG00000013107)	TMEM109 (ENSSSCG00000013110)	TMEM132A (ENSSSCG00000013113)	SLC15A3 (ENSSSCG00000013114)	CD6 (ENSSSCG00000013111)	CD5 (ENSSSCG00000013115)
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	4	ANTXR1 (ENSRFEG00010015883) #8	GKN1 (ENSRFEG00010006208) #9	GKN2 (ENSRFEG00010006314) #10	ENSRFEG00010006363 #11	BMP10 (ENSRFEG00010006382) #12	ENSRFEG00010006412	ARHGAP25 (ENSRFEG00010006451) #13	PROKR1 (ENSRFEG00010006533) #14	APLF (ENSRFEG00010006577) #15	FBXO48 (ENSRFEG00010006636) #16	PLEK (ENSRFEG00010006661) #17	CNRIP1 (ENSRFEG00010006735) #18	PPP3R1 (ENSRFEG00010006792) #19	PNO1 (ENSRFEG00010006896) #20	DNAAF10 (ENSRFEG00010006949) #21	ENSRFEG00010007018 #22	ETAA1 (ENSRFEG00010007107) #23	MEIS1 (ENSRFEG00010007165) #24	ENSRFEG00010007383	SPRED2 (ENSRFEG00010007454) #25	ACTR2 (ENSRFEG00010007536) #27	ENSRFEG00010007617	RAB1A (ENSRFEG00010007659) #28	CEP68 (ENSRFEG00010007746) #29	SLC1A4 (ENSRFEG00010007793) #30	SERTAD2 (ENSRFEG00010007864) #31	AFTPH (ENSRFEG00010007890) #32	LGALSL (ENSRFEG00010007948) #34	PELI1 (ENSRFEG00010008007) #35	VPS54 (ENSRFEG00010008048) #36	UGP2 (ENSRFEG00010008438) #37
Greater horseshoe bat	MODERN SPECIES	3	ENSRFEG00010015952	ENSRFEG00010016000	ENSRFEG00010016078	ENSRFEG00010016089	ENSRFEG00010016120	ABCA1 (ENSRFEG00010016169)	SLC44A1 (ENSRFEG00010016269)	ENSRFEG00010016774	FSD1L (ENSRFEG00010016824)	FKTN (ENSRFEG00010016923)	TAL2 (ENSRFEG00010017010)	TMEM38B (ENSRFEG00010017023)	ENSRFEG00010017124	ZNF462 (ENSRFEG00010017189)	RAD23B (ENSRFEG00010017264)	ENSRFEG00010017423 #22	KLF4 (ENSRFEG00010017439)	ACTL7B (ENSRFEG00010017556)	ACTL7A (ENSRFEG00010017577)	ELP1 (ENSRFEG00010017609)	ABITRAM (ENSRFEG00010017721)	CTNNAL1 (ENSRFEG00010017765)	TMEM245 (ENSRFEG00010017866)	FRRS1L (ENSRFEG00010017957)	EPB41L4B (ENSRFEG00010018038)	PTPN3 (ENSRFEG00010018189)	ENSRFEG00010018409	PALM2AKAP2 (ENSRFEG00010018553)	C9orf152 (ENSRFEG00010018639)	ENSRFEG00010018690	ENSRFEG00010018766
Greater horseshoe bat	MODERN SPECIES	1	CNOT2 (ENSRFEG00010003667)	ENSRFEG00010003596	MYRFL (ENSRFEG00010003520)	RAB3IP (ENSRFEG00010003411)	BEST3 (ENSRFEG00010003349)	LRRC10 (ENSRFEG00010003298)	CCT2 (ENSRFEG00010003244)	FRS2 (ENSRFEG00010003207)	YEATS4 (ENSRFEG00010003171)	ENSRFEG00010003140	CPSF6 (ENSRFEG00010003087)	CPM (ENSRFEG00010003042)	ENSRFEG00010002867	ENSRFEG00010002741	SLC35E3 (ENSRFEG00010002724)	ENSRFEG00010002704 #22	NUP107 (ENSRFEG00010002607)	ENSRFEG00010002535	MDM1 (ENSRFEG00010002451)	IL22 (ENSRFEG00010002409)	IL26 (ENSRFEG00010002390)	ENSRFEG00010002377	IFNG (ENSRFEG00010002364)	DYRK2 (ENSRFEG00010002341)	CAND1 (ENSRFEG00010002314)	GRIP1 (ENSRFEG00010002241)	HELB (ENSRFEG00010002170)	IRAK3 (ENSRFEG00010002100)	TMBIM4 (ENSRFEG00010002041)	LLPH (ENSRFEG00010002004)	HMGA2 (ENSRFEG00010001959)
Microbat	DUPLICATION
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1045	GKN2 (ENSMLUG00000003667) #10	ENSMLUG00000029487 #11	BMP10 (ENSMLUG00000003664) #12	ARHGAP25 (ENSMLUG00000003661) #13	PROKR1 (ENSMLUG00000003660) #14	APLF (ENSMLUG00000005287) #15	FBXO48 (ENSMLUG00000016516) #16	PLEK (ENSMLUG00000016505) #17	CNRIP1 (ENSMLUG00000029512) #18	ENSMLUG00000010807 #21	ENSMLUG00000023760	PNO1 (ENSMLUG00000010850) #20	ENSMLUG00000029561	ENSMLUG00000010802	ENSMLUG00000024867	ENSMLUG00000010791 #22	ETAA1 (ENSMLUG00000011619) #23	ENSMLUG00000005308	MEIS1 (ENSMLUG00000004906) #24	ENSMLUG00000028961
Microbat	MODERN SPECIES	86																ENSMLUG00000024947 #22
Microbat	MODERN SPECIES	1784																ENSMLUG00000029990 #22	DPPA2 (ENSMLUG00000007444)	DPPA4 (ENSMLUG00000016423)
Megabat	MODERN SPECIES	3065												CNRIP1 (ENSPVAG00000012697) #18	PPP3R1 (ENSPVAG00000024205) #19	PNO1 (ENSPVAG00000012695) #20	DNAAF10 (ENSPVAG00000012693) #21	C1D (ENSPVAG00000012692) #22
Equus	ANCESTRAL SPECIES	7	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Horse	MODERN SPECIES	6	GFPT1 (ENSECAG00000019938) #7	ANTXR1 (ENSECAG00000007023) #8	GKN2 (ENSECAG00000024120) #10	GKN1 (ENSECAG00000023106) #9	ENSECAG00000006757 #11	BMP10 (ENSECAG00000007670) #12	ARHGAP25 (ENSECAG00000009153) #13	PROKR1 (ENSECAG00000031648) #14	ENSECAG00000028191	APLF (ENSECAG00000013246) #15	FBXO48 (ENSECAG00000018966) #16	PLEK (ENSECAG00000018996) #17	PPP3R1 (ENSECAG00000009627) #19	PNO1 (ENSECAG00000011263) #20	ENSECAG00000057082	C1D (ENSECAG00000002187) #22	ETAA1 (ENSECAG00000006358) #23	MEIS1 (ENSECAG00000009387) #24	SPRED2 (ENSECAG00000005881) #25	ACTR2 (ENSECAG00000009219) #27	RAB1A (ENSECAG00000009926) #28	CEP68 (ENSECAG00000009985) #29	SLC1A4 (ENSECAG00000011229) #30	SERTAD2 (ENSECAG00000040555) #31	AFTPH (ENSECAG00000012175) #32	LGALSL (ENSECAG00000018099) #34	PELI1 (ENSECAG00000021804) #35	VPS54 (ENSECAG00000022920) #36	UGP2 (ENSECAG00000016705) #37	WDPCP (ENSECAG00000019956)	MDH1 (ENSECAG00000010849)
Donkey	MODERN SPECIES	26	GFPT1 (ENSEASG00005007343) #7	ANTXR1 (ENSEASG00005007337) #8	GKN1 (ENSEASG00005007330) #9	GKN2 (ENSEASG00005007325) #10	ENSEASG00005007322 #11	BMP10 (ENSEASG00005036298) #12	ARHGAP25 (ENSEASG00005007316) #13	PROKR1 (ENSEASG00005028856) #14	APLF (ENSEASG00005007314) #15	FBXO48 (ENSEASG00005007313) #16	PLEK (ENSEASG00005007312) #17	CNRIP1 (ENSEASG00005030124) #18	ENSEASG00005007310 #19	PNO1 (ENSEASG00005007309) #20	DNAAF10 (ENSEASG00005007308) #21	C1D (ENSEASG00005033257) #22	ETAA1 (ENSEASG00005007305) #23	MEIS1 (ENSEASG00005007304) #24	SPRED2 (ENSEASG00005027956) #25	ACTR2 (ENSEASG00005007299) #27	RAB1A (ENSEASG00005034669) #28	CEP68 (ENSEASG00005007297) #29	SLC1A4 (ENSEASG00005007296) #30	ENSEASG00005035148	SERTAD2 (ENSEASG00005026993) #31	AFTPH (ENSEASG00005007290) #32	LGALSL (ENSEASG00005007283) #34	PELI1 (ENSEASG00005007279) #35	VPS54 (ENSEASG00005007268) #36	UGP2 (ENSEASG00005007264) #37	MDH1 (ENSEASG00005007262)
Carnivora	ANCESTRAL SPECIES	19	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Caniformia	ANCESTRAL SPECIES	18	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Canidae	ANCESTRAL SPECIES	10	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00390000017839.o.a	ENSGT00940000156327 #24	ENSGT00950000183164.E.c.b.b	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00950000183010.a.a.a.a.c.b.d.a.a	ENSGT00390000009597 #23	ENSGT00390000017839.o.a	ENSGT00940000156327 #24	ENSGT00950000183164.E.c.b.b	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00390000017004.a.a.q.a	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35
Dingo	MODERN SPECIES	307	NFU1 (ENSCAFG00020000713)	GFPT1 (ENSCAFG00020000705) #7	ANTXR1 (ENSCAFG00020000433) #8	GKN1 (ENSCAFG00020000316) #9	GKN2 (ENSCAFG00020000261) #10	BMP10 (ENSCAFG00020000180) #12	ARHGAP25 (ENSCAFG00020000168) #13	PROKR1 (ENSCAFG00020000143) #14	APLF (ENSCAFG00020000129) #15	FBXO48 (ENSCAFG00020000114) #16	PLEK (ENSCAFG00020000109) #17	CNRIP1 (ENSCAFG00020000090) #18	PPP3R1 (ENSCAFG00020027004) #19	PNO1 (ENSCAFG00020027002) #20	DNAAF10 (ENSCAFG00020026999) #21	C1D (ENSCAFG00020026997) #22	ENSCAFG00020026995	ETAA1 (ENSCAFG00020026994) #23	ENSCAFG00020026992	MEIS1 (ENSCAFG00020026989) #24	ENSCAFG00020026987	ENSCAFG00020026985	SPRED2 (ENSCAFG00020026983) #25	ENSCAFG00020026981	ACTR2 (ENSCAFG00020026978) #27	ENSCAFG00020026973	RAB1A (ENSCAFG00020026971) #28	CEP68 (ENSCAFG00020026969) #29	SLC1A4 (ENSCAFG00020026962) #30	AFTPH (ENSCAFG00020026953) #32	LGALSL (ENSCAFG00020026947) #34
Dog	MODERN SPECIES	1	NFU1 (ENSCAFG00845025447)	GFPT1 (ENSCAFG00845024744) #7	ANTXR1 (ENSCAFG00845024244) #8	GKN1 (ENSCAFG00845024000) #9	GKN2 (ENSCAFG00845023893) #10	BMP10 (ENSCAFG00845023837) #12	ARHGAP25 (ENSCAFG00845023650) #13	PROKR1 (ENSCAFG00845023574) #14	APLF (ENSCAFG00845023524) #15	FBXO48 (ENSCAFG00845023484) #16	PLEK (ENSCAFG00845023363) #17	CNRIP1 (ENSCAFG00845023282) #18	PPP3R1 (ENSCAFG00845022977) #19	PNO1 (ENSCAFG00845022894) #20	WDR92 (ENSCAFG00845022818) #21	WDR92 (ENSCAFG00845022766) #22	ENSCAFG00845022735	ETAA1 (ENSCAFG00845022577) #23	ENSCAFG00845022346	MEIS1 (ENSCAFG00845022164) #24	ENSCAFG00845022112	SPRED2 (ENSCAFG00845022023) #25	ACTR2 (ENSCAFG00845021843) #27	ENSCAFG00845021409	ENSCAFG00845021343	RAB1A (ENSCAFG00845021139) #28	CEP68 (ENSCAFG00845021026) #29	SLC1A4 (ENSCAFG00845020925) #30	AFTPH (ENSCAFG00845020600) #32	ENSCAFG00845020543	LGALSL (ENSCAFG00845020462) #34
Red fox	MODERN SPECIES	141	NFU1 (ENSVVUG00000027818)	GFPT1 (ENSVVUG00000027815) #7	ANTXR1 (ENSVVUG00000027689) #8	GKN1 (ENSVVUG00000027676) #9	GKN2 (ENSVVUG00000027671) #10	BMP10 (ENSVVUG00000027668) #12	ARHGAP25 (ENSVVUG00000027661) #13	PROKR1 (ENSVVUG00000027657) #14	APLF (ENSVVUG00000027649) #15	FBXO48 (ENSVVUG00000027647) #16	PLEK (ENSVVUG00000027643) #17	ENSVVUG00000027638	PPP3R1 (ENSVVUG00000027635) #19	PNO1 (ENSVVUG00000027634) #20	WDR92 (ENSVVUG00000027632) #21	C1D (ENSVVUG00000027629) #22	ETAA1 (ENSVVUG00000027624) #23	ENSVVUG00000027618	MEIS1 (ENSVVUG00000027610) #24	ENSVVUG00000027601	SPRED2 (ENSVVUG00000027600) #25	ACTR2 (ENSVVUG00000027598) #27	ENSVVUG00000027596	ENSVVUG00000027593	ENSVVUG00000027592	RAB1A (ENSVVUG00000027588) #28	CEP68 (ENSVVUG00000027585) #29	SLC1A4 (ENSVVUG00000027576) #30
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Mustelinae	ANCESTRAL SPECIES	16	ENSGT00940000155968	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Ferret	MODERN SPECIES	169	AAK1 (ENSMPUG00000006715)	ENSMPUG00000006663	GFPT1 (ENSMPUG00000006393) #7	ANTXR1 (ENSMPUG00000006376) #8	GKN1 (ENSMPUG00000006333) #9	GKN2 (ENSMPUG00000006320) #10	BMP10 (ENSMPUG00000006313) #12	ARHGAP25 (ENSMPUG00000006303) #13	PROKR1 (ENSMPUG00000006297) #14	APLF (ENSMPUG00000006285) #15	PLEK (ENSMPUG00000006274) #17	CNRIP1 (ENSMPUG00000006263) #18	PPP3R1 (ENSMPUG00000006250) #19	ENSMPUG00000006244 #20	DNAAF10 (ENSMPUG00000006235) #21	C1D (ENSMPUG00000006224) #22	ETAA1 (ENSMPUG00000006214) #23	MEIS1 (ENSMPUG00000006198) #24	SPRED2 (ENSMPUG00000006186) #25	ACTR2 (ENSMPUG00000006176) #27	RAB1A (ENSMPUG00000006139) #28	CEP68 (ENSMPUG00000006108) #29	SLC1A4 (ENSMPUG00000006098) #30	ENSMPUG00000006094	ENSMPUG00000006090	SERTAD2 (ENSMPUG00000018821) #31	AFTPH (ENSMPUG00000006081) #32	LGALSL (ENSMPUG00000006075) #34	ENSMPUG00000006072	PELI1 (ENSMPUG00000006068) #35	VPS54 (ENSMPUG00000006057) #36
American mink	MODERN SPECIES	360				GKN1 (ENSNVIG00000018290) #9	GKN2 (ENSNVIG00000018267) #10	BMP10 (ENSNVIG00000018262) #12	RHG25 (ENSNVIG00000018233) #13	PROKR1 (ENSNVIG00000018226) #14	ENSNVIG00000018224	ENSNVIG00000018217 #15	PLEK (ENSNVIG00000018184) #17	CNRP1 (ENSNVIG00000018162) #18	PPP3R1 (ENSNVIG00000018135) #19	ENSNVIG00000018125 #20	DNAAF10 (ENSNVIG00000018094) #21	C1D (ENSNVIG00000018063) #22	ETAA1 (ENSNVIG00000018016) #23
Ursidae	ANCESTRAL SPECIES	9	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c.x #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a.p
Giant Panda	MODERN SPECIES	14	NFU1 (ENSAMEG00000016216)	GFPT1 (ENSAMEG00000016228) #7	ANTXR1 (ENSAMEG00000014069) #8	GKN1 (ENSAMEG00000014101) #9	GKN2 (ENSAMEG00000014107) #10	BMP10 (ENSAMEG00000014110) #12	ARHGAP25 (ENSAMEG00000000374) #13	PROKR1 (ENSAMEG00000027677) #14	APLF (ENSAMEG00000000409) #15	ENSAMEG00000029506 #16	PLEK (ENSAMEG00000004920) #17	CNRIP1 (ENSAMEG00000004912) #18	PPP3R1 (ENSAMEG00000027372) #19	PNO1 (ENSAMEG00000004897) #20	DNAAF10 (ENSAMEG00000004868) #21	C1D (ENSAMEG00000004859) #22	ETAA1 (ENSAMEG00000015785) #23	MEIS1 (ENSAMEG00000015779) #24	ENSAMEG00000029782	ENSAMEG00000015767 #25	ENSAMEG00000015749 #27	ENSAMEG00000024763	ENSAMEG00000031136	RAB1A (ENSAMEG00000026261) #28	CEP68 (ENSAMEG00000001121) #29	SLC1A4 (ENSAMEG00000001092) #30	SERTAD2 (ENSAMEG00000028964) #31	AFTPH (ENSAMEG00000001080) #32	LGALSL (ENSAMEG00000027975) #34	PELI1 (ENSAMEG00000001167) #35	ENSAMEG00000027202
Ursus	ANCESTRAL SPECIES	20	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c.x #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a.p	ENSGT00390000009819.a.a.o
American black bear	MODERN SPECIES	3020																C1D (ENSUAMG00000025246) #22
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	223	NFU1 (ENSUMAG00000021254)	GFPT1 (ENSUMAG00000021249) #7	ANTXR1 (ENSUMAG00000021191) #8	GKN1 (ENSUMAG00000021176) #9	GKN2 (ENSUMAG00000021173) #10	BMP10 (ENSUMAG00000021172) #12	ARHGAP25 (ENSUMAG00000021168) #13	PROKR1 (ENSUMAG00000021155) #14	APLF (ENSUMAG00000021151) #15	FBXO48 (ENSUMAG00000021148) #16	PLEK (ENSUMAG00000021146) #17	CNRIP1 (ENSUMAG00000021144) #18	PPP3R1 (ENSUMAG00000021129) #19	PNO1 (ENSUMAG00000021126) #20	DNAAF10 (ENSUMAG00000021123) #21	C1D (ENSUMAG00000021118) #22	ETAA1 (ENSUMAG00000021106) #23	MEIS1 (ENSUMAG00000021098) #24	SPRED2 (ENSUMAG00000021053) #25	ACTR2 (ENSUMAG00000021042) #27	ENSUMAG00000021041	RAB1A (ENSUMAG00000021038) #28	CEP68 (ENSUMAG00000021035) #29	SLC1A4 (ENSUMAG00000021032) #30	ENSUMAG00000021019	AFTPH (ENSUMAG00000021014) #32	LGALSL (ENSUMAG00000021007) #34	PELI1 (ENSUMAG00000021002) #35	VPS54 (ENSUMAG00000020982) #36	UGP2 (ENSUMAG00000020975) #37	MDH1 (ENSUMAG00000020965)
Polar bear	MODERN SPECIES	170	SRSF11 (ENSUMAG00000006618)	ANKRD13C (ENSUMAG00000006610)	CTH (ENSUMAG00000006601)	ENSUMAG00000006594	PTGER3 (ENSUMAG00000006569)	ZRANB2 (ENSUMAG00000006559)	ENSUMAG00000006557	NEGR1 (ENSUMAG00000006553)	ENSUMAG00000006534	FPGT (ENSUMAG00000006532)	ENSUMAG00000006528	TNNI3K (ENSUMAG00000006497)	ENSUMAG00000006473	CRYZ (ENSUMAG00000006464)	TYW3 (ENSUMAG00000006460)	ENSUMAG00000006451 #22	LHX8 (ENSUMAG00000006438)	SLC44A5 (ENSUMAG00000006391)	ENSUMAG00000006369	ENSUMAG00000006364	RABGGTB (ENSUMAG00000006348)	ENSUMAG00000006342	MSH4 (ENSUMAG00000006298)	ASB17 (ENSUMAG00000006293)	ENSUMAG00000006290	ENSUMAG00000006285	ST6GALNAC5 (ENSUMAG00000006283)	PIGK (ENSUMAG00000006280)	AK5 (ENSUMAG00000006235)	ZZZ3 (ENSUMAG00000006219)	USP33 (ENSUMAG00000006203)
Felidae	DUPLICATION
Felidae	DUPLICATION
Felidae	ANCESTRAL SPECIES	3	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00390000008279.a.g.b	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.o.a #22	ENSGT00390000016292.i.a.f	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00950000183164.E.c.b.b	ENSGT00390000004856.w.a.a.b.b.a.b.b.a	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34
Cat	MODERN SPECIES	2	GFPT1 (ENSFCAG00000007598) #7	ANTXR1 (ENSFCAG00000007597) #8	GKN1 (ENSFCAG00000007596) #9	GKN2 (ENSFCAG00000031999) #10	ENSFCAG00000038235 #12	ARHGAP25 (ENSFCAG00000007595) #13	ENSFCAG00000028283	PROKR1 (ENSFCAG00000040150) #14	APLF (ENSFCAG00000022636) #15	FBXO48 (ENSFCAG00000033588) #16	PLEK (ENSFCAG00000009426) #17	ENSFCAG00000052333	PPP3R1 (ENSFCAG00000033294) #19	PNO1 (ENSFCAG00000041028) #20	DNAAF10 (ENSFCAG00000027122) #21	C1D (ENSFCAG00000028933) #22	ENSFCAG00000028962	ETAA1 (ENSFCAG00000026219) #23	MEIS1 (ENSFCAG00000036549) #24	ENSFCAG00000037094	ENSFCAG00000028286	SPRED2 (ENSFCAG00000004962) #25	ENSFCAG00000051060	ACTR2 (ENSFCAG00000004960) #27	ENSFCAG00000014868	RAB1A (ENSFCAG00000002536) #28	CEP68 (ENSFCAG00000030849) #29	SLC1A4 (ENSFCAG00000001506) #30	SERTAD2 (ENSFCAG00000002492) #31	AFTPH (ENSFCAG00000028719) #32	ENSFCAG00000045546 #34
Panthera	ANCESTRAL SPECIES	2	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00390000008279.a.g.b	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00940000163647	ENSGT00940000166021	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.o.a #22	ENSGT00390000016292.i.a.f	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00950000183164.E.c.b.b	ENSGT00390000004856.w.a.a.b.b.a.b.b.a	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337.f #34	ENSGT00950000183050.b.b.a #35
Tiger	MODERN SPECIES	184	GFPT1 (ENSPTIG00000012830) #7	ANTXR1 (ENSPTIG00000008417) #8	GKN1 (ENSPTIG00000007559) #9	GKN2 (ENSPTIG00000006248) #10	BMP10 (ENSPTIG00000005877) #12	ARHGAP25 (ENSPTIG00000018750) #13	PROKR1 (ENSPTIG00000018114) #14	APLF (ENSPTIG00000016997) #15	FBXO48 (ENSPTIG00000016831) #16	PLEK (ENSPTIG00000016072) #17	CNRIP1 (ENSPTIG00000015693) #18	ENSPTIG00000015180	PPP3R1 (ENSPTIG00000012344) #19	PNO1 (ENSPTIG00000011738) #20	DNAAF10 (ENSPTIG00000011069) #21	C1D (ENSPTIG00000009414) #22
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00390000008279.a.g.b	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00940000163647	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.o.a #22	ENSGT00390000016292.i.a.f	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00950000183164.E.c.b.b	ENSGT00390000004856.w.a.a.b.b.a.b.b.a	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000164277	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337.f #34
lion	MODERN SPECIES	3	ENSPLOG00000013289	GKN1 (ENSPLOG00000013345) #9	GKN2 (ENSPLOG00000013504) #10	BMP10 (ENSPLOG00000013596) #12	ARHGAP25 (ENSPLOG00000013647) #13	ENSPLOG00000013777	PROKR1 (ENSPLOG00000013815) #14	APLF (ENSPLOG00000013862) #15	FBXO48 (ENSPLOG00000013995) #16	PLEK (ENSPLOG00000014035) #17	CNRIP1 (ENSPLOG00000014131) #18	PPP3R1 (ENSPLOG00000014231) #19	ENSPLOG00000014345	PNO1 (ENSPLOG00000014368) #20	DNAAF10 (ENSPLOG00000014401) #21	C1D (ENSPLOG00000014545) #22	ENSPLOG00000014602	ETAA1 (ENSPLOG00000014630) #23	MEIS1 (ENSPLOG00000014760) #24	ENSPLOG00000015010	SPRED2 (ENSPLOG00000015039) #25	ACTR2 (ENSPLOG00000015113) #27	ENSPLOG00000015344	RAB1A (ENSPLOG00000015420) #28	CEP68 (ENSPLOG00000015547) #29	SLC1A4 (ENSPLOG00000015581) #30	SERTAD2 (ENSPLOG00000000111) #31	AFTPH (ENSPLOG00000000129) #32	LGALSL (ENSPLOG00000000160) #34	PELI1 (ENSPLOG00000000230) #35	VPS54 (ENSPLOG00000000305) #36
leopard	MODERN SPECIES		ANTXR1 (ENSPPRG00000013382) #8	GKN1 (ENSPPRG00000013467) #9	GKN2 (ENSPPRG00000013545) #10	BMP10 (ENSPPRG00000013696) #12	ARHGAP25 (ENSPPRG00000014076) #13	ENSPPRG00000014131	PROKR1 (ENSPPRG00000014304) #14	APLF (ENSPPRG00000014711) #15	FBXO48 (ENSPPRG00000014760) #16	PLEK (ENSPPRG00000014845) #17	CNRIP1 (ENSPPRG00000014986) #18	ENSPPRG00000015005	PPP3R1 (ENSPPRG00000015164) #19	PNO1 (ENSPPRG00000015494) #20	DNAAF10 (ENSPPRG00000015515) #21	ENSPPRG00000017045 #22	ENSPPRG00000020640	ETAA1 (ENSPPRG00000017171) #23	MEIS1 (ENSPPRG00000018537) #24	ENSPPRG00000020658	ENSPPRG00000020632	SPRED2 (ENSPPRG00000020675) #25	ACTR2 (ENSPPRG00000020870) #27	ENSPPRG00000021550	RAB1A (ENSPPRG00000025077) #28	CEP68 (ENSPPRG00000025073) #29	SLC1A4 (ENSPPRG00000025070) #30	SERTAD2 (ENSPPRG00000020703) #31	ENSPPRG00000025068	AFTPH (ENSPPRG00000025039) #32	ENSPPRG00000025036 #34
Felidae	ANCESTRAL SPECIES																	ENSGT00390000015405.o.b #22
Panthera	ANCESTRAL SPECIES																	ENSGT00390000015405.o.b #22
Panthera_a	ANCESTRAL SPECIES																	ENSGT00390000015405.o.b #22
leopard	MODERN SPECIES	16	SRSF11 (ENSPPRG00000002720)	ANKRD13C (ENSPPRG00000003766)	CTH (ENSPPRG00000005228)	PTGER3 (ENSPPRG00000007485)	ZRANB2 (ENSPPRG00000008962)	NEGR1 (ENSPPRG00000010074)	ENSPPRG00000017420	ENSPPRG00000013198	FPGT (ENSPPRG00000013879)	LRRC53 (ENSPPRG00000014287)	TNNI3K (ENSPPRG00000015003)	ENSPPRG00000015493	ENSPPRG00000022348	ENSPPRG00000023826	TYW3 (ENSPPRG00000023209)	ENSPPRG00000022830 #22	ENSPPRG00000000404	ENSPPRG00000005297	ENSPPRG00000006366	LHX8 (ENSPPRG00000006595)	ENSPPRG00000006620	SLC44A5 (ENSPPRG00000009619)	ACADM (ENSPPRG00000011005)	RABGGTB (ENSPPRG00000011439)	MSH4 (ENSPPRG00000013083)	ASB17 (ENSPPRG00000013874)	ENSPPRG00000017991	ST6GALNAC3 (ENSPPRG00000016344)	ENSPPRG00000018165	ENSPPRG00000020270	ST6GALNAC5 (ENSPPRG00000021198)
Felidae	ANCESTRAL SPECIES																	ENSGT00390000015405.p #22
Panthera	ANCESTRAL SPECIES																	ENSGT00390000015405.p #22
Panthera_a	ANCESTRAL SPECIES																	ENSGT00390000015405.p #22
lion	MODERN SPECIES	5	NFYA (ENSPLOG00000002635)	OARD1 (ENSPLOG00000002588)	APOBEC2 (ENSPLOG00000002560)	TSPO2 (ENSPLOG00000002549)	UNC5CL (ENSPLOG00000002541)	ENSPLOG00000002525	LRFN2 (ENSPLOG00000002507)	MOCS1 (ENSPLOG00000002464)	DAAM2 (ENSPLOG00000002305)	KIF6 (ENSPLOG00000002142)	KCNK16 (ENSPLOG00000002089)	KCNK17 (ENSPLOG00000002070)	KCNK5 (ENSPLOG00000002047)	SAYSD1 (ENSPLOG00000002022)	GLP1R (ENSPLOG00000001989)	ENSPLOG00000001969 #22	DNAH8 (ENSPLOG00000001440)	GLO1 (ENSPLOG00000001158)	BTBD9 (ENSPLOG00000001128)	ENSPLOG00000001093	ZFAND3 (ENSPLOG00000001063)	MDGA1 (ENSPLOG00000001024)	CCDC167 (ENSPLOG00000001004)	CMTR1 (ENSPLOG00000000961)	RNF8 (ENSPLOG00000000841)	TBC1D22B (ENSPLOG00000000815)	TMEM217 (ENSPLOG00000000797)	TMEM217B (ENSPLOG00000000786)	PIM1 (ENSPLOG00000000767)	FGD2 (ENSPLOG00000000704)	MTCH1 (ENSPLOG00000000638)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000015405 #22
Common shrew	MODERN SPECIES	6884																ENSSARG00000003913 #22
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Primates	ANCESTRAL SPECIES	14	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00390000003682.ib.a	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	1022													PPP3R1 (ENSTSYG00000019531) #19	PNO1 (ENSTSYG00000004007) #20	WDR92 (ENSTSYG00000003991) #21	C1D (ENSTSYG00000035739) #22
Tarsier	MODERN SPECIES	4614																ENSTSYG00000026573 #22
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00390000003682.ib.a.a.b	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00940000158488 #7	ENSGT00910000147556	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556.tb.a #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00940000158488 #7	ENSGT00910000147556	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556.tb.a #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000182901.a.a.a.b.b	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36
Hominidae	ANCESTRAL SPECIES	19	ENSGT00940000158488 #7	ENSGT00910000147556	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556.tb.a #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000182901.a.a.a.b.b	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36
Homo/Pan/Gorilla group	DUPLICATION
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00910000147556	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00940000164467.d.b.b.b	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885.k #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s.a #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556.tb.a.b #27	ENSGT00910000147214	ENSGT00940000154556.tb.a.a.a #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000182901.a.a.a.b.b	ENSGT00950000183050.b.b.a #35
Gorilla	MODERN SPECIES	14	GKN1 (ENSGGOG00000009521) #9	GKN2 (ENSGGOG00000000046) #10	BMP10 (ENSGGOG00000044023) #12	ARHGAP25 (ENSGGOG00000009658) #13	PROKR1 (ENSGGOG00000016270) #14	APLF (ENSGGOG00000034832) #15	ENSGGOG00000041724	FBXO48 (ENSGGOG00000007346) #16	PLEK (ENSGGOG00000026840) #17	ENSGGOG00000005831 #17	CNRIP1 (ENSGGOG00000022874) #18	PPP3R1 (ENSGGOG00000039766) #19	PNO1 (ENSGGOG00000009158) #20	DNAAF10 (ENSGGOG00000010285) #21	ENSGGOG00000023297	ENSGGOG00000025982 #22	ETAA1 (ENSGGOG00000014411) #23	ENSGGOG00000005446 #24	SPRED2 (ENSGGOG00000007267) #25	ENSGGOG00000041600	ENSGGOG00000008505 #27	RAB1A (ENSGGOG00000026603) #28	CEP68 (ENSGGOG00000005826) #29	SLC1A4 (ENSGGOG00000011211) #30	AFTPH (ENSGGOG00000008449) #32	ENSGGOG00000023155	LGALSL (ENSGGOG00000006386) #34	ENSGGOG00000022216	PELI1 (ENSGGOG00000013460) #35	VPS54 (ENSGGOG00000006294) #36	UGP2 (ENSGGOG00000006283) #37
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00910000147768	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00940000164467.d.b.b.b	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885.k #17	ENSGT00390000004284 #18	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s.a #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556.tb.a.b #27	ENSGT00910000147214	ENSGT00940000154556.tb.a.a.a #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36
Human	MODERN SPECIES	11	NFU1 (ENSG00000169599)	GFPT1 (ENSG00000198380) #7	ANTXR1 (ENSG00000169604) #8	GKN1 (ENSG00000169605) #9	GKN2 (ENSG00000183607) #10	BMP10 (ENSG00000163217) #12	ARHGAP25 (ENSG00000163219) #13	PROKR1 (ENSG00000169618) #14	APLF (ENSG00000169621) #15	FBXO48 (ENSG00000204923) #16	PLEK (ENSG00000115956) #17	CNRIP1 (ENSG00000119865) #18	PPP3R1 (ENSG00000221823) #19	PNO1 (ENSG00000115946) #20	DNAAF10 (ENSG00000243667) #21	C1D (ENSG00000197223) #22	ETAA1 (ENSG00000143971) #23	MEIS1 (ENSG00000143995) #24	SPRED2 (ENSG00000198369) #25	ACTR2 (ENSG00000138071) #27	RAB1A (ENSG00000138069) #28	CEP68 (ENSG00000011523) #29	SLC1A4 (ENSG00000115902) #30	SERTAD2 (ENSG00000179833) #31	AFTPH (ENSG00000119844) #32	LGALSL (ENSG00000119862) #34	PELI1 (ENSG00000197329) #35	VPS54 (ENSG00000143952) #36	UGP2 (ENSG00000169764) #37	MDH1 (ENSG00000014641)	WDPCP (ENSG00000143951)
Pan	ANCESTRAL SPECIES	17	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00940000164467.d.b.b.b	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885.k #17	ENSGT00390000004284 #18	ENSGT00950000183091.A.b #21	ENSGT00390000018052.l #20	ENSGT00390000015405.s.b #22	ENSGT00390000015405.s.a #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556.tb.a.a.a #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Bonobo	MODERN SPECIES	14	NFU1 (ENSPPAG00000035496)	GFPT1 (ENSPPAG00000043271) #7	ANTXR1 (ENSPPAG00000038605) #8	GKN1 (ENSPPAG00000035903) #9	GKN2 (ENSPPAG00000042895) #10	BMP10 (ENSPPAG00000041693) #12	ARHGAP25 (ENSPPAG00000035053) #13	PROKR1 (ENSPPAG00000042374) #14	ENSPPAG00000036471	APLF (ENSPPAG00000033703) #15	FBXO48 (ENSPPAG00000030285) #16	PLEK (ENSPPAG00000036621) #17	CNRIP1 (ENSPPAG00000036249) #18	PNO1 (ENSPPAG00000039314) #20	ENSPPAG00000032606 #21	ENSPPAG00000037847 #22	ETAA1 (ENSPPAG00000034986) #23	ENSPPAG00000037169 #24	SPRED2 (ENSPPAG00000042240) #25	ENSPPAG00000026570	ENSPPAG00000030634 #27	RAB1A (ENSPPAG00000030253) #28	CEP68 (ENSPPAG00000026445) #29	SLC1A4 (ENSPPAG00000041051) #30	SERTAD2 (ENSPPAG00000033136) #31	ENSPPAG00000031785	AFTPH (ENSPPAG00000028223) #32	LGALSL (ENSPPAG00000039473) #34	PELI1 (ENSPPAG00000044117) #35	VPS54 (ENSPPAG00000028874) #36	UGP2 (ENSPPAG00000038898) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00390000015405.s.b #22
Homo/Pan group	ANCESTRAL SPECIES	60														ENSGT00940000156530.c #19	ENSGT00390000018052.l #20	ENSGT00390000015405.s.b #22
Pan	ANCESTRAL SPECIES	17	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00940000164467.d.b.b.b	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885.k #17	ENSGT00390000004284 #18	ENSGT00950000183091.A.b #21	ENSGT00390000018052.l #20	ENSGT00390000015405.s.b #22	ENSGT00390000015405.s.a #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556.tb.a.a.a #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36
Chimpanzee	MODERN SPECIES	14	NFU1 (ENSPTRG00000012016)	GFPT1 (ENSPTRG00000024129) #7	ANTXR1 (ENSPTRG00000012011) #8	GKN1 (ENSPTRG00000012010) #9	GKN2 (ENSPTRG00000012009) #10	BMP10 (ENSPTRG00000051530) #12	ARHGAP25 (ENSPTRG00000012007) #13	PROKR1 (ENSPTRG00000051956) #14	ENSPTRG00000047822	APLF (ENSPTRG00000012004) #15	FBXO48 (ENSPTRG00000030457) #16	PLEK (ENSPTRG00000012003) #17	CNRIP1 (ENSPTRG00000012002) #18	PNO1 (ENSPTRG00000011999) #20	ENSPTRG00000041941 #21	C1D (ENSPTRG00000023558) #22	ETAA1 (ENSPTRG00000011996) #23	MEIS1 (ENSPTRG00000011994) #24	SPRED2 (ENSPTRG00000011992) #25	ENSPTRG00000047998	ENSPTRG00000011990 #27	RAB1A (ENSPTRG00000011989) #28	CEP68 (ENSPTRG00000011988) #29	SLC1A4 (ENSPTRG00000011985) #30	SERTAD2 (ENSPTRG00000030469) #31	ENSPTRG00000045952	AFTPH (ENSPTRG00000011983) #32	LGALSL (ENSPTRG00000047293) #34	PELI1 (ENSPTRG00000023869) #35	VPS54 (ENSPTRG00000011978) #36	UGP2 (ENSPTRG00000011976) #37
Gorilla	MODERN SPECIES	1	ZNF37A (ENSGGOG00000006145)	ZNF33A (ENSGGOG00000014383)	ZNF25 (ENSGGOG00000023307)	ZNF248 (ENSGGOG00000016885)	ENSGGOG00000027469	ENSGGOG00000036120	ANKRD30A (ENSGGOG00000016263)	GJD4 (ENSGGOG00000005857)	CCNY (ENSGGOG00000004406)	CREM (ENSGGOG00000003999)	CUL2 (ENSGGOG00000003348)	PARD3 (ENSGGOG00000005482)	NRP1 (ENSGGOG00000001496)	ITGB1 (ENSGGOG00000006118)	CCDC7 (ENSGGOG00000004506)	ENSGGOG00000022296 #22	EPC1 (ENSGGOG00000008088)	ENSGGOG00000043841	ENSGGOG00000040767	KIF5B (ENSGGOG00000013417)	ARHGAP12 (ENSGGOG00000012753)	ZEB1 (ENSGGOG00000010090)	ZNF438 (ENSGGOG00000002677)	ENSGGOG00000037717	ENSGGOG00000022362	MAP3K8 (ENSGGOG00000005573)	ENSGGOG00000025617	ENSGGOG00000043632	ENSGGOG00000009335	JCAD (ENSGGOG00000017151)	ENSGGOG00000026771
Orangutan	MODERN SPECIES	14	NFU1 (ENSPPYG00000012339)	GFPT1 (ENSPPYG00000012340) #7	ANTXR1 (ENSPPYG00000030579) #8	GKN1 (ENSPPYG00000012343) #9	GKN2 (ENSPPYG00000012344) #10	BMP10 (ENSPPYG00000012345) #12	ARHGAP25 (ENSPPYG00000012346) #13	PROKR1 (ENSPPYG00000012347) #14	APLF (ENSPPYG00000012348) #15	FBXO48 (ENSPPYG00000012736) #16	PLEK (ENSPPYG00000040535) #17	CNRIP1 (ENSPPYG00000012351) #18	PPP3R1 (ENSPPYG00000031425) #19	PNO1 (ENSPPYG00000033861) #20	DNAAF10 (ENSPPYG00000012352) #21	C1D (ENSPPYG00000012354) #22	ETAA1 (ENSPPYG00000012355) #23	ENSPPYG00000012356 #24	SPRED2 (ENSPPYG00000012358) #25	ACTR2 (ENSPPYG00000012359) #27	RAB1A (ENSPPYG00000012360) #28	CEP68 (ENSPPYG00000012361) #29	SLC1A4 (ENSPPYG00000041756) #30	SERTAD2 (ENSPPYG00000035823) #31	AFTPH (ENSPPYG00000012364) #32	ENSPPYG00000012365	LGALSL (ENSPPYG00000012366) #34	PELI1 (ENSPPYG00000012369) #35	VPS54 (ENSPPYG00000012370) #36	UGP2 (ENSPPYG00000012371) #37	MDH1 (ENSPPYG00000012373)
Gibbon	MODERN SPECIES	4	GFPT1 (ENSNLEG00000010084) #7	ENSNLEG00000034994	ANTXR1 (ENSNLEG00000010058) #8	GKN1 (ENSNLEG00000029810) #9	GKN2 (ENSNLEG00000010046) #10	BMP10 (ENSNLEG00000010043) #12	ARHGAP25 (ENSNLEG00000010028) #13	PROKR1 (ENSNLEG00000010024) #14	APLF (ENSNLEG00000010019) #15	FBXO48 (ENSNLEG00000010016) #16	PLEK (ENSNLEG00000010002) #17	CNRIP1 (ENSNLEG00000009999) #18	PPP3R1 (ENSNLEG00000026538) #19	PNO1 (ENSNLEG00000034233) #20	DNAAF10 (ENSNLEG00000030882) #21	ENSNLEG00000032919 #22	ETAA1 (ENSNLEG00000009972) #23	ENSNLEG00000009963 #24	ENSNLEG00000027615	SPRED2 (ENSNLEG00000009959) #25	ACTR2 (ENSNLEG00000009948) #27	RAB1A (ENSNLEG00000009944) #28	ENSNLEG00000009939 #29	SLC1A4 (ENSNLEG00000009927) #30	SERTAD2 (ENSNLEG00000029151) #31	ENSNLEG00000009923	AFTPH (ENSNLEG00000009902) #32	LGALSL (ENSNLEG00000031680) #34	ENSNLEG00000028443	PELI1 (ENSNLEG00000009891) #35	VPS54 (ENSNLEG00000009859) #36
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00940000158488 #7	ENSGT00910000147556	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556.tb.a #27	ENSGT00940000154958.mb #28	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00390000015405.s #22
Golden snub-nosed monkey	MODERN SPECIES	857																C1D (ENSRROG00000029013) #22	ENSRROG00000029028	ETAA1 (ENSRROG00000044826) #23
Black snub-nosed monkey	MODERN SPECIES	560																C1D (ENSRBIG00000026471) #22	ENSRBIG00000027096	ETAA1 (ENSRBIG00000023781) #23	ALK (ENSRBIG00000035945)	CLIP4 (ENSRBIG00000044783)	PCARE (ENSRBIG00000036326)	TOGARAM2 (ENSRBIG00000018526)	WDR43 (ENSRBIG00000026670)	TRMT61B (ENSRBIG00000033023)	SPDYA (ENSRBIG00000042848)	PPP1CB (ENSRBIG00000029126)	PLB1 (ENSRBIG00000026344)	FOSL2 (ENSRBIG00000037678)	BABAM2 (ENSRBIG00000033019)	ENSRBIG00000040954	RBKS (ENSRBIG00000035118)
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00940000158488 #7	ENSGT00910000147556	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l.b #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556.tb.a #27	ENSGT00940000154958.mb #28	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Vervet Monkey	MODERN SPECIES	5	ENSCSAG00000019443	NFU1 (ENSCSAG00000014991)	GFPT1 (ENSCSAG00000014984) #7	ANTXR1 (ENSCSAG00000014972) #8	GKN1 (ENSCSAG00000014956) #9	GKN2 (ENSCSAG00000014947) #10	BMP10 (ENSCSAG00000014937) #12	ARHGAP25 (ENSCSAG00000014930) #13	APLF (ENSCSAG00000014912) #15	FBXO48 (ENSCSAG00000014884) #16	PLEK (ENSCSAG00000014878) #17	CNRIP1 (ENSCSAG00000014867) #18	PPP3R1 (ENSCSAG00000014862) #19	PNO1 (ENSCSAG00000014847) #20	DNAAF10 (ENSCSAG00000014819) #21	C1D (ENSCSAG00000014811) #22	ETAA1 (ENSCSAG00000014804) #23	MEIS1 (ENSCSAG00000014795) #24	SPRED2 (ENSCSAG00000014788) #25	ACTR2 (ENSCSAG00000014779) #27	ENSCSAG00000014775	CEP68 (ENSCSAG00000014763) #29	SLC1A4 (ENSCSAG00000014735) #30	ENSCSAG00000019444	SERTAD2 (ENSCSAG00000019445) #31	AFTPH (ENSCSAG00000014726) #32	LGALSL (ENSCSAG00000014717) #34	PELI1 (ENSCSAG00000014710) #35	VPS54 (ENSCSAG00000014705) #36	UGP2 (ENSCSAG00000014697) #37	MDH1 (ENSCSAG00000014691)
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00940000158488 #7	ENSGT00910000147556	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l.b #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s #22	ENSGT00390000010283.ab.a	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000155590.g.b	ENSGT00910000147398	ENSGT00940000156841 #25	ENSGT00940000154556.tb.a #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35
Macaca	ANCESTRAL SPECIES	17	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l.b #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s #22	ENSGT00390000010283.ab.a	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000155590.g.b	ENSGT00910000147398	ENSGT00940000156841 #25	ENSGT00940000154556.tb.a #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35
Macaca_a	DUPLICATION
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00390000011296	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l.b #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s.c #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556.tb.a #27	ENSGT00940000154958.lb.a.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a.h
Rhesus	MODERN SPECIES	4	NFU1 (ENSMMUG00000059210)	GFPT1 (ENSMMUG00000013797) #7	ANTXR1 (ENSMMUG00000014244) #8	ENSMMUG00000049123 #9	GKN2 (ENSMMUG00000014242) #10	BMP10 (ENSMMUG00000015055) #12	ARHGAP25 (ENSMMUG00000015052) #13	PROKR1 (ENSMMUG00000052056) #14	APLF (ENSMMUG00000007552) #15	FBXO48 (ENSMMUG00000060845) #16	PLEK (ENSMMUG00000009195) #17	CNRIP1 (ENSMMUG00000046992) #18	PPP3R1 (ENSMMUG00000046264) #19	PNO1 (ENSMMUG00000017461) #20	DNAAF10 (ENSMMUG00000017460) #21	C1D (ENSMMUG00000017209) #22	ETAA1 (ENSMMUG00000062156) #23	ENSMMUG00000049443	MEIS1 (ENSMMUG00000011216) #24	SPRED2 (ENSMMUG00000044784) #25	ACTR2 (ENSMMUG00000002263) #27	RAB1A (ENSMMUG00000021721) #28	CEP68 (ENSMMUG00000017019) #29	SLC1A4 (ENSMMUG00000010279) #30	SERTAD2 (ENSMMUG00000047067) #31	ENSMMUG00000014862	AFTPH (ENSMMUG00000006503) #32	ENSMMUG00000006504	LGALSL (ENSMMUG00000064711) #34	PELI1 (ENSMMUG00000059267) #35	VPS54 (ENSMMUG00000008772) #36
Crab-eating macaque	MODERN SPECIES	4	ANTXR1 (ENSMFAG00000044025) #8	ENSMFAG00000047324	GKN1 (ENSMFAG00000032957) #9	GKN2 (ENSMFAG00000044673) #10	BMP10 (ENSMFAG00000038780) #12	ARHGAP25 (ENSMFAG00000001418) #13	PROKR1 (ENSMFAG00000043932) #14	APLF (ENSMFAG00000045051) #15	FBXO48 (ENSMFAG00000038551) #16	PLEK (ENSMFAG00000054603) #17	CNRIP1 (ENSMFAG00000035167) #18	PPP3R1 (ENSMFAG00000031560) #19	PNO1 (ENSMFAG00000043544) #20	ENSMFAG00000064848	DNAAF10 (ENSMFAG00000042360) #21	ENSMFAG00000034261 #22	ENSMFAG00000056299	ETAA1 (ENSMFAG00000039723) #23	MEIS1 (ENSMFAG00000042877) #24	SPRED2 (ENSMFAG00000031151) #25	ACTR2 (ENSMFAG00000044097) #27	ENSMFAG00000061807	ENSMFAG00000046246 #28	ENSMFAG00000064674	ENSMFAG00000049291	CEP68 (ENSMFAG00000041409) #29	SLC1A4 (ENSMFAG00000003847) #30	ENSMFAG00000053049	ENSMFAG00000062833	SERTAD2 (ENSMFAG00000037664) #31	ENSMFAG00000061518
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000161277	ENSGT00940000160903	ENSGT00530000063929.b	ENSGT00940000154175.i.b	ENSGT00940000154175.i.a	ENSGT00510000046760.a	ENSGT00510000047559	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.b	ENSGT00940000158183	ENSGT01100000263493.a.b.a.b.b.b.a.a.a.a.b.b.a	ENSGT01100000263493.a.b.a.a.b.b.b.b.a.b.a.a	ENSGT00390000015405.s.d #22	ENSGT00940000161513	ENSGT00860000135858	ENSGT00390000004986	ENSGT00950000183201.a	ENSGT00940000153669.a	ENSGT00530000063695.a	ENSGT00940000159074	ENSGT00950000183168.A	ENSGT01030000234592.B	ENSGT00940000154883.g.a.a	ENSGT00940000165078.b	ENSGT00940000165078.a	ENSGT00940000162152	ENSGT00390000012084	ENSGT00940000160158
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000056286	TMEM123 (ENSMFAG00000057826)	BIRC2 (ENSMFAG00000033018)	YAP1 (ENSMFAG00000037027)	CEP126 (ENSMFAG00000030828)	ANGPTL5 (ENSMFAG00000036602)	TRPC6 (ENSMFAG00000002181)	ENSMFAG00000055655	ARHGAP42 (ENSMFAG00000000533)	CNTN5 (ENSMFAG00000045865)	ENSMFAG00000056178	ENSMFAG00000053298	ENSMFAG00000060346	ENSMFAG00000052366	ENSMFAG00000050345	ENSMFAG00000028681 #22	JRKL (ENSMFAG00000030353)	CCDC82 (ENSMFAG00000036325)	MAML2 (ENSMFAG00000031735)	MTMR2 (ENSMFAG00000040303)	CEP57 (ENSMFAG00000003768)	FAM76B (ENSMFAG00000042981)	ENSMFAG00000048059	SESN3 (ENSMFAG00000040069)	ENSMFAG00000055573	ENDOD1 (ENSMFAG00000055848)	KDM4F (ENSMFAG00000059067)	ENSMFAG00000040102	KDM4D (ENSMFAG00000024894)	CWC15 (ENSMFAG00000044052)	AMOTL1 (ENSMFAG00000032749)
Rhesus	MODERN SPECIES	5	BIRC2 (ENSMMUG00000003400)	BIRC3 (ENSMMUG00000058594)	YAP1 (ENSMMUG00000003396)	CFAP300 (ENSMMUG00000003394)	CEP126 (ENSMMUG00000020784)	ANGPTL5 (ENSMMUG00000020783)	TRPC6 (ENSMMUG00000011835)	PGR (ENSMMUG00000011846)	ENSMMUG00000059891	ARHGAP42 (ENSMMUG00000022603)	ENSMMUG00000057177	CNTN5 (ENSMMUG00000016737)	ENSMMUG00000061185	ENSMMUG00000060458	ENSMMUG00000052417	ENSMMUG00000038443 #22	ENSMMUG00000058706	JRKL (ENSMMUG00000003821)	ENSMMUG00000056501	CCDC82 (ENSMMUG00000007999)	ENSMMUG00000052484	MAML2 (ENSMMUG00000014806)	MTMR2 (ENSMMUG00000014801)	CEP57 (ENSMMUG00000014796)	FAM76B (ENSMMUG00000014792)	SESN3 (ENSMMUG00000009394)	ENDOD1 (ENSMMUG00000047793)	SRSF8 (ENSMMUG00000007639)	KDM4F (ENSMMUG00000045019)	KDM4E (ENSMMUG00000059644)	KDM4D (ENSMMUG00000023376)
Pig-tailed macaque	MODERN SPECIES	341	ENSMNEG00000025946	GKN1 (ENSMNEG00000043462) #9	GKN2 (ENSMNEG00000031833) #10	ENSMNEG00000032842	BMP10 (ENSMNEG00000042295) #12	ARHGAP25 (ENSMNEG00000037188) #13	ENSMNEG00000007960	PROKR1 (ENSMNEG00000037205) #14	APLF (ENSMNEG00000028788) #15	FBXO48 (ENSMNEG00000026784) #16	PLEK (ENSMNEG00000029803) #17	CNRIP1 (ENSMNEG00000028096) #18	PPP3R1 (ENSMNEG00000043603) #19	ENSMNEG00000031066 #20	DNAAF10 (ENSMNEG00000027774) #21	C1D (ENSMNEG00000040612) #22	ENSMNEG00000038737	ETAA1 (ENSMNEG00000043227) #23	MEIS1 (ENSMNEG00000037352) #24	ENSMNEG00000023818	ENSMNEG00000004414	SPRED2 (ENSMNEG00000028343) #25	ACTR2 (ENSMNEG00000044163) #27	ENSMNEG00000042121 #28	CEP68 (ENSMNEG00000032212) #29	SLC1A4 (ENSMNEG00000004689) #30	ENSMNEG00000006388	SERTAD2 (ENSMNEG00000008861) #31	ENSMNEG00000025227	AFTPH (ENSMNEG00000040816) #32	LGALSL (ENSMNEG00000029755) #34
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00940000158488 #7	ENSGT00910000147556	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l.b #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s #22	ENSGT00390000010283.ab.a	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000155590.g.b	ENSGT00910000147398	ENSGT00940000156841 #25	ENSGT00940000154556.tb.a #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35
Olive baboon	MODERN SPECIES	5	ANTXR1 (ENSPANG00000022518) #8	ENSPANG00000034498	ENSPANG00000047885	GKN1 (ENSPANG00000008629) #9	GKN2 (ENSPANG00000020409) #10	BMP10 (ENSPANG00000049229) #12	ARHGAP25 (ENSPANG00000010754) #13	PROKR1 (ENSPANG00000048102) #14	APLF (ENSPANG00000010484) #15	FBXO48 (ENSPANG00000019905) #16	PLEK (ENSPANG00000005755) #17	CNRIP1 (ENSPANG00000029881) #18	PPP3R1 (ENSPANG00000024026) #19	ENSPANG00000031684 #20	DNAAF10 (ENSPANG00000011915) #21	C1D (ENSPANG00000002886) #22	ETAA1 (ENSPANG00000007449) #23	MEIS1 (ENSPANG00000008059) #24	ENSPANG00000049032	SPRED2 (ENSPANG00000015698) #25	ACTR2 (ENSPANG00000007073) #27	RAB1A (ENSPANG00000010485) #28	CEP68 (ENSPANG00000009710) #29	SLC1A4 (ENSPANG00000025917) #30	SERTAD2 (ENSPANG00000021214) #31	ENSPANG00000033862	AFTPH (ENSPANG00000019355) #32	LGALSL (ENSPANG00000007113) #34	PELI1 (ENSPANG00000008630) #35	VPS54 (ENSPANG00000022299) #36	UGP2 (ENSPANG00000020689) #37
Cercopithecinae_d	ANCESTRAL SPECIES	32	ENSGT00940000158488 #7	ENSGT00910000147556	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l.b #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.s #22	ENSGT00390000010283.ab.a	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000155590.g.b	ENSGT00910000147398	ENSGT00940000156841 #25	ENSGT00940000154556.tb.a #27	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35
Sooty mangabey	MODERN SPECIES	494	GFPT1 (ENSCATG00000040348) #7	ANTXR1 (ENSCATG00000031559) #8	GKN1 (ENSCATG00000013735) #9	GKN2 (ENSCATG00000032902) #10	BMP10 (ENSCATG00000013241) #12	ARHGAP25 (ENSCATG00000043043) #13	ENSCATG00000035050	PROKR1 (ENSCATG00000001983) #14	APLF (ENSCATG00000015227) #15	FBXO48 (ENSCATG00000006573) #16	PLEK (ENSCATG00000037750) #17	CNRIP1 (ENSCATG00000037632) #18	PPP3R1 (ENSCATG00000036183) #19	PNO1 (ENSCATG00000018547) #20	DNAAF10 (ENSCATG00000028444) #21	C1D (ENSCATG00000045336) #22	ENSCATG00000033727	ETAA1 (ENSCATG00000036073) #23	MEIS1 (ENSCATG00000030958) #24	ENSCATG00000012177	ENSCATG00000045181	SPRED2 (ENSCATG00000034117) #25	ACTR2 (ENSCATG00000036025) #27	RAB1A (ENSCATG00000030853) #28	CEP68 (ENSCATG00000032378) #29	SLC1A4 (ENSCATG00000036187) #30	SERTAD2 (ENSCATG00000012102) #31	ENSCATG00000045350	AFTPH (ENSCATG00000032038) #32	LGALSL (ENSCATG00000029852) #34	PELI1 (ENSCATG00000031456) #35
Drill	MODERN SPECIES	917	GFPT1 (ENSMLEG00000028520) #7	ENSMLEG00000006440	ANTXR1 (ENSMLEG00000038172) #8	GKN1 (ENSMLEG00000036299) #9	GKN2 (ENSMLEG00000043292) #10	BMP10 (ENSMLEG00000030154) #12	ARHGAP25 (ENSMLEG00000038657) #13	PROKR1 (ENSMLEG00000037719) #14	APLF (ENSMLEG00000028828) #15	FBXO48 (ENSMLEG00000029566) #16	PLEK (ENSMLEG00000039341) #17	CNRIP1 (ENSMLEG00000039450) #18	PPP3R1 (ENSMLEG00000038265) #19	ENSMLEG00000035878 #20	DNAAF10 (ENSMLEG00000039884) #21	C1D (ENSMLEG00000027619) #22
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000015405.s #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000015405.s #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000015405.s #22
Capuchin	MODERN SPECIES	3	ASB17 (ENSCCAG00000026971)	ENSCCAG00000023736	ST6GALNAC3 (ENSCCAG00000030233)	ENSCCAG00000018853	ENSCCAG00000027183	ST6GALNAC5 (ENSCCAG00000022527)	PIGK (ENSCCAG00000033215)	ENSCCAG00000020636	ENSCCAG00000035323	ENSCCAG00000026907	AK5 (ENSCCAG00000033969)	ZZZ3 (ENSCCAG00000032124)	USP33 (ENSCCAG00000038065)	MIGA1 (ENSCCAG00000036798)	NEXN (ENSCCAG00000037450)	ENSCCAG00000023340 #22	FUBP1 (ENSCCAG00000036537)	DNAJB4 (ENSCCAG00000025488)	GIPC2 (ENSCCAG00000036013)	PTGFR (ENSCCAG00000032144)	IFI44L (ENSCCAG00000034830)	IFI44 (ENSCCAG00000025901)	ENSCCAG00000022401	ADGRL4 (ENSCCAG00000036750)	ENSCCAG00000020900	ENSCCAG00000009909	SERF1B (ENSCCAG00000016705)	ENSCCAG00000010507	ENSCCAG00000021648	ENSCCAG00000028673	ENSCCAG00000011359
Simiiformes	ANCESTRAL SPECIES																	ENSGT00390000015405.t #22
Platyrrhini	ANCESTRAL SPECIES	13	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l.c #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.t #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00390000003682.ib.a.a.b.a	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154277.a.b.a.b	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a.a.b #35
Cebidae	ANCESTRAL SPECIES	15	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l.c #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.t #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00390000003682.ib.a.a.b.a	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154277.a.b.a.b	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a.a.b #35
Marmoset	MODERN SPECIES	5	GFPT1 (ENSCJAG00000019141) #7	ANTXR1 (ENSCJAG00000019111) #8	GKN1 (ENSCJAG00000019108) #9	GKN2 (ENSCJAG00000019101) #10	BMP10 (ENSCJAG00000019096) #12	ARHGAP25 (ENSCJAG00000019073) #13	PROKR1 (ENSCJAG00000019067) #14	ENSCJAG00000078317	APLF (ENSCJAG00000006460) #15	FBXO48 (ENSCJAG00000006473) #16	PLEK (ENSCJAG00000006477) #17	CNRIP1 (ENSCJAG00000039706) #18	PPP3R1 (ENSCJAG00000006498) #19	PNO1 (ENSCJAG00000006564) #20	DNAAF10 (ENSCJAG00000044589) #21	ENSCJAG00000006589 #22	ENSCJAG00000083243	ETAA1 (ENSCJAG00000006604) #23	MEIS1 (ENSCJAG00000006613) #24	ENSCJAG00000073899	ENSCJAG00000067866	ENSCJAG00000079193	ENSCJAG00000080598	SPRED2 (ENSCJAG00000006693) #25	ACTR2 (ENSCJAG00000006722) #27	ENSCJAG00000046275 #28	ENSCJAG00000074307	ENSCJAG00000072263	CEP68 (ENSCJAG00000006788) #29	SLC1A4 (ENSCJAG00000006795) #30	ENSCJAG00000074052
Cebidae_a	ANCESTRAL SPECIES	30	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.l.c #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405.t #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00390000003682.ib.a.a.b.a	ENSGT00940000156841 #25	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154277.a.b.a.b	ENSGT00940000154958.lb.a #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a.a.b #35	ENSGT00390000000583 #36
Capuchin	MODERN SPECIES	23	GFPT1 (ENSCCAG00000031415) #7	ANTXR1 (ENSCCAG00000027435) #8	GKN1 (ENSCCAG00000038006) #9	GKN2 (ENSCCAG00000038016) #10	BMP10 (ENSCCAG00000022639) #12	ARHGAP25 (ENSCCAG00000020753) #13	PROKR1 (ENSCCAG00000027029) #14	APLF (ENSCCAG00000021851) #15	FBXO48 (ENSCCAG00000016980) #16	PLEK (ENSCCAG00000026558) #17	CNRIP1 (ENSCCAG00000034672) #18	PPP3R1 (ENSCCAG00000029751) #19	ENSCCAG00000017887	ENSCCAG00000030366 #20	DNAAF10 (ENSCCAG00000018459) #21	ENSCCAG00000030405 #22	ETAA1 (ENSCCAG00000027189) #23	ENSCCAG00000023051	MEIS1 (ENSCCAG00000020640) #24	SPRED2 (ENSCCAG00000035702) #25	ACTR2 (ENSCCAG00000030047) #27	ENSCCAG00000021773	ENSCCAG00000038117	RAB1A (ENSCCAG00000021869) #28	CEP68 (ENSCCAG00000022595) #29	ENSCCAG00000037790	SLC1A4 (ENSCCAG00000022825) #30	ENSCCAG00000032655	AFTPH (ENSCCAG00000022631) #32	ENSCCAG00000030319	LGALSL (ENSCCAG00000035879) #34
Bolivian squirrel monkey	MODERN SPECIES	48	GFPT1 (ENSSBOG00000033878) #7	ANTXR1 (ENSSBOG00000033293) #8	GKN1 (ENSSBOG00000030955) #9	GKN2 (ENSSBOG00000034618) #10	ENSSBOG00000034011 #11	BMP10 (ENSSBOG00000025851) #12	ARHGAP25 (ENSSBOG00000006007) #13	PROKR1 (ENSSBOG00000027190) #14	APLF (ENSSBOG00000023612) #15	FBXO48 (ENSSBOG00000021207) #16	PLEK (ENSSBOG00000031071) #17	CNRIP1 (ENSSBOG00000020258) #18	PPP3R1 (ENSSBOG00000021442) #19	ENSSBOG00000026710 #20	DNAAF10 (ENSSBOG00000035020) #21	ENSSBOG00000025275 #22	ETAA1 (ENSSBOG00000020086) #23	MEIS1 (ENSSBOG00000000062) #24	ENSSBOG00000018908	SPRED2 (ENSSBOG00000000156) #25	ACTR2 (ENSSBOG00000028028) #27	ENSSBOG00000024339	ENSSBOG00000018757	ENSSBOG00000031295	RAB1A (ENSSBOG00000023732) #28	CEP68 (ENSSBOG00000033296) #29	SLC1A4 (ENSSBOG00000023405) #30	AFTPH (ENSSBOG00000027803) #32	ENSSBOG00000019039	LGALSL (ENSSBOG00000029775) #34	PELI1 (ENSSBOG00000001340) #35
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	521						ENSANAG00000029879	ARHGAP25 (ENSANAG00000024401) #13	PROKR1 (ENSANAG00000023501) #14	APLF (ENSANAG00000019373) #15	FBXO48 (ENSANAG00000025635) #16	PLEK (ENSANAG00000032204) #17	CNRIP1 (ENSANAG00000029323) #18	ENSANAG00000030200 #19	ENSANAG00000021228 #20	DNAAF10 (ENSANAG00000029737) #21	ENSANAG00000035972 #22	ETAA1 (ENSANAG00000027571) #23	MEIS1 (ENSANAG00000034329) #24
Mas night monkey	MODERN SPECIES	768	ENSANAG00000004458	CRB2 (ENSANAG00000030431)	DENND1A (ENSANAG00000034989)	LHX2 (ENSANAG00000018858)	NEK6 (ENSANAG00000029360)	PSMB7 (ENSANAG00000030640)	ADGRD2 (ENSANAG00000036641)	NR5A1 (ENSANAG00000027136)	NR6A1 (ENSANAG00000036986)	OLFML2A (ENSANAG00000028567)	WDR38 (ENSANAG00000033407)	RPL35 (ENSANAG00000032849)	ENSANAG00000021654	GOLGA1 (ENSANAG00000020513)	SCAI (ENSANAG00000024288)	ENSANAG00000005773 #22	ENSANAG00000035375	PPP6C (ENSANAG00000033545)	ENSANAG00000002363	ENSANAG00000029634	HSPA5 (ENSANAG00000038513)	ENSANAG00000002903	GAPVD1 (ENSANAG00000026547)	ENSANAG00000006107	MAPKAP1 (ENSANAG00000038007)	PBX3 (ENSANAG00000026691)	MVB12B (ENSANAG00000021467)	LMX1B (ENSANAG00000037425)	ZBTB43 (ENSANAG00000038335)	ZBTB34 (ENSANAG00000037523)	ENSANAG00000033431
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00940000153289.a.a.a	ENSGT00910000146898	ENSGT00910000147360	ENSGT00910000148289	ENSGT00940000154935	ENSGT00940000155303	ENSGT00930000151028	ENSGT00390000000153.l.b.c.a	ENSGT01030000234539.b.b.b	ENSGT00940000156008	ENSGT00910000147265	ENSGT00390000008264	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653	ENSGT00950000183185.c.a.b	ENSGT00940000161631	ENSGT00940000162091	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00940000153289.a.a.a	ENSGT00910000146898	ENSGT00910000147360	ENSGT00910000148289	ENSGT00940000154935	ENSGT00940000155303	ENSGT00930000151028	ENSGT00390000000153.l.b.c.a	ENSGT01030000234539.b.b.b	ENSGT00940000156008	ENSGT00910000147265	ENSGT00390000008264	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000156653	ENSGT00950000183185.c.a.b	ENSGT00940000161631	ENSGT00940000162091	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b
Hominidae	ANCESTRAL SPECIES	13	ENSGT00390000014618.a	ENSGT00940000153289.a.a.a	ENSGT00910000146898	ENSGT00910000147360	ENSGT00940000154935	ENSGT00940000155303	ENSGT00930000151028	ENSGT00390000000153.l.b.c.a	ENSGT01030000234539.b.b.b	ENSGT00940000156008	ENSGT00910000147265	ENSGT00390000008264	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000156653	ENSGT00950000183185.c.a.b	ENSGT00940000161631	ENSGT00940000162091	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00390000014618.a	ENSGT00940000153289.a.a.a	ENSGT00910000146898	ENSGT00910000147360	ENSGT00940000154935	ENSGT00940000155303	ENSGT00930000151028	ENSGT00390000000153.l.b.c.a	ENSGT01030000234539.b.b.b	ENSGT00940000156008	ENSGT00910000147265	ENSGT00390000008264	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000156653.i	ENSGT00950000183185.c.a.b	ENSGT00940000161631	ENSGT00940000162091	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00390000010045.g.a.b	ENSGT00860000136117.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00390000014618.a	ENSGT00940000153289.a.a.a	ENSGT00910000146898	ENSGT00940000154935	ENSGT00940000155303	ENSGT00930000151028	ENSGT00390000000153.l.b.c.a	ENSGT01030000234539.b.b.b	ENSGT00940000156008	ENSGT00910000147265	ENSGT00390000008264	ENSGT00390000003738.a.a.b.y.b	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000156653.i	ENSGT00950000183185.c.a.b	ENSGT00940000161631	ENSGT00940000162091	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00390000010045.g.a.b	ENSGT00860000136117.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143
Pan	ANCESTRAL SPECIES	16	ENSGT00940000153289.a.a.a	ENSGT00910000146898	ENSGT00940000154935	ENSGT00940000154156.d.n.b.b.a	ENSGT00940000155303	ENSGT00930000151028	ENSGT00390000000153.l.b.c.a	ENSGT01030000234539.b.b.b	ENSGT00940000156008	ENSGT00910000147265	ENSGT00390000008264	ENSGT00390000003738.a.a.b.y.b	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000156653.i	ENSGT00950000183185.c.a.b	ENSGT00940000161631	ENSGT00940000162091	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00390000010045.g.a.b	ENSGT00860000136117.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143
Bonobo	MODERN SPECIES	1	KCNMA1 (ENSPPAG00000031977)	ENSPPAG00000034645	ENSPPAG00000034656	DLG5 (ENSPPAG00000041668)	ENSPPAG00000031986	ENSPPAG00000041726	ENSPPAG00000043469	ZMIZ1 (ENSPPAG00000037801)	PPIF (ENSPPAG00000032388)	ENSPPAG00000034843	ENSPPAG00000039528	ENSPPAG00000040556	ANXA11 (ENSPPAG00000035965)	PLAC9 (ENSPPAG00000022596)	TMEM254 (ENSPPAG00000037427)	ENSPPAG00000040091 #22	SFTPD (ENSPPAG00000040170)	SFTPA2 (ENSPPAG00000037547)	MAT1A (ENSPPAG00000029317)	DYDC1 (ENSPPAG00000009095)	DYDC2 (ENSPPAG00000036598)	PRXL2A (ENSPPAG00000037245)	TSPAN14 (ENSPPAG00000030989)	ENSPPAG00000037034	ENSPPAG00000020127	ENSPPAG00000040005	NRG3 (ENSPPAG00000033661)	GHITM (ENSPPAG00000014417)	GPR15LG (ENSPPAG00000042583)	CDHR1 (ENSPPAG00000011798)	LRIT2 (ENSPPAG00000029485)
Gorilla	MODERN SPECIES	1	CDHR1 (ENSGGOG00000012764)	C10orf99 (ENSGGOG00000012510)	GHITM (ENSGGOG00000011008)	NRG3 (ENSGGOG00000011517)	ENSGGOG00000036412	ENSGGOG00000024160	ENSGGOG00000006297	TSPAN14 (ENSGGOG00000005770)	PRXL2A (ENSGGOG00000013246)	DYDC2 (ENSGGOG00000003755)	DYDC1 (ENSGGOG00000002717)	MAT1A (ENSGGOG00000005862)	ANXA11 (ENSGGOG00000005851)	PLAC9 (ENSGGOG00000011111)	TMEM254 (ENSGGOG00000005287)	ENSGGOG00000025808 #22	SFTPD (ENSGGOG00000008952)	ENSGGOG00000003464	SFTPA2 (ENSGGOG00000021975)	ENSGGOG00000022019	SFTPA1 (ENSGGOG00000022096)	ENSGGOG00000024380	ENSGGOG00000025726	RAB18 (ENSGGOG00000008086)	MKX (ENSGGOG00000016220)	ODAD2 (ENSGGOG00000014550)	MPP7 (ENSGGOG00000013306)	WAC (ENSGGOG00000005639)	BAMBI (ENSGGOG00000004600)	ENSGGOG00000000756	ENSGGOG00000026771
Orangutan	MODERN SPECIES	1	LRIT2 (ENSPPYG00000002277)	CDHR1 (ENSPPYG00000002278)	GPR15LG (ENSPPYG00000002279)	GHITM (ENSPPYG00000002280)	ENSPPYG00000002282	NRG3 (ENSPPYG00000032077)	SH2D4B (ENSPPYG00000002286)	TSPAN14 (ENSPPYG00000002287)	DYDC2 (ENSPPYG00000002288)	DYDC1 (ENSPPYG00000002289)	ENSPPYG00000002290	MAT1A (ENSPPYG00000002291)	ANXA11 (ENSPPYG00000002292)	PLAC9 (ENSPPYG00000038414)	TMEM254 (ENSPPYG00000002293)	ENSPPYG00000002294 #22	ENSPPYG00000002295	ENSPPYG00000041507	ENSPPYG00000039923	ZCCHC24 (ENSPPYG00000035309)	PPIF (ENSPPYG00000002301)	ZMIZ1 (ENSPPYG00000002302)	RPS24 (ENSPPYG00000002304)	POLR3A (ENSPPYG00000002305)	DLG5 (ENSPPYG00000002306)	ENSPPYG00000002308	KCNMA1 (ENSPPYG00000002311)	LRMDA (ENSPPYG00000002312)	ZNF503 (ENSPPYG00000002853)	COMTD1 (ENSPPYG00000002314)	VDAC2 (ENSPPYG00000037153)
Gibbon	MODERN SPECIES		DNAH10 (ENSNLEG00000002049)	ATP6V0A2 (ENSNLEG00000001958)	TCTN2 (ENSNLEG00000001951)	GTF2H3 (ENSNLEG00000001843)	EIF2B1 (ENSNLEG00000028701)	DDX55 (ENSNLEG00000001658)	TMED2 (ENSNLEG00000001652)	ENSNLEG00000027322	SNRNP35 (ENSNLEG00000029859)	RILPL2 (ENSNLEG00000001614)	ENSNLEG00000031255	SBNO1 (ENSNLEG00000001502)	ENSNLEG00000001478	MTRFR (ENSNLEG00000001470)	MPHOSPH9 (ENSNLEG00000001405)	ENSNLEG00000030288 #22	ENSNLEG00000002378	ENSNLEG00000002315	ENSNLEG00000002281	VPS37B (ENSNLEG00000002279)	CCDC62 (ENSNLEG00000002193)	DENR (ENSNLEG00000029880)	KNTC1 (ENSNLEG00000001977)	RSRC2 (ENSNLEG00000034529)	ZCCHC8 (ENSNLEG00000001723)	CLIP1 (ENSNLEG00000001559)	VPS33A (ENSNLEG00000001520)	DIABLO (ENSNLEG00000001453)	B3GNT4 (ENSNLEG00000001452)	LRRC43 (ENSNLEG00000027791)	IL31 (ENSNLEG00000001440)
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00940000156033	ENSGT00940000159143	ENSGT00940000155509	ENSGT00390000015172	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00940000159732	ENSGT00940000159235	ENSGT00940000161199	ENSGT00940000162091	ENSGT00940000161631	ENSGT00950000183185.c.a.b	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653	ENSGT00390000008264	ENSGT00910000147265	ENSGT00940000156008	ENSGT01030000234539.b.b.b	ENSGT00390000000153.l.b.c.a	ENSGT00930000151028	ENSGT00940000155303	ENSGT00940000154935	ENSGT00940000153289.a.a.a	ENSGT00390000014618.a	ENSGT00390000004409	ENSGT00950000182869.e.a.a.f
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00940000156033	ENSGT00940000159143	ENSGT00940000155509	ENSGT00390000015172	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00940000159732	ENSGT00940000159235	ENSGT00940000161199.b.a	ENSGT00940000162091	ENSGT00940000161631	ENSGT00950000183185.c.a.b	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653.n	ENSGT00940000156653.o	ENSGT00390000008264	ENSGT00910000147265	ENSGT00940000156008	ENSGT01030000234539.b.b.b	ENSGT00390000000153.l.b.c.a	ENSGT00930000151028	ENSGT00940000155303	ENSGT00940000154935	ENSGT00940000153289.a.a.a	ENSGT00390000014618.a	ENSGT00390000004409
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00940000156033	ENSGT00940000159143	ENSGT00940000155509	ENSGT00390000015172	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00940000159732	ENSGT00940000159235	ENSGT00940000161199.b.a	ENSGT00940000162091	ENSGT00940000161631	ENSGT00950000183185.c.a.b	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000156653.n.b	ENSGT00940000156653.o	ENSGT00390000008264	ENSGT00910000147265	ENSGT00940000156008	ENSGT01030000234539.b.b.b	ENSGT00390000000153.l.b.c.a	ENSGT00930000151028	ENSGT00940000155303	ENSGT00940000154935	ENSGT00910000147319	ENSGT00940000153289.a.a.a	ENSGT00390000014618.a	ENSGT00390000004409
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00940000159143	ENSGT00940000155509	ENSGT00390000015172	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00950000183120.e.a.b.k	ENSGT00940000159732	ENSGT00940000159235	ENSGT00940000161199.b.a	ENSGT00940000162091	ENSGT00940000161631	ENSGT00950000183185.c.a.b	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000156653.n.b	ENSGT00390000008264	ENSGT00910000147265	ENSGT00940000156008	ENSGT01030000234539.b.b.b	ENSGT00390000014818.g.b.b	ENSGT00390000000153.l.b.c.a	ENSGT00930000151028	ENSGT00940000155303	ENSGT00940000154935	ENSGT00910000147319	ENSGT00940000153289.a.a.a	ENSGT00390000014618.a	ENSGT00390000004409
Olive baboon	MODERN SPECIES	2	GHITM (ENSPANG00000022606)	ENSPANG00000037881	NRG3 (ENSPANG00000022613)	ENSPANG00000048493	SH2D4B (ENSPANG00000022612)	TSPAN14 (ENSPANG00000022582)	PRXL2A (ENSPANG00000022583)	ENSPANG00000024230	DYDC2 (ENSPANG00000022584)	DYDC1 (ENSPANG00000022585)	MAT1A (ENSPANG00000022586)	ANXA11 (ENSPANG00000022587)	ENSPANG00000039078	TMEM254 (ENSPANG00000022580)	ENSPANG00000044291	ENSPANG00000000501 #22	SFTPD (ENSPANG00000022579)	ENSPANG00000022578	ENSPANG00000037998	ENSPANG00000031002	ENSPANG00000039699	ZCCHC24 (ENSPANG00000022503)	PPIF (ENSPANG00000022504)	ZMIZ1 (ENSPANG00000022505)	ENSPANG00000048295	ENSPANG00000047646	ENSPANG00000022507	POLR3A (ENSPANG00000022508)	DLG5 (ENSPANG00000022509)	ENSPANG00000040260	KCNMA1 (ENSPANG00000022497)
Cercopithecinae_d	ANCESTRAL SPECIES	214							ENSGT00940000159732	ENSGT00940000159235	ENSGT00940000161199.b.a	ENSGT00940000162091	ENSGT00940000161631	ENSGT00950000183185.c.a.b	ENSGT00940000156914	ENSGT00940000165487	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000156653.n.b
Drill	MODERN SPECIES	407																ENSMLEG00000028412 #22	SFTPD (ENSMLEG00000032015)
Sooty mangabey	MODERN SPECIES	379							SH2D4B (ENSCATG00000030474)	TSPAN14 (ENSCATG00000031568)	PRXL2A (ENSCATG00000006717)	DYDC2 (ENSCATG00000007951)	DYDC1 (ENSCATG00000002011)	MAT1A (ENSCATG00000000417)	ANXA11 (ENSCATG00000009045)	ENSCATG00000033421	TMEM254 (ENSCATG00000029182)	ENSCATG00000043348 #22	SFTPD (ENSCATG00000036936)	ENSCATG00000005654	ENSCATG00000033717
Macaca	ANCESTRAL SPECIES	11	ENSGT00940000156033	ENSGT00940000159143	ENSGT00940000155509	ENSGT00390000015172	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00940000159732	ENSGT00940000159235	ENSGT00940000161199.b.a	ENSGT00940000162091	ENSGT00940000161631	ENSGT00950000183185.c.a.b	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653.n.a.a	ENSGT00940000156653.o	ENSGT00390000008264	ENSGT00940000156008	ENSGT01030000234539.b.b.b	ENSGT00390000000153.l.b.c.a	ENSGT00930000151028	ENSGT00940000155303	ENSGT00940000154935	ENSGT00910000147319	ENSGT00940000153289.a.a.a	ENSGT00390000014618.a	ENSGT00390000004409
Pig-tailed macaque	MODERN SPECIES	353				ENSMNEG00000020863	ENSMNEG00000027191	ENSMNEG00000038329	SH2D4B (ENSMNEG00000036278)	TSPAN14 (ENSMNEG00000032257)	ENSMNEG00000039158	DYDC2 (ENSMNEG00000029695)	DYDC1 (ENSMNEG00000002410)	MAT1A (ENSMNEG00000042654)	ANXA11 (ENSMNEG00000007272)	PLAC9 (ENSMNEG00000031716)	TMEM254 (ENSMNEG00000031740)	ENSMNEG00000020626 #22	SFTPD (ENSMNEG00000033500)	ENSMNEG00000044696	ENSMNEG00000033190	ENSMNEG00000030862	ZCCHC24 (ENSMNEG00000042050)	PPIF (ENSMNEG00000028765)	ZMIZ1 (ENSMNEG00000041879)	ENSMNEG00000014810	POLR3A (ENSMNEG00000035163)	DLG5 (ENSMNEG00000026685)	ENSMNEG00000043575	KCNMA1 (ENSMNEG00000039864)	ENSMNEG00000039846	ENSMNEG00000021074	LRMDA (ENSMNEG00000029113)
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00940000159143	ENSGT00940000155509	ENSGT00390000015172	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00940000159732	ENSGT00940000159235	ENSGT00940000161199.b.a	ENSGT00940000162091	ENSGT00940000161631	ENSGT00950000183185.c.a.b	ENSGT01100000263493.a.b.a.a.b.b.b.a.b.a.a.b	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653.n.a.a	ENSGT00940000156653.o	ENSGT00390000008264	ENSGT00940000156008	ENSGT01030000234539.b.b.b	ENSGT00390000000153.l.b.c.a	ENSGT00930000151028	ENSGT00940000155303	ENSGT00940000154935	ENSGT00910000147319	ENSGT00940000153289.a.a.a	ENSGT01100000263539.b.a.a.a.a.a.b.a.a.a.a.a.b.a.b	ENSGT00390000014618.a
Rhesus	MODERN SPECIES	19	LRIT2 (ENSMMUG00000000659)	CDHR1 (ENSMMUG00000000658)	GHITM (ENSMMUG00000018572)	NRG3 (ENSMMUG00000017380)	ENSMMUG00000055918	ENSMMUG00000049411	TSPAN14 (ENSMMUG00000013895)	PRXL2A (ENSMMUG00000021773)	DYDC2 (ENSMMUG00000021774)	DYDC1 (ENSMMUG00000055336)	MAT1A (ENSMMUG00000018634)	ENSMMUG00000063666	ANXA11 (ENSMMUG00000019780)	PLAC9 (ENSMMUG00000003014)	TMEM254 (ENSMMUG00000003015)	ENSMMUG00000043184 #22	SFTPD (ENSMMUG00000002787)	MBL1 (ENSMMUG00000002786)	ENSMMUG00000040590	SFTPA1 (ENSMMUG00000047229)	ENSMMUG00000057196	ZCCHC24 (ENSMMUG00000051972)	PPIF (ENSMMUG00000003189)	ZMIZ1 (ENSMMUG00000008790)	RPS24 (ENSMMUG00000030562)	POLR3A (ENSMMUG00000005514)	DLG5 (ENSMMUG00000009128)	KCNMA1 (ENSMMUG00000018390)	ENSMMUG00000050670	LRMDA (ENSMMUG00000023415)	ENSMMUG00000059732
Crab-eating macaque	MODERN SPECIES	19	CDHR1 (ENSMFAG00000001885)	GPR15LG (ENSMFAG00000043609)	GHITM (ENSMFAG00000043812)	ENSMFAG00000058668	NRG3 (ENSMFAG00000039411)	TSPAN14 (ENSMFAG00000045856)	SH2D4B (ENSMFAG00000003299)	PRXL2A (ENSMFAG00000043331)	DYDC2 (ENSMFAG00000031434)	DYDC1 (ENSMFAG00000036906)	MAT1A (ENSMFAG00000038544)	ENSMFAG00000063395	ANXA11 (ENSMFAG00000045443)	ENSMFAG00000026512	ENSMFAG00000033371	ENSMFAG00000034034 #22	SFTPD (ENSMFAG00000045610)	ENSMFAG00000001265	ENSMFAG00000039235	ENSMFAG00000051159	ZCCHC24 (ENSMFAG00000063832)	ENSMFAG00000054056	PPIF (ENSMFAG00000041215)	ZMIZ1 (ENSMFAG00000043959)	ENSMFAG00000056846	ENSMFAG00000037643	POLR3A (ENSMFAG00000032218)	DLG5 (ENSMFAG00000032038)	KCNMA1 (ENSMFAG00000035904)	ENSMFAG00000049972	LRMDA (ENSMFAG00000032903)
Rhinopithecus	ANCESTRAL SPECIES	204							ENSGT00940000159732	ENSGT00940000159235	ENSGT00940000161199	ENSGT00940000162091	ENSGT00940000161631	ENSGT00950000183185.c.a.b	ENSGT00940000156914	ENSGT00390000017848	ENSGT00390000016042	ENSGT00390000015405.t #22	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653.l	ENSGT00940000156653.m	ENSGT00390000008264	ENSGT00940000156008	ENSGT01030000234539.b.b.b	ENSGT00940000163541	ENSGT00390000000153.l.b.c.a	ENSGT00930000151028	ENSGT00940000155303	ENSGT00940000154156.d.n.b.b.a.a	ENSGT00940000154437.mc.a.a.a.b	ENSGT00910000147360	ENSGT00910000146898
Golden snub-nosed monkey	MODERN SPECIES	1067											MAT1A (ENSRROG00000029224)	ENSRROG00000041756	ANXA11 (ENSRROG00000019845)	PLAC9 (ENSRROG00000040785)	TMEM254 (ENSRROG00000038790)	ENSRROG00000005944 #22	SFTPD (ENSRROG00000032074)	ENSRROG00000038797	ENSRROG00000005158	ENSRROG00000033783	ZCCHC24 (ENSRROG00000041812)	PPIF (ENSRROG00000036080)	ZMIZ1 (ENSRROG00000033232)	ENSRROG00000032510	POLR3A (ENSRROG00000025527)	DLG5 (ENSRROG00000029367)	ENSRROG00000035209	ENSRROG00000034151	ENSRROG00000034919	ENSRROG00000019711	ENSRROG00000031784
Black snub-nosed monkey	MODERN SPECIES	1841							SH2D4B (ENSRBIG00000039902)	TSPAN14 (ENSRBIG00000033365)	PRXL2A (ENSRBIG00000031726)	DYDC2 (ENSRBIG00000034822)	DYDC1 (ENSRBIG00000025903)	MAT1A (ENSRBIG00000039833)	ANXA11 (ENSRBIG00000040122)	PLAC9 (ENSRBIG00000043290)	TMEM254 (ENSRBIG00000035777)	ENSRBIG00000026211 #22	SFTPD (ENSRBIG00000041704)	ENSRBIG00000030139	ENSRBIG00000040102	ENSRBIG00000022591
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Lemuriformes	ANCESTRAL SPECIES	19	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Mouse lemur	MODERN SPECIES	26	ENSMICG00000044702	GFPT1 (ENSMICG00000035387) #7	ANTXR1 (ENSMICG00000003756) #8	GKN1 (ENSMICG00000003749) #9	GKN2 (ENSMICG00000003743) #10	BMP10 (ENSMICG00000044994) #12	ARHGAP25 (ENSMICG00000003739) #13	PROKR1 (ENSMICG00000045105) #14	ENSMICG00000003735 #15	FBXO48 (ENSMICG00000027392) #16	PLEK (ENSMICG00000003728) #17	CNRIP1 (ENSMICG00000003722) #18	PPP3R1 (ENSMICG00000037583) #19	ENSMICG00000010897 #20	DNAAF10 (ENSMICG00000010876) #21	C1D (ENSMICG00000032141) #22	ETAA1 (ENSMICG00000033585) #23	MEIS1 (ENSMICG00000017054) #24	SPRED2 (ENSMICG00000006435) #25	ENSMICG00000036415 #27	RAB1A (ENSMICG00000012587) #28	CEP68 (ENSMICG00000037255) #29	SLC1A4 (ENSMICG00000012577) #30	ENSMICG00000041471	ENSMICG00000044806	AFTPH (ENSMICG00000037342) #32	LGALSL (ENSMICG00000031755) #34	PELI1 (ENSMICG00000044746) #35	VPS54 (ENSMICG00000035608) #36	UGP2 (ENSMICG00000006509) #37	ENSMICG00000015195
Lemuriformes_a	ANCESTRAL SPECIES	52	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a.g.a
Coquerels sifaka	MODERN SPECIES	350	ENSPCOG00000011569	GFPT1 (ENSPCOG00000025259) #7	ANTXR1 (ENSPCOG00000015864) #8	GKN1 (ENSPCOG00000015313) #9	GKN2 (ENSPCOG00000021868) #10	BMP10 (ENSPCOG00000014638) #12	ARHGAP25 (ENSPCOG00000019453) #13	PROKR1 (ENSPCOG00000021244) #14	ENSPCOG00000013580 #15	FBXO48 (ENSPCOG00000002660) #16	PLEK (ENSPCOG00000013510) #17	CNRIP1 (ENSPCOG00000024225) #18	PPP3R1 (ENSPCOG00000022338) #19	PNO1 (ENSPCOG00000025019) #20	DNAAF10 (ENSPCOG00000014968) #21	C1D (ENSPCOG00000016112) #22	ENSPCOG00000026949	ETAA1 (ENSPCOG00000001345) #23
Greater bamboo lemur	MODERN SPECIES	617								PROKR1 (ENSPSMG00000000830) #14	APLF (ENSPSMG00000000808) #15	ENSPSMG00000000764 #16	PLEK (ENSPSMG00000000754) #17	CNRIP1 (ENSPSMG00000000727) #18	PPP3R1 (ENSPSMG00000000675) #19	PNO1 (ENSPSMG00000000616) #20	DNAAF10 (ENSPSMG00000000572) #21	C1D (ENSPSMG00000000528) #22	ETAA1 (ENSPSMG00000000519) #23	MEIS1 (ENSPSMG00000000482) #24	SPRED2 (ENSPSMG00000000404) #25	ACTR2 (ENSPSMG00000000347) #27	ENSPSMG00000000286	RAB1A (ENSPSMG00000000273) #28	CEP68 (ENSPSMG00000000219) #29	SLC1A4 (ENSPSMG00000000139) #30	SERTAD2 (ENSPSMG00000024045) #31	AFTPH (ENSPSMG00000024022) #32	LGALSL (ENSPSMG00000023973) #34
Bushbaby	MODERN SPECIES	363							RAB9B (ENSOGAG00000015082)	PLP1 (ENSOGAG00000015080)	ENSOGAG00000005390	ENSOGAG00000030762	TCEAL1 (ENSOGAG00000011846)	ENSOGAG00000011845	ENSOGAG00000005299	TCEAL4 (ENSOGAG00000030967)	ENSOGAG00000034552	ENSOGAG00000027934 #22	BEX3 (ENSOGAG00000014857)	ENSOGAG00000014854	TCEAL7 (ENSOGAG00000028590)	ENSOGAG00000014850	ENSOGAG00000025432	ENSOGAG00000027892	TCEAL8 (ENSOGAG00000015533)	ENSOGAG00000025040	ENSOGAG00000002202	ENSOGAG00000002201	ENSOGAG00000024066	ENSOGAG00000031379
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Tree shrew	MODERN SPECIES	7170																C1D (ENSTBEG00000009797) #22
Glires	ANCESTRAL SPECIES	13	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Rodentia	ANCESTRAL SPECIES	15	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00940000164891	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37
Marmotini	ANCESTRAL SPECIES	14	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000164891	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000154431.e.a.f	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36
Alpin marmot	MODERN SPECIES	6	GKN1 (ENSMMMG00000005442) #9	GKN2 (ENSMMMG00000005457) #10	ENSMMMG00000005470 #11	BMP10 (ENSMMMG00000005486) #12	ENSMMMG00000005514	ARHGAP25 (ENSMMMG00000005520) #13	ENSMMMG00000005553	APLF (ENSMMMG00000005578) #15	FBXO48 (ENSMMMG00000005580) #16	PLEK (ENSMMMG00000005592) #17	CNRIP1 (ENSMMMG00000005618) #18	ENSMMMG00000005630	PPP3R1 (ENSMMMG00000005651) #19	PNO1 (ENSMMMG00000005661) #20	DNAAF10 (ENSMMMG00000005668) #21	C1D (ENSMMMG00000005685) #22	ETAA1 (ENSMMMG00000005704) #23	ENSMMMG00000005754	ENSMMMG00000005757	MEIS1 (ENSMMMG00000005763) #24	ENSMMMG00000005870	ENSMMMG00000005873	SPRED2 (ENSMMMG00000005882) #25	ENSMMMG00000005906	ACTR2 (ENSMMMG00000005910) #27	RAB1A (ENSMMMG00000005929) #28	CEP68 (ENSMMMG00000005980) #29	SLC1A4 (ENSMMMG00000006026) #30	ENSMMMG00000006042	ENSMMMG00000006048	AFTPH (ENSMMMG00000006097) #32
Marmotini_b	ANCESTRAL SPECIES	44	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000164891	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000154431.e.a.f	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	47	GFPT1 (ENSUPAG00010010498) #7	ANTXR1 (ENSUPAG00010010542) #8	GKN1 (ENSUPAG00010010567) #9	GKN2 (ENSUPAG00010010576) #10	ENSUPAG00010010583 #11	BMP10 (ENSUPAG00010010590) #12	ARHGAP25 (ENSUPAG00010010596) #13	ENSUPAG00010010610	APLF (ENSUPAG00010010617) #15	FBXO48 (ENSUPAG00010010632) #16	PLEK (ENSUPAG00010010638) #17	CNRIP1 (ENSUPAG00010010645) #18	PPP3R1 (ENSUPAG00010010653) #19	PNO1 (ENSUPAG00010010658) #20	DNAAF10 (ENSUPAG00010010668) #21	ENSUPAG00010010674 #22	ETAA1 (ENSUPAG00010010688) #23	ENSUPAG00010010694	MEIS1 (ENSUPAG00010010695) #24	ENSUPAG00010010713	ENSUPAG00010010722	SPRED2 (ENSUPAG00010010724) #25	ENSUPAG00010010742	ACTR2 (ENSUPAG00010010750) #27	RAB1A (ENSUPAG00010010773) #28	CEP68 (ENSUPAG00010010822) #29	SLC1A4 (ENSUPAG00010010829) #30	ENSUPAG00010010837	SERTAD2 (ENSUPAG00010010839) #31	AFTPH (ENSUPAG00010010843) #32	LGALSL (ENSUPAG00010010929) #34
Arctic ground squirrel	MODERN SPECIES	389														CNOT11 (ENSUPAG00010008934)	RNF149 (ENSUPAG00010008945)	ENSUPAG00010008977 #22	CREG2 (ENSUPAG00010008997)	RFX8 (ENSUPAG00010009009)	MAP4K4 (ENSUPAG00010009052)	IL1R2 (ENSUPAG00010010625)	IL1R1 (ENSUPAG00010010814)	IL1RL2 (ENSUPAG00010010855)	ENSUPAG00010010880	IL18R1 (ENSUPAG00010010899)	IL18RAP (ENSUPAG00010010926)	SLC9A4 (ENSUPAG00010010967)	SLC9A2 (ENSUPAG00010010983)	MFSD9 (ENSUPAG00010011005)	TMEM182 (ENSUPAG00010011013)
Squirrel	MODERN SPECIES	91	GFPT1 (ENSSTOG00000013461) #7	ANTXR1 (ENSSTOG00000010370) #8	GKN1 (ENSSTOG00000024019) #9	GKN2 (ENSSTOG00000010364) #10	ENSSTOG00000025416 #11	BMP10 (ENSSTOG00000010358) #12	ARHGAP25 (ENSSTOG00000010347) #13	ENSSTOG00000010343	APLF (ENSSTOG00000014677) #15	FBXO48 (ENSSTOG00000014675) #16	PLEK (ENSSTOG00000014667) #17	CNRIP1 (ENSSTOG00000004875) #18	PPP3R1 (ENSSTOG00000025985) #19	PNO1 (ENSSTOG00000026989) #20	DNAAF10 (ENSSTOG00000024192) #21	C1D (ENSSTOG00000012346) #22	ETAA1 (ENSSTOG00000027144) #23	MEIS1 (ENSSTOG00000009914) #24	ENSSTOG00000024155	SPRED2 (ENSSTOG00000022318) #25	ACTR2 (ENSSTOG00000012608) #27	ENSSTOG00000020693 #28	CEP68 (ENSSTOG00000011479) #29	SLC1A4 (ENSSTOG00000025160) #30	SERTAD2 (ENSSTOG00000008454) #31	ENSSTOG00000030042	AFTPH (ENSSTOG00000020828) #32	LGALSL (ENSSTOG00000024204) #34	PELI1 (ENSSTOG00000026315) #35	VPS54 (ENSSTOG00000023517) #36	UGP2 (ENSSTOG00000000789) #37
Eurasian red squirrel	MODERN SPECIES	5	ANTXR1 (ENSSVLG00005022150) #8	GKN1 (ENSSVLG00005022077) #9	GKN2 (ENSSVLG00005021978) #10	ENSSVLG00005021937 #11	BMP10 (ENSSVLG00005021912) #12	ARHGAP25 (ENSSVLG00005021763) #13	PROKR1 (ENSSVLG00005021730) #14	ENSSVLG00005021708	APLF (ENSSVLG00005021663) #15	FBXO48 (ENSSVLG00005021637) #16	PLEK (ENSSVLG00005021563) #17	CNRIP1 (ENSSVLG00005021502) #18	PPP3R1 (ENSSVLG00005021432) #19	PNO1 (ENSSVLG00005021413) #20	DNAAF10 (ENSSVLG00005021285) #21	C1D (ENSSVLG00005021246) #22	ETAA1 (ENSSVLG00005021110) #23	MEIS1 (ENSSVLG00005020894) #24	ENSSVLG00005020854	SPRED2 (ENSSVLG00005020765) #25	ACTR2 (ENSSVLG00005020565) #27	ENSSVLG00005020476 #28	CEP68 (ENSSVLG00005020379) #29	SOWAHC (ENSSVLG00005020212)	SEPTIN10 (ENSSVLG00005020034)	SH3RF3 (ENSSVLG00005019900)	EDAR (ENSSVLG00005019677)	CCDC138 (ENSSVLG00005019503)	RANBP2 (ENSSVLG00005018522)	ENSSVLG00005018289	ENSSVLG00005018042
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A.f #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00390000001858	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Hystricomorpha_a	ANCESTRAL SPECIES	35	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A.f #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	37	GFPT1 (ENSCPOG00000014259) #7	ANTXR1 (ENSCPOG00000009963) #8	GKN1 (ENSCPOG00000014181) #9	GKN2 (ENSCPOG00000014178) #10	ENSCPOG00000025285 #11	BMP10 (ENSCPOG00000019825) #12	ARHGAP25 (ENSCPOG00000025943) #13	PROKR1 (ENSCPOG00000039175) #14	APLF (ENSCPOG00000003527) #15	FBXO48 (ENSCPOG00000030418) #16	PLEK (ENSCPOG00000003525) #17	CNRIP1 (ENSCPOG00000033555) #18	PPP3R1 (ENSCPOG00000036560) #19	PNO1 (ENSCPOG00000010130) #20	DNAAF10 (ENSCPOG00000010110) #21	ENSCPOG00000037986 #22	ETAA1 (ENSCPOG00000012749) #23	ENSCPOG00000001035	MEIS1 (ENSCPOG00000008177) #24
Guinea pig	MODERN SPECIES	6	SLC46A3 (ENSCPOG00000015460)	POMP (ENSCPOG00000001710)	FLT1 (ENSCPOG00000013357)	PAN3 (ENSCPOG00000013349)	FLT3 (ENSCPOG00000007285)	CDX2 (ENSCPOG00000007276)	PDX1 (ENSCPOG00000024534)	ENSCPOG00000026854	ENSCPOG00000033461	LNX2 (ENSCPOG00000010152)	MTIF3 (ENSCPOG00000010148)	GTF3A (ENSCPOG00000010143)	RASL11A (ENSCPOG00000031264)	ENSCPOG00000008784	USP12 (ENSCPOG00000005241)	ENSCPOG00000020112 #22	WASF3 (ENSCPOG00000010156)	CDK8 (ENSCPOG00000040435)	RNF6 (ENSCPOG00000009120)	SHISA2 (ENSCPOG00000009049)	ATP8A2 (ENSCPOG00000032003)	NUP58 (ENSCPOG00000012295)	MTMR6 (ENSCPOG00000007270)	AMER2 (ENSCPOG00000014858)	ENSCPOG00000031549	ENSCPOG00000014970	ENSCPOG00000038067	ENSCPOG00000004523	MIPEP (ENSCPOG00000004508)	TNFRSF19 (ENSCPOG00000012054)	SACS (ENSCPOG00000038995)
Hystricomorpha_b	ANCESTRAL SPECIES	33	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958.y #28	ENSGT00810000125473.A.f #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Long-tailed chinchilla	MODERN SPECIES	131	ANTXR1 (ENSCLAG00000011983) #8	ENSCLAG00000010348	GKN1 (ENSCLAG00000010820) #9	GKN2 (ENSCLAG00000015981) #10	ENSCLAG00000007045 #11	BMP10 (ENSCLAG00000007285) #12	ARHGAP25 (ENSCLAG00000007583) #13	PROKR1 (ENSCLAG00000008825) #14	APLF (ENSCLAG00000009519) #15	FBXO48 (ENSCLAG00000010201) #16	PLEK (ENSCLAG00000010835) #17	CNRIP1 (ENSCLAG00000012035) #18	PPP3R1 (ENSCLAG00000012159) #19	PNO1 (ENSCLAG00000015058) #20	DNAAF10 (ENSCLAG00000014702) #21	C1D (ENSCLAG00000011883) #22	ETAA1 (ENSCLAG00000013575) #23	MEIS1 (ENSCLAG00000010420) #24	SPRED2 (ENSCLAG00000011449) #25	ACTR2 (ENSCLAG00000010920) #27	RAB1A (ENSCLAG00000014766) #28	CEP68 (ENSCLAG00000012193) #29	SLC1A4 (ENSCLAG00000008207) #30	SERTAD2 (ENSCLAG00000008318) #31	AFTPH (ENSCLAG00000012032) #32	ENSCLAG00000012344	LGALSL (ENSCLAG00000015114) #34	PELI1 (ENSCLAG00000006481) #35	VPS54 (ENSCLAG00000007366) #36	UGP2 (ENSCLAG00000010416) #37	MDH1 (ENSCLAG00000007815)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	252	ENSODEG00000019014	ENSODEG00000004065	UBQLN2 (ENSODEG00000004078)	ENSODEG00000004091	FAAH2 (ENSODEG00000002562)	ENSODEG00000002584	ENSODEG00000002601	SPIN4 (ENSODEG00000018809)	ARHGEF9 (ENSODEG00000002707)	ENSODEG00000002920	ENSODEG00000002930	ASB12 (ENSODEG00000002937)	ENSODEG00000018865	ZC4H2 (ENSODEG00000002954)	ENSODEG00000002966	ENSODEG00000018885 #22	ENSODEG00000002977	LAS1L (ENSODEG00000003001)	ENSODEG00000003056	MSN (ENSODEG00000003097)	HEPH (ENSODEG00000003182)	ENSODEG00000002647	ENSODEG00000002660
Degu	MODERN SPECIES	119						BMP10 (ENSODEG00000010621) #12	ARHGAP25 (ENSODEG00000012290) #13	PROKR1 (ENSODEG00000011030) #14	FBXO48 (ENSODEG00000011400) #16	PLEK (ENSODEG00000011044) #17	CNRIP1 (ENSODEG00000011175) #18	PPP3R1 (ENSODEG00000012397) #19	PNO1 (ENSODEG00000011769) #20	ENSODEG00000011043 #21	ENSODEG00000019812	ENSODEG00000011242 #22	MEIS1 (ENSODEG00000012314) #24	ENSODEG00000012312	SPRED2 (ENSODEG00000012243) #25	ENSODEG00000010956 #27	ENSODEG00000011248 #28	SLC1A4 (ENSODEG00000011406) #30	SERTAD2 (ENSODEG00000011523) #31	ENSODEG00000011805 #32	LGALSL (ENSODEG00000011485) #34	ENSODEG00000011901	PELI1 (ENSODEG00000011189) #35	VPS54 (ENSODEG00000012541) #36	ENSODEG00000011552 #37	ENSODEG00000012736	MDH1 (ENSODEG00000011582)
Degu	MODERN SPECIES	349																ENSODEG00000018525 #22	ENSODEG00000000080	ENSODEG00000000051	LDOC1 (ENSODEG00000018520)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	23	BMP10 (ENSHGLG00000036573) #12	ENSHGLG00000032377	ARHGAP25 (ENSHGLG00000018071) #13	ENSHGLG00000018073	PROKR1 (ENSHGLG00000034888) #14	ENSHGLG00000005135	APLF (ENSHGLG00000042896) #15	FBXO48 (ENSHGLG00000044023) #16	ENSHGLG00000000426	PLEK (ENSHGLG00000019154) #17	CNRIP1 (ENSHGLG00000045252) #18	ENSHGLG00000047583	PPP3R1 (ENSHGLG00000044041) #19	PNO1 (ENSHGLG00000045522) #20	DNAAF10 (ENSHGLG00000012153) #21	ENSHGLG00000012332 #22	ETAA1 (ENSHGLG00000040625) #23	ENSHGLG00000020742	MEIS1 (ENSHGLG00000012586) #24	ENSHGLG00000013407	ENSHGLG00000041829	ENSHGLG00000034618	ENSHGLG00000042711 #25	ENSHGLG00000037092	RAB1A (ENSHGLG00000045077) #28	CEP68 (ENSHGLG00000018361) #29	ENSHGLG00000048375 #29	SLC1A4 (ENSHGLG00000036619) #30	ENSHGLG00000049432	ENSHGLG00000047996 #31	ENSHGLG00000004348
Naked mole-rat female	MODERN SPECIES	25	PHAX (ENSHGLG00000004831)	TEX43 (ENSHGLG00000004450)	ENSHGLG00000049826	LMNB1 (ENSHGLG00000004108)	MARCHF3 (ENSHGLG00000008182)	ENSHGLG00000007860	ENSHGLG00000006892	MEGF10 (ENSHGLG00000004334)	PRRC1 (ENSHGLG00000007825)	CTXN3 (ENSHGLG00000033128)	ENSHGLG00000006109	ENSHGLG00000040466	ENSHGLG00000017787	ENSHGLG00000035543	ENSHGLG00000016039	ENSHGLG00000021219 #22	ENSHGLG00000033624	ENSHGLG00000014868	ENSHGLG00000014826	ENSHGLG00000045516	ENSHGLG00000014767	ADAMTS19 (ENSHGLG00000015411)	MINAR2 (ENSHGLG00000015376)	ENSHGLG00000011633	ENSHGLG00000044750	ENSHGLG00000004498	ENSHGLG00000039649	ENSHGLG00000045312	ENSHGLG00000040996	ENSHGLG00000016330	ENSHGLG00000007766
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	10	PHTF1 (ENSHGLG00000015252)	MAGI3 (ENSHGLG00000005209)	ENSHGLG00000035626	LRIG2 (ENSHGLG00000016354)	ENSHGLG00000016346	ENSHGLG00000034195	TAFA3 (ENSHGLG00000018506)	PPM1J (ENSHGLG00000009548)	RHOC (ENSHGLG00000032070)	MOV10 (ENSHGLG00000004970)	ENSHGLG00000045694	ST7L (ENSHGLG00000018040)	WNT2B (ENSHGLG00000014959)	ENSHGLG00000003197	ENSHGLG00000016608	ENSHGLG00000042226 #22	ENSHGLG00000017681	ENSHGLG00000038826	ENSHGLG00000017438	DDX20 (ENSHGLG00000014848)	FAM212B (ENSHGLG00000032533)	RAP1A (ENSHGLG00000008139)	ADORA3 (ENSHGLG00000006832)	ENSHGLG00000004637	ENSHGLG00000041308	ENSHGLG00000004364	WDR77 (ENSHGLG00000008077)	ENSHGLG00000036915	PIFO (ENSHGLG00000048487)	DENND2D (ENSHGLG00000007550)	CEPT1 (ENSHGLG00000004650)
Naked mole-rat female	MODERN SPECIES	15	ENSHGLG00000014562	ENSHGLG00000010731	ENSHGLG00000047297	MGRN1 (ENSHGLG00000010412)	ENSHGLG00000009414	ENSHGLG00000041110	ENSHGLG00000006338	ENSHGLG00000047672	HMOX2 (ENSHGLG00000018687)	NMRAL1 (ENSHGLG00000015280)	DNAJA3 (ENSHGLG00000013833)	CORO7 (ENSHGLG00000013215)	VASN (ENSHGLG00000018390)	ENSHGLG00000017996	TFAP4 (ENSHGLG00000013646)	ENSHGLG00000034539 #22	SRL (ENSHGLG00000048431)	ADCY9 (ENSHGLG00000048109)	CREBBP (ENSHGLG00000005467)	TRAP1 (ENSHGLG00000010156)	DNASE1 (ENSHGLG00000006355)	ENSHGLG00000038589	SLX4 (ENSHGLG00000011119)	ENSHGLG00000015072	CLUAP1 (ENSHGLG00000014230)	ENSHGLG00000042398	NAA60 (ENSHGLG00000017748)	ENSHGLG00000042314	ZNF597 (ENSHGLG00000015048)	ZNF174 (ENSHGLG00000045867)	OR2C1 (ENSHGLG00000020935)
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Myomorpha	ANCESTRAL SPECIES	24										ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Muroidea	ANCESTRAL SPECIES	21										ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1297																ENSNGAG00000012482 #22
Upper Galilee mountains blind mole rat	MODERN SPECIES	681																ENSNGAG00000016675 #22
Upper Galilee mountains blind mole rat	MODERN SPECIES	859										Plek (ENSNGAG00000020332) #17	Cnrip1 (ENSNGAG00000019719) #18	Ppp3r1 (ENSNGAG00000012099) #19	Pno1 (ENSNGAG00000010165) #20	ENSNGAG00000003050	ENSNGAG00000011329 #21	ENSNGAG00000011872 #22	Etaa1 (ENSNGAG00000010247) #23	Meis1 (ENSNGAG00000013041) #24
Upper Galilee mountains blind mole rat	MODERN SPECIES	1632	ENSNGAG00000014038	Fyn (ENSNGAG00000016902)	ENSNGAG00000019953	ENSNGAG00000020681	ENSNGAG00000021428	ENSNGAG00000012433	ENSNGAG00000023631	ENSNGAG00000011554	ENSNGAG00000002531	ENSNGAG00000010243	ENSNGAG00000013330	ENSNGAG00000016951	Slc16a10 (ENSNGAG00000021488)	Rpf2 (ENSNGAG00000009701)	Gtf3c6 (ENSNGAG00000021709)	ENSNGAG00000021902 #22	ENSNGAG00000022433	Cdk19 (ENSNGAG00000006946)	ENSNGAG00000012844	Slc22a16 (ENSNGAG00000020774)	Ddo (ENSNGAG00000022302)	Mettl24 (ENSNGAG00000022579)	Cdc40 (ENSNGAG00000023120)	Wasf1 (ENSNGAG00000023356)	Gpr6 (ENSNGAG00000012257)	Fig4 (ENSNGAG00000024069)	ENSNGAG00000017704	ENSNGAG00000019232	Zbtb24 (ENSNGAG00000021255)	Mical1 (ENSNGAG00000023875)	Smpd2 (ENSNGAG00000013670)
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000156004	ENSGT00940000155909	ENSGT00530000063608.A	ENSGT00940000160556	ENSGT00390000001319	ENSGT00940000155450	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000156004	ENSGT00940000155909	ENSGT00530000063608.A	ENSGT00940000160556	ENSGT00390000001319	ENSGT00940000155450	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.s #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Mus	ANCESTRAL SPECIES	14	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000156004	ENSGT00940000155909	ENSGT00530000063608.A	ENSGT00940000160556	ENSGT00390000001319	ENSGT00940000155450	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.s #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000156004	ENSGT00940000155909	ENSGT00530000063608.A	ENSGT00940000160556	ENSGT00390000001319.cb	ENSGT00940000155450	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.s #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000156004	ENSGT00940000155909	ENSGT00530000063608.A	ENSGT00940000160556	ENSGT00390000001319.cb	ENSGT00940000155450	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.s #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Mouse	MODERN SPECIES	2	Ikzf1 (ENSMUSG00000018654)	Fignl1 (ENSMUSG00000035455)	Ddc (ENSMUSG00000020182)	Grb10 (ENSMUSG00000020176)	Cobl (ENSMUSG00000020173)	Pom121l12 (ENSMUSG00000084135)	Vstm2a (ENSMUSG00000048834)	Sec61g (ENSMUSG00000078974)	Egfr (ENSMUSG00000020122)	Fbxo48 (ENSMUSG00000044966) #16	Plek (ENSMUSG00000020120) #17	Cnrip1 (ENSMUSG00000044629) #18	Ppp3r1 (ENSMUSG00000033953) #19	Dnaaf10 (ENSMUSG00000078970) #21	Pno1 (ENSMUSG00000020116) #20	C1d (ENSMUSG00000000581) #22	Etaa1 (ENSMUSG00000016984) #23	Meis1 (ENSMUSG00000020160) #24	Spred2 (ENSMUSG00000045671) #25	Actr2 (ENSMUSG00000020152) #27	Rab1a (ENSMUSG00000020149) #28	Cep68 (ENSMUSG00000044066) #29	Slc1a4 (ENSMUSG00000020142) #30	Sertad2 (ENSMUSG00000049800) #31	Aftph (ENSMUSG00000049659) #32	Lgalsl (ENSMUSG00000042363) #34	Peli1 (ENSMUSG00000020134) #35	Vps54 (ENSMUSG00000020128) #36	Ugp2 (ENSMUSG00000001891) #37	Mdh1 (ENSMUSG00000020321)	Wdpcp (ENSMUSG00000020319)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000156004	ENSGT00940000155909	ENSGT00530000063608.A	ENSGT00940000160556	ENSGT00390000001319.cb	ENSGT00940000155450	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052.s #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
spretus	MODERN SPECIES	2	Spata48 (MGP_SPRETEiJ_G0016937)	Ikzf1 (MGP_SPRETEiJ_G0016938)	Fignl1 (MGP_SPRETEiJ_G0016939)	Ddc (MGP_SPRETEiJ_G0016940)	Grb10 (MGP_SPRETEiJ_G0016941)	Cobl (MGP_SPRETEiJ_G0016942)	MGP_SPRETEiJ_G0016943	Sec61g (MGP_SPRETEiJ_G0016944)	Egfr (MGP_SPRETEiJ_G0016945)	Fbxo48 (MGP_SPRETEiJ_G0016946) #16	Plek (MGP_SPRETEiJ_G0016947) #17	MGP_SPRETEiJ_G0016948 #18	Ppp3r1 (MGP_SPRETEiJ_G0016949) #19	Dnaaf10 (MGP_SPRETEiJ_G0016950) #21	Pno1 (MGP_SPRETEiJ_G0016951) #20	C1d (MGP_SPRETEiJ_G0016952) #22	Etaa1 (MGP_SPRETEiJ_G0016953) #23	Meis1 (MGP_SPRETEiJ_G0016954) #24	Asb12 (MGP_SPRETEiJ_G0016955)	Spred2 (MGP_SPRETEiJ_G0016956) #25	Actr2 (MGP_SPRETEiJ_G0016957) #27	Rab1a (MGP_SPRETEiJ_G0016958) #28	Cep68 (MGP_SPRETEiJ_G0016959) #29	Slc1a4 (MGP_SPRETEiJ_G0016960) #30	Sertad2 (MGP_SPRETEiJ_G0016961) #31	Aftph (MGP_SPRETEiJ_G0016962) #32	Lgalsl (MGP_SPRETEiJ_G0016963) #34	Peli1 (MGP_SPRETEiJ_G0016964) #35	Vps54 (MGP_SPRETEiJ_G0016965) #36	Ugp2 (MGP_SPRETEiJ_G0016966) #37	Mdh1 (MGP_SPRETEiJ_G0016967)
Steppe mouse	MODERN SPECIES	2972							ENSMSIG00000001187	ENSMSIG00000001156	Egfr (ENSMSIG00000001122)	Fbxo48 (ENSMSIG00000001105) #16	Plek (ENSMSIG00000001053) #17	ENSMSIG00000001023 #18	ENSMSIG00000000988 #19	ENSMSIG00000000962 #20	Dnaaf10 (ENSMSIG00000000934) #21	C1d (ENSMSIG00000000910) #22	Etaa1 (ENSMSIG00000000849) #23	ENSMSIG00000000838
Ryukyu mouse	MODERN SPECIES	2	Spata48 (MGP_CAROLIEiJ_G0016095)	Ikzf1 (MGP_CAROLIEiJ_G0016096)	Fignl1 (MGP_CAROLIEiJ_G0016097)	Ddc (MGP_CAROLIEiJ_G0016098)	Grb10 (MGP_CAROLIEiJ_G0016099)	Cobl (MGP_CAROLIEiJ_G0016100)	MGP_CAROLIEiJ_G0016101	Sec61g (MGP_CAROLIEiJ_G0016102)	Egfr (MGP_CAROLIEiJ_G0016103)	Fbxo48 (MGP_CAROLIEiJ_G0016104) #16	Plek (MGP_CAROLIEiJ_G0016105) #17	Cnrip1 (MGP_CAROLIEiJ_G0016106) #18	Ppp3r1 (MGP_CAROLIEiJ_G0016107) #19	Dnaaf10 (MGP_CAROLIEiJ_G0016108) #21	Pno1 (MGP_CAROLIEiJ_G0016109) #20	C1d (MGP_CAROLIEiJ_G0016110) #22	Etaa1 (MGP_CAROLIEiJ_G0016111) #23	Meis1 (MGP_CAROLIEiJ_G0016112) #24	Spred2 (MGP_CAROLIEiJ_G0016113) #25	Actr2 (MGP_CAROLIEiJ_G0016114) #27	Rab1a (MGP_CAROLIEiJ_G0016115) #28	Cep68 (MGP_CAROLIEiJ_G0016116) #29	Slc1a4 (MGP_CAROLIEiJ_G0016117) #30	Sertad2 (MGP_CAROLIEiJ_G0016118) #31	Aftph (MGP_CAROLIEiJ_G0016119) #32	Gm5065 (MGP_CAROLIEiJ_G0016120) #34	Peli1 (MGP_CAROLIEiJ_G0016121) #35	Vps54 (MGP_CAROLIEiJ_G0016122) #36	Ugp2 (MGP_CAROLIEiJ_G0016123) #37	Mdh1 (MGP_CAROLIEiJ_G0016124)	Wdpcp (MGP_CAROLIEiJ_G0016125)
Shrew mouse	MODERN SPECIES	4	Spata48 (MGP_PahariEiJ_G0016796)	Ikzf1 (MGP_PahariEiJ_G0016795)	Fignl1 (MGP_PahariEiJ_G0016794)	Ddc (MGP_PahariEiJ_G0016793)	Grb10 (MGP_PahariEiJ_G0016792)	Cobl (MGP_PahariEiJ_G0016791)	MGP_PahariEiJ_G0016790	Sec61g (MGP_PahariEiJ_G0016789)	Egfr (MGP_PahariEiJ_G0016788)	Fbxo48 (MGP_PahariEiJ_G0016787) #16	Plek (MGP_PahariEiJ_G0016786) #17	MGP_PahariEiJ_G0016785 #18	Ppp3r1 (MGP_PahariEiJ_G0016784) #19	Pno1 (MGP_PahariEiJ_G0016783) #20	Dnaaf10 (MGP_PahariEiJ_G0016782) #21	C1d (MGP_PahariEiJ_G0016781) #22	Etaa1 (MGP_PahariEiJ_G0016780) #23	Meis1 (MGP_PahariEiJ_G0016779) #24	Spred2 (MGP_PahariEiJ_G0016778) #25	Actr2 (MGP_PahariEiJ_G0016777) #27	Rab1a (MGP_PahariEiJ_G0016776) #28	Cep68 (MGP_PahariEiJ_G0016775) #29	Slc1a4 (MGP_PahariEiJ_G0016774) #30	Sertad2 (MGP_PahariEiJ_G0016773) #31	Aftph (MGP_PahariEiJ_G0016772) #32	Lgalsl (MGP_PahariEiJ_G0016771) #34	MGP_PahariEiJ_G0016770 #34	Peli1 (MGP_PahariEiJ_G0016769) #35	Vps54 (MGP_PahariEiJ_G0016768) #36	Ugp2 (MGP_PahariEiJ_G0016767) #37	Mdh1 (MGP_PahariEiJ_G0016766)
Rat	MODERN SPECIES	5	Zpbp (ENSRNOG00000027801)	Spata48 (ENSRNOG00000037621)	Ikzf1 (ENSRNOG00000004444)	Fignl1 (ENSRNOG00000004440)	Ddc (ENSRNOG00000004327)	Grb10 (ENSRNOG00000004290)	Cobl (ENSRNOG00000004281)	LOC100361025 (ENSRNOG00000004090)	Vstm2a (ENSRNOG00000005180)	Sec61g (ENSRNOG00000005203)	Egfr (ENSRNOG00000004332)	Fbxo48 (ENSRNOG00000023026) #16	Plek (ENSRNOG00000005214) #17	Cnrip1 (ENSRNOG00000005326) #18	Pno1 (ENSRNOG00000005524) #20	C1d (ENSRNOG00000005982) #22	Hnrnpk-ps1 (ENSRNOG00000063529)	Etaa1l1 (ENSRNOG00000006185) #23	Meis1 (ENSRNOG00000004606) #24	Spred2 (ENSRNOG00000004888) #25	Actr2 (ENSRNOG00000004959) #27	AABR07016566.1 (ENSRNOG00000051648)	ENSRNOG00000070133	Rpl38 (ENSRNOG00000033686)	Rab1a (ENSRNOG00000004992) #28	Cep68 (ENSRNOG00000027282) #29	Slc1a4 (ENSRNOG00000005248) #30	Sertad2 (ENSRNOG00000005393) #31	Aftph (ENSRNOG00000005411) #32	LOC108352861 (ENSRNOG00000029052)	Lgalsl (ENSRNOG00000005464) #34
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000156004	ENSGT00940000155909	ENSGT00530000063608.A	ENSGT00940000160556	ENSGT00390000001319	ENSGT00940000155450	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Cricetinae	ANCESTRAL SPECIES	37	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000156004	ENSGT00940000155909	ENSGT00530000063608.A	ENSGT00940000160556	ENSGT00390000001319	ENSGT00940000155450	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Chinese hamster chok1gshd	MODERN SPECIES	121	Ikzf1 (ENSCGRG00001015985)	Fignl1 (ENSCGRG00001005568)	Ddc (ENSCGRG00001020321)	Grb10 (ENSCGRG00001018605)	Cobl (ENSCGRG00001015912)	ENSCGRG00001016899	Vstm2a (ENSCGRG00001018623)	ENSCGRG00001010828	Egfr (ENSCGRG00001020721)	Fbxo48 (ENSCGRG00001017787) #16	Plek (ENSCGRG00001023663) #17	Cnrip1 (ENSCGRG00001014944) #18	Ppp3r1 (ENSCGRG00001020769) #19	ENSCGRG00001007472 #20	ENSCGRG00001017610 #21	C1d (ENSCGRG00001023376) #22	Etaa1 (ENSCGRG00001020354) #23	Meis1 (ENSCGRG00001009447) #24	Spred2 (ENSCGRG00001015924) #25	ENSCGRG00001017243 #27	ENSCGRG00001012691 #28	Cep68 (ENSCGRG00001014327) #29	Slc1a4 (ENSCGRG00001017715) #30	ENSCGRG00001005474	Sertad2 (ENSCGRG00001009657) #31	Aftph (ENSCGRG00001016162) #32	ENSCGRG00001009126	Gm5065 (ENSCGRG00001013868) #34	Peli1 (ENSCGRG00001021958) #35	Vps54 (ENSCGRG00001009286) #36	UGP2 (ENSCGRG00001012845) #37
Golden Hamster	MODERN SPECIES	639	Prep (ENSMAUG00000009728)	Popdc3 (ENSMAUG00000000723)	Bves (ENSMAUG00000001250)	Lin28b (ENSMAUG00000006523)	Hace1 (ENSMAUG00000012759)	Grik2 (ENSMAUG00000012525)	Ascc3 (ENSMAUG00000018304)	Sim1 (ENSMAUG00000021356)	Egfr (ENSMAUG00000000581)	Fbxo48 (ENSMAUG00000020533) #16	Plek (ENSMAUG00000011299) #17	Cnrip1 (ENSMAUG00000019592) #18	Ppp3r1 (ENSMAUG00000014614) #19	Pno1 (ENSMAUG00000014995) #20	Dnaaf10 (ENSMAUG00000011603) #21	C1d (ENSMAUG00000008974) #22	Etaa1 (ENSMAUG00000010594) #23	Meis1 (ENSMAUG00000001130) #24	Spred2 (ENSMAUG00000013657) #25	Actr2 (ENSMAUG00000008458) #27	Rab1a (ENSMAUG00000012156) #28	Cep68 (ENSMAUG00000014820) #29	Slc1a4 (ENSMAUG00000019775) #30	Sertad2 (ENSMAUG00000004242) #31	Aftph (ENSMAUG00000016557) #32	ENSMAUG00000015033 #34	Peli1 (ENSMAUG00000012937) #35	Vps54 (ENSMAUG00000010788) #36	ENSMAUG00000012689 #37	Mdh1 (ENSMAUG00000018086)	ENSMAUG00000012018
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000156004	ENSGT00940000155909	ENSGT00530000063608.A	ENSGT00940000160556	ENSGT00390000001319	ENSGT00940000155450	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00390000001858	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	1	Fignl1 (ENSPEMG00000006051)	Ddc (ENSPEMG00000006473)	Grb10 (ENSPEMG00000014827)	Cobl (ENSPEMG00000012700)	ENSPEMG00000027900	ENSPEMG00000030198	Vstm2a (ENSPEMG00000028365)	Sec61g (ENSPEMG00000020941)	Egfr (ENSPEMG00000012745)	Fbxo48 (ENSPEMG00000023069) #16	Plek (ENSPEMG00000022796) #17	Cnrip1 (ENSPEMG00000031287) #18	Ppp3r1 (ENSPEMG00000021806) #19	Pno1 (ENSPEMG00000022989) #20	Dnaaf10 (ENSPEMG00000022118) #21	ENSPEMG00000026465 #22	Etaa1 (ENSPEMG00000011918) #23	Meis1 (ENSPEMG00000008113) #24	ENSPEMG00000012914	ENSPEMG00000028236	Spred2 (ENSPEMG00000029042) #25	Actr2 (ENSPEMG00000015727) #27	ENSPEMG00000025517	Rab1a (ENSPEMG00000009340) #28	Cep68 (ENSPEMG00000002161) #29	Slc1a4 (ENSPEMG00000018063) #30	ENSPEMG00000016241	Sertad2 (ENSPEMG00000027852) #31	Aftph (ENSPEMG00000010156) #32	ENSPEMG00000015267 #34	Peli1 (ENSPEMG00000030617) #35
Northern American deer mouse	MODERN SPECIES	19	ENSPEMG00000028727	S100a11 (ENSPEMG00000027141)	Tchhl1 (ENSPEMG00000023251)	ENSPEMG00000009460	ENSPEMG00000029220	ENSPEMG00000027135	Crnn (ENSPEMG00000015891)	Lce1m (ENSPEMG00000028998)	Crct1 (ENSPEMG00000025851)	ENSPEMG00000025047	ENSPEMG00000030519	ENSPEMG00000028390	ENSPEMG00000024567	ENSPEMG00000007888	Kprp (ENSPEMG00000003567)	ENSPEMG00000002108 #22	ENSPEMG00000030283	Lce1c (ENSPEMG00000028111)	Lce1a2 (ENSPEMG00000029139)	ENSPEMG00000026947	ENSPEMG00000007711	Lce6a (ENSPEMG00000016704)	2210017I01Rik (ENSPEMG00000024783)	Smcp (ENSPEMG00000015179)	ENSPEMG00000019081	2310046K23Rik (ENSPEMG00000006761)	Sprr4 (ENSPEMG00000007005)	Sprr1a (ENSPEMG00000024164)	Sprr3 (ENSPEMG00000009049)	ENSPEMG00000007864	ENSPEMG00000008123
Prairie vole	MODERN SPECIES	92				Pom121l12 (ENSMOCG00000017420)	ENSMOCG00000002960	Vstm2a (ENSMOCG00000004039)	ENSMOCG00000001784	ENSMOCG00000004092	Egfr (ENSMOCG00000000900)	Fbxo48 (ENSMOCG00000015915) #16	Plek (ENSMOCG00000018168) #17	Cnrip1 (ENSMOCG00000004432) #18	Ppp3r1 (ENSMOCG00000012867) #19	Pno1 (ENSMOCG00000017268) #20	Dnaaf10 (ENSMOCG00000000313) #21	C1d (ENSMOCG00000010860) #22	Etaa1 (ENSMOCG00000018537) #23	Meis1 (ENSMOCG00000016359) #24	Spred2 (ENSMOCG00000014005) #25	Actr2 (ENSMOCG00000008248) #27	Rab1a (ENSMOCG00000017022) #28	Cep68 (ENSMOCG00000003444) #29	Slc1a4 (ENSMOCG00000001173) #30	Sertad2 (ENSMOCG00000002173) #31	Aftph (ENSMOCG00000015081) #32	ENSMOCG00000003932	Gm5065 (ENSMOCG00000014300) #34	Peli1 (ENSMOCG00000016437) #35	Vps54 (ENSMOCG00000009563) #36	Ugp2 (ENSMOCG00000009715) #37	Mdh1 (ENSMOCG00000015448)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	60	ENSJJAG00000017667	Plaat3 (ENSJJAG00000021915)	Lgals12 (ENSJJAG00000014881)	Plaat5 (ENSJJAG00000020253)	ENSJJAG00000010614	Slc22a8 (ENSJJAG00000023072)	Slc22a6 (ENSJJAG00000009093)	Chrm1 (ENSJJAG00000013856)	ENSJJAG00000001125	Wdr74 (ENSJJAG00000001449)	Stx5a (ENSJJAG00000023191)	Nxf1 (ENSJJAG00000017480)	Tmem223 (ENSJJAG00000020948)	Tmem179b (ENSJJAG00000010561)	Taf6l (ENSJJAG00000017255)	ENSJJAG00000009540 #22	Polr2g (ENSJJAG00000005019)	Zbtb3 (ENSJJAG00000024243)	ENSJJAG00000008957	Hnrnpul2 (ENSJJAG00000011206)	Gng3 (ENSJJAG00000015400)	ENSJJAG00000019301	Ubxn1 (ENSJJAG00000012631)	Uqcc3 (ENSJJAG00000022865)	ENSJJAG00000011273	1810009A15Rik (ENSJJAG00000010598)	Ints5 (ENSJJAG00000013000)	Ganab (ENSJJAG00000024016)	B3gat3 (ENSJJAG00000023873)	Rom1 (ENSJJAG00000016209)	Eml3 (ENSJJAG00000001007)
Lesser Egyptian jerboa	MODERN SPECIES	74	Hnrnpll (ENSJJAG00000024192)	Kidins220 (ENSJJAG00000015011)	Mboat2 (ENSJJAG00000011516)	Asap2 (ENSJJAG00000001039)	Itgb1bp1 (ENSJJAG00000022716)	Cpsf3 (ENSJJAG00000023415)	Iah1 (ENSJJAG00000015466)	Adam17 (ENSJJAG00000020057)	Ywhaq (ENSJJAG00000008194)	ENSJJAG00000011210 #16	Plek (ENSJJAG00000005757) #17	Cnrip1 (ENSJJAG00000016204) #18	Ppp3r1 (ENSJJAG00000016869) #19	Pno1 (ENSJJAG00000022862) #20	Dnaaf10 (ENSJJAG00000019935) #21	ENSJJAG00000023186 #22	ENSJJAG00000021064	ENSJJAG00000011226 #23	Meis1 (ENSJJAG00000015459) #24	Spred2 (ENSJJAG00000020977) #25	Actr2 (ENSJJAG00000008642) #27	Rab1a (ENSJJAG00000014396) #28	Cep68 (ENSJJAG00000016421) #29	Slc1a4 (ENSJJAG00000002418) #30	Sertad2 (ENSJJAG00000015989) #31	ENSJJAG00000020384 #32	Gm5065 (ENSJJAG00000016772) #34	Peli1 (ENSJJAG00000000296) #35	Vps54 (ENSJJAG00000012401) #36	Ugp2 (ENSJJAG00000014432) #37	Mdh1 (ENSJJAG00000024369)
Lesser Egyptian jerboa	MODERN SPECIES	59	Gpt (ENSJJAG00000005755)	Mfsd3 (ENSJJAG00000014614)	Recql4 (ENSJJAG00000017588)	Lrrc14 (ENSJJAG00000013498)	Lrrc24 (ENSJJAG00000020237)	C030006K11Rik (ENSJJAG00000019946)	ENSJJAG00000014100	ENSJJAG00000015424	ENSJJAG00000023749	ENSJJAG00000016143	ENSJJAG00000006705	ENSJJAG00000008974	Zfp647 (ENSJJAG00000012017)	ENSJJAG00000000364	Lratd2 (ENSJJAG00000010787)	ENSJJAG00000016086 #22	Myc (ENSJJAG00000012619)	ENSJJAG00000021929	ENSJJAG00000023137	Cyrib (ENSJJAG00000016929)	Asap1 (ENSJJAG00000012834)	ENSJJAG00000010599	Adcy8 (ENSJJAG00000018781)	ENSJJAG00000019381	ENSJJAG00000022288	ENSJJAG00000018526	Efr3a (ENSJJAG00000023636)	ENSJJAG00000018417	Oc90 (ENSJJAG00000018951)	Hhla1 (ENSJJAG00000010797)	Kcnq3 (ENSJJAG00000004354)
Lesser Egyptian jerboa	MODERN SPECIES	62	Ing2 (ENSJJAG00000022521)	ENSJJAG00000022133	Trappc11 (ENSJJAG00000021365)	Dlc1 (ENSJJAG00000015251)	Sgcz (ENSJJAG00000017689)	Tusc3 (ENSJJAG00000017924)	ENSJJAG00000020899	Msr1 (ENSJJAG00000010232)	ENSJJAG00000015563	ENSJJAG00000000989	Slc25a31 (ENSJJAG00000024076)	ENSJJAG00000024038	Hspa4l (ENSJJAG00000003598)	ENSJJAG00000022058	ENSJJAG00000023142	ENSJJAG00000005044 #22	Mfsd8 (ENSJJAG00000010896)	Larp1b (ENSJJAG00000022360)
Kangaroo rat	MODERN SPECIES	382	Gfpt1 (ENSDORG00000015980) #7	Antxr1 (ENSDORG00000026824) #8	Gkn1 (ENSDORG00000013219) #9	Gkn2 (ENSDORG00000015532) #10	Gkn3 (ENSDORG00000029528) #11	Bmp10 (ENSDORG00000012857) #12	Arhgap25 (ENSDORG00000012856) #13	ENSDORG00000012853 #14	Aplf (ENSDORG00000011241) #15	Fbxo48 (ENSDORG00000011239) #16	Plek (ENSDORG00000029923) #17	Cnrip1 (ENSDORG00000025749) #18	Ppp3r1 (ENSDORG00000024931) #19	ENSDORG00000006867 #20	Dnaaf10 (ENSDORG00000006862) #21	C1d (ENSDORG00000003300) #22	Meis1 (ENSDORG00000008334) #24	Spred2 (ENSDORG00000012174) #25	Actr2 (ENSDORG00000001487) #27	ENSDORG00000028628 #28	Cep68 (ENSDORG00000002111) #29	Slc1a4 (ENSDORG00000002394) #30	Sertad2 (ENSDORG00000025954) #31	ENSDORG00000027058	ENSDORG00000004159 #32	ENSDORG00000027919 #34	Peli1 (ENSDORG00000025404) #35	Vps54 (ENSDORG00000009782) #36	Ugp2 (ENSDORG00000013164) #37	Rasl2-9 (ENSDORG00000027038)	Mdh1 (ENSDORG00000000099)
Lagomorpha	ANCESTRAL SPECIES	10	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556.lb.a #27	ENSGT00940000154958 #28	ENSGT00810000125473.A #29	ENSGT00940000157081 #30	ENSGT00530000063867.b #31	ENSGT00940000154186.a #32	ENSGT00940000155337 #34	ENSGT00950000183050.b.b.a #35	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Pika	MODERN SPECIES	4384										APLF (ENSOPRG00000009700) #15	FBXO48 (ENSOPRG00000009690) #16	PLEK (ENSOPRG00000009671) #17	CNRIP1 (ENSOPRG00000009658) #18	PNO1 (ENSOPRG00000009643) #20	ENSOPRG00000009593 #21	C1D (ENSOPRG00000009586) #22
Rabbit	DUPLICATION
Rabbit	DUPLICATION
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES		SLC31A2 (ENSOCUG00000026691)	ZFP37 (ENSOCUG00000029203)	ENSOCUG00000026544	SLC46A2 (ENSOCUG00000009840)	SNX30 (ENSOCUG00000009834)	INIP (ENSOCUG00000016717)	KIAA1958 (ENSOCUG00000016711)	HSDL2 (ENSOCUG00000016808)	PTBP3 (ENSOCUG00000017670)	SUSD1 (ENSOCUG00000010435)	ENSOCUG00000021292	UGCG (ENSOCUG00000014366)	SHOC1 (ENSOCUG00000016284)	ENSOCUG00000031538	DNAJC25 (ENSOCUG00000008533)	ENSOCUG00000025587 #22	PTGR1 (ENSOCUG00000004879)	ENSOCUG00000004283	ENSOCUG00000030397	ECPAS (ENSOCUG00000004268)	ENSOCUG00000036935	LPAR1 (ENSOCUG00000026842)	MUSK (ENSOCUG00000017885)	SVEP1 (ENSOCUG00000016227)	ENSOCUG00000029370	TXN (ENSOCUG00000030643)	C9orf152 (ENSOCUG00000025279)	ENSOCUG00000025387	PTPN3 (ENSOCUG00000001034)	ENSOCUG00000039438	EPB41L4B (ENSOCUG00000016177)
Rabbit	MODERN SPECIES	11	GFPT1 (ENSOCUG00000029568) #7	ANTXR1 (ENSOCUG00000010232) #8	GKN1 (ENSOCUG00000010230) #9	ENSOCUG00000010225 #10	ENSOCUG00000024440 #11	BMP10 (ENSOCUG00000010221) #12	ARHGAP25 (ENSOCUG00000010212) #13	PROKR1 (ENSOCUG00000026978) #14	APLF (ENSOCUG00000006121) #15	FBXO48 (ENSOCUG00000006116) #16	PLEK (ENSOCUG00000006113) #17	CNRIP1 (ENSOCUG00000006109) #18	PPP3R1 (ENSOCUG00000027562) #19	ENSOCUG00000006100 #20	DNAAF10 (ENSOCUG00000006087) #21	ENSOCUG00000009771 #22	ETAA1 (ENSOCUG00000001812) #23	MEIS1 (ENSOCUG00000001842) #24	ENSOCUG00000034052	SPRED2 (ENSOCUG00000004913) #25	ACTR2 (ENSOCUG00000004906) #27	RAB1A (ENSOCUG00000017003) #28	CEP68 (ENSOCUG00000016996) #29	ENSOCUG00000010821 #30	SERTAD2 (ENSOCUG00000008192) #31	AFTPH (ENSOCUG00000006390) #32	LGALSL (ENSOCUG00000013957) #34	ENSOCUG00000031191	PELI1 (ENSOCUG00000027961) #35	VPS54 (ENSOCUG00000002143) #36	ENSOCUG00000002137 #37
Rabbit	MODERN SPECIES	1401	RTL5 (ENSOCUG00000008707)	PIN4 (ENSOCUG00000008715)	ERCC6L (ENSOCUG00000008724)	ENSOCUG00000015749	ENSOCUG00000013315	HDAC8 (ENSOCUG00000013317)	PHKA1 (ENSOCUG00000024271)	ENSOCUG00000024072	ENSOCUG00000029608	ENSOCUG00000025806	ENSOCUG00000002565	NAP1L2 (ENSOCUG00000007414)	ENSOCUG00000027857	CDX4 (ENSOCUG00000013356)	CHIC1 (ENSOCUG00000009801)	ENSOCUG00000024276 #22	ENSOCUG00000021083	ENSOCUG00000014764	SLC25A53 (ENSOCUG00000003541)	FAM199X (ENSOCUG00000014228)	ENSOCUG00000029369	ENSOCUG00000024906	IL1RAPL2 (ENSOCUG00000002614)	ENSOCUG00000035301	ENSOCUG00000031682	NRK (ENSOCUG00000002624)	SERPINA7 (ENSOCUG00000017102)	PWWP3B (ENSOCUG00000009133)	RADX (ENSOCUG00000012521)	RNF128 (ENSOCUG00000012328)	TBC1D8B (ENSOCUG00000012340)
Rabbit	MODERN SPECIES	12	RAD51B (ENSOCUG00000000597)	ZFYVE26 (ENSOCUG00000000593)	RDH12 (ENSOCUG00000000592)	RDH11 (ENSOCUG00000000590)	VTI1B (ENSOCUG00000000586)	ARG2 (ENSOCUG00000000584)	PIGH (ENSOCUG00000000583)	PLEKHH1 (ENSOCUG00000000574)	ENSOCUG00000008623	PLEK2 (ENSOCUG00000012031)	EIF2S1 (ENSOCUG00000012023)	ATP6V1D (ENSOCUG00000012018)	PALS1 (ENSOCUG00000012009)	GARIN2 (ENSOCUG00000016396)	GPHN (ENSOCUG00000000898)	ENSOCUG00000034313 #22	CCDC196 (ENSOCUG00000025913)	FUT8 (ENSOCUG00000004667)	MAX (ENSOCUG00000014439)	ENSOCUG00000014429	ENSOCUG00000037657	ENSOCUG00000013411	CCDC175 (ENSOCUG00000013421)	LRRC9 (ENSOCUG00000002335)	PCNX4 (ENSOCUG00000029440)	DHRS7 (ENSOCUG00000002249)	PPM1A (ENSOCUG00000009955)	C14orf39 (ENSOCUG00000004745)	ENSOCUG00000038439	SIX6 (ENSOCUG00000004752)	SIX1 (ENSOCUG00000014268)